Theria	ANCESTRAL SPECIES	28	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973 #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Eutheria	ANCESTRAL SPECIES	14	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Glires	ANCESTRAL SPECIES	2	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00940000155189 #14	ENSGT00940000160900	ENSGT00390000016951	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000155615 #7	ENSGT00440000033958 #8	ENSGT00940000153655.B #9	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00940000157312.h #25	ENSGT00940000157200 #26	ENSGT00390000005378 #27	ENSGT00390000006066 #28	ENSGT00940000158804 #29	ENSGT00390000003219 #30	ENSGT00940000158155 #31	ENSGT00950000182956.b.b.a.b #32	ENSGT00940000158225 #33	ENSGT00940000161249 #34	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000155615 #7	ENSGT00440000033958 #8	ENSGT00940000153655.B #9	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00940000157312.h #25	ENSGT00940000157200 #26	ENSGT00390000005378 #27	ENSGT00390000006066 #28	ENSGT00940000158804 #29	ENSGT00390000003219 #30	ENSGT00940000158155 #31	ENSGT00950000182956.b.b.a.b #32	ENSGT00940000158225 #33	ENSGT00940000161249 #34	ENSGT00940000155867	ENSGT00440000033504.B	ENSGT00940000156857
Long-tailed chinchilla	MODERN SPECIES	136	GRIP2 (ENSCLAG00000013538) #7	CCDC174 (ENSCLAG00000011014) #8	C3orf20 (ENSCLAG00000013841) #9	FGD5 (ENSCLAG00000011953) #10	NR2C2 (ENSCLAG00000011082) #11	MRPS25 (ENSCLAG00000008381) #12	RBSN (ENSCLAG00000011613) #13	TMCC1 (ENSCLAG00000014727) #14	PLXND1 (ENSCLAG00000012627) #15	RHO (ENSCLAG00000006233) #16	IFT122 (ENSCLAG00000006170) #17	MBD4 (ENSCLAG00000008974) #18	ENSCLAG00000007426 #19	CAND2 (ENSCLAG00000007541) #20	TMEM40 (ENSCLAG00000009668) #21	RAF1 (ENSCLAG00000010316) #22	MKRN2 (ENSCLAG00000008755) #23	MKRN2OS (ENSCLAG00000009109) #24	ENSCLAG00000011764 #25	FKBP4 (ENSCLAG00000013510) #26	ITFG2 (ENSCLAG00000016639) #27	TEX52 (ENSCLAG00000013429) #28	FOXM1 (ENSCLAG00000014183) #29	RHNO1 (ENSCLAG00000017326) #30	TULP3 (ENSCLAG00000017345) #31	TEAD4 (ENSCLAG00000012070) #32	ENSCLAG00000008194 #33	ENSCLAG00000009091 #34	FAM171A1 (ENSCLAG00000009809) #35	NMT2 (ENSCLAG00000008204) #36	RPP38 (ENSCLAG00000010194) #37
Degu	MODERN SPECIES	274	ENSODEG00000002030	RBSN (ENSODEG00000001991) #13	MRPS25 (ENSODEG00000001966) #12	NR2C2 (ENSODEG00000001892) #11	ENSODEG00000001861	ENSODEG00000001849	ENSODEG00000001772	TMCC1 (ENSODEG00000001710) #14	PLXND1 (ENSODEG00000003347) #15	RHO (ENSODEG00000003304) #16	IFT122 (ENSODEG00000003013) #17	ENSODEG00000002902 #18	ENSODEG00000002891 ##19	CAND2 (ENSODEG00000002821) #20	TMEM40 (ENSODEG00000002755) #21	RAF1 (ENSODEG00000002734) #22	MKRN2 (ENSODEG00000002702) #23	MKRN2OS (ENSODEG00000002688) #24	ENSODEG00000002676	SLC6A11 (ENSODEG00000002665)	SLC6A1 (ENSODEG00000002644)	ATG7 (ENSODEG00000002299)	ENSODEG00000002124	ENSODEG00000018794	TAMM41 (ENSODEG00000002076)	TIMP4 (ENSODEG00000002023)	ENSODEG00000001988	PPARG (ENSODEG00000002659)	TSEN2 (ENSODEG00000002629)	ENSODEG00000002503	HMCES (ENSODEG00000002476)
Guinea pig	MODERN SPECIES	109	GRIP2 (ENSCPOG00000021047) #7	CCDC174 (ENSCPOG00000039402) #8	C3orf20 (ENSCPOG00000006783) #9	FGD5 (ENSCPOG00000013157) #10	NR2C2 (ENSCPOG00000001512) #11	MRPS25 (ENSCPOG00000020398) #12	RBSN (ENSCPOG00000003200) #13	TMCC1 (ENSCPOG00000009299) #14	PLXND1 (ENSCPOG00000004989) #15	RHO (ENSCPOG00000004984) #16	IFT122 (ENSCPOG00000004975) #17	ENSCPOG00000004970 #18	RPL32 (ENSCPOG00000019967) ##19	CAND2 (ENSCPOG00000023286) #20	TMEM40 (ENSCPOG00000025632) #21	RAF1 (ENSCPOG00000001210) #22	MKRN2 (ENSCPOG00000001208) #23	MKRN2OS (ENSCPOG00000032819) #24	ENSCPOG00000009944 #25	FKBP4 (ENSCPOG00000002453) #26	ITFG2 (ENSCPOG00000021230) #27	ENSCPOG00000005850	ENSCPOG00000031884	ARHGAP21 (ENSCPOG00000004505)	ENKUR (ENSCPOG00000009590)	ENSCPOG00000000291	GPR158 (ENSCPOG00000001565)	ENSCPOG00000034310	ENSCPOG00000013721	ENSCPOG00000039199	GAD2 (ENSCPOG00000013724)
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000000266	ENSHGLG00000000240	ENSHGLG00000040044 #14	ENSHGLG00000040416	RHO (ENSHGLG00000006668) #16	IFT122 (ENSHGLG00000009113) #17	MBD4 (ENSHGLG00000009034) #18	ENSHGLG00000015777	ENSHGLG00000040769 #19	ENSHGLG00000015580 #20	ENSHGLG00000015498 #21	ENSHGLG00000033042	ENSHGLG00000039038	ENSHGLG00000032617	ENSHGLG00000037560	ENSHGLG00000018214 #22	ENSHGLG00000018194 #23	ENSHGLG00000017856 #24	ENSHGLG00000045316	ENSHGLG00000032284 #25	ENSHGLG00000019586 #25	ENSHGLG00000039046	ENSHGLG00000000920	GATA2 (ENSHGLG00000000985)	DNAJB8 (ENSHGLG00000046802)	ENSHGLG00000037886	ENSHGLG00000000094	ENSHGLG00000000122	ENSHGLG00000002369	HRH1 (ENSHGLG00000044045)	ENSHGLG00000045274
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Marmotini	ANCESTRAL SPECIES	49	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00960000190360	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Marmotini_b	ANCESTRAL SPECIES	62	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00960000190360	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Squirrel	MODERN SPECIES	202	GRIP2 (ENSSTOG00000000954) #7	CCDC174 (ENSSTOG00000027414) #8	C3orf20 (ENSSTOG00000002907) #9	FGD5 (ENSSTOG00000005202) #10	NR2C2 (ENSSTOG00000005250) #11	MRPS25 (ENSSTOG00000030962) #12	RBSN (ENSSTOG00000022986) #13	TRH (ENSSTOG00000026247)	TMCC1 (ENSSTOG00000019869) #14	PLXND1 (ENSSTOG00000024621) #15	RHO (ENSSTOG00000028352) #16	IFT122 (ENSSTOG00000004353) #17	MBD4 (ENSSTOG00000020663) #18	ENSSTOG00000026505 #19	CAND2 (ENSSTOG00000023136) #20	RAF1 (ENSSTOG00000025146) #22	MKRN2 (ENSSTOG00000010520) #23	MKRN2OS (ENSSTOG00000031428) #24	TSEN2 (ENSSTOG00000000538)	PPARG (ENSSTOG00000012778)	SYN2 (ENSSTOG00000011519)	TIMP4 (ENSSTOG00000034531)	ENSSTOG00000028589	VGLL4 (ENSSTOG00000025247)	ATG7 (ENSSTOG00000015288)	HRH1 (ENSSTOG00000015286)	SLC6A1 (ENSSTOG00000007598)	SLC6A11 (ENSSTOG00000028999)	ATP2B2 (ENSSTOG00000014026)	SEC13 (ENSSTOG00000014017)	GHRL (ENSSTOG00000022095)
Arctic ground squirrel	MODERN SPECIES	23	NR2C2 (ENSUPAG00010000576) #11	MRPS25 (ENSUPAG00010000567) #12	RBSN (ENSUPAG00010000555) #13	TRH (ENSUPAG00010000545)	TMCC1 (ENSUPAG00010000491) #14	PLXND1 (ENSUPAG00010000023) #15	H1-8 (ENSUPAG00010023069)	RHO (ENSUPAG00010023066) #16	IFT122 (ENSUPAG00010023058) #17	ENSUPAG00010023053 #18	ENSUPAG00010023052 #18	EFCAB12 (ENSUPAG00010023049)	ENSUPAG00010023046 #19	CAND2 (ENSUPAG00010023044) #20	TMEM40 (ENSUPAG00010023040) #21	RAF1 (ENSUPAG00010023038) #22	MKRN2 (ENSUPAG00010023036) #23	MKRN2OS (ENSUPAG00010023035) #24	TSEN2 (ENSUPAG00010023034)	PPARG (ENSUPAG00010023031)	TIMP4 (ENSUPAG00010023029)	SYN2 (ENSUPAG00010023028)	ENSUPAG00010023027	VGLL4 (ENSUPAG00010023024)	ATG7 (ENSUPAG00010023011)	HRH1 (ENSUPAG00010023010)	ENSUPAG00010023009	SLC6A1 (ENSUPAG00010023006)	SLC6A11 (ENSUPAG00010023004)	ATP2B2 (ENSUPAG00010022999)	SEC13 (ENSUPAG00010022998)
Alpin marmot	MODERN SPECIES	40	C3orf20 (ENSMMMG00000011543) #9	FGD5 (ENSMMMG00000011473) #10	NR2C2 (ENSMMMG00000011464) #11	MRPS25 (ENSMMMG00000011452) #12	RBSN (ENSMMMG00000011435) #13	TRH (ENSMMMG00000011424)	TMCC1 (ENSMMMG00000011365) #14	ENSMMMG00000011319 #15	ENSMMMG00000011299	RHO (ENSMMMG00000011272) #16	IFT122 (ENSMMMG00000011068) #17	MBD4 (ENSMMMG00000011043) #18	EFCAB12 (ENSMMMG00000011023)	ENSMMMG00000010997 #19	ENSMMMG00000010993 #20	RAF1 (ENSMMMG00000010957) #22	ENSMMMG00000010950	MKRN2 (ENSMMMG00000010927) #23	MKRN2OS (ENSMMMG00000010915) #24	ENSMMMG00000010907	ENSMMMG00000010899	PPARG (ENSMMMG00000010840)	ENSMMMG00000010687	SYN2 (ENSMMMG00000010440)	TAMM41 (ENSMMMG00000010322)	VGLL4 (ENSMMMG00000010304)	ATG7 (ENSMMMG00000009966)	ENSMMMG00000009925	HRH1 (ENSMMMG00000009921)	ENSMMMG00000009895	SLC6A1 (ENSMMMG00000009856)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	10	NR2C2 (ENSSVLG00005017625) #11	MRPS25 (ENSSVLG00005017966) #12	RBSN (ENSSVLG00005018031) #13	TRH (ENSSVLG00005018181)	ENSSVLG00005018231	TMCC1 (ENSSVLG00005018250) #14	PLXND1 (ENSSVLG00005018384) #15	ENSSVLG00005018771	RHO (ENSSVLG00005018827) #16	IFT122 (ENSSVLG00005018941) #17	MBD4 (ENSSVLG00005019308) #18	EFCAB12 (ENSSVLG00005019404)	ENSSVLG00005019450 ##19	CAND2 (ENSSVLG00005019570) #20	TMEM40 (ENSSVLG00005019760) #21	ENSSVLG00005019978 #22	MKRN2 (ENSSVLG00005020340) #23	MKRN2OS (ENSSVLG00005020454) #24	TSEN2 (ENSSVLG00005020543)	PPARG (ENSSVLG00005020780)	SYN2 (ENSSVLG00005021130)	TIMP4 (ENSSVLG00005021374)	TAMM41 (ENSSVLG00005021448)	ENSSVLG00005021494	VGLL4 (ENSSVLG00005021566)	ATG7 (ENSSVLG00005021683)	HRH1 (ENSSVLG00005021749)	SLC6A1 (ENSSVLG00005021844)	SLC6A11 (ENSSVLG00005022396)	ATP2B2 (ENSSVLG00005022802)	SEC13 (ENSSVLG00005023877)
Eurasian red squirrel	MODERN SPECIES	8	BCO1 (ENSSVLG00005025719)	ENSSVLG00005025763	C16orf46 (ENSSVLG00005014992)	ENSSVLG00005015037	CENPN (ENSSVLG00005015134)	CMC2 (ENSSVLG00005015210)	CDYL2 (ENSSVLG00005015278)	DYNLRB2 (ENSSVLG00005015349)	ENSSVLG00005015446	WWOX (ENSSVLG00005015526)	ENSSVLG00005015573	CLEC3A (ENSSVLG00005015615)	VAT1L (ENSSVLG00005015671)	NUDT7 (ENSSVLG00005015783)	ADAMTS18 (ENSSVLG00005015898)	ENSSVLG00005016092 #22	SYCE1L (ENSSVLG00005016146)	MON1B (ENSSVLG00005016284)	CNTNAP4 (ENSSVLG00005016453)	ENSSVLG00005017621	DUXB (ENSSVLG00005017671)	TERF2IP (ENSSVLG00005017752)	KARS1 (ENSSVLG00005017790)	ADAT1 (ENSSVLG00005017872)	GABARAPL2 (ENSSVLG00005017970)	TMEM231 (ENSSVLG00005018059)	ENSSVLG00005018139	TMEM170A (ENSSVLG00005018166)	CFDP1 (ENSSVLG00005018315)	BCAR1 (ENSSVLG00005018450)	ENSSVLG00005018505
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Kangaroo rat	MODERN SPECIES	331	Ccdc174 (ENSDORG00000007328) #8	4930590J08Rik (ENSDORG00000007329) #9	Fgd5 (ENSDORG00000016297) #10	Nr2c2 (ENSDORG00000007038) #11	Mrps25 (ENSDORG00000026838) #12	Rbsn (ENSDORG00000009815) #13	Tmcc1 (ENSDORG00000026595) #14	Plxnd1 (ENSDORG00000000912) #15	ENSDORG00000026967	Rho (ENSDORG00000000911) #16	Ift122 (ENSDORG00000000906) #17	ENSDORG00000000902 #18	Rpl32 (ENSDORG00000008426) ##19	Cand2 (ENSDORG00000008424) #20	ENSDORG00000023579 #21	Raf1 (ENSDORG00000015622) #22	Mkrn2 (ENSDORG00000015621) #23	Mkrn2os (ENSDORG00000028573) #24	Tsen2 (ENSDORG00000003395)	Pparg (ENSDORG00000003445)	ENSDORG00000009507	Timp4 (ENSDORG00000009509)	Tamm41 (ENSDORG00000002091)	Vgll4 (ENSDORG00000004378)	Atg7 (ENSDORG00000004380)	Slc6a1 (ENSDORG00000016380)	Slc6a11 (ENSDORG00000016390)	Atp2b2 (ENSDORG00000015330)	Sec13 (ENSDORG00000015327)	Ghrl (ENSDORG00000012281)	Tatdn2 (ENSDORG00000012279)
