Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Muroidea	ANCESTRAL SPECIES	37	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716 #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Murinae	ANCESTRAL SPECIES	4	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716 #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mus	ANCESTRAL SPECIES	12	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716 #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716.h ##8	ENSGT00940000155716.g #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000158282 #7	ENSGT00940000155716.h ##8	ENSGT00940000155716.g #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716.h ##8	ENSGT00940000155716.g #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Steppe mouse	MODERN SPECIES	3022	Marchf8 (ENSMSIG00000002032) #7	Zfand4 (ENSMSIG00000001904) #8	Washc2 (ENSMSIG00000001796) #9	ENSMSIG00000001776 #10	Tmcc1 (ENSMSIG00000001659) #11	ENSMSIG00000001422 #12	H1f8 (ENSMSIG00000001367) #13	ENSMSIG00000001359 #14	Rho (ENSMSIG00000001309) #15	Ift122 (ENSMSIG00000000881) #16	Mbd4 (ENSMSIG00000000793) #17	Efcab12 (ENSMSIG00000000741) #18	Rpl32 (ENSMSIG00000000692) #19	Cand2 (ENSMSIG00000000651) #20	Tmem40 (ENSMSIG00000000359) #21	Raf1 (ENSMSIG00000000188) #22	ENSMSIG00000031938 #23	Mkrn2os (ENSMSIG00000031937) #24	Tsen2 (ENSMSIG00000031936) #25	Pparg (ENSMSIG00000031935) #26	Timp4 (ENSMSIG00000031934) #27	ENSMSIG00000031933 #28	Syn2 (ENSMSIG00000031932) #29	ENSMSIG00000031931 #30	ENSMSIG00000031930 #31	ENSMSIG00000031929 #32	Atg7 (ENSMSIG00000031927) #33
spretus	MODERN SPECIES	15	Alox5 (MGP_SPRETEiJ_G0029798)	Marchf8 (MGP_SPRETEiJ_G0029797) #7	MGP_SPRETEiJ_G0029796 ##8	Zfand4 (MGP_SPRETEiJ_G0029795) #8	Washc2 (MGP_SPRETEiJ_G0029794) #9	MGP_SPRETEiJ_G0029793 #11	Plxnd1 (MGP_SPRETEiJ_G0029792) #12	H1f8 (MGP_SPRETEiJ_G0029791) #13	Rho (MGP_SPRETEiJ_G0029790) #15	Ift122 (MGP_SPRETEiJ_G0029789) #16	Mbd4 (MGP_SPRETEiJ_G0029788) #17	Efcab12 (MGP_SPRETEiJ_G0029787) #18	MGP_SPRETEiJ_G0029786 ##19	Cand2 (MGP_SPRETEiJ_G0029785) #20	Tmem40 (MGP_SPRETEiJ_G0029784) #21	Raf1 (MGP_SPRETEiJ_G0029783) #22	Mkrn2 (MGP_SPRETEiJ_G0029782) #23	Mkrn2os (MGP_SPRETEiJ_G0029781) #24	Tsen2 (MGP_SPRETEiJ_G0029780) #25	Pparg (MGP_SPRETEiJ_G0029779) #26	Timp4 (MGP_SPRETEiJ_G0029778) #27	MGP_SPRETEiJ_G0029777	Syn2 (MGP_SPRETEiJ_G0029776) #29	Tamm41 (MGP_SPRETEiJ_G0029775) #30	Vgll4 (MGP_SPRETEiJ_G0029774) #31	Atg7 (MGP_SPRETEiJ_G0029773) #33	Hrh1 (MGP_SPRETEiJ_G0029772)	Slc6a1 (MGP_SPRETEiJ_G0029771)	Slc6a11 (MGP_SPRETEiJ_G0029770)	Atp2b2 (MGP_SPRETEiJ_G0029769)	Sec13 (MGP_SPRETEiJ_G0029768)
