Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00940000155189 #14	ENSGT00940000160900	ENSGT00390000016951	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000155615 #7	ENSGT00440000033958 #8	ENSGT00940000153655.B #9	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00940000157312.h #25	ENSGT00940000157200 #26	ENSGT00390000005378 #27	ENSGT00390000006066 #28	ENSGT00940000158804 #29	ENSGT00390000003219 #30	ENSGT00940000158155 #31	ENSGT00950000182956.b.b.a.b #32	ENSGT00940000158225 #33	ENSGT00940000161249 #34	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000155615 #7	ENSGT00440000033958 #8	ENSGT00940000153655.B #9	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00940000157312.h #25	ENSGT00940000157200 #26	ENSGT00390000005378 #27	ENSGT00390000006066 #28	ENSGT00940000158804 #29	ENSGT00390000003219 #30	ENSGT00940000158155 #31	ENSGT00950000182956.b.b.a.b #32	ENSGT00940000158225 #33	ENSGT00940000161249 #34	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857
Long-tailed chinchilla	MODERN SPECIES	136	GRIP2 (ENSCLAG00000013538) #7	CCDC174 (ENSCLAG00000011014) #8	C3orf20 (ENSCLAG00000013841) #9	FGD5 (ENSCLAG00000011953) #10	NR2C2 (ENSCLAG00000011082) #11	MRPS25 (ENSCLAG00000008381) #12	RBSN (ENSCLAG00000011613) #13	TMCC1 (ENSCLAG00000014727) #14	PLXND1 (ENSCLAG00000012627) #15	RHO (ENSCLAG00000006233) #16	IFT122 (ENSCLAG00000006170) #17	MBD4 (ENSCLAG00000008974) #18	ENSCLAG00000007426 #19	CAND2 (ENSCLAG00000007541) #20	TMEM40 (ENSCLAG00000009668) #21	RAF1 (ENSCLAG00000010316) #22	MKRN2 (ENSCLAG00000008755) #23	MKRN2OS (ENSCLAG00000009109) #24	ENSCLAG00000011764 #25	FKBP4 (ENSCLAG00000013510) #26	ITFG2 (ENSCLAG00000016639) #27	TEX52 (ENSCLAG00000013429) #28	FOXM1 (ENSCLAG00000014183) #29	RHNO1 (ENSCLAG00000017326) #30	TULP3 (ENSCLAG00000017345) #31	TEAD4 (ENSCLAG00000012070) #32	ENSCLAG00000008194 #33	ENSCLAG00000009091 #34	FAM171A1 (ENSCLAG00000009809) #35	NMT2 (ENSCLAG00000008204) #36	RPP38 (ENSCLAG00000010194) #37
Degu	MODERN SPECIES	274	ENSODEG00000002030	RBSN (ENSODEG00000001991) #13	MRPS25 (ENSODEG00000001966) #12	NR2C2 (ENSODEG00000001892) #11	ENSODEG00000001861	ENSODEG00000001849	ENSODEG00000001772	TMCC1 (ENSODEG00000001710) #14	PLXND1 (ENSODEG00000003347) #15	RHO (ENSODEG00000003304) #16	IFT122 (ENSODEG00000003013) #17	ENSODEG00000002902 #18	ENSODEG00000002891 ##19	CAND2 (ENSODEG00000002821) #20	TMEM40 (ENSODEG00000002755) #21	RAF1 (ENSODEG00000002734) #22	MKRN2 (ENSODEG00000002702) #23	MKRN2OS (ENSODEG00000002688) #24	ENSODEG00000002676	SLC6A11 (ENSODEG00000002665)	SLC6A1 (ENSODEG00000002644)	ATG7 (ENSODEG00000002299)	ENSODEG00000002124	ENSODEG00000018794	TAMM41 (ENSODEG00000002076)	TIMP4 (ENSODEG00000002023)	ENSODEG00000001988	PPARG (ENSODEG00000002659)	TSEN2 (ENSODEG00000002629)	ENSODEG00000002503	HMCES (ENSODEG00000002476)
Guinea pig	MODERN SPECIES	109	GRIP2 (ENSCPOG00000021047) #7	CCDC174 (ENSCPOG00000039402) #8	C3orf20 (ENSCPOG00000006783) #9	FGD5 (ENSCPOG00000013157) #10	NR2C2 (ENSCPOG00000001512) #11	MRPS25 (ENSCPOG00000020398) #12	RBSN (ENSCPOG00000003200) #13	TMCC1 (ENSCPOG00000009299) #14	PLXND1 (ENSCPOG00000004989) #15	RHO (ENSCPOG00000004984) #16	IFT122 (ENSCPOG00000004975) #17	ENSCPOG00000004970 #18	RPL32 (ENSCPOG00000019967) ##19	CAND2 (ENSCPOG00000023286) #20	TMEM40 (ENSCPOG00000025632) #21	RAF1 (ENSCPOG00000001210) #22	MKRN2 (ENSCPOG00000001208) #23	MKRN2OS (ENSCPOG00000032819) #24	ENSCPOG00000009944 #25	FKBP4 (ENSCPOG00000002453) #26	ITFG2 (ENSCPOG00000021230) #27	ENSCPOG00000005850	ENSCPOG00000031884	ARHGAP21 (ENSCPOG00000004505)	ENKUR (ENSCPOG00000009590)	ENSCPOG00000000291	GPR158 (ENSCPOG00000001565)	ENSCPOG00000034310	ENSCPOG00000013721	ENSCPOG00000039199	GAD2 (ENSCPOG00000013724)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000000266	ENSHGLG00000000240	ENSHGLG00000040044 #14	ENSHGLG00000040416	RHO (ENSHGLG00000006668) #16	IFT122 (ENSHGLG00000009113) #17	MBD4 (ENSHGLG00000009034) #18	ENSHGLG00000015777	ENSHGLG00000040769 #19	ENSHGLG00000015580 #20	ENSHGLG00000015498 #21	ENSHGLG00000033042	ENSHGLG00000039038	ENSHGLG00000032617	ENSHGLG00000037560	ENSHGLG00000018214 #22	ENSHGLG00000018194 #23	ENSHGLG00000017856 #24	ENSHGLG00000045316	ENSHGLG00000032284 #25	ENSHGLG00000019586 #25	ENSHGLG00000039046	ENSHGLG00000000920	GATA2 (ENSHGLG00000000985)	DNAJB8 (ENSHGLG00000046802)	ENSHGLG00000037886	ENSHGLG00000000094	ENSHGLG00000000122	ENSHGLG00000002369	HRH1 (ENSHGLG00000044045)	ENSHGLG00000045274