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Muroidea	ANCESTRAL SPECIES	37	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Cricetinae	ANCESTRAL SPECIES	8	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Golden Hamster	MODERN SPECIES	622	Zfp422 (ENSMAUG00000020581)	Alox5 (ENSMAUG00000018983)	ENSMAUG00000021879	ENSMAUG00000008109	Washc2 (ENSMAUG00000020725)	ENSMAUG00000021669 #14	Plxnd1 (ENSMAUG00000021112) #15	H1f8 (ENSMAUG00000011359)	Rho (ENSMAUG00000002081) #16	Ift122 (ENSMAUG00000005778) #17	ENSMAUG00000014245 #18	Efcab12 (ENSMAUG00000010638)	ENSMAUG00000020260	Cand2 (ENSMAUG00000005693) #20	Tmem40 (ENSMAUG00000015454) #21	Raf1 (ENSMAUG00000015447) #22	Mkrn2 (ENSMAUG00000014200) #23	Mkrn2os (ENSMAUG00000010492) #24	ENSMAUG00000013859	ENSMAUG00000012323	ENSMAUG00000020153	Timp4 (ENSMAUG00000018049)	ENSMAUG00000013097	Tamm41 (ENSMAUG00000017519)	Vgll4 (ENSMAUG00000011159)	Atg7 (ENSMAUG00000003276)	Hrh1 (ENSMAUG00000009874)	Slc6a1 (ENSMAUG00000021551)	Slc6a11 (ENSMAUG00000008311)	Atp2b2 (ENSMAUG00000009448)	Sec13 (ENSMAUG00000012999)
Chinese hamster chok1gshd	MODERN SPECIES	144	ENSCGRG00001008362	Alox5 (ENSCGRG00001010128)	Marchf8 (ENSCGRG00001003616)	Zfand4 (ENSCGRG00001023303)	Washc2 (ENSCGRG00001019572)	Tmcc1 (ENSCGRG00001016263) #14	Plxnd1 (ENSCGRG00001007901) #15	H1f8 (ENSCGRG00001024504)	Rho (ENSCGRG00001018161) #16	Ift122 (ENSCGRG00001012761) #17	Mbd4 (ENSCGRG00001003507) #18	Efcab12 (ENSCGRG00001000767)	ENSCGRG00001000039 ##19	Cand2 (ENSCGRG00001024197) #20	Tmem40 (ENSCGRG00001022432) #21	Raf1 (ENSCGRG00001020096) #22	ENSCGRG00001019373 #23	Mkrn2os (ENSCGRG00001018483) #24	Tsen2 (ENSCGRG00001017681)	Pparg (ENSCGRG00001013849)	Timp4 (ENSCGRG00001010158)	Syn2 (ENSCGRG00001007902)	Tamm41 (ENSCGRG00001003506)	Vgll4 (ENSCGRG00001001705)	Atg7 (ENSCGRG00001017070)	Hrh1 (ENSCGRG00001015773)	Slc6a1 (ENSCGRG00001006244)	Slc6a11 (ENSCGRG00001000475)	Atp2b2 (ENSCGRG00001021784)	Sec13 (ENSCGRG00001019327)	Ghrl (ENSCGRG00001018358)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Prairie vole	MODERN SPECIES	84	Alox5 (ENSMOCG00000006115)	ENSMOCG00000002394	ENSMOCG00000018066	Washc2 (ENSMOCG00000018011)	Tmcc1 (ENSMOCG00000009713) #14	Plxnd1 (ENSMOCG00000014026) #15	H1f8 (ENSMOCG00000005594)	Rho (ENSMOCG00000022070) #16	Ift122 (ENSMOCG00000014549) #17	ENSMOCG00000002466 #18	ENSMOCG00000019929 #18	Efcab12 (ENSMOCG00000020496)	ENSMOCG00000015206 #19	Cand2 (ENSMOCG00000012580) #20	Tmem40 (ENSMOCG00000021932) #21	Raf1 (ENSMOCG00000012403) #22	Mkrn2 (ENSMOCG00000015472) #23	Mkrn2os (ENSMOCG00000010265) #24	Tsen2 (ENSMOCG00000020824)	Pparg (ENSMOCG00000017202)	ENSMOCG00000013854	Timp4 (ENSMOCG00000013297)	Syn2 (ENSMOCG00000000368)	Tamm41 (ENSMOCG00000020960)	Vgll4 (ENSMOCG00000012297)	Atg7 (ENSMOCG00000009400)	ENSMOCG00000016658	Hrh1 (ENSMOCG00000009133)	Slc6a1 (ENSMOCG00000011689)	Slc6a11 (ENSMOCG00000010284)	Atp2b2 (ENSMOCG00000022399)
Northern American deer mouse	MODERN SPECIES	16	Alox5 (ENSPEMG00000015300)	Marchf8 (ENSPEMG00000015311)	Zfand4 (ENSPEMG00000008943)	Washc2 (ENSPEMG00000017284)	Tmcc1 (ENSPEMG00000000449) #14	ENSPEMG00000024601	Plxnd1 (ENSPEMG00000008271) #15	H1f8 (ENSPEMG00000011381)	Rho (ENSPEMG00000008463) #16	Ift122 (ENSPEMG00000017389) #17	Mbd4 (ENSPEMG00000006226) #18	Efcab12 (ENSPEMG00000012553)	ENSPEMG00000012965 ##19	ENSPEMG00000029699 ##20	Tmem40 (ENSPEMG00000002944) #21	Raf1 (ENSPEMG00000012728) #22	Mkrn2 (ENSPEMG00000002776) #23	Mkrn2os (ENSPEMG00000012076) #24	Tsen2 (ENSPEMG00000013175)	Pparg (ENSPEMG00000013545)	Timp4 (ENSPEMG00000026166)	Syn2 (ENSPEMG00000016120)	Tamm41 (ENSPEMG00000017033)	Vgll4 (ENSPEMG00000026845)	Atg7 (ENSPEMG00000010473)	Hrh1 (ENSPEMG00000028414)	Slc6a1 (ENSPEMG00000011702)	Slc6a11 (ENSPEMG00000020194)	Atp2b2 (ENSPEMG00000000259)	Sec13 (ENSPEMG00000009433)	Ghrl (ENSPEMG00000001433)
Murinae	ANCESTRAL SPECIES	4	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mus	ANCESTRAL SPECIES	12	ENSGT01060000248581.D.a.b.a.b	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716.h	ENSGT00940000155716.g	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000158282	ENSGT00940000155716.h	ENSGT00940000155716.g	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Mouse	MODERN SPECIES	15	Or13a1 (ENSMUSG00000053391)	Alox5 (ENSMUSG00000025701)	Marchf8 (ENSMUSG00000025702)	Zfand4 (ENSMUSG00000042213)	Washc2 (ENSMUSG00000024104)	Tmcc1 (ENSMUSG00000030126) #14	Plxnd1 (ENSMUSG00000030123) #15	H1f8 (ENSMUSG00000042279)	Rho (ENSMUSG00000030324) #16	Ift122 (ENSMUSG00000030323) #17	Mbd4 (ENSMUSG00000030322) #18	Efcab12 (ENSMUSG00000030321)	Rpl32 (ENSMUSG00000057841) ##19	Cand2 (ENSMUSG00000030319) #20	Tmem40 (ENSMUSG00000059900) #21	Raf1 (ENSMUSG00000000441) #22	Mkrn2 (ENSMUSG00000000439) #23	Mkrn2os (ENSMUSG00000068011) #24	Tsen2 (ENSMUSG00000042389)	Pparg (ENSMUSG00000000440)	Timp4 (ENSMUSG00000030317)	Syn2 (ENSMUSG00000009394)	Tamm41 (ENSMUSG00000030316)	Vgll4 (ENSMUSG00000030315)	Atg7 (ENSMUSG00000030314)	Hrh1 (ENSMUSG00000053004)	Slc6a1 (ENSMUSG00000030310)	Slc6a11 (ENSMUSG00000030307)	Atp2b2 (ENSMUSG00000030302)	Sec13 (ENSMUSG00000030298)	Ghrl (ENSMUSG00000064177)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000156111	ENSGT00940000158282	ENSGT00940000155716.h	ENSGT00940000155716.g	ENSGT00940000153997.b.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Steppe mouse	MODERN SPECIES	3022	Marchf8 (ENSMSIG00000002032)	Zfand4 (ENSMSIG00000001904)	Washc2 (ENSMSIG00000001796)	ENSMSIG00000001776	Tmcc1 (ENSMSIG00000001659) #14	ENSMSIG00000001422 #15	H1f8 (ENSMSIG00000001367)	ENSMSIG00000001359	Rho (ENSMSIG00000001309) #16	Ift122 (ENSMSIG00000000881) #17	Mbd4 (ENSMSIG00000000793) #18	Efcab12 (ENSMSIG00000000741)	Rpl32 (ENSMSIG00000000692) ##19	Cand2 (ENSMSIG00000000651) #20	Tmem40 (ENSMSIG00000000359) #21	Raf1 (ENSMSIG00000000188) #22	ENSMSIG00000031938 #23	Mkrn2os (ENSMSIG00000031937) #24	Tsen2 (ENSMSIG00000031936)	Pparg (ENSMSIG00000031935)	Timp4 (ENSMSIG00000031934)	ENSMSIG00000031933	Syn2 (ENSMSIG00000031932)	ENSMSIG00000031931	ENSMSIG00000031930	ENSMSIG00000031929	Atg7 (ENSMSIG00000031927)
spretus	MODERN SPECIES	15	Alox5 (MGP_SPRETEiJ_G0029798)	Marchf8 (MGP_SPRETEiJ_G0029797)	MGP_SPRETEiJ_G0029796	Zfand4 (MGP_SPRETEiJ_G0029795)	Washc2 (MGP_SPRETEiJ_G0029794)	MGP_SPRETEiJ_G0029793 #14	Plxnd1 (MGP_SPRETEiJ_G0029792) #15	H1f8 (MGP_SPRETEiJ_G0029791)	Rho (MGP_SPRETEiJ_G0029790) #16	Ift122 (MGP_SPRETEiJ_G0029789) #17	Mbd4 (MGP_SPRETEiJ_G0029788) #18	Efcab12 (MGP_SPRETEiJ_G0029787)	MGP_SPRETEiJ_G0029786 #19	Cand2 (MGP_SPRETEiJ_G0029785) #20	Tmem40 (MGP_SPRETEiJ_G0029784) #21	Raf1 (MGP_SPRETEiJ_G0029783) #22	Mkrn2 (MGP_SPRETEiJ_G0029782) #23	Mkrn2os (MGP_SPRETEiJ_G0029781) #24	Tsen2 (MGP_SPRETEiJ_G0029780)	Pparg (MGP_SPRETEiJ_G0029779)	Timp4 (MGP_SPRETEiJ_G0029778)	MGP_SPRETEiJ_G0029777	Syn2 (MGP_SPRETEiJ_G0029776)	Tamm41 (MGP_SPRETEiJ_G0029775)	Vgll4 (MGP_SPRETEiJ_G0029774)	Atg7 (MGP_SPRETEiJ_G0029773)	Hrh1 (MGP_SPRETEiJ_G0029772)	Slc6a1 (MGP_SPRETEiJ_G0029771)	Slc6a11 (MGP_SPRETEiJ_G0029770)	Atp2b2 (MGP_SPRETEiJ_G0029769)	Sec13 (MGP_SPRETEiJ_G0029768)
Ryukyu mouse	MODERN SPECIES	15	Alox5 (MGP_CAROLIEiJ_G0028770)	Marchf8 (MGP_CAROLIEiJ_G0028769)	MGP_CAROLIEiJ_G0028768	Zfand4 (MGP_CAROLIEiJ_G0028767)	Washc2 (MGP_CAROLIEiJ_G0028766)	Tmcc1 (MGP_CAROLIEiJ_G0028765) #14	Plxnd1 (MGP_CAROLIEiJ_G0028764) #15	H1f8 (MGP_CAROLIEiJ_G0028763)	Rho (MGP_CAROLIEiJ_G0028762) #16	Ift122 (MGP_CAROLIEiJ_G0028761) #17	Mbd4 (MGP_CAROLIEiJ_G0028760) #18	Efcab12 (MGP_CAROLIEiJ_G0028759)	MGP_CAROLIEiJ_G0028758 #19	Cand2 (MGP_CAROLIEiJ_G0028757) #20	MGP_CAROLIEiJ_G0028756 #21	Raf1 (MGP_CAROLIEiJ_G0028755) #22	Mkrn2 (MGP_CAROLIEiJ_G0028754) #23	Mkrn2os (MGP_CAROLIEiJ_G0028753) #24	Tsen2 (MGP_CAROLIEiJ_G0028752)	Pparg (MGP_CAROLIEiJ_G0028751)	Timp4 (MGP_CAROLIEiJ_G0028750)	MGP_CAROLIEiJ_G0028749	Syn2 (MGP_CAROLIEiJ_G0028748)	Tamm41 (MGP_CAROLIEiJ_G0028747)	Vgll4 (MGP_CAROLIEiJ_G0028746)	Atg7 (MGP_CAROLIEiJ_G0028745)	Hrh1 (MGP_CAROLIEiJ_G0028744)	Slc6a1 (MGP_CAROLIEiJ_G0028743)	Slc6a11 (MGP_CAROLIEiJ_G0028742)	Atp2b2 (MGP_CAROLIEiJ_G0028741)	Sec13 (MGP_CAROLIEiJ_G0028740)
Shrew mouse	MODERN SPECIES	11	Alox5 (MGP_PahariEiJ_G0022521)	Marchf8 (MGP_PahariEiJ_G0022520)	MGP_PahariEiJ_G0022519	MGP_PahariEiJ_G0022518	Washc2 (MGP_PahariEiJ_G0022517)	Tmcc1 (MGP_PahariEiJ_G0022516) #14	Plxnd1 (MGP_PahariEiJ_G0022515) #15	H1f8 (MGP_PahariEiJ_G0022514)	Rho (MGP_PahariEiJ_G0022513) #16	Ift122 (MGP_PahariEiJ_G0022512) #17	MGP_PahariEiJ_G0022511 #18	Efcab12 (MGP_PahariEiJ_G0022510)	MGP_PahariEiJ_G0022509 #19	Cand2 (MGP_PahariEiJ_G0022508) #20	Tmem40 (MGP_PahariEiJ_G0022507) #21	Raf1 (MGP_PahariEiJ_G0022506) #22	Mkrn2 (MGP_PahariEiJ_G0022505) #23	Mkrn2os (MGP_PahariEiJ_G0022504) #24	Tsen2 (MGP_PahariEiJ_G0022503)	Pparg (MGP_PahariEiJ_G0022502)	Timp4 (MGP_PahariEiJ_G0022501)	MGP_PahariEiJ_G0022500	Syn2 (MGP_PahariEiJ_G0022499)	Tamm41 (MGP_PahariEiJ_G0022498)	Vgll4 (MGP_PahariEiJ_G0022497)	Atg7 (MGP_PahariEiJ_G0022496)	Hrh1 (MGP_PahariEiJ_G0022495)	Slc6a1 (MGP_PahariEiJ_G0022494)	Slc6a11 (MGP_PahariEiJ_G0022493)	Atp2b2 (MGP_PahariEiJ_G0022492)	Sec13 (MGP_PahariEiJ_G0022491)
Rat	MODERN SPECIES	14	ENSRNOG00000066609	Zfand4 (ENSRNOG00000011791)	Washc2c (ENSRNOG00000011653)	LOC680385 (ENSRNOG00000011606)	Tmcc1 (ENSRNOG00000011614) #14	AABR07061825.2 (ENSRNOG00000059964)	Plxnd1 (ENSRNOG00000025209) #15	H1f8 (ENSRNOG00000025251)	Rho (ENSRNOG00000011144) #16	Ift122 (ENSRNOG00000010952) #17	Mbd4 (ENSRNOG00000010919) #18	Efcab12 (ENSRNOG00000026176)	Rpl32 (ENSRNOG00000010746) #19	Cand2 (ENSRNOG00000010473) #20	Tmem40 (ENSRNOG00000010430) #21	Raf1 (ENSRNOG00000010153) #22	Mkrn2 (ENSRNOG00000009176) #23	Mkrn2os (ENSRNOG00000070957) #24	Tsen2 (ENSRNOG00000060175)	Pparg (ENSRNOG00000008839)	Timp4 (ENSRNOG00000007955)	ENSRNOG00000069227	AC128901.1 (ENSRNOG00000028826)	ENSRNOG00000067395	Syn2 (ENSRNOG00000008157)	Tamm41 (ENSRNOG00000007874)	Vgll4 (ENSRNOG00000007822)	Atg7 (ENSRNOG00000007486)	ENSRNOG00000069624	LOC120102367 (ENSRNOG00000067090)	Hrh1 (ENSRNOG00000007420)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1707	Fgd5 (ENSNGAG00000024178) #10	Nr2c2 (ENSNGAG00000022501) #11	Mrps25 (ENSNGAG00000021861) #12	Rbsn (ENSNGAG00000022967) #13	Trh (ENSNGAG00000022332)	Tmcc1 (ENSNGAG00000010573) #14	Plxnd1 (ENSNGAG00000020476) #15	H1f8 (ENSNGAG00000023630)	Rho (ENSNGAG00000020656) #16	Ift122 (ENSNGAG00000022462) #17	ENSNGAG00000017381 #18	Efcab12 (ENSNGAG00000008314)	ENSNGAG00000024001 ##19	Cand2 (ENSNGAG00000024002) #20	Tmem40 (ENSNGAG00000021850) #21	Raf1 (ENSNGAG00000019548) #22	Mkrn2 (ENSNGAG00000012579) #23	Mkrn2os (ENSNGAG00000019573) #24	ENSNGAG00000013561	Pparg (ENSNGAG00000014683)	Timp4 (ENSNGAG00000021746)	Syn2 (ENSNGAG00000022266)	Tamm41 (ENSNGAG00000013592)	Vgll4 (ENSNGAG00000013946)	ENSNGAG00000003030	Hrh1 (ENSNGAG00000021456)	Slc6a1 (ENSNGAG00000015663)	Slc6a11 (ENSNGAG00000013842)	Atp2b2 (ENSNGAG00000015473)	Sec13 (ENSNGAG00000003425)	Ghrl (ENSNGAG00000022045)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	45	Fgd5 (ENSJJAG00000001082) #10	Nr2c2 (ENSJJAG00000016580) #11	Mrps25 (ENSJJAG00000013413) #12	Rbsn (ENSJJAG00000024360) #13	ENSJJAG00000023012	Tmcc1 (ENSJJAG00000019999) #14	ENSJJAG00000020659	Plxnd1 (ENSJJAG00000014069) #15	ENSJJAG00000014828	Rho (ENSJJAG00000022285) #16	Ift122 (ENSJJAG00000020288) #17	ENSJJAG00000016695 #18	ENSJJAG00000021233 #19	Cand2 (ENSJJAG00000018247) #20	Tmem40 (ENSJJAG00000009444) #21	ENSJJAG00000016961 #22	Mkrn2 (ENSJJAG00000019765) #23	Mkrn2os (ENSJJAG00000022652) #24	ENSJJAG00000015646	ENSJJAG00000002861	Pparg (ENSJJAG00000023734)	ENSJJAG00000012036	ENSJJAG00000015072	Timp4 (ENSJJAG00000015654)	Tamm41 (ENSJJAG00000015841)	Vgll4 (ENSJJAG00000017532)	Atg7 (ENSJJAG00000021264)	Hrh1 (ENSJJAG00000012905)	Slc6a1 (ENSJJAG00000013717)	Slc6a11 (ENSJJAG00000008690)	Atp2b2 (ENSJJAG00000009628)