Mouse	MODERN SPECIES	15	Or13a1 (ENSMUSG00000053391)	Alox5 (ENSMUSG00000025701)	Marchf8 (ENSMUSG00000025702) #7	Zfand4 (ENSMUSG00000042213) #8	Washc2 (ENSMUSG00000024104) #9	Tmcc1 (ENSMUSG00000030126) #11	Plxnd1 (ENSMUSG00000030123) #12	H1f8 (ENSMUSG00000042279) #13	Rho (ENSMUSG00000030324) #15	Ift122 (ENSMUSG00000030323) #16	Mbd4 (ENSMUSG00000030322) #17	Efcab12 (ENSMUSG00000030321) #18	Rpl32 (ENSMUSG00000057841) ##19	Cand2 (ENSMUSG00000030319) #20	Tmem40 (ENSMUSG00000059900) #21	Raf1 (ENSMUSG00000000441) #22	Mkrn2 (ENSMUSG00000000439) #23	Mkrn2os (ENSMUSG00000068011) #24	Tsen2 (ENSMUSG00000042389) #25	Pparg (ENSMUSG00000000440) #26	Timp4 (ENSMUSG00000030317) #27	Syn2 (ENSMUSG00000009394) #29	Tamm41 (ENSMUSG00000030316) #30	Vgll4 (ENSMUSG00000030315) #31	Atg7 (ENSMUSG00000030314) #33	Hrh1 (ENSMUSG00000053004)	Slc6a1 (ENSMUSG00000030310)	Slc6a11 (ENSMUSG00000030307)	Atp2b2 (ENSMUSG00000030302)	Sec13 (ENSMUSG00000030298)	Ghrl (ENSMUSG00000064177)
Ryukyu mouse	MODERN SPECIES	15	Alox5 (MGP_CAROLIEiJ_G0028770)	Marchf8 (MGP_CAROLIEiJ_G0028769) #7	MGP_CAROLIEiJ_G0028768 ##8	Zfand4 (MGP_CAROLIEiJ_G0028767) #8	Washc2 (MGP_CAROLIEiJ_G0028766) #9	Tmcc1 (MGP_CAROLIEiJ_G0028765) #11	Plxnd1 (MGP_CAROLIEiJ_G0028764) #12	H1f8 (MGP_CAROLIEiJ_G0028763) #13	Rho (MGP_CAROLIEiJ_G0028762) #15	Ift122 (MGP_CAROLIEiJ_G0028761) #16	Mbd4 (MGP_CAROLIEiJ_G0028760) #17	Efcab12 (MGP_CAROLIEiJ_G0028759) #18	MGP_CAROLIEiJ_G0028758 ##19	Cand2 (MGP_CAROLIEiJ_G0028757) #20	MGP_CAROLIEiJ_G0028756 #21	Raf1 (MGP_CAROLIEiJ_G0028755) #22	Mkrn2 (MGP_CAROLIEiJ_G0028754) #23	Mkrn2os (MGP_CAROLIEiJ_G0028753) #24	Tsen2 (MGP_CAROLIEiJ_G0028752) #25	Pparg (MGP_CAROLIEiJ_G0028751) #26	Timp4 (MGP_CAROLIEiJ_G0028750) #27	MGP_CAROLIEiJ_G0028749	Syn2 (MGP_CAROLIEiJ_G0028748) #29	Tamm41 (MGP_CAROLIEiJ_G0028747) #30	Vgll4 (MGP_CAROLIEiJ_G0028746) #31	Atg7 (MGP_CAROLIEiJ_G0028745) #33	Hrh1 (MGP_CAROLIEiJ_G0028744)	Slc6a1 (MGP_CAROLIEiJ_G0028743)	Slc6a11 (MGP_CAROLIEiJ_G0028742)	Atp2b2 (MGP_CAROLIEiJ_G0028741)	Sec13 (MGP_CAROLIEiJ_G0028740)
Shrew mouse	MODERN SPECIES	11	Alox5 (MGP_PahariEiJ_G0022521)	Marchf8 (MGP_PahariEiJ_G0022520) #7	MGP_PahariEiJ_G0022519 #8	MGP_PahariEiJ_G0022518 #8	Washc2 (MGP_PahariEiJ_G0022517) #9	Tmcc1 (MGP_PahariEiJ_G0022516) #11	Plxnd1 (MGP_PahariEiJ_G0022515) #12	H1f8 (MGP_PahariEiJ_G0022514) #13	Rho (MGP_PahariEiJ_G0022513) #15	Ift122 (MGP_PahariEiJ_G0022512) #16	MGP_PahariEiJ_G0022511 #17	Efcab12 (MGP_PahariEiJ_G0022510) #18	MGP_PahariEiJ_G0022509 ##19	Cand2 (MGP_PahariEiJ_G0022508) #20	Tmem40 (MGP_PahariEiJ_G0022507) #21	Raf1 (MGP_PahariEiJ_G0022506) #22	Mkrn2 (MGP_PahariEiJ_G0022505) #23	Mkrn2os (MGP_PahariEiJ_G0022504) #24	Tsen2 (MGP_PahariEiJ_G0022503) #25	Pparg (MGP_PahariEiJ_G0022502) #26	Timp4 (MGP_PahariEiJ_G0022501) #27	MGP_PahariEiJ_G0022500	Syn2 (MGP_PahariEiJ_G0022499) #29	Tamm41 (MGP_PahariEiJ_G0022498) #30	Vgll4 (MGP_PahariEiJ_G0022497) #31	Atg7 (MGP_PahariEiJ_G0022496) #33	Hrh1 (MGP_PahariEiJ_G0022495)	Slc6a1 (MGP_PahariEiJ_G0022494)	Slc6a11 (MGP_PahariEiJ_G0022493)	Atp2b2 (MGP_PahariEiJ_G0022492)	Sec13 (MGP_PahariEiJ_G0022491)
Rat	MODERN SPECIES	14	ENSRNOG00000066609	Zfand4 (ENSRNOG00000011791) #8	Washc2c (ENSRNOG00000011653) #9	LOC680385 (ENSRNOG00000011606)	Tmcc1 (ENSRNOG00000011614) #11	AABR07061825.2 (ENSRNOG00000059964)	Plxnd1 (ENSRNOG00000025209) #12	H1f8 (ENSRNOG00000025251) #13	Rho (ENSRNOG00000011144) #15	Ift122 (ENSRNOG00000010952) #16	Mbd4 (ENSRNOG00000010919) #17	Efcab12 (ENSRNOG00000026176) #18	Rpl32 (ENSRNOG00000010746) ##19	Cand2 (ENSRNOG00000010473) #20	Tmem40 (ENSRNOG00000010430) #21	Raf1 (ENSRNOG00000010153) #22	Mkrn2 (ENSRNOG00000009176) #23	Mkrn2os (ENSRNOG00000070957) #24	Tsen2 (ENSRNOG00000060175) #25	Pparg (ENSRNOG00000008839) #26	Timp4 (ENSRNOG00000007955) #27	ENSRNOG00000069227	AC128901.1 (ENSRNOG00000028826)	ENSRNOG00000067395	Syn2 (ENSRNOG00000008157) #29	Tamm41 (ENSRNOG00000007874) #30	Vgll4 (ENSRNOG00000007822) #31	Atg7 (ENSRNOG00000007486) #33	ENSRNOG00000069624	LOC120102367 (ENSRNOG00000067090)	Hrh1 (ENSRNOG00000007420)
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716 #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.d ##19	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Cricetinae	ANCESTRAL SPECIES	8	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716 #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000156062 #29	ENSGT00940000159798 #27	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Golden Hamster	MODERN SPECIES	622	Zfp422 (ENSMAUG00000020581)	Alox5 (ENSMAUG00000018983)	ENSMAUG00000021879 #7	ENSMAUG00000008109 #8	Washc2 (ENSMAUG00000020725) #9	ENSMAUG00000021669 #11	Plxnd1 (ENSMAUG00000021112) #12	H1f8 (ENSMAUG00000011359) #13	Rho (ENSMAUG00000002081) #15	Ift122 (ENSMAUG00000005778) #16	ENSMAUG00000014245 #17	Efcab12 (ENSMAUG00000010638) #18	ENSMAUG00000020260	Cand2 (ENSMAUG00000005693) #20	Tmem40 (ENSMAUG00000015454) #21	Raf1 (ENSMAUG00000015447) #22	Mkrn2 (ENSMAUG00000014200) #23	Mkrn2os (ENSMAUG00000010492) #24	ENSMAUG00000013859 #25	ENSMAUG00000012323 #26	ENSMAUG00000020153 #29	Timp4 (ENSMAUG00000018049) #27	ENSMAUG00000013097	Tamm41 (ENSMAUG00000017519) #30	Vgll4 (ENSMAUG00000011159) #31	Atg7 (ENSMAUG00000003276) #33	Hrh1 (ENSMAUG00000009874)	Slc6a1 (ENSMAUG00000021551)	Slc6a11 (ENSMAUG00000008311)	Atp2b2 (ENSMAUG00000009448)	Sec13 (ENSMAUG00000012999)
Chinese hamster chok1gshd	MODERN SPECIES	144	ENSCGRG00001008362	Alox5 (ENSCGRG00001010128)	Marchf8 (ENSCGRG00001003616) #7	Zfand4 (ENSCGRG00001023303) #8	Washc2 (ENSCGRG00001019572) #9	Tmcc1 (ENSCGRG00001016263) #11	Plxnd1 (ENSCGRG00001007901) #12	H1f8 (ENSCGRG00001024504) #13	Rho (ENSCGRG00001018161) #15	Ift122 (ENSCGRG00001012761) #16	Mbd4 (ENSCGRG00001003507) #17	Efcab12 (ENSCGRG00001000767) #18	ENSCGRG00001000039 ##19	Cand2 (ENSCGRG00001024197) #20	Tmem40 (ENSCGRG00001022432) #21	Raf1 (ENSCGRG00001020096) #22	ENSCGRG00001019373 #23	Mkrn2os (ENSCGRG00001018483) #24	Tsen2 (ENSCGRG00001017681) #25	Pparg (ENSCGRG00001013849) #26	Timp4 (ENSCGRG00001010158) #27	Syn2 (ENSCGRG00001007902) #29	Tamm41 (ENSCGRG00001003506) #30	Vgll4 (ENSCGRG00001001705) #31	Atg7 (ENSCGRG00001017070) #33	Hrh1 (ENSCGRG00001015773)	Slc6a1 (ENSCGRG00001006244)	Slc6a11 (ENSCGRG00001000475)	Atp2b2 (ENSCGRG00001021784)	Sec13 (ENSCGRG00001019327)	Ghrl (ENSCGRG00001018358)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282 #7	ENSGT00940000155716 #8	ENSGT00940000153997.b.a.a #9	