Lesser Egyptian jerboa	MODERN SPECIES	89	Gkn3 (ENSJJAG00000008849)	Bmp10 (ENSJJAG00000015538)	Arhgap25 (ENSJJAG00000019832)	Prokr1 (ENSJJAG00000012059)	Nid1 (ENSJJAG00000016000)	Gpr137b (ENSJJAG00000017509)	Edaradd (ENSJJAG00000019933)	ENSJJAG00000008800	ENSJJAG00000015235	ENSJJAG00000022730	ENSJJAG00000013416	Actn2 (ENSJJAG00000016245)	ENSJJAG00000012786	Mtr (ENSJJAG00000019411)	Ryr2 (ENSJJAG00000023141)	ENSJJAG00000012477 #22	ENSJJAG00000014102	Chrm3 (ENSJJAG00000001306)	ENSJJAG00000022159	Zmynd11 (ENSJJAG00000013493)	Dip2c (ENSJJAG00000022563)	ENSJJAG00000015934	Larp4b (ENSJJAG00000020847)	Gtpbp4 (ENSJJAG00000010021)	ENSJJAG00000010808	ENSJJAG00000023023	Wdr37 (ENSJJAG00000001407)	Adarb2 (ENSJJAG00000015849)	ENSJJAG00000023250	ENSJJAG00000023540	ENSJJAG00000005077
Lagomorpha	ANCESTRAL SPECIES	105	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000156027	ENSGT00940000157569
Pika	MODERN SPECIES	1896															ENSOPRG00000003562 #20	RAF1 (ENSOPRG00000003522) #22	MKRN2 (ENSOPRG00000003501) #23	TSEN2 (ENSOPRG00000003456)	PPARG (ENSOPRG00000003439)	TIMP4 (ENSOPRG00000003424)	SYN2 (ENSOPRG00000003375)	TAMM41 (ENSOPRG00000003357)
Rabbit	MODERN SPECIES	20	FGD5 (ENSOCUG00000006961) #10	NR2C2 (ENSOCUG00000006975) #11	MRPS25 (ENSOCUG00000006984) #12	RBSN (ENSOCUG00000006988) #13	TRH (ENSOCUG00000006337)	TMCC1 (ENSOCUG00000013071) #14	PLXND1 (ENSOCUG00000013049) #15	ENSOCUG00000029379	RHO (ENSOCUG00000013036) #16	IFT122 (ENSOCUG00000013015) #17	MBD4 (ENSOCUG00000013006) #18	ENSOCUG00000012999	ENSOCUG00000023407 ##19	CAND2 (ENSOCUG00000009266) #20	ENSOCUG00000031173 #21	RAF1 (ENSOCUG00000014175) #22	MKRN2 (ENSOCUG00000014171) #23	MKRN2OS (ENSOCUG00000033126) #24	TSEN2 (ENSOCUG00000013203)	PPARG (ENSOCUG00000013194)	ENSOCUG00000015932	TIMP4 (ENSOCUG00000015952)	VGLL4 (ENSOCUG00000001911)	ATG7 (ENSOCUG00000001908)	ENSOCUG00000025657	SLC6A11 (ENSOCUG00000001627)	LZTFL1 (ENSOCUG00000010140)	SLC6A20 (ENSOCUG00000004216)	SACM1L (ENSOCUG00000026080)	LIMD1 (ENSOCUG00000001984)	ENSOCUG00000024922
Tree shrew	MODERN SPECIES	2688																RAF1 (ENSTBEG00000012253) #22	ENSTBEG00000012118 #23	TSEN2 (ENSTBEG00000011740)
Primates	ANCESTRAL SPECIES	1	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Haplorrhini	ANCESTRAL SPECIES	5													ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B.v
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a.e.b #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027	ENSGT00940000157569
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a.d #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.a.a.b.b	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027	ENSGT00940000157569
Sooty mangabey	MODERN SPECIES	650	SLC6A6 (ENSCATG00000027535)	ENSCATG00000039421	XPC (ENSCATG00000036725)	TMEM43 (ENSCATG00000038308)	WNT7A (ENSCATG00000033711)	ENSCATG00000033105	FBLN2 (ENSCATG00000038061)	HDAC11 (ENSCATG00000026123)	NUP210 (ENSCATG00000035260)	IQSEC1 (ENSCATG00000037864)	RPL32 (ENSCATG00000038198) ##19	CAND2 (ENSCATG00000038720) #20	TMEM40 (ENSCATG00000027847) #21	ENSCATG00000031525	ENSCATG00000001547	ENSCATG00000035852 #22	MKRN2 (ENSCATG00000041591) #23	MKRN2OS (ENSCATG00000040481) #24	TSEN2 (ENSCATG00000031911)	PPARG (ENSCATG00000022947)	ENSCATG00000017268	TIMP4 (ENSCATG00000034145)	SYN2 (ENSCATG00000031791)	ENSCATG00000042881	ENSCATG00000031162	TAMM41 (ENSCATG00000033399)	VGLL4 (ENSCATG00000041543)	ATG7 (ENSCATG00000034745)	HRH1 (ENSCATG00000000316)	ENSCATG00000031939	SLC6A1 (ENSCATG00000019250)
Drill	MODERN SPECIES	874	GRIP2 (ENSMLEG00000029206) #7	SLC6A6 (ENSMLEG00000040687)	LSM3 (ENSMLEG00000036162)	XPC (ENSMLEG00000041682)	TMEM43 (ENSMLEG00000035818)	ENSMLEG00000031201	WNT7A (ENSMLEG00000042427)	FBLN2 (ENSMLEG00000040866)	HDAC11 (ENSMLEG00000038310)	NUP210 (ENSMLEG00000038717)	IQSEC1 (ENSMLEG00000035708)	RPL32 (ENSMLEG00000033655) ##19	CAND2 (ENSMLEG00000034596) #20	TMEM40 (ENSMLEG00000039986) #21	ENSMLEG00000039626	RAF1 (ENSMLEG00000029839) #22	MKRN2 (ENSMLEG00000006880) #23	MKRN2OS (ENSMLEG00000006675) #24	TSEN2 (ENSMLEG00000038210)	PPARG (ENSMLEG00000043422)	TIMP4 (ENSMLEG00000040251)	SYN2 (ENSMLEG00000030880)
Olive baboon	MODERN SPECIES	11	GRIP2 (ENSPANG00000010990) #7	SLC6A6 (ENSPANG00000009556)	LSM3 (ENSPANG00000009378)	XPC (ENSPANG00000004175)	TMEM43 (ENSPANG00000012906)	CHCHD4 (ENSPANG00000025946)	WNT7A (ENSPANG00000046909)	ENSPANG00000007694	ENSPANG00000047403	HDAC11 (ENSPANG00000024163)	NUP210 (ENSPANG00000006878)	IQSEC1 (ENSPANG00000006877)	ENSPANG00000007693 #19	CAND2 (ENSPANG00000018464) #20	TMEM40 (ENSPANG00000014208) #21	RAF1 (ENSPANG00000008568) #22	ENSPANG00000035680	MKRN2 (ENSPANG00000021307) #23	TSEN2 (ENSPANG00000013415)	MKRN2OS (ENSPANG00000008481) #24	PPARG (ENSPANG00000016461)	SYN2 (ENSPANG00000024762)	TIMP4 (ENSPANG00000001070)	ENSPANG00000045955	ENSPANG00000031360	TAMM41 (ENSPANG00000025444)	VGLL4 (ENSPANG00000024761)	ATG7 (ENSPANG00000019142)	HRH1 (ENSPANG00000031157)	SLC6A1 (ENSPANG00000009643)	SLC6A11 (ENSPANG00000009913)
Macaca	ANCESTRAL SPECIES	5	ENSGT00910000146921	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.a	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.a.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000009405.b.c.b.b	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00940000156027	ENSGT00940000157569
Pig-tailed macaque	MODERN SPECIES	546	GRIP2 (ENSMNEG00000044173) #7	SLC6A6 (ENSMNEG00000040859)	ENSMNEG00000043632	XPC (ENSMNEG00000038400)	TMEM43 (ENSMNEG00000032802)	ENSMNEG00000040402	WNT7A (ENSMNEG00000037464)	FBLN2 (ENSMNEG00000035537)	HDAC11 (ENSMNEG00000040546)	NUP210 (ENSMNEG00000041495)	ENSMNEG00000029455	IQSEC1 (ENSMNEG00000042270)	RPL32 (ENSMNEG00000030893) ##19	CAND2 (ENSMNEG00000044168) #20	TMEM40 (ENSMNEG00000027829) #21	RAF1 (ENSMNEG00000040519) #22	MKRN2 (ENSMNEG00000031197) #23	MKRN2OS (ENSMNEG00000034066) #24	TSEN2 (ENSMNEG00000025898)	PPARG (ENSMNEG00000028217)	TIMP4 (ENSMNEG00000028992)	SYN2 (ENSMNEG00000033226)	ENSMNEG00000024024	ENSMNEG00000042157	TAMM41 (ENSMNEG00000040547)	VGLL4 (ENSMNEG00000039421)	ATG7 (ENSMNEG00000028392)	HRH1 (ENSMNEG00000008240)	ENSMNEG00000030516	SLC6A1 (ENSMNEG00000031841)	SLC6A11 (ENSMNEG00000031997)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.r	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.a.e.b #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT01100000263493.a.b.a.b.a.a.b.a.b.b.b.a.b.b.a.a.b.a.a	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.v
Rhesus	MODERN SPECIES	11	CCDC174 (ENSMMUG00000044822) #8	ENSMMUG00000062011	GRIP2 (ENSMMUG00000006342) #7	SLC6A6 (ENSMMUG00000006340)	TMEM43 (ENSMMUG00000023124)	XPC (ENSMMUG00000023125)	WNT7A (ENSMMUG00000018445)	FBLN2 (ENSMMUG00000017659)	HDAC11 (ENSMMUG00000001369)	ENSMMUG00000056487	NUP210 (ENSMMUG00000015979)	IQSEC1 (ENSMMUG00000001342)	RPL32 (ENSMMUG00000001340) ##19	CAND2 (ENSMMUG00000001339) #20	TMEM40 (ENSMMUG00000010276) #21	RAF1 (ENSMMUG00000007450) #22	MKRN2 (ENSMMUG00000009536) #23	MKRN2OS (ENSMMUG00000031993) #24	TSEN2 (ENSMMUG00000007195)	PPARG (ENSMMUG00000007191)	TIMP4 (ENSMMUG00000001127)	SYN2 (ENSMMUG00000001120)	ENSMMUG00000055179	TAMM41 (ENSMMUG00000013372)	ENSMMUG00000062782	VGLL4 (ENSMMUG00000021806)	ATG7 (ENSMMUG00000021804)	HRH1 (ENSMMUG00000056308)	SLC6A1 (ENSMMUG00000005917)	SLC6A11 (ENSMMUG00000005916)	ATP2B2 (ENSMMUG00000019938)
Crab-eating macaque	MODERN SPECIES	11	GRIP2 (ENSMFAG00000035973) #7	SLC6A6 (ENSMFAG00000038570)	LSM3 (ENSMFAG00000063615)	XPC (ENSMFAG00000031847)	TMEM43 (ENSMFAG00000047872)	ENSMFAG00000044351	WNT7A (ENSMFAG00000044809)	FBLN2 (ENSMFAG00000003835)	HDAC11 (ENSMFAG00000036363)	ENSMFAG00000058794	NUP210 (ENSMFAG00000044461)	IQSEC1 (ENSMFAG00000043873)	ENSMFAG00000045190 #19	CAND2 (ENSMFAG00000044298) #20	TMEM40 (ENSMFAG00000039365) #21	RAF1 (ENSMFAG00000038061) #22	ENSMFAG00000051059	MKRN2 (ENSMFAG00000035845) #23	MKRN2OS (ENSMFAG00000031892) #24	TSEN2 (ENSMFAG00000038583)	PPARG (ENSMFAG00000034317)	TIMP4 (ENSMFAG00000052548)	ENSMFAG00000021078	SYN2 (ENSMFAG00000041997)	ENSMFAG00000059255	TAMM41 (ENSMFAG00000033931)	VGLL4 (ENSMFAG00000009745)	ATG7 (ENSMFAG00000040779)	HRH1 (ENSMFAG00000030336)	SLC6A1 (ENSMFAG00000007438)	SLC6A11 (ENSMFAG00000034176)
Vervet Monkey	MODERN SPECIES	14	C3orf20 (ENSCSAG00000009277) #9	CCDC174 (ENSCSAG00000009294) #8	GRIP2 (ENSCSAG00000009353) #7	SLC6A6 (ENSCSAG00000009391)	XPC (ENSCSAG00000009411)	TMEM43 (ENSCSAG00000009426)	CHCHD4 (ENSCSAG00000009431)	WNT7A (ENSCSAG00000009439)	FBLN2 (ENSCSAG00000009449)	HDAC11 (ENSCSAG00000009462)	NUP210 (ENSCSAG00000009474)	IQSEC1 (ENSCSAG00000009482)	RPL32 (ENSCSAG00000009485) ##19	CAND2 (ENSCSAG00000009557) #20	TMEM40 (ENSCSAG00000009604) #21	RAF1 (ENSCSAG00000009721) #22	MKRN2 (ENSCSAG00000009754) #23	MKRN2OS (ENSCSAG00000009764) #24	TSEN2 (ENSCSAG00000009822)	PPARG (ENSCSAG00000009839)	TIMP4 (ENSCSAG00000009845)	SYN2 (ENSCSAG00000009855)	TAMM41 (ENSCSAG00000009866)	VGLL4 (ENSCSAG00000009873)	ATG7 (ENSCSAG00000009887)	HRH1 (ENSCSAG00000018810)	SLC6A1 (ENSCSAG00000009912)	SLC6A11 (ENSCSAG00000009991)	ENSCSAG00000010009	ATP2B2 (ENSCSAG00000010018)	SEC13 (ENSCSAG00000010026)
Rhinopithecus	ANCESTRAL SPECIES	113																ENSGT00940000156084.bb #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273.r	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00910000148924	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.b	ENSGT00910000148795	ENSGT00940000156027
Black snub-nosed monkey	MODERN SPECIES	1833															ENSRBIG00000027349	ENSRBIG00000029284 #22	MKRN2 (ENSRBIG00000039128) #23	MKRN2OS (ENSRBIG00000033018) #24	TSEN2 (ENSRBIG00000033133)	PPARG (ENSRBIG00000042269)