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Prairie vole	MODERN SPECIES	84	Alox5 (ENSMOCG00000006115)	ENSMOCG00000002394 #7	ENSMOCG00000018066 #8	Washc2 (ENSMOCG00000018011) #9	Tmcc1 (ENSMOCG00000009713) #11	Plxnd1 (ENSMOCG00000014026) #12	H1f8 (ENSMOCG00000005594) #13	Rho (ENSMOCG00000022070) #15	Ift122 (ENSMOCG00000014549) #16	ENSMOCG00000002466 #17	ENSMOCG00000019929 #17	Efcab12 (ENSMOCG00000020496) #18	ENSMOCG00000015206 ##19	Cand2 (ENSMOCG00000012580) #20	Tmem40 (ENSMOCG00000021932) #21	Raf1 (ENSMOCG00000012403) #22	Mkrn2 (ENSMOCG00000015472) #23	Mkrn2os (ENSMOCG00000010265) #24	Tsen2 (ENSMOCG00000020824) #25	Pparg (ENSMOCG00000017202) #26	ENSMOCG00000013854	Timp4 (ENSMOCG00000013297) #27	Syn2 (ENSMOCG00000000368) #29	Tamm41 (ENSMOCG00000020960) #30	Vgll4 (ENSMOCG00000012297) #31	Atg7 (ENSMOCG00000009400) #33	ENSMOCG00000016658	Hrh1 (ENSMOCG00000009133)	Slc6a1 (ENSMOCG00000011689)	Slc6a11 (ENSMOCG00000010284)	Atp2b2 (ENSMOCG00000022399)
Northern American deer mouse	MODERN SPECIES	16	Alox5 (ENSPEMG00000015300)	Marchf8 (ENSPEMG00000015311) #7	Zfand4 (ENSPEMG00000008943) #8	Washc2 (ENSPEMG00000017284) #9	Tmcc1 (ENSPEMG00000000449) #11	ENSPEMG00000024601	Plxnd1 (ENSPEMG00000008271) #12	H1f8 (ENSPEMG00000011381) #13	Rho (ENSPEMG00000008463) #15	Ift122 (ENSPEMG00000017389) #16	Mbd4 (ENSPEMG00000006226) #17	Efcab12 (ENSPEMG00000012553) #18	ENSPEMG00000012965 ##19	ENSPEMG00000029699 ##20	Tmem40 (ENSPEMG00000002944) #21	Raf1 (ENSPEMG00000012728) #22	Mkrn2 (ENSPEMG00000002776) #23	Mkrn2os (ENSPEMG00000012076) #24	Tsen2 (ENSPEMG00000013175) #25	Pparg (ENSPEMG00000013545) #26	Timp4 (ENSPEMG00000026166) #27	Syn2 (ENSPEMG00000016120) #29	Tamm41 (ENSPEMG00000017033) #30	Vgll4 (ENSPEMG00000026845) #31	Atg7 (ENSPEMG00000010473) #33	Hrh1 (ENSPEMG00000028414)	Slc6a1 (ENSPEMG00000011702)	Slc6a11 (ENSPEMG00000020194)	Atp2b2 (ENSPEMG00000000259)	Sec13 (ENSPEMG00000009433)	Ghrl (ENSPEMG00000001433)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1707	Fgd5 (ENSNGAG00000024178)	Nr2c2 (ENSNGAG00000022501)	Mrps25 (ENSNGAG00000021861)	Rbsn (ENSNGAG00000022967)	Trh (ENSNGAG00000022332)	Tmcc1 (ENSNGAG00000010573) #11	Plxnd1 (ENSNGAG00000020476) #12	H1f8 (ENSNGAG00000023630) #13	Rho (ENSNGAG00000020656) #15	Ift122 (ENSNGAG00000022462) #16	ENSNGAG00000017381 #17	Efcab12 (ENSNGAG00000008314) #18	ENSNGAG00000024001 ##19	Cand2 (ENSNGAG00000024002) #20	Tmem40 (ENSNGAG00000021850) #21	Raf1 (ENSNGAG00000019548) #22	Mkrn2 (ENSNGAG00000012579) #23	Mkrn2os (ENSNGAG00000019573) #24	ENSNGAG00000013561 #25	Pparg (ENSNGAG00000014683) #26	Timp4 (ENSNGAG00000021746) #27	Syn2 (ENSNGAG00000022266) #29	Tamm41 (ENSNGAG00000013592) #30	Vgll4 (ENSNGAG00000013946) #31	ENSNGAG00000003030	Hrh1 (ENSNGAG00000021456)	Slc6a1 (ENSNGAG00000015663)	Slc6a11 (ENSNGAG00000013842)	Atp2b2 (ENSNGAG00000015473)	Sec13 (ENSNGAG00000003425)	Ghrl (ENSNGAG00000022045)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	45	Fgd5 (ENSJJAG00000001082)	Nr2c2 (ENSJJAG00000016580)	Mrps25 (ENSJJAG00000013413)	