Golden snub-nosed monkey	MODERN SPECIES	2016																ENSRROG00000041930 #22	MKRN2 (ENSRROG00000033767) #23	MKRN2OS (ENSRROG00000037999) #24	TSEN2 (ENSRROG00000041156)	ENSRROG00000034587	PPARG (ENSRROG00000044807)	TIMP4 (ENSRROG00000043357)	SYN2 (ENSRROG00000040768)	ENSRROG00000042628	TAMM41 (ENSRROG00000034628)	VGLL4 (ENSRROG00000032842)	ENSRROG00000038335	ATG7 (ENSRROG00000041008)	HRH1 (ENSRROG00000012382)	ENSRROG00000044510	SLC6A1 (ENSRROG00000040161)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679	ENSGT00390000016356	ENSGT00940000157975	ENSGT01030000234629.D	ENSGT00390000011073	ENSGT00390000010564	ENSGT00940000153680.a	ENSGT00390000018687	ENSGT01030000234590.A.a.a	ENSGT00940000160019	ENSGT00940000157384	ENSGT00940000160780	ENSGT00940000161784	ENSGT00940000156084.cb #22	ENSGT01030000234598.a.a.a	ENSGT00940000160853	ENSGT00730000110943.C	ENSGT00730000111453	ENSGT00940000160658	ENSGT00390000012807	ENSGT00940000158330	ENSGT00390000016972.a.b.a.b.a	ENSGT00940000166255	ENSGT00730000111263	ENSGT00390000016972.a.a.a	ENSGT00390000008796
Rhinopithecus	ANCESTRAL SPECIES	150	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679	ENSGT00390000016356.h	ENSGT00940000157975	ENSGT01030000234629.D	ENSGT00390000011073	ENSGT00390000010564	ENSGT00940000153680.a	ENSGT00390000018687	ENSGT01030000234590.A.a.a	ENSGT00940000160019	ENSGT00940000157384	ENSGT00940000160780	ENSGT00940000161784	ENSGT00940000156084.cb #22	ENSGT01030000234598.a.a.a	ENSGT00940000160853	ENSGT00730000110943.C	ENSGT00730000111453	ENSGT00940000160658	ENSGT00390000012807	ENSGT00940000158330	ENSGT00730000111263	ENSGT00390000016972.a.a.a	ENSGT00390000008796
Golden snub-nosed monkey	MODERN SPECIES	2255	PIGX (ENSRROG00000036720)	CEP19 (ENSRROG00000029243)	NRROS (ENSRROG00000001687)	ENSRROG00000024361	FBXO45 (ENSRROG00000033207)	WDR53 (ENSRROG00000037786)	SMCO1 (ENSRROG00000030631)	RNF168 (ENSRROG00000043861)	UBXN7 (ENSRROG00000042179)	ENSRROG00000035740	DYNLT2B (ENSRROG00000036540)	PCYT1A (ENSRROG00000032721)	ENSRROG00000042812	SLC51A (ENSRROG00000031924)	ZDHHC19 (ENSRROG00000027961)	ENSRROG00000034209 #22	TFRC (ENSRROG00000028609)	TNK2 (ENSRROG00000036469)	ENSRROG00000044352	MUC20 (ENSRROG00000025108)	RUBCN (ENSRROG00000008068)	FYTTD1 (ENSRROG00000014194)	LRCH3 (ENSRROG00000045445)	IQCG (ENSRROG00000001712)	RPL35A (ENSRROG00000008769)	LMLN (ENSRROG00000028339)
Black snub-nosed monkey	MODERN SPECIES	182																ENSRBIG00000037526 #22	TFRC (ENSRBIG00000042357)	TNK2 (ENSRBIG00000043455)
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679	ENSGT00390000016356	ENSGT00940000157975	ENSGT01030000234629.D	ENSGT00390000011073	ENSGT00390000010564	ENSGT00940000153680.a	ENSGT00390000018687	ENSGT01030000234590.A.a.a	ENSGT00940000160019	ENSGT00940000157384	ENSGT00940000160780	ENSGT00940000161784	ENSGT00940000156084.cb #22	ENSGT01030000234598.a.a.a	ENSGT00940000160853	ENSGT00730000110943.C	ENSGT00730000111453	ENSGT00940000160658	ENSGT00390000012807	ENSGT00940000158330	ENSGT00390000016972.a.b.a.b.a	ENSGT00940000166255	ENSGT00730000111263	ENSGT00390000016972.a.a.a	ENSGT00390000008796
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679	ENSGT00390000016356	ENSGT00940000157975	ENSGT01030000234629.D	ENSGT00390000011073	ENSGT00390000010564	ENSGT00940000153680.a	ENSGT00390000018687	ENSGT01030000234590.A.a.a	ENSGT00940000160019	ENSGT00940000157384	ENSGT00940000160780	ENSGT00940000161784	ENSGT00940000156084.cb #22	ENSGT01030000234598.a.a.a	ENSGT00940000160853	ENSGT00730000110943.C	ENSGT00730000111453	ENSGT00940000160658	ENSGT00390000012807	ENSGT00940000158330	ENSGT00390000016972.a.b.a.b.a	ENSGT00940000166255	ENSGT00730000111263	ENSGT00390000016972.a.a.a	ENSGT00390000008796	ENSGT00390000016972.a.b.a.b.b
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679	ENSGT00390000016356	ENSGT00940000157975	ENSGT01030000234629.D	ENSGT00390000011073	ENSGT00390000010564	ENSGT00940000153680.a	ENSGT00390000018687	ENSGT01030000234590.A.a.a	ENSGT00940000160019	ENSGT00940000157384	ENSGT00940000160780	ENSGT00940000161784	ENSGT00940000156084.cb #22	ENSGT01030000234598.a.a.a	ENSGT00940000160853	ENSGT00730000110943.C	ENSGT00730000111453	ENSGT00940000160658	ENSGT00390000012807	ENSGT00940000158330	ENSGT00730000111263	ENSGT00390000016972.a.a.a	ENSGT00390000008796	ENSGT00390000016972.a.b.a.b.b
Cercopithecinae_d	ANCESTRAL SPECIES	16	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679	ENSGT00390000016356	ENSGT00940000157975	ENSGT01030000234629.D	ENSGT00390000011073	ENSGT00390000010564	ENSGT00940000153680.a	ENSGT00390000018687	ENSGT01030000234590.A.a.a	ENSGT00940000160019	ENSGT00940000157384	ENSGT00940000160780	ENSGT00940000161784	ENSGT00940000156084.cb #22	ENSGT01030000234598.a.a.a	ENSGT00940000160853	ENSGT00730000110943.C	ENSGT00730000111453	ENSGT00940000160658	ENSGT00390000012807	ENSGT00940000158330	ENSGT00730000111263	ENSGT00390000016972.a.a.a	ENSGT00390000008796	ENSGT00390000016972.a.b.a.b.b
Sooty mangabey	MODERN SPECIES	458	SENP5 (ENSCATG00000037221)	PAK2 (ENSCATG00000039395)	PIGX (ENSCATG00000037075)	CEP19 (ENSCATG00000041426)	NRROS (ENSCATG00000016167)	FBXO45 (ENSCATG00000043844)	WDR53 (ENSCATG00000038586)	SMCO1 (ENSCATG00000036930)	RNF168 (ENSCATG00000036530)	UBXN7 (ENSCATG00000020457)	TM4SF19 (ENSCATG00000039519)	DYNLT2B (ENSCATG00000008923)	PCYT1A (ENSCATG00000043705)	SLC51A (ENSCATG00000037449)	ZDHHC19 (ENSCATG00000034893)	ENSCATG00000029445 #22	TFRC (ENSCATG00000034982)	TNK2 (ENSCATG00000044992)	ENSCATG00000033328	MUC20 (ENSCATG00000040657)	RUBCN (ENSCATG00000039381)	FYTTD1 (ENSCATG00000037016)	LRCH3 (ENSCATG00000042245)	IQCG (ENSCATG00000044896)	RPL35A (ENSCATG00000018648)	LMLN (ENSCATG00000039980)	ENSCATG00000030636
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000155615 #7	ENSGT00940000154583.i	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266.a	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000155615 #7	ENSGT00940000154583.i	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266.a	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000154583.i	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00910000147988	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00940000153309.c.a.e.b	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266.a	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000155615 #7	ENSGT00940000154583.i	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00940000153309.c.a.e.b	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266.a	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Pan	ANCESTRAL SPECIES	2	ENSGT00940000154583.i	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.q.a.d	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00940000153309.c.a.e.b	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266.a	ENSGT00940000158273	ENSGT00910000148097	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000016970.h	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00390000013132.q.a.c	ENSGT00940000156027	ENSGT00940000157569
Bonobo	MODERN SPECIES	16	LSM3 (ENSPPAG00000034074)	XPC (ENSPPAG00000043453)	TMEM43 (ENSPPAG00000000804)	CHCHD4 (ENSPPAG00000032925)	WNT7A (ENSPPAG00000030187)	FBLN2 (ENSPPAG00000015671)	HDAC11 (ENSPPAG00000037567)	NUP210 (ENSPPAG00000037715)	ENSPPAG00000028546	IQSEC1 (ENSPPAG00000036448)	RPL32 (ENSPPAG00000008188) ##19	CAND2 (ENSPPAG00000004317) #20	ENSPPAG00000036413	TMEM40 (ENSPPAG00000019163) #21	ENSPPAG00000024005	RAF1 (ENSPPAG00000035239) #22	MKRN2 (ENSPPAG00000036523) #23	MKRN2OS (ENSPPAG00000032216) #24	TSEN2 (ENSPPAG00000035317)	PPARG (ENSPPAG00000029006)	ENSPPAG00000028973	ENSPPAG00000030837	TIMP4 (ENSPPAG00000036078)	SYN2 (ENSPPAG00000038622)	ENSPPAG00000040309	TAMM41 (ENSPPAG00000037692)	VGLL4 (ENSPPAG00000035709)	ATG7 (ENSPPAG00000040386)	HRH1 (ENSPPAG00000023416)	SLC6A1 (ENSPPAG00000042842)	SLC6A11 (ENSPPAG00000039217)
Chimpanzee	MODERN SPECIES	16	SLC6A6 (ENSPTRG00000014651)	LSM3 (ENSPTRG00000014650)	XPC (ENSPTRG00000014649)	TMEM43 (ENSPTRG00000014648)	CHCHD4 (ENSPTRG00000014647)	WNT7A (ENSPTRG00000046824)	FBLN2 (ENSPTRG00000014642)	HDAC11 (ENSPTRG00000014641)	NUP210 (ENSPTRG00000014640)	ENSPTRG00000046540	IQSEC1 (ENSPTRG00000014639)	ENSPTRG00000050657 #19	CAND2 (ENSPTRG00000014637) #20	ENSPTRG00000051489	TMEM40 (ENSPTRG00000014636) #21	RAF1 (ENSPTRG00000014635) #22	MKRN2 (ENSPTRG00000014634) #23	MKRN2OS (ENSPTRG00000046408) #24	TSEN2 (ENSPTRG00000014633)	PPARG (ENSPTRG00000014632)	ENSPTRG00000045342	ENSPTRG00000043822	TIMP4 (ENSPTRG00000014630)	SYN2 (ENSPTRG00000052430)	ENSPTRG00000049448	TAMM41 (ENSPTRG00000014628)	VGLL4 (ENSPTRG00000014626)	ATG7 (ENSPTRG00000014625)	HRH1 (ENSPTRG00000030304)	ENSPTRG00000050374	SLC6A1 (ENSPTRG00000014622)
Human	MODERN SPECIES	15	GRIP2 (ENSG00000144596) #7	SLC6A6 (ENSG00000131389)	LSM3 (ENSG00000170860)	XPC (ENSG00000154767)	TMEM43 (ENSG00000170876)	CHCHD4 (ENSG00000163528)	WNT7A (ENSG00000154764)	FBLN2 (ENSG00000163520)	HDAC11 (ENSG00000163517)	NUP210 (ENSG00000132182)	IQSEC1 (ENSG00000144711)	RPL32 (ENSG00000144713) ##19	ENSG00000289809	CAND2 (ENSG00000144712) #20	TMEM40 (ENSG00000088726) #21	RAF1 (ENSG00000132155) #22	MKRN2 (ENSG00000075975) #23	MKRN2OS (ENSG00000225526) #24	TSEN2 (ENSG00000154743)	PPARG (ENSG00000132170)	TIMP4 (ENSG00000157150)	SYN2 (ENSG00000157152)	TAMM41 (ENSG00000144559)	VGLL4 (ENSG00000144560)	ATG7 (ENSG00000197548)	HRH1 (ENSG00000196639)	SLC6A1 (ENSG00000157103)	SLC6A11 (ENSG00000132164)	ATP2B2 (ENSG00000157087)	SEC13 (ENSG00000157020)	GHRL (ENSG00000157017)
Gorilla	MODERN SPECIES	16	SLC6A6 (ENSGGOG00000013384)	LSM3 (ENSGGOG00000010006)	XPC (ENSGGOG00000009997)	TMEM43 (ENSGGOG00000016577)	CHCHD4 (ENSGGOG00000024077)	WNT7A (ENSGGOG00000012654)	ENSGGOG00000042871	FBLN2 (ENSGGOG00000011561)	HDAC11 (ENSGGOG00000007735)	NUP210 (ENSGGOG00000015096)	IQSEC1 (ENSGGOG00000001008)	RPL32 (ENSGGOG00000043568) ##19	CAND2 (ENSGGOG00000001004) #20	ENSGGOG00000021954	TMEM40 (ENSGGOG00000028438) #21	RAF1 (ENSGGOG00000023025) #22	MKRN2 (ENSGGOG00000000429) #23	ENSGGOG00000041526 #24	TSEN2 (ENSGGOG00000012488)	PPARG (ENSGGOG00000013117)	ENSGGOG00000043543	ENSGGOG00000038928	ENSGGOG00000038254	TIMP4 (ENSGGOG00000009761)	SYN2 (ENSGGOG00000009751)	ENSGGOG00000039682	VGLL4 (ENSGGOG00000003500)	ATG7 (ENSGGOG00000003493)	HRH1 (ENSGGOG00000038168)	ENSGGOG00000016573	SLC6A1 (ENSGGOG00000000382)
Orangutan	MODERN SPECIES	16	CCDC174 (ENSPPYG00000013405) #8	GRIP2 (ENSPPYG00000013404) #7	SLC6A6 (ENSPPYG00000013403)	LSM3 (ENSPPYG00000013402)	XPC (ENSPPYG00000013401)	TMEM43 (ENSPPYG00000013400)	CHCHD4 (ENSPPYG00000025890)	WNT7A (ENSPPYG00000013397)	FBLN2 (ENSPPYG00000013396)	HDAC11 (ENSPPYG00000013395)	NUP210 (ENSPPYG00000013394)	IQSEC1 (ENSPPYG00000013393)	ENSPPYG00000037343 #19	CAND2 (ENSPPYG00000013390) #20	TMEM40 (ENSPPYG00000013389) #21	RAF1 (ENSPPYG00000013388) #22	MKRN2 (ENSPPYG00000013387) #23	ENSPPYG00000013631	STX19 (ENSPPYG00000013630)	ARL13B (ENSPPYG00000013629)	DHFR2 (ENSPPYG00000013628)	NSUN3 (ENSPPYG00000037583)	ENSPPYG00000013626	EPHA6 (ENSPPYG00000013624)	ARL6 (ENSPPYG00000013623)	CRYBG3 (ENSPPYG00000033155)	RIOX2 (ENSPPYG00000013621)	GABRR3 (ENSPPYG00000013620)	ENSPPYG00000013618	OR5K1 (ENSPPYG00000013616)	OR5K2 (ENSPPYG00000013615)
Gibbon	MODERN SPECIES	13	GRIP2 (ENSNLEG00000005114) #7	SLC6A6 (ENSNLEG00000005084)	LSM3 (ENSNLEG00000005079)	XPC (ENSNLEG00000005000)	TMEM43 (ENSNLEG00000004956)	CHCHD4 (ENSNLEG00000029809)	ENSNLEG00000004941	FBLN2 (ENSNLEG00000004881)	HDAC11 (ENSNLEG00000004853)	NUP210 (ENSNLEG00000004799)	IQSEC1 (ENSNLEG00000004793)	ENSNLEG00000004798	ENSNLEG00000035616 ##19	CAND2 (ENSNLEG00000004774) #20	TMEM40 (ENSNLEG00000004755) #21	RAF1 (ENSNLEG00000004732) #22	MKRN2 (ENSNLEG00000004711) #23	MKRN2OS (ENSNLEG00000030256) #24	TSEN2 (ENSNLEG00000004696)	PPARG (ENSNLEG00000004650)	ENSNLEG00000029797	ENSNLEG00000004578	TIMP4 (ENSNLEG00000004638)	ENSNLEG00000004559	VGLL4 (ENSNLEG00000004535)	ATG7 (ENSNLEG00000027005)	HRH1 (ENSNLEG00000018917)	ENSNLEG00000030870	SLC6A1 (ENSNLEG00000026605)	SLC6A11 (ENSNLEG00000004525)	ENSNLEG00000026798
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.p	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.a.b ##19	ENSGT00940000158890.q	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509.e	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.v	ENSGT00910000147252
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.p	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000158890.q	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509.e	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.v	ENSGT00910000147252
Cebidae_a	ANCESTRAL SPECIES	47	ENSGT00910000146921	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132.p	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509.e	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.v	ENSGT00910000147252
Bolivian squirrel monkey	MODERN SPECIES	62	ENSSBOG00000024248	PLAAT1 (ENSSBOG00000030423)	ATP13A5 (ENSSBOG00000030531)	ATP13A4 (ENSSBOG00000032487)	OPA1 (ENSSBOG00000021973)	HES1 (ENSSBOG00000028215)	ENSSBOG00000033814	CPN2 (ENSSBOG00000014283)	LRRC15 (ENSSBOG00000031469)	ATP13A3 (ENSSBOG00000005544)	TMEM44 (ENSSBOG00000020794)	LSG1 (ENSSBOG00000034938)	FAM43A (ENSSBOG00000018424)	XXYLT1 (ENSSBOG00000034641)	ACAP2 (ENSSBOG00000029437)	RAF1 (ENSSBOG00000015492) #22	MKRN2 (ENSSBOG00000034434) #23	MKRN2OS (ENSSBOG00000033896) #24	TSEN2 (ENSSBOG00000035499)	PPARG (ENSSBOG00000005712)	ENSSBOG00000030292	TIMP4 (ENSSBOG00000032293)	TAMM41 (ENSSBOG00000034374)	VGLL4 (ENSSBOG00000026167)	ATG7 (ENSSBOG00000024304)	HRH1 (ENSSBOG00000015886)	SLC6A1 (ENSSBOG00000022090)	SLC6A11 (ENSSBOG00000029132)	ATP2B2 (ENSSBOG00000020057)	ENSSBOG00000020409	ENSSBOG00000023709
Capuchin	MODERN SPECIES	281												IQSEC1 (ENSCCAG00000024388)	RPL32 (ENSCCAG00000025373) ##19	CAND2 (ENSCCAG00000032849) #20	TMEM40 (ENSCCAG00000020743) #21	RAF1 (ENSCCAG00000023070) #22	MKRN2 (ENSCCAG00000019802) #23	ENSCCAG00000022711	MKRN2OS (ENSCCAG00000031553) #24	TSEN2 (ENSCCAG00000037851)	PPARG (ENSCCAG00000027364)	SYN2 (ENSCCAG00000034848)	TIMP4 (ENSCCAG00000035892)	TAMM41 (ENSCCAG00000025773)	VGLL4 (ENSCCAG00000032615)	ATG7 (ENSCCAG00000035255)	SLC6A1 (ENSCCAG00000026677)	SLC6A11 (ENSCCAG00000030058)	ATP2B2 (ENSCCAG00000032907)	SEC13 (ENSCCAG00000026715)	GHRL (ENSCCAG00000022227)
Marmoset	MODERN SPECIES	6	SLC6A6 (ENSCJAG00000016992)	ENSCJAG00000079599	ENSCJAG00000042664	XPC (ENSCJAG00000016952)	ENSCJAG00000087072	ENSCJAG00000072125	TMEM43 (ENSCJAG00000016924)	WNT7A (ENSCJAG00000040771)	FBLN2 (ENSCJAG00000016873)	HDAC11 (ENSCJAG00000016844)	NUP210 (ENSCJAG00000016795)	IQSEC1 (ENSCJAG00000016781)	ENSCJAG00000061647	CAND2 (ENSCJAG00000016770) #20	TMEM40 (ENSCJAG00000016751) #21	RAF1 (ENSCJAG00000016737) #22	ENSCJAG00000016733 #23	MKRN2OS (ENSCJAG00000040602) #24	TSEN2 (ENSCJAG00000080511)	ENSCJAG00000075859	ENSCJAG00000086839	PPARG (ENSCJAG00000016687)	TIMP4 (ENSCJAG00000038791)	SYN2 (ENSCJAG00000016647)	VGLL4 (ENSCJAG00000016643)	ENSCJAG00000058577	ATG7 (ENSCJAG00000016583)	HRH1 (ENSCJAG00000043961)	ENSCJAG00000084863	ENSCJAG00000070697	ENSCJAG00000072589
Mas night monkey	MODERN SPECIES	321	CCDC174 (ENSANAG00000036650) #8	GRIP2 (ENSANAG00000037475) #7	SLC6A6 (ENSANAG00000025733)	LSM3 (ENSANAG00000034627)	XPC (ENSANAG00000021069)	TMEM43 (ENSANAG00000036418)	CHCHD4 (ENSANAG00000034814)	WNT7A (ENSANAG00000033071)	FBLN2 (ENSANAG00000027135)	HDAC11 (ENSANAG00000035737)	NUP210 (ENSANAG00000036448)	IQSEC1 (ENSANAG00000028368)	ENSANAG00000020589 ##19	CAND2 (ENSANAG00000020366) #20	TMEM40 (ENSANAG00000036821) #21	RAF1 (ENSANAG00000031934) #22	MKRN2 (ENSANAG00000022646) #23	MKRN2OS (ENSANAG00000026143) #24	TSEN2 (ENSANAG00000026891)	PPARG (ENSANAG00000020115)	TIMP4 (ENSANAG00000032042)	SYN2 (ENSANAG00000021892)	TAMM41 (ENSANAG00000037740)	VGLL4 (ENSANAG00000038129)	ENSANAG00000012369	ENSANAG00000032758	HRH1 (ENSANAG00000031051)	ENSANAG00000019292	CIDEC (ENSANAG00000024285)	IL17RE (ENSANAG00000022892)	ENSANAG00000021183
Tarsier	MODERN SPECIES	5029																RAF1 (ENSTSYG00000007438) #22	MKRN2 (ENSTSYG00000007429) #23	ENSTSYG00000030920	MKRN2OS (ENSTSYG00000029616) #24	TSEN2 (ENSTSYG00000010816)	PPARG (ENSTSYG00000006950)	GABRR1 (ENSTSYG00000033942)	PM20D2 (ENSTSYG00000027051)
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Lemuriformes	ANCESTRAL SPECIES	76							ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000157312 #25
Mouse lemur	MODERN SPECIES	15	CPEB4 (ENSMICG00000029322)	C5orf47 (ENSMICG00000047468)	NSG2 (ENSMICG00000035993)	MSX2 (ENSMICG00000026941)	ENSMICG00000028823	PLXND1 (ENSMICG00000008079) #15	H1-8 (ENSMICG00000030377)	RHO (ENSMICG00000047910) #16	IFT122 (ENSMICG00000008033) #17	MBD4 (ENSMICG00000008022) #18	EFCAB12 (ENSMICG00000008010)	ENSMICG00000034607 #19	CAND2 (ENSMICG00000041434) #20	TMEM40 (ENSMICG00000003715) #21	ENSMICG00000033639	RAF1 (ENSMICG00000012172) #22	MKRN2 (ENSMICG00000012164) #23	MKRN2OS (ENSMICG00000038087) #24	TSEN2 (ENSMICG00000016672)	PPARG (ENSMICG00000016663)	TIMP4 (ENSMICG00000045817)	SYN2 (ENSMICG00000003565)	ENSMICG00000012731	TAMM41 (ENSMICG00000016586)	VGLL4 (ENSMICG00000016559)	ENSMICG00000035458	ATG7 (ENSMICG00000016547)	SLC6A1 (ENSMICG00000003055)	SLC6A11 (ENSMICG00000033698)	ATP2B2 (ENSMICG00000002406)	ACAD9 (ENSMICG00000007418) #25
Lemuriformes_a	ANCESTRAL SPECIES	162							ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000157312 #25
Coquerels sifaka	MODERN SPECIES	614						PLXND1 (ENSPCOG00000027312) #15	H1-8 (ENSPCOG00000024479)	RHO (ENSPCOG00000024236) #16	IFT122 (ENSPCOG00000023934) #17	ENSPCOG00000018583 #18	EFCAB12 (ENSPCOG00000020532)	ENSPCOG00000026378 #19	CAND2 (ENSPCOG00000020368) #20	TMEM40 (ENSPCOG00000027785) #21	ENSPCOG00000024646	RAF1 (ENSPCOG00000013436) #22	MKRN2 (ENSPCOG00000013481) #23	MKRN2OS (ENSPCOG00000027519) #24	TSEN2 (ENSPCOG00000019328)	PPARG (ENSPCOG00000017510)	SYN2 (ENSPCOG00000020181)	TIMP4 (ENSPCOG00000025232)	TAMM41 (ENSPCOG00000021554)	VGLL4 (ENSPCOG00000016845)	ATG7 (ENSPCOG00000021597)	SLC6A1 (ENSPCOG00000027376)	SLC6A11 (ENSPCOG00000012550)	ATP2B2 (ENSPCOG00000022973)	ENSPCOG00000027035	ACAD9 (ENSPCOG00000028509) #25	IQSEC1 (ENSPCOG00000022781)
Greater bamboo lemur	MODERN SPECIES	130						ENSPSMG00000002470 #15	H1-8 (ENSPSMG00000002466)	RHO (ENSPSMG00000002457) #16	IFT122 (ENSPSMG00000001543) #17	MBD4 (ENSPSMG00000001016) #18	EFCAB12 (ENSPSMG00000000969)	ENSPSMG00000000953 ##19	CAND2 (ENSPSMG00000000926) #20	ENSPSMG00000000888	TMEM40 (ENSPSMG00000000837) #21	RAF1 (ENSPSMG00000000725) #22	MKRN2 (ENSPSMG00000000636) #23	MKRN2OS (ENSPSMG00000000584) #24	TSEN2 (ENSPSMG00000000537)	PPARG (ENSPSMG00000000463)	TIMP4 (ENSPSMG00000000419)	SYN2 (ENSPSMG00000000398)	TAMM41 (ENSPSMG00000000346)	VGLL4 (ENSPSMG00000000320)	ATG7 (ENSPSMG00000000247)	HRH1 (ENSPSMG00000000102)	SLC6A1 (ENSPSMG00000025445)	SLC6A11 (ENSPSMG00000025382)
Bushbaby	MODERN SPECIES	216	NR2C2 (ENSOGAG00000014038) #11	MRPS25 (ENSOGAG00000014041) #12	RBSN (ENSOGAG00000014042) #13	TRH (ENSOGAG00000017199)	ENSOGAG00000031381	TMCC1 (ENSOGAG00000010283) #14	ENSOGAG00000032612	PLXND1 (ENSOGAG00000010266) #15	RHO (ENSOGAG00000010259) #16	IFT122 (ENSOGAG00000010245) #17	MBD4 (ENSOGAG00000010236) #18	ENSOGAG00000010234	RPL32 (ENSOGAG00000028498) ##19	CAND2 (ENSOGAG00000028928) #20	TMEM40 (ENSOGAG00000003261) #21	RAF1 (ENSOGAG00000003256) #22	MKRN2 (ENSOGAG00000003255) #23	MKRN2OS (ENSOGAG00000031425) #24	ENSOGAG00000002976	PPARG (ENSOGAG00000002971)	SYN2 (ENSOGAG00000016700)	TIMP4 (ENSOGAG00000016704)	ENSOGAG00000006595	ENSOGAG00000031076	TAMM41 (ENSOGAG00000030657)	VGLL4 (ENSOGAG00000016184)	ATG7 (ENSOGAG00000016175)	HRH1 (ENSOGAG00000016172)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156084 #22
Hedgehog	MODERN SPECIES	2892																RAF1 (ENSEEUG00000011360) #22
Common shrew	MODERN SPECIES	2149																RAF1 (ENSSARG00000007569) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT01010000229800	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00930000152979	ENSGT00940000175447	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT01010000229800	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT01010000229800	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Cetacea	ANCESTRAL SPECIES	7	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT01010000229800	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.`b	ENSGT00390000004064
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000158393 #11	ENSGT00640000091558.n #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00930000152979	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.`b	ENSGT00390000004064
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558.n #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.`b	ENSGT00390000004064
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558.n #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.`b	ENSGT00390000004064
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558.n #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B.`b	ENSGT00390000004064