Rbsn (ENSJJAG00000024360)	ENSJJAG00000023012	Tmcc1 (ENSJJAG00000019999) #11	ENSJJAG00000020659	Plxnd1 (ENSJJAG00000014069) #12	ENSJJAG00000014828 #13	Rho (ENSJJAG00000022285) #15	Ift122 (ENSJJAG00000020288) #16	ENSJJAG00000016695 #17	ENSJJAG00000021233 ##19	Cand2 (ENSJJAG00000018247) #20	Tmem40 (ENSJJAG00000009444) #21	ENSJJAG00000016961 #22	Mkrn2 (ENSJJAG00000019765) #23	Mkrn2os (ENSJJAG00000022652) #24	ENSJJAG00000015646	ENSJJAG00000002861 #25	Pparg (ENSJJAG00000023734) #26	ENSJJAG00000012036	ENSJJAG00000015072 #29	Timp4 (ENSJJAG00000015654) #27	Tamm41 (ENSJJAG00000015841) #30	Vgll4 (ENSJJAG00000017532) #31	Atg7 (ENSJJAG00000021264) #33	Hrh1 (ENSJJAG00000012905)	Slc6a1 (ENSJJAG00000013717)	Slc6a11 (ENSJJAG00000008690)	Atp2b2 (ENSJJAG00000009628)
Lesser Egyptian jerboa	MODERN SPECIES	89	Gkn3 (ENSJJAG00000008849)	Bmp10 (ENSJJAG00000015538)	Arhgap25 (ENSJJAG00000019832)	Prokr1 (ENSJJAG00000012059)	Nid1 (ENSJJAG00000016000)	Gpr137b (ENSJJAG00000017509)	Edaradd (ENSJJAG00000019933)	ENSJJAG00000008800	ENSJJAG00000015235	ENSJJAG00000022730	ENSJJAG00000013416	Actn2 (ENSJJAG00000016245)	ENSJJAG00000012786	Mtr (ENSJJAG00000019411)	Ryr2 (ENSJJAG00000023141)	ENSJJAG00000012477 #22	ENSJJAG00000014102	Chrm3 (ENSJJAG00000001306)	ENSJJAG00000022159	Zmynd11 (ENSJJAG00000013493)	Dip2c (ENSJJAG00000022563)	ENSJJAG00000015934	Larp4b (ENSJJAG00000020847)	Gtpbp4 (ENSJJAG00000010021)	ENSJJAG00000010808	ENSJJAG00000023023	Wdr37 (ENSJJAG00000001407)	Adarb2 (ENSJJAG00000015849)	ENSJJAG00000023250	ENSJJAG00000023540	ENSJJAG00000005077
Kangaroo rat	MODERN SPECIES	331	Ccdc174 (ENSDORG00000007328)	4930590J08Rik (ENSDORG00000007329)	Fgd5 (ENSDORG00000016297)	Nr2c2 (ENSDORG00000007038)	Mrps25 (ENSDORG00000026838)	Rbsn (ENSDORG00000009815)	Tmcc1 (ENSDORG00000026595) #11	Plxnd1 (ENSDORG00000000912) #12	ENSDORG00000026967 #13	Rho (ENSDORG00000000911) #15	Ift122 (ENSDORG00000000906) #16	ENSDORG00000000902 #17	Rpl32 (ENSDORG00000008426) ##19	Cand2 (ENSDORG00000008424) #20	ENSDORG00000023579 #21	Raf1 (ENSDORG00000015622) #22	Mkrn2 (ENSDORG00000015621) #23	Mkrn2os (ENSDORG00000028573) #24	Tsen2 (ENSDORG00000003395) #25	Pparg (ENSDORG00000003445) #26	ENSDORG00000009507 #29	Timp4 (ENSDORG00000009509) #27	Tamm41 (ENSDORG00000002091) #30	Vgll4 (ENSDORG00000004378) #31	Atg7 (ENSDORG00000004380) #33	Slc6a1 (ENSDORG00000016380)	Slc6a11 (ENSDORG00000016390)	Atp2b2 (ENSDORG00000015330)	Sec13 (ENSDORG00000015327)	Ghrl (ENSDORG00000012281)	Tatdn2 (ENSDORG00000012279)
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000156062 #29	ENSGT00940000159798 #27	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000155189 #11	ENSGT00940000160900 #13	ENSGT00390000016951	ENSGT01020000230394.e.b.a #12	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00940000157312.h	ENSGT00940000157200	ENSGT00390000005378	ENSGT00390000006066	ENSGT00940000158804	ENSGT00390000003219	ENSGT00940000158155	ENSGT00950000182956.b.b.a.b	ENSGT00940000158225	ENSGT00940000161249	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857