Narwhal	MODERN SPECIES	310	FGD5 (ENSMMNG00015012622) #10	NR2C2 (ENSMMNG00015012595) #11	ENSMMNG00015012540 #12	RBSN (ENSMMNG00015012525) #13	TRH (ENSMMNG00015012517)	TMCC1 (ENSMMNG00015012483) #14	PLXND1 (ENSMMNG00015012370) #15	H1-8 (ENSMMNG00015012313)	RHO (ENSMMNG00015012293) #16	IFT122 (ENSMMNG00015012203) #17	MBD4 (ENSMMNG00015012156) #18	EFCAB12 (ENSMMNG00015012144)	RPL32 (ENSMMNG00015012118) ##19	CAND2 (ENSMMNG00015012039) #20	TMEM40 (ENSMMNG00015012000) #21	RAF1 (ENSMMNG00015011951) #22	MKRN2 (ENSMMNG00015011904) #23	MKRN2OS (ENSMMNG00015011881) #24	TSEN2 (ENSMMNG00015011810)	PPARG (ENSMMNG00015011771)	TIMP4 (ENSMMNG00015011737)	SYN2 (ENSMMNG00015011708)	TAMM41 (ENSMMNG00015011672)	VGLL4 (ENSMMNG00015011616)	ATG7 (ENSMMNG00015011505)	HRH1 (ENSMMNG00015011469)	SLC6A1 (ENSMMNG00015011419)	SLC6A11 (ENSMMNG00015011359)	ENSMMNG00015011333	ATP2B2 (ENSMMNG00015011282)	SEC13 (ENSMMNG00015011196)
Beluga whale	MODERN SPECIES	66	NR2C2 (ENSDLEG00000008987) #11	ENSDLEG00000008967 #12	ENSDLEG00000008956 #12	RBSN (ENSDLEG00000008914) #13	TRH (ENSDLEG00000008893)	TMCC1 (ENSDLEG00000008842) #14	PLXND1 (ENSDLEG00000008614) #15	H1-8 (ENSDLEG00000008521)	RHO (ENSDLEG00000008470) #16	IFT122 (ENSDLEG00000008304) #17	MBD4 (ENSDLEG00000008239) #18	ENSDLEG00000008201	RPL32 (ENSDLEG00000008175) ##19	CAND2 (ENSDLEG00000008059) #20	TMEM40 (ENSDLEG00000008007) #21	RAF1 (ENSDLEG00000007956) #22	MKRN2 (ENSDLEG00000021478) #23	ENSDLEG00000021477	ENSDLEG00000021458	TIMP4 (ENSDLEG00000021450)	SYN2 (ENSDLEG00000021448)	TAMM41 (ENSDLEG00000021438)	ATG7 (ENSDLEG00000021427)	HRH1 (ENSDLEG00000021424)	SLC6A1 (ENSDLEG00000021420)	SLC6A11 (ENSDLEG00000021059)	ATP2B2 (ENSDLEG00000015650)	SEC13 (ENSDLEG00000015045)	GHRL (ENSDLEG00000015002)	ENSDLEG00000014986	ENSDLEG00000014979
Vaquita	MODERN SPECIES	2	NR2C2 (ENSPSNG00000022710) #11	ENSPSNG00000022711 #12	RBSN (ENSPSNG00000022712) #13	TRH (ENSPSNG00000022713)	ENSPSNG00000022714 #14	ENSPSNG00000022717 #14	PLXND1 (ENSPSNG00000022718) #15	H1-8 (ENSPSNG00000022719)	RHO (ENSPSNG00000022720) #16	IFT122 (ENSPSNG00000022721) #17	MBD4 (ENSPSNG00000022722) #18	EFCAB12 (ENSPSNG00000022723)	RPL32 (ENSPSNG00000022724) ##19	CAND2 (ENSPSNG00000009832) #20	TMEM40 (ENSPSNG00000010002) #21	RAF1 (ENSPSNG00000010184) #22	MKRN2 (ENSPSNG00000010288) #23	MKRN2OS (ENSPSNG00000010409) #24	TSEN2 (ENSPSNG00000010460)	PPARG (ENSPSNG00000010554)	SYN2 (ENSPSNG00000010964)	TIMP4 (ENSPSNG00000011214)	TAMM41 (ENSPSNG00000011313)	VGLL4 (ENSPSNG00000011411)	ATG7 (ENSPSNG00000011678)	HRH1 (ENSPSNG00000012320)	SLC6A1 (ENSPSNG00000012418)	SLC6A11 (ENSPSNG00000013275)	ATP2B2 (ENSPSNG00000013827)	ENSPSNG00000015998	GHRL (ENSPSNG00000016272)
Sperm whale	MODERN SPECIES	9	NR2C2 (ENSPCTG00005005417) #11	MRPS25 (ENSPCTG00005005475) #12	RBSN (ENSPCTG00005005519) #13	TMCC1 (ENSPCTG00005005558) #14	ENSPCTG00005005601	TRH (ENSPCTG00005005621)	ENSPCTG00005005684 #15	ENSPCTG00005005647	H1-8 (ENSPCTG00005005747)	RHO (ENSPCTG00005005781) #16	IFT122 (ENSPCTG00005005825) #17	MBD4 (ENSPCTG00005005918) #18	EFCAB12 (ENSPCTG00005005960)	ENSPCTG00005006016 #19	ENSPCTG00005006042 #20	RAF1 (ENSPCTG00005006081) #22	MKRN2 (ENSPCTG00005006141) #23	MKRN2OS (ENSPCTG00005006199) #24	PPARG (ENSPCTG00005006236)	SYN2 (ENSPCTG00005006330)	TIMP4 (ENSPCTG00005006355)	TAMM41 (ENSPCTG00005006384)	VGLL4 (ENSPCTG00005006432)	ATG7 (ENSPCTG00005006565)	HRH1 (ENSPCTG00005006823)	SLC6A1 (ENSPCTG00005006885)	SLC6A11 (ENSPCTG00005007501)	SEC13 (ENSPCTG00005007576)	GHRL (ENSPCTG00005007648)	TATDN2 (ENSPCTG00005007678)	IRAK2 (ENSPCTG00005007701)
Blue whale	MODERN SPECIES	2	NR2C2 (ENSBMSG00010010995) #11	MRPS25 (ENSBMSG00010010976) #12	RBSN (ENSBMSG00010010963) #13	TRH (ENSBMSG00010010946)	TMCC1 (ENSBMSG00010010919) #14	PLXND1 (ENSBMSG00010010833) #15	ENSBMSG00010010803	RHO (ENSBMSG00010010727) #16	IFT122 (ENSBMSG00010010593) #17	ENSBMSG00010010542	ENSBMSG00010010533 #18	EFCAB12 (ENSBMSG00010010503)	RPL32 (ENSBMSG00010010483) ##19	CAND2 (ENSBMSG00010010467) #20	TMEM40 (ENSBMSG00010010438) #21	RAF1 (ENSBMSG00010010408) #22	MKRN2 (ENSBMSG00010010365) #23	MKRN2OS (ENSBMSG00010010343) #24	TSEN2 (ENSBMSG00010010317)	PPARG (ENSBMSG00010010135)	TIMP4 (ENSBMSG00010010106)	SYN2 (ENSBMSG00010010076)	TAMM41 (ENSBMSG00010010044)	ENSBMSG00010010031	ENSBMSG00010009994	ATG7 (ENSBMSG00010009931)	HRH1 (ENSBMSG00010009905)	ENSBMSG00010009900	SLC6A1 (ENSBMSG00010009806)	SLC6A11 (ENSBMSG00010009702)	ATP2B2 (ENSBMSG00010008618)
Pecora	ANCESTRAL SPECIES	17	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Percora_a	ANCESTRAL SPECIES	19	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252	ENSGT00940000153393.B
Bovidae	ANCESTRAL SPECIES	19	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616.k	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616.l	ENSGT00390000007159 #13	ENSGT00640000091558 #12	ENSGT00940000158393 #11	ENSGT00940000157922 #10	ENSGT00940000153655.B #9	ENSGT00440000033958 #8	ENSGT00940000155615 #7	ENSGT00940000154583
Caprinae	ANCESTRAL SPECIES	15	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616.k	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616.l	ENSGT00390000007159 #13	ENSGT00640000091558 #12	ENSGT00940000158393 #11	ENSGT00940000157922 #10	ENSGT00940000153655.B #9	ENSGT00440000033958 #8	ENSGT00940000155615 #7	ENSGT00940000154583
Goat	MODERN SPECIES	14	HRH1 (ENSCHIG00000012387)	ATG7 (ENSCHIG00000018813)	VGLL4 (ENSCHIG00000019976)	ENSCHIG00000002443	TRH (ENSCHIG00000025325)	ENSCHIG00000015861 #14	ENSCHIG00000016746 #14	PLXND1 (ENSCHIG00000008763) #15	H1-8 (ENSCHIG00000015286)	RHO (ENSCHIG00000019086) #16	IFT122 (ENSCHIG00000018009) #17	MBD4 (ENSCHIG00000009760) #18	EFCAB12 (ENSCHIG00000024180)	RPL32 (ENSCHIG00000011099) ##19	CAND2 (ENSCHIG00000017799) #20	RAF1 (ENSCHIG00000006954) #22	MKRN2 (ENSCHIG00000021098) #23	MKRN2OS (ENSCHIG00000013445) #24	TSEN2 (ENSCHIG00000013772)	PPARG (ENSCHIG00000015877)	SYN2 (ENSCHIG00000024912)	TIMP4 (ENSCHIG00000017995)	ENSCHIG00000027078	RBSN (ENSCHIG00000019361) #13	MRPS25 (ENSCHIG00000009931) #12	NR2C2 (ENSCHIG00000008676) #11	FGD5 (ENSCHIG00000023792) #10	C3orf20 (ENSCHIG00000009719) #9	CCDC174 (ENSCHIG00000008286) #8	GRIP2 (ENSCHIG00000016620) #7	SLC6A6 (ENSCHIG00000024785)
Rambouillet Sheep	MODERN SPECIES	10	ATG7 (ENSOARG00020025688)	VGLL4 (ENSOARG00020025701)	ENSOARG00020025707	TAMM41 (ENSOARG00020025710)	TRH (ENSOARG00020025716)	TMCC1 (ENSOARG00020025721) #14	PLXND1 (ENSOARG00020025735) #15	ENSOARG00020025760	RHO (ENSOARG00020025763) #16	IFT122 (ENSOARG00020025765) #17	MBD4 (ENSOARG00020025769) #18	EFCAB12 (ENSOARG00020025775)	RPL32 (ENSOARG00020025785) ##19	CAND2 (ENSOARG00020025794) #20	TMEM40 (ENSOARG00020025803) #21	RAF1 (ENSOARG00020025810) #22	MKRN2 (ENSOARG00020025818) #23	MKRN2OS (ENSOARG00020025824) #24	TSEN2 (ENSOARG00020025828)	PPARG (ENSOARG00020025834)	SYN2 (ENSOARG00020025846)	ENSOARG00020025856	RBSN (ENSOARG00020025862) #13	MRPS25 (ENSOARG00020025871) #12	NR2C2 (ENSOARG00020025878) #11	C3orf20 (ENSOARG00020025893) #9	CCDC174 (ENSOARG00020025904) #8	GRIP2 (ENSOARG00020025919) #7	SLC6A6 (ENSOARG00020025943)	ENSOARG00020025950	TMEM43 (ENSOARG00020025957)
Bovinae	ANCESTRAL SPECIES	16	ENSGT00390000003282.B	ENSGT00390000000616.k	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616.l	ENSGT00390000007159 #13	ENSGT00640000091558 #12	ENSGT00940000158393 #11	ENSGT00940000157922 #10	ENSGT00940000153655.B #9	ENSGT00440000033958 #8	ENSGT00940000155615 #7	ENSGT00940000154583
Bos	ANCESTRAL SPECIES	16	ENSGT00390000003282.B	ENSGT00390000000616.k	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616.l	ENSGT00390000007159 #13	ENSGT00640000091558 #12	ENSGT00940000158393 #11	ENSGT00940000157922 #10	ENSGT00940000153655.B #9	ENSGT00440000033958 #8	ENSGT00940000155615 #7	ENSGT00940000154583
Bos_a	ANCESTRAL SPECIES	9	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616.k	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT00930000152979	ENSGT00940000175447	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000007159 #13	ENSGT00640000091558 #12	ENSGT00940000158393 #11	ENSGT00940000157922 #10	ENSGT00940000153655.B #9	ENSGT00440000033958 #8	ENSGT00940000155615 #7	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194
Wild yak	MODERN SPECIES	1473			TRH (ENSBMUG00000009602)	ENSBMUG00000009609	TMCC1 (ENSBMUG00000009638) #14	ENSBMUG00000009719	ENSBMUG00000009729	RHO (ENSBMUG00000009767) #16	IFT122 (ENSBMUG00000010042) #17	MBD4 (ENSBMUG00000010711) #18	EFCAB12 (ENSBMUG00000010745)	RPL32 (ENSBMUG00000010768) ##19	CAND2 (ENSBMUG00000010855) #20	TMEM40 (ENSBMUG00000010953) #21	ENSBMUG00000010983	RAF1 (ENSBMUG00000011029) #22	MKRN2 (ENSBMUG00000011049) #23	MKRN2OS (ENSBMUG00000011070) #24	PPARG (ENSBMUG00000011177)	SYN2 (ENSBMUG00000011214)	ENSBMUG00000011252
Domestic yak	MODERN SPECIES	14	ENSBGRG00000024715	TAMM41 (ENSBGRG00000024630)	TRH (ENSBGRG00000024598)	ENSBGRG00000024583	TMCC1 (ENSBGRG00000024493) #14	ENSBGRG00000024462	ENSBGRG00000024437	ENSBGRG00000024409	RHO (ENSBGRG00000024373) #16	IFT122 (ENSBGRG00000023990) #17	MBD4 (ENSBGRG00000023851) #18	EFCAB12 (ENSBGRG00000023675)	RPL32 (ENSBGRG00000023548) ##19	CAND2 (ENSBGRG00000023333) #20	TMEM40 (ENSBGRG00000023210) #21	RAF1 (ENSBGRG00000022891) #22	MKRN2 (ENSBGRG00000022735) #23	MKRN2OS (ENSBGRG00000022696) #24	ENSBGRG00000022315	TIMP4 (ENSBGRG00000022226)	SYN2 (ENSBGRG00000021920)	RBSN (ENSBGRG00000021762) #13	MRPS25 (ENSBGRG00000021676) #12	NR2C2 (ENSBGRG00000021614) #11	FGD5 (ENSBGRG00000021386) #10	C3orf20 (ENSBGRG00000021321) #9	CCDC174 (ENSBGRG00000021048) #8	GRIP2 (ENSBGRG00000020144) #7	SLC6A6 (ENSBGRG00000019545)	ENSBGRG00000019432	XPC (ENSBGRG00000018846)
Bos_b	ANCESTRAL SPECIES	17	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616.k	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616.l	ENSGT00390000007159 #13	ENSGT00640000091558 #12	ENSGT00940000158393 #11	ENSGT00940000157922 #10	ENSGT00940000153655.B #9	ENSGT00440000033958 #8	ENSGT00940000155615 #7	ENSGT00940000154583
Hybrid Bos Indicus	MODERN SPECIES	14	HRH1 (ENSBIXG00005024745)	ATG7 (ENSBIXG00005024877)	ENSBIXG00005025048	TRH (ENSBIXG00005025098)	ENSBIXG00005025108	ENSBIXG00005025137	TMCC1 (ENSBIXG00005025216) #14	PLXND1 (ENSBIXG00005025560) #15	ENSBIXG00005025593	RHO (ENSBIXG00005025616) #16	IFT122 (ENSBIXG00005025735) #17	MBD4 (ENSBIXG00005025831) #18	RPL32 (ENSBIXG00005025898) ##19	CAND2 (ENSBIXG00005025955) #20	TMEM40 (ENSBIXG00005026020) #21	RAF1 (ENSBIXG00005004450) #22	MKRN2 (ENSBIXG00005026143) #23	MKRN2OS (ENSBIXG00005026155) #24	ENSBIXG00005026465	TIMP4 (ENSBIXG00005026516)	SYN2 (ENSBIXG00005026582)	RBSN (ENSBIXG00005026693) #13	MRPS25 (ENSBIXG00005026733) #12	NR2C2 (ENSBIXG00005026766) #11	FGD5 (ENSBIXG00005027347) #10	C3orf20 (ENSBIXG00005027421) #9	CCDC174 (ENSBIXG00005027454) #8	ENSBIXG00005027475	ENSBIXG00005027488	GRIP2 (ENSBIXG00005027668) #7	SLC6A6 (ENSBIXG00005027782)
Cow	MODERN SPECIES	14	SLC6A1 (ENSBTAG00000005857)	ATG7 (ENSBTAG00000035827)	VGLL4 (ENSBTAG00000018600)	TAMM41 (ENSBTAG00000003328)	TRH (ENSBTAG00000005306)	TMCC1 (ENSBTAG00000006614) #14	PLXND1 (ENSBTAG00000001814) #15	H1-8 (ENSBTAG00000001812)	RHO (ENSBTAG00000001310) #16	IFT122 (ENSBTAG00000019121) #17	MBD4 (ENSBTAG00000021645) #18	EFCAB12 (ENSBTAG00000021643)	RPL32 (ENSBTAG00000015283) ##19	CAND2 (ENSBTAG00000015273) #20	TMEM40 (ENSBTAG00000000161) #21	RAF1 (ENSBTAG00000045748) #22	MKRN2 (ENSBTAG00000004512) #23	MKRN2OS (ENSBTAG00000024991) #24	TSEN2 (ENSBTAG00000037980)	PPARG (ENSBTAG00000001333)	SYN2 (ENSBTAG00000020260)	TIMP4 (ENSBTAG00000020263)	ENSBTAG00000031115	RBSN (ENSBTAG00000013725) #13	MRPS25 (ENSBTAG00000013723) #12	NR2C2 (ENSBTAG00000013716) #11	FGD5 (ENSBTAG00000006789) #10	C22H3orf20 (ENSBTAG00000040133) #9	CCDC174 (ENSBTAG00000038298) #8	GRIP2 (ENSBTAG00000011896) #7	SLC6A6 (ENSBTAG00000011088)
American bison	MODERN SPECIES	3340	ATG7 (ENSBBBG00000012188)	VGLL4 (ENSBBBG00000012100)	TAMM41 (ENSBBBG00000012063)	TRH (ENSBBBG00000012040)	ENSBBBG00000012036	TMCC1 (ENSBBBG00000012034) #14	ENSBBBG00000012012	ENSBBBG00000012007	RHO (ENSBBBG00000012003) #16	IFT122 (ENSBBBG00000002240) #17	MBD4 (ENSBBBG00000011698) #18	EFCAB12 (ENSBBBG00000011681)	RPL32 (ENSBBBG00000002148) ##19	CAND2 (ENSBBBG00000002144) #20	TMEM40 (ENSBBBG00000011569) #21	RAF1 (ENSBBBG00000011493) #22	MKRN2 (ENSBBBG00000011440) #23	MKRN2OS (ENSBBBG00000006934) #24	TSEN2 (ENSBBBG00000002087)	PPARG (ENSBBBG00000011336)	SYN2 (ENSBBBG00000011280)	TIMP4 (ENSBBBG00000011264)	RBSN (ENSBBBG00000011250) #13	MRPS25 (ENSBBBG00000011234) #12	NR2C2 (ENSBBBG00000011226) #11	C3orf20 (ENSBBBG00000011153) #9	CCDC174 (ENSBBBG00000002003) #8	GRIP2 (ENSBBBG00000011088) #7	SLC6A6 (ENSBBBG00000010987)	LSM3 (ENSBBBG00000007967)	XPC (ENSBBBG00000001954)
Siberian musk deer	MODERN SPECIES	1221	NR2C2 (ENSMMSG00000024042) #11	MRPS25 (ENSMMSG00000024052) #12	RBSN (ENSMMSG00000024056) #13	TRH (ENSMMSG00000024061)	ENSMMSG00000024063	TMCC1 (ENSMMSG00000024064) #14	PLXND1 (ENSMMSG00000024073) #15	ENSMMSG00000024082	RHO (ENSMMSG00000024086) #16	IFT122 (ENSMMSG00000024092) #17	MBD4 (ENSMMSG00000024114) #18	EFCAB12 (ENSMMSG00000024116)	RPL32 (ENSMMSG00000024124) ##19	CAND2 (ENSMMSG00000024132) #20	TMEM40 (ENSMMSG00000024144) #21	RAF1 (ENSMMSG00000024157) #22	MKRN2 (ENSMMSG00000014895) #23	MKRN2OS (ENSMMSG00000014926) #24	TSEN2 (ENSMMSG00000014963)	PPARG (ENSMMSG00000015004)	SYN2 (ENSMMSG00000015141)	TIMP4 (ENSMMSG00000015209)	TAMM41 (ENSMMSG00000015235)	VGLL4 (ENSMMSG00000015264)	ATG7 (ENSMMSG00000015338)	HRH1 (ENSMMSG00000015454)	SLC6A1 (ENSMMSG00000015486)	SLC6A11 (ENSMMSG00000015601)	ATP2B2 (ENSMMSG00000015764)	SEC13 (ENSMMSG00000018353)	ENSMMSG00000018446
Yarkand deer	MODERN SPECIES	16	VGLL4 (ENSCHYG00000017989)	TAMM41 (ENSCHYG00000017796)	TRH (ENSCHYG00000017738)	TMCC1 (ENSCHYG00000017484) #14	ENSCHYG00000017294 #15	H1-8 (ENSCHYG00000017241)	RHO (ENSCHYG00000017188) #16	IFT122 (ENSCHYG00000015047) #17	MBD4 (ENSCHYG00000014755) #18	EFCAB12 (ENSCHYG00000014606)	ENSCHYG00000014488 ##19	ENSCHYG00000014472	CAND2 (ENSCHYG00000014141) #20	TMEM40 (ENSCHYG00000013848) #21	ENSCHYG00000013805	RAF1 (ENSCHYG00000025496) #22	MKRN2 (ENSCHYG00000025428) #23	MKRN2OS (ENSCHYG00000025406) #24	TSEN2 (ENSCHYG00000025333)	PPARG (ENSCHYG00000025198)	TIMP4 (ENSCHYG00000025170)	ENSCHYG00000025128	RBSN (ENSCHYG00000025089) #13	ENSCHYG00000025047 #12	NR2C2 (ENSCHYG00000024864) #11	FGD5 (ENSCHYG00000024639) #10	C3orf20 (ENSCHYG00000024531) #9	ENSCHYG00000024372 #8	GRIP2 (ENSCHYG00000024067) #7	SLC6A6 (ENSCHYG00000023942)	LSM3 (ENSCHYG00000023916)
Camelidae	ANCESTRAL SPECIES	7	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00930000152979	ENSGT00940000175447	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Arabian camel	MODERN SPECIES	8	MRPS25 (ENSCDRG00005003419) #12	RBSN (ENSCDRG00005003390) #13	TRH (ENSCDRG00005003364)	TMCC1 (ENSCDRG00005018594) #14	PLXND1 (ENSCDRG00005018551) #15	ENSCDRG00005018533 #15	ENSCDRG00005018504	ENSCDRG00005018477	RHO (ENSCDRG00005018442) #16	IFT122 (ENSCDRG00005018267) #17	MBD4 (ENSCDRG00005018206) #18	EFCAB12 (ENSCDRG00005018119)	ENSCDRG00005018038 ##19	CAND2 (ENSCDRG00005017872) #20	TMEM40 (ENSCDRG00005017673) #21	RAF1 (ENSCDRG00005017576) #22	MKRN2 (ENSCDRG00005017406) #23	MKRN2OS (ENSCDRG00005017382) #24	TSEN2 (ENSCDRG00005017293)	PPARG (ENSCDRG00005017141)	TIMP4 (ENSCDRG00005017087)	SYN2 (ENSCDRG00005017059)	TAMM41 (ENSCDRG00005016988)	VGLL4 (ENSCDRG00005016647)	ATG7 (ENSCDRG00005016438)	HRH1 (ENSCDRG00005016405)	SLC6A1 (ENSCDRG00005016134)	SLC6A11 (ENSCDRG00005015983)	ATP2B2 (ENSCDRG00005015469)	SEC13 (ENSCDRG00005015206)	GHRL (ENSCDRG00005015107)
Alpaca	MODERN SPECIES	1304															TMEM40 (ENSVPAG00000011071) #21	RAF1 (ENSVPAG00000011066) #22	MKRN2 (ENSVPAG00000011064) #23	ENSVPAG00000011061	PPARG (ENSVPAG00000011059)	TIMP4 (ENSVPAG00000011058)	ENSVPAG00000011052
Suina	ANCESTRAL SPECIES	1	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT01010000229800	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00910000147252
Chacoan peccary	MODERN SPECIES	950	MRPS25 (ENSCWAG00000018966) #12	RBSN (ENSCWAG00000018943) #13	TRH (ENSCWAG00000018918)	TMCC1 (ENSCWAG00000018870) #14	PLXND1 (ENSCWAG00000018660) #15	H1-8 (ENSCWAG00000018609)	RHO (ENSCWAG00000018568) #16	IFT122 (ENSCWAG00000018289) #17	ENSCWAG00000018255	ENSCWAG00000018236 #18	ENSCWAG00000018222 #18	EFCAB12 (ENSCWAG00000018153)	RPL32 (ENSCWAG00000018094) ##19	CAND2 (ENSCWAG00000018031) #20	TMEM40 (ENSCWAG00000017953) #21	RAF1 (ENSCWAG00000017888) #22	MKRN2 (ENSCWAG00000017797) #23	ENSCWAG00000017774	TSEN2 (ENSCWAG00000017441)	PPARG (ENSCWAG00000017057)	TIMP4 (ENSCWAG00000017007)	SYN2 (ENSCWAG00000016935)	TAMM41 (ENSCWAG00000016892)	ENSCWAG00000016872	VGLL4 (ENSCWAG00000016758)	ATG7 (ENSCWAG00000016602)	HRH1 (ENSCWAG00000016580)	SLC6A1 (ENSCWAG00000015592)	SLC6A11 (ENSCWAG00000015415)	ATP2B2 (ENSCWAG00000012003)	ENSCWAG00000011861
Pig	MODERN SPECIES	4	RBSN (ENSSSCG00000036643) #13	TRH (ENSSSCG00000055507)	ENSSSCG00000044894	ENSSSCG00000040441	TMCC1 (ENSSSCG00000011593) #14	PLXND1 (ENSSSCG00000011592) #15	H1-8 (ENSSSCG00000011591)	RHO (ENSSSCG00000011590) #16	IFT122 (ENSSSCG00000011589) #17	MBD4 (ENSSSCG00000033303) #18	EFCAB12 (ENSSSCG00000011587)	RPL32 (ENSSSCG00000035811) ##19	CAND2 (ENSSSCG00000011582) #20	TMEM40 (ENSSSCG00000011583) #21	ENSSSCG00000056163	RAF1 (ENSSSCG00000024453) #22	MKRN2 (ENSSSCG00000029877) #23	ENSSSCG00000045850	MKRN2OS (ENSSSCG00000011581) #24	TSEN2 (ENSSSCG00000011580)	PPARG (ENSSSCG00000011579)	TIMP4 (ENSSSCG00000033000)	SYN2 (ENSSSCG00000023225)	TAMM41 (ENSSSCG00000011578)	VGLL4 (ENSSSCG00000030581)	ATG7 (ENSSSCG00000011575)	HRH1 (ENSSSCG00000011576)	SLC6A1 (ENSSSCG00000011577)	SLC6A11 (ENSSSCG00000039850)	ATP2B2 (ENSSSCG00000023084)	SEC13 (ENSSSCG00000011572)
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Carnivora	ANCESTRAL SPECIES	6	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00940000153973.c.a.b.a.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Ferret	MODERN SPECIES	163	NR2C2 (ENSMPUG00000017249) #11	MRPS25 (ENSMPUG00000017248) #12	RBSN (ENSMPUG00000017247) #13	TRH (ENSMPUG00000017246)	TMCC1 (ENSMPUG00000017243) #14	ENSMPUG00000017241	PLXND1 (ENSMPUG00000017238) #15	ENSMPUG00000017237	RHO (ENSMPUG00000017225) #16	IFT122 (ENSMPUG00000017197) #17	MBD4 (ENSMPUG00000017195) #18	EFCAB12 (ENSMPUG00000017190)	ENSMPUG00000017189 #19	CAND2 (ENSMPUG00000017188) #20	TMEM40 (ENSMPUG00000017187) #21	RAF1 (ENSMPUG00000017185) #22	MKRN2 (ENSMPUG00000017184) #23	MKRN2OS (ENSMPUG00000017183) #24	TSEN2 (ENSMPUG00000017182)	PPARG (ENSMPUG00000017181)	TIMP4 (ENSMPUG00000017178)	SYN2 (ENSMPUG00000017176)	TAMM41 (ENSMPUG00000017175)	VGLL4 (ENSMPUG00000017174)	ATG7 (ENSMPUG00000017171)	HRH1 (ENSMPUG00000020115)	SLC6A1 (ENSMPUG00000017170)	SLC6A11 (ENSMPUG00000017168)	ENSMPUG00000017167	ATP2B2 (ENSMPUG00000017163)	SEC13 (ENSMPUG00000017161)
American mink	MODERN SPECIES	287	NR2C2 (ENSNVIG00000009821) #11	MRPS25 (ENSNVIG00000009805) #12	RBSN (ENSNVIG00000009795) #13	TRH (ENSNVIG00000009787)	TMCC1 (ENSNVIG00000009775) #14	PLXND1 (ENSNVIG00000009720) #15	H1-8 (ENSNVIG00000009706)	RHO (ENSNVIG00000009693) #16	IFT122 (ENSNVIG00000009217) #17	MBD4 (ENSNVIG00000009126) #18	EFCAB12 (ENSNVIG00000009088)	ENSNVIG00000009040 ##19	CAND2 (ENSNVIG00000008985) #20	TMEM40 (ENSNVIG00000008852) #21	ENSNVIG00000008812	RAF1 (ENSNVIG00000008700) #22	MKRN2 (ENSNVIG00000008629) #23	MKRN2OS (ENSNVIG00000008607) #24	TSEN2 (ENSNVIG00000008550)	PPARG (ENSNVIG00000008444)	TIMP4 (ENSNVIG00000008416)	ENSNVIG00000008402	SYN2 (ENSNVIG00000008362)
Ursidae	ANCESTRAL SPECIES	11	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b.d #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Ursus	ANCESTRAL SPECIES	43	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b.d #16	ENSGT00390000001016.b #17	ENSGT00390000012138.a.a.j.s.b	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.c.a ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
American black bear	DUPLICATION
American black bear	MODERN SPECIES	4165																ENSUAMG00000022973 #22	MKRN2 (ENSUAMG00000023641) #23	ENSUAMG00000023642
American black bear	MODERN SPECIES	4166																ENSUAMG00000023646 #22
Polar bear	MODERN SPECIES	210	FGD5 (ENSUMAG00000017065) #10	NR2C2 (ENSUMAG00000017295) #11	MRPS25 (ENSUMAG00000017301) #12	RBSN (ENSUMAG00000017308) #13	TRH (ENSUMAG00000017316)	TMCC1 (ENSUMAG00000017322) #14	PLXND1 (ENSUMAG00000017372) #15	RHO (ENSUMAG00000017511) #16	IFT122 (ENSUMAG00000017522) #17	MBD4 (ENSUMAG00000017542) #18	ENSUMAG00000017544	EFCAB12 (ENSUMAG00000017549)	RPL32 (ENSUMAG00000017557) ##19	CAND2 (ENSUMAG00000017566) #20	TMEM40 (ENSUMAG00000017596) #21	RAF1 (ENSUMAG00000017600) #22	MKRN2 (ENSUMAG00000017606) #23	MKRN2OS (ENSUMAG00000017608) #24	TSEN2 (ENSUMAG00000017610)	PPARG (ENSUMAG00000017617)	SYN2 (ENSUMAG00000017656)	TIMP4 (ENSUMAG00000017853)	TAMM41 (ENSUMAG00000017859)	VGLL4 (ENSUMAG00000017868)	ATG7 (ENSUMAG00000017892)	HRH1 (ENSUMAG00000017957)	SLC6A1 (ENSUMAG00000017999)	SLC6A11 (ENSUMAG00000018214)	ATP2B2 (ENSUMAG00000018280)	SEC13 (ENSUMAG00000018614)	GHRL (ENSUMAG00000018619)
Giant Panda	MODERN SPECIES	14	MRPS25 (ENSAMEG00000027927) #12	ENSAMEG00000004361 #13	TRH (ENSAMEG00000025033)	TMCC1 (ENSAMEG00000004384) #14	PLXND1 (ENSAMEG00000004387) #15	H1-8 (ENSAMEG00000004448)	RHO (ENSAMEG00000004453) #16	IFT122 (ENSAMEG00000004471) #17	ENSAMEG00000030948	MBD4 (ENSAMEG00000004562) #18	ENSAMEG00000004574	RPL32 (ENSAMEG00000004583) ##19	CAND2 (ENSAMEG00000004596) #20	TMEM40 (ENSAMEG00000004646) #21	ENSAMEG00000025362	RAF1 (ENSAMEG00000004650) #22	MKRN2 (ENSAMEG00000004720) #23	MKRN2OS (ENSAMEG00000004745) #24	TSEN2 (ENSAMEG00000004748)	PPARG (ENSAMEG00000004774)	TIMP4 (ENSAMEG00000004836)	SYN2 (ENSAMEG00000004794)	TAMM41 (ENSAMEG00000010999)	VGLL4 (ENSAMEG00000011011)	ATG7 (ENSAMEG00000013130)	HRH1 (ENSAMEG00000019211)	SLC6A1 (ENSAMEG00000028234)	SLC6A11 (ENSAMEG00000013958)	ATP2B2 (ENSAMEG00000015866)	SEC13 (ENSAMEG00000015994)	GHRL (ENSAMEG00000016009)
Canidae	ANCESTRAL SPECIES		ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.a.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00940000162517.e.b.b	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00950000183087.A.a.a.b.p.a.a	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.a.b ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00940000162517.e.b.b	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Dog	MODERN SPECIES	12	MRPS25 (ENSCAFG00845026361) #12	ENSCAFG00845026464 #13	TRH (ENSCAFG00845026628)	ENSCAFG00845026667	TMCC1 (ENSCAFG00845026698) #14	RPL26 (ENSCAFG00845026761)	PLXND1 (ENSCAFG00845026992) #15	H1-8 (ENSCAFG00845027541)	RHO (ENSCAFG00845027581) #16	IFT122 (ENSCAFG00845027707) #17	MBD4 (ENSCAFG00845028304) #18	ENSCAFG00845028379	RPL32 (ENSCAFG00845028446) ##19	CAND2 (ENSCAFG00845028524) #20	TMEM40 (ENSCAFG00845028589) #21	RAF1 (ENSCAFG00845028676) #22	ENSCAFG00845028720	MKRN2 (ENSCAFG00845028765) #23	ENSCAFG00845028837	MKRN2OS (ENSCAFG00845028857) #24	TSEN2 (ENSCAFG00845028923)	PPARG (ENSCAFG00845029007)	SYN2 (ENSCAFG00845029109)	TIMP4 (ENSCAFG00845029189)	TAMM41 (ENSCAFG00845005937)	ENSCAFG00845005976	VGLL4 (ENSCAFG00845006044)	ATG7 (ENSCAFG00845006288)	HRH1 (ENSCAFG00845006605)	SLC6A1 (ENSCAFG00845006668)	SLC6A11 (ENSCAFG00845006781)
Dingo	MODERN SPECIES	236	RBSN (ENSCAFG00020006347) #13	TRH (ENSCAFG00020006350)	ENSCAFG00020006352	ENSCAFG00020006358	ENSCAFG00020006362 #14	ENSCAFG00020006372 #14	PLXND1 (ENSCAFG00020006389) #15	H1-8 (ENSCAFG00020006486)	RHO (ENSCAFG00020006492) #16	IFT122 (ENSCAFG00020006537) #17	MBD4 (ENSCAFG00020007082) #18	EFCAB12 (ENSCAFG00020007096)	RPL32 (ENSCAFG00020007109) ##19	CAND2 (ENSCAFG00020007135) #20	TMEM40 (ENSCAFG00020007225) #21	RAF1 (ENSCAFG00020007230) #22	MKRN2 (ENSCAFG00020007243) #23	ENSCAFG00020007244	MKRN2OS (ENSCAFG00020007247) #24	TSEN2 (ENSCAFG00020007250)	PPARG (ENSCAFG00020007261)	SYN2 (ENSCAFG00020007281)	TIMP4 (ENSCAFG00020007541)	TAMM41 (ENSCAFG00020007562)	ENSCAFG00020007566	VGLL4 (ENSCAFG00020007573)	ATG7 (ENSCAFG00020007592)	HRH1 (ENSCAFG00020007622)	SLC6A1 (ENSCAFG00020007634)	SLC6A11 (ENSCAFG00020007842)	ATP2B2 (ENSCAFG00020007890)
Red fox	MODERN SPECIES	130	NR2C2 (ENSVVUG00000013819) #11	ENSVVUG00000013842	MRPS25 (ENSVVUG00000013846) #12	RBSN (ENSVVUG00000013853) #13	TRH (ENSVVUG00000013865)	TMCC1 (ENSVVUG00000013886) #14	PLXND1 (ENSVVUG00000013916) #15	H1-8 (ENSVVUG00000014145)	RHO (ENSVVUG00000014149) #16	IFT122 (ENSVVUG00000014184) #17	MBD4 (ENSVVUG00000014222) #18	EFCAB12 (ENSVVUG00000014226)	RPL32 (ENSVVUG00000014231) #19	CAND2 (ENSVVUG00000014272) #20	ENSVVUG00000015228	RAF1 (ENSVVUG00000015233) #22	MKRN2 (ENSVVUG00000015240) #23	ENSVVUG00000015242	ENSVVUG00000015244	ENSVVUG00000015247	ENSVVUG00000015251 #24	TSEN2 (ENSVVUG00000015253)	PPARG (ENSVVUG00000015266)	ENSVVUG00000015270	SYN2 (ENSVVUG00000015294)	TIMP4 (ENSVVUG00000015655)	ENSVVUG00000015666	TAMM41 (ENSVVUG00000015667)	ENSVVUG00000015670	VGLL4 (ENSVVUG00000015675)	ATG7 (ENSVVUG00000015693)
Felidae	ANCESTRAL SPECIES	17	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
lion	MODERN SPECIES	2	FGD5 (ENSPLOG00000002817) #10	NR2C2 (ENSPLOG00000002757) #11	MRPS25 (ENSPLOG00000002725) #12	RBSN (ENSPLOG00000002563) #13	TRH (ENSPLOG00000002548)	TMCC1 (ENSPLOG00000002518) #14	PLXND1 (ENSPLOG00000002460) #15	H1-8 (ENSPLOG00000002423)	RHO (ENSPLOG00000002405) #16	IFT122 (ENSPLOG00000002159) #17	MBD4 (ENSPLOG00000002021) #18	EFCAB12 (ENSPLOG00000001903)	RPL32 (ENSPLOG00000001870) ##19	CAND2 (ENSPLOG00000001847) #20	TMEM40 (ENSPLOG00000001779) #21	RAF1 (ENSPLOG00000001743) #22	MKRN2 (ENSPLOG00000001691) #23	MKRN2OS (ENSPLOG00000001659) #24	TSEN2 (ENSPLOG00000001594)	PPARG (ENSPLOG00000001496)	TIMP4 (ENSPLOG00000001454)	SYN2 (ENSPLOG00000001422)	TAMM41 (ENSPLOG00000001396)	VGLL4 (ENSPLOG00000001346)	ENSPLOG00000001305	ATG7 (ENSPLOG00000001203)	HRH1 (ENSPLOG00000001150)	SLC6A1 (ENSPLOG00000001048)	SLC6A11 (ENSPLOG00000000895)	ATP2B2 (ENSPLOG00000000482)	SEC13 (ENSPLOG00000000172)
leopard	MODERN SPECIES	154	NR2C2 (ENSPPRG00000013873) #11	MRPS25 (ENSPPRG00000013901) #12	RBSN (ENSPPRG00000013941) #13	TRH (ENSPPRG00000013952)	TMCC1 (ENSPPRG00000014113) #14	PLXND1 (ENSPPRG00000014283) #15	H1-8 (ENSPPRG00000014444)	RHO (ENSPPRG00000014471) #16	ENSPPRG00000014504	IFT122 (ENSPPRG00000015865) #17	MBD4 (ENSPPRG00000016480) #18	EFCAB12 (ENSPPRG00000016816)	RPL32 (ENSPPRG00000016964) ##19	CAND2 (ENSPPRG00000017246) #20	TMEM40 (ENSPPRG00000018566) #21	RAF1 (ENSPPRG00000021390) #22	MKRN2 (ENSPPRG00000021887) #23	MKRN2OS (ENSPPRG00000021987) #24
Tiger	MODERN SPECIES	57						ENSPTIG00000016501 #14	ENSPTIG00000016640	H1-8 (ENSPTIG00000016687)	RHO (ENSPTIG00000016846) #16	IFT122 (ENSPTIG00000017825) #17	ENSPTIG00000012068 #18	EFCAB12 (ENSPTIG00000012496)	RPL32 (ENSPTIG00000013290) ##19	CAND2 (ENSPTIG00000014551) #20	TMEM40 (ENSPTIG00000016867) #21	RAF1 (ENSPTIG00000019431) #22	MKRN2 (ENSPTIG00000020261) #23	MKRN2OS (ENSPTIG00000020689) #24	TSEN2 (ENSPTIG00000021018)	PPARG (ENSPTIG00000021339)	SYN2 (ENSPTIG00000005386)	TIMP4 (ENSPTIG00000009274)	TAMM41 (ENSPTIG00000009439)	VGLL4 (ENSPTIG00000011766)	ATG7 (ENSPTIG00000012782)	HRH1 (ENSPTIG00000005327)	SLC6A1 (ENSPTIG00000015454)	SLC6A11 (ENSPTIG00000016056)	ATP2B2 (ENSPTIG00000016845)	SEC13 (ENSPTIG00000019088)	GHRL (ENSPTIG00000020903)
Cat	MODERN SPECIES	1	NR2C2 (ENSFCAG00000003537) #11	MRPS25 (ENSFCAG00000027687) #12	RBSN (ENSFCAG00000025901) #13	TRH (ENSFCAG00000029423)	TMCC1 (ENSFCAG00000027586) #14	PLXND1 (ENSFCAG00000000095) #15	H1-8 (ENSFCAG00000000094)	RHO (ENSFCAG00000000092) #16	IFT122 (ENSFCAG00000000086) #17	MBD4 (ENSFCAG00000000083) #18	EFCAB12 (ENSFCAG00000000081)	RPL32 (ENSFCAG00000030450) ##19	CAND2 (ENSFCAG00000008340) #20	ENSFCAG00000052196	TMEM40 (ENSFCAG00000037003) #21	RAF1 (ENSFCAG00000026299) #22	MKRN2 (ENSFCAG00000007979) #23	ENSFCAG00000049119	MKRN2OS (ENSFCAG00000046813) #24	TSEN2 (ENSFCAG00000025500)	PPARG (ENSFCAG00000006231)	TIMP4 (ENSFCAG00000028966)	SYN2 (ENSFCAG00000006229)	TAMM41 (ENSFCAG00000030835)	VGLL4 (ENSFCAG00000003266)	ATG7 (ENSFCAG00000003263)	HRH1 (ENSFCAG00000034897)	SLC6A1 (ENSFCAG00000004345)	SLC6A11 (ENSFCAG00000006043)	ATP2B2 (ENSFCAG00000011247)	SEC13 (ENSFCAG00000011245)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Chiroptera	ANCESTRAL SPECIES	54	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Microbat	MODERN SPECIES	945	FGD5 (ENSMLUG00000010008) #10	NR2C2 (ENSMLUG00000010062) #11	ENSMLUG00000017504 #12	RBSN (ENSMLUG00000010088) #13	TRH (ENSMLUG00000007249)	TMCC1 (ENSMLUG00000016755) #14	PLXND1 (ENSMLUG00000014790) #15	ENSMLUG00000025226	RHO (ENSMLUG00000014786) #16	IFT122 (ENSMLUG00000014771) #17	MBD4 (ENSMLUG00000014766) #18	ENSMLUG00000014759	RPL32 (ENSMLUG00000022528) ##19	CAND2 (ENSMLUG00000006333) #20	TMEM40 (ENSMLUG00000002835) #21	RAF1 (ENSMLUG00000017645) #22	MKRN2 (ENSMLUG00000017643) #23	MKRN2OS (ENSMLUG00000024734) #24	TSEN2 (ENSMLUG00000017641)	PPARG (ENSMLUG00000017638)	SYN2 (ENSMLUG00000006253)	TIMP4 (ENSMLUG00000006263)	TAMM41 (ENSMLUG00000015063)	VGLL4 (ENSMLUG00000010597)	ATG7 (ENSMLUG00000010572)	HRH1 (ENSMLUG00000010552)	SLC6A1 (ENSMLUG00000002027)	ENSMLUG00000009590	ATP2B2 (ENSMLUG00000001467)	SEC13 (ENSMLUG00000004901)	GHRL (ENSMLUG00000012014)
Greater horseshoe bat	MODERN SPECIES	8	NR2C2 (ENSRFEG00010017049) #11	ENSRFEG00010017258	MRPS25 (ENSRFEG00010017280) #12	RBSN (ENSRFEG00010017337) #13	TRH (ENSRFEG00010017403)	ENSRFEG00010017442	TMCC1 (ENSRFEG00010017473) #14	PLXND1 (ENSRFEG00010017592) #15	RHO (ENSRFEG00010017659) #16	IFT122 (ENSRFEG00010017745) #17	MBD4 (ENSRFEG00010018007) #18	EFCAB12 (ENSRFEG00010018070)	RPL32 (ENSRFEG00010018162) ##19	CAND2 (ENSRFEG00010018212) #20	TMEM40 (ENSRFEG00010018278) #21	RAF1 (ENSRFEG00010018423) #22	MKRN2 (ENSRFEG00010018469) #23	MKRN2OS (ENSRFEG00010018565) #24	TSEN2 (ENSRFEG00010018592)	PPARG (ENSRFEG00010018692)	SYN2 (ENSRFEG00010018840)	TIMP4 (ENSRFEG00010018875)	TAMM41 (ENSRFEG00010018912)	VGLL4 (ENSRFEG00010019005)	ATG7 (ENSRFEG00010019096)	HRH1 (ENSRFEG00010019159)	SLC6A1 (ENSRFEG00010019187)	SLC6A11 (ENSRFEG00010019331)	ATP2B2 (ENSRFEG00010019414)	ENSRFEG00010010425	ENSRFEG00010010629
Megabat	MODERN SPECIES	1499														CAND2 (ENSPVAG00000005826) #20	TMEM40 (ENSPVAG00000005825) #21	RAF1 (ENSPVAG00000005823) #22	MKRN2 (ENSPVAG00000005822) #23	TSEN2 (ENSPVAG00000005820)
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES																	ENSGT00940000156084.`b #22
Horse	MODERN SPECIES		RPS24 (ENSECAG00000016939)	ZMIZ1 (ENSECAG00000021528)	ZCCHC24 (ENSECAG00000017763)	PPIF (ENSECAG00000008796)	ANXA11 (ENSECAG00000019671)	ENSECAG00000045443	TMEM254 (ENSECAG00000013627)	AGT (ENSECAG00000015711)	COG2 (ENSECAG00000010075)	ENSECAG00000050926	ENSECAG00000027790	PGBD5 (ENSECAG00000006175)	GALNT2 (ENSECAG00000008653)	ENSECAG00000035867	ENSECAG00000045954	ENSECAG00000033308 #22	URB2 (ENSECAG00000012338)	TAF5L (ENSECAG00000016369)	ABCB10 (ENSECAG00000017883)	NUP133 (ENSECAG00000020760)	ACTA1 (ENSECAG00000000207)	CCSAP (ENSECAG00000005178)	RAB4A (ENSECAG00000005207)	RHOU (ENSECAG00000007462)	ZNF22 (ENSECAG00000003034)	RASSF4 (ENSECAG00000007066)	DEPP1 (ENSECAG00000046594)	ENSECAG00000045917	TMEM72 (ENSECAG00000016463)	CXCL12 (ENSECAG00000019551)	ZNF32 (ENSECAG00000023676)
Equus	DUPLICATION
Equus	DUPLICATION
Equus	ANCESTRAL SPECIES																	ENSGT00940000156084.ab.a.a #22
Donkey	DUPLICATION
Donkey	MODERN SPECIES	11	ENSEASG00005022991	SAMD8 (ENSEASG00005022992)	VDAC2 (ENSEASG00005022993)	COMTD1 (ENSEASG00005022994)	ZNF503 (ENSEASG00005022995)	ENSEASG00005022998	ENSEASG00005028521	ENSEASG00005025433	ENSEASG00005012078	COG2 (ENSEASG00005012075)	ENSEASG00005012074	PGBD5 (ENSEASG00005012072)	ENSEASG00005012066	ENSEASG00005012068	ENSEASG00005034731 #22	ENSEASG00005012065 #22	ENSEASG00005012060	TAF5L (ENSEASG00005012053)	ABCB10 (ENSEASG00005011975)	NUP133 (ENSEASG00005010841)	ACTA1 (ENSEASG00005031337)	CCSAP (ENSEASG00005010775)	RAB4A (ENSEASG00005010764)	ENSEASG00005026208	ENSEASG00005025602	RASSF4 (ENSEASG00005006918)	DEPP1 (ENSEASG00005006924)	TMEM72 (ENSEASG00005033345)	CXCL12 (ENSEASG00005031864)	ZNF32 (ENSEASG00005030797)	ENSEASG00005028506
Donkey	MODERN SPECIES	11	DUSP13 (ENSEASG00005035904)	ENSEASG00005022991	SAMD8 (ENSEASG00005022992)	VDAC2 (ENSEASG00005022993)	COMTD1 (ENSEASG00005022994)	ZNF503 (ENSEASG00005022995)	ENSEASG00005022998	ENSEASG00005028521	ENSEASG00005025433	ENSEASG00