Guinea pig	MODERN SPECIES	109	GRIP2 (ENSCPOG00000021047)	CCDC174 (ENSCPOG00000039402)	C3orf20 (ENSCPOG00000006783)	FGD5 (ENSCPOG00000013157)	NR2C2 (ENSCPOG00000001512)	MRPS25 (ENSCPOG00000020398)	RBSN (ENSCPOG00000003200)	TMCC1 (ENSCPOG00000009299) #11	PLXND1 (ENSCPOG00000004989) #12	RHO (ENSCPOG00000004984) #15	IFT122 (ENSCPOG00000004975) #16	ENSCPOG00000004970 #17	RPL32 (ENSCPOG00000019967) ##19	CAND2 (ENSCPOG00000023286) #20	TMEM40 (ENSCPOG00000025632) #21	RAF1 (ENSCPOG00000001210) #22	MKRN2 (ENSCPOG00000001208) #23	MKRN2OS (ENSCPOG00000032819) #24	ENSCPOG00000009944	FKBP4 (ENSCPOG00000002453)	ITFG2 (ENSCPOG00000021230)	ENSCPOG00000005850	ENSCPOG00000031884	ARHGAP21 (ENSCPOG00000004505)	ENKUR (ENSCPOG00000009590)	ENSCPOG00000000291	GPR158 (ENSCPOG00000001565)	ENSCPOG00000034310	ENSCPOG00000013721	ENSCPOG00000039199	GAD2 (ENSCPOG00000013724)
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00940000157312.h	ENSGT00940000157200	ENSGT00390000005378	ENSGT00390000006066	ENSGT00940000158804	ENSGT00390000003219	ENSGT00940000158155	ENSGT00950000182956.b.b.a.b	ENSGT00940000158225	ENSGT00940000161249	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857
Degu	MODERN SPECIES	274	ENSODEG00000002030	RBSN (ENSODEG00000001991)	MRPS25 (ENSODEG00000001966)	NR2C2 (ENSODEG00000001892)	ENSODEG00000001861	ENSODEG00000001849	ENSODEG00000001772	TMCC1 (ENSODEG00000001710) #11	PLXND1 (ENSODEG00000003347) #12	RHO (ENSODEG00000003304) #15	IFT122 (ENSODEG00000003013) #16	ENSODEG00000002902 #17	ENSODEG00000002891 #19	CAND2 (ENSODEG00000002821) #20	TMEM40 (ENSODEG00000002755) #21	RAF1 (ENSODEG00000002734) #22	MKRN2 (ENSODEG00000002702) #23	MKRN2OS (ENSODEG00000002688) #24	ENSODEG00000002676	SLC6A11 (ENSODEG00000002665)	SLC6A1 (ENSODEG00000002644)	ATG7 (ENSODEG00000002299) #33	ENSODEG00000002124 #31	ENSODEG00000018794	TAMM41 (ENSODEG00000002076) #30	TIMP4 (ENSODEG00000002023) #27	ENSODEG00000001988 #29	PPARG (ENSODEG00000002659) #26	TSEN2 (ENSODEG00000002629) #25	ENSODEG00000002503	HMCES (ENSODEG00000002476)
Long-tailed chinchilla	MODERN SPECIES	136	GRIP2 (ENSCLAG00000013538)	CCDC174 (ENSCLAG00000011014)	C3orf20 (ENSCLAG00000013841)	FGD5 (ENSCLAG00000011953)	NR2C2 (ENSCLAG00000011082)	MRPS25 (ENSCLAG00000008381)	RBSN (ENSCLAG00000011613)	TMCC1 (ENSCLAG00000014727) #11	PLXND1 (ENSCLAG00000012627) #12	RHO (ENSCLAG00000006233) #15	IFT122 (ENSCLAG00000006170) #16	MBD4 (ENSCLAG00000008974) #17	ENSCLAG00000007426 ##19	CAND2 (ENSCLAG00000007541) #20	TMEM40 (ENSCLAG00000009668) #21	RAF1 (ENSCLAG00000010316) #22	MKRN2 (ENSCLAG00000008755) #23	MKRN2OS (ENSCLAG00000009109) #24	ENSCLAG00000011764	FKBP4 (ENSCLAG00000013510)	ITFG2 (ENSCLAG00000016639)	TEX52 (ENSCLAG00000013429)	FOXM1 (ENSCLAG00000014183)	RHNO1 (ENSCLAG00000017326)	TULP3 (ENSCLAG00000017345)	TEAD4 (ENSCLAG00000012070)	ENSCLAG00000008194	ENSCLAG00000009091	FAM171A1 (ENSCLAG00000009809)	NMT2 (ENSCLAG00000008204)	RPP38 (ENSCLAG00000010194)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000000266	ENSHGLG00000000240	ENSHGLG00000040044 #11	ENSHGLG00000040416 #13	RHO (ENSHGLG00000006668) #15	IFT122 (ENSHGLG00000009113) #16	MBD4 (ENSHGLG00000009034) #17	ENSHGLG00000015777 #18	ENSHGLG00000040769 ##19	ENSHGLG00000015580 #20	ENSHGLG00000015498 #21	ENSHGLG00000033042	ENSHGLG00000039038	ENSHGLG00000032617	ENSHGLG00000037560	ENSHGLG00000018214 #22	ENSHGLG00000018194 #23	ENSHGLG00000017856 #24	ENSHGLG00000045316	ENSHGLG00000032284	ENSHGLG00000019586	ENSHGLG00000039046	ENSHGLG00000000920	GATA2 (ENSHGLG00000000985)	DNAJB8 (ENSHGLG00000046802)	ENSHGLG00000037886	ENSHGLG00000000094	ENSHGLG00000000122	ENSHGLG00000002369 #31	HRH1 (ENSHGLG00000044045)	ENSHGLG00000045274
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Marmotini	ANCESTRAL SPECIES	49	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00960000190360	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Marmotini_b	ANCESTRAL SPECIES	62	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000016951	ENSGT00940000155189 #11	ENSGT01020000230394.e.b.a #12	ENSGT00940000160900 #13	ENSGT01030000234549.a.a.a.a.a.b.b #15	ENSGT00390000001016.b #16	ENSGT00530000063687.a #17	ENSGT00390000014874 #18	ENSGT00940000153973.c.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266 #25	ENSGT00940000158273 #26	ENSGT00940000159798 #27	ENSGT00940000156062 #29	ENSGT00390000000616 #30	ENSGT00390000003282.B #31	ENSGT00390000017509 #33	ENSGT00940000160690	ENSGT00960000190360	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Squirrel	MODERN SPECIES	202	GRIP2 (ENSSTOG00000000954)	CCDC174 (ENSSTOG00000027414)	C3orf20 (ENSSTOG00000002907)	FGD5 (ENSSTOG00000005202)	NR2C2 (ENSSTOG00000005250)	MRPS25 (ENSSTOG00000030962)	RBSN (ENSSTOG00000022986)	TRH (ENSSTOG00000026247)	TMCC1 (ENSSTOG00000019869) #11	PLXND1 (ENSSTOG00000024621) #12	RHO (ENSSTOG00000028352) #15	IFT122 (ENSSTOG00000004353) #16	MBD4 (ENSSTOG00000020663) #17	ENSSTOG00000026505 ##19	CAND2 (ENSSTOG00000023136) #20	RAF1 (ENSSTOG00000025146) #22	MKRN2 (ENSSTOG00000010520) #23	MKRN2OS (ENSSTOG00000031428) #24	TSEN2 (ENSSTOG00000000538) #25	PPARG (ENSSTOG00000012778) #26	SYN2 (ENSSTOG00000011519) #29	TIMP4 (ENSSTOG00000034531) #27	ENSSTOG00000028589	VGLL4 (ENSSTOG00000025247) #31	ATG7 (ENSSTOG00000015288) #33	HRH1 (ENSSTOG00000015286)	SLC6A1 (ENSSTOG00000007598)	SLC6A11 (ENSSTOG00000028999)	ATP2B2 (ENSSTOG00000014026)	SEC13 (ENSSTOG00000014017)	GHRL (ENSSTOG00000022095)
Arctic ground squirrel	MODERN SPECIES	23	NR2C2 (ENSUPAG00010000576)	MRPS25 (ENSUPAG00010000567)	RBSN (ENSUPAG00010000555)	TRH (ENSUPAG00010000545)	TMCC1 (ENSUPAG00010000491) #11	PLXND1 (ENSUPAG00010000023) #12	H1-8 (ENSUPAG00010023069) #13	RHO (ENSUPAG00010023066) #15	IFT122 (ENSUPAG00010023058) #16	ENSUPAG00010023053 #17	ENSUPAG00010023052 #17	EFCAB12 (ENSUPAG00010023049) #18	ENSUPAG00010023046 ##19	CAND2 (ENSUPAG00010023044) #20	TMEM40 (ENSUPAG00010023040) #21	RAF1 (ENSUPAG00010023038) #22	MKRN2 (ENSUPAG00010023036) #23	MKRN2OS (ENSUPAG00010023035) #24	TSEN2 (ENSUPAG00010023034) #25	PPARG (ENSUPAG00010023031) #26	TIMP4 (ENSUPAG00010023029) #27	SYN2 (ENSUPAG00010023028) #29	ENSUPAG00010023027 #30	VGLL4 (ENSUPAG00010023024) #31	ATG7 (ENSUPAG00010023011) #33	HRH1 (ENSUPAG00010023010)	ENSUPAG00010023009	SLC6A1 (ENSUPAG00010023006)	SLC6A11 (ENSUPAG00010023004)	ATP2B2 (ENSUPAG00010022999)	SEC13 (ENSUPAG00010022998)
Alpin marmot	MODERN SPECIES	40	C3orf20 (ENSMMMG00000011543)	FGD5 (ENSMMMG00000011473)	NR2C2 (ENSMMMG00000011464)	MRPS25 (ENSMMMG00000011452)	RBSN (ENSMMMG00000011435)	TRH (ENSMMMG00000011424)	TMCC1 (ENSMMMG00000011365) #11	ENSMMMG00000011319 #12	ENSMMMG00000011299 #13	RHO (ENSMMMG00000011272) #15	IFT122 (ENSMMMG00000011068) #16	MBD4 (ENSMMMG00000011043) #17	EFCAB12 (ENSMMMG00000011023) #18	ENSMMMG00000010997 ##19	ENSMMMG00000010993 #20	RAF1 (ENSMMMG00000010957) #22	ENSMMMG00000010950	MKRN2 (ENSMMMG00000010927) #23	MKRN2OS (ENSMMMG00000010915) #24	ENSMMMG00000010907 #25	ENSMMMG00000010899 #25	PPARG (ENSMMMG00000010840) #26	ENSMMMG00000010687 #27	SYN2 (ENSMMMG00000010440) #29	TAMM41 (ENSMMMG00000010322) #30	VGLL4 (ENSMMMG00000010304) #31	ATG7 (ENSMMMG00000009966) #33	ENSMMMG00000009925	HRH1 (ENSMMMG00000009921)	ENSMMMG00000009895	SLC6A1 (ENSMMMG00000009856)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	10	NR2C2 (ENSSVLG00005017625)	MRPS25 (ENSSVLG00005017966)	RBSN (ENSSVLG00005018031)	TRH (ENSSVLG00005018181)	ENSSVLG00005018231	TMCC1 (ENSSVLG00005018250) #11	PLXND1 (ENSSVLG00005018384) #12	ENSSVLG00005018771 #13	RHO (ENSSVLG00005018827) #15	IFT122 (ENSSVLG00005018941) #16	MBD4 (ENSSVLG00005019308) #17	EFCAB12 (ENSSVLG00005019404) #18	ENSSVLG00005019450 #19	CAND2 (ENSSVLG00005019570) #20	TMEM40 (ENSSVLG00005019760) #21	ENSSVLG00005019978 #22	MKRN2 (ENSSVLG00005020340) #23	MKRN2OS (ENSSVLG00005020454) #24	TSEN2 (ENSSVLG00005020543) #25	PPARG (ENSSVLG00005020780) #26	SYN2 (ENSSVLG00005021130) #29	TIMP4 (ENSSVLG00005021374) #27	TAMM41 (ENSSVLG00005021448) #30	ENSSVLG00005021494	VGLL4 (ENSSVLG00005021566) #31	ATG7 (ENSSVLG00005021683) #33	HRH1 (ENSSVLG00005021749)	SLC6A1 (ENSSVLG00005021844)	SLC6A11 (ENSSVLG00005022396)	ATP2B2 (ENSSVLG00005022802)	SEC13 (ENSSVLG00005023877)
Eurasian red squirrel	MODERN SPECIES	8	BCO1 (ENSSVLG00005025719)	ENSSVLG00005025763	C16orf46 (ENSSVLG00005014992)	ENSSVLG00005015037	CENPN (ENSSVLG00005015134)	CMC2 (ENSSVLG00005015210)	CDYL2 (ENSSVLG00005015278)	DYNLRB2 (ENSSVLG00005015349)	ENSSVLG00005015446	WWOX (ENSSVLG00005015526)	ENSSVLG00005015573	CLEC3A (ENSSVLG00005015615)	VAT1L (ENSSVLG00005015671)	NUDT7 (ENSSVLG00005015783)	ADAMTS18 (ENSSVLG00005015898)	ENSSVLG00005016092 #22	SYCE1L (ENSSVLG00005016146)	MON1B (ENSSVLG00005016284)	CNTNAP4 (ENSSVLG00005016453)	ENSSVLG00005017621	DUXB (ENSSVLG00005017671)	TERF2IP (ENSSVLG00005017752)	KARS1 (ENSSVLG00005017790)	ADAT1 (ENSSVLG00005017872)	GABARAPL2 (ENSSVLG00005017970)	TMEM231 (ENSSVLG00005018059)	ENSSVLG00005018139	TMEM170A (ENSSVLG00005018166)	CFDP1 (ENSSVLG00005018315)	BCAR1 (ENSSVLG00005018450)	ENSSVLG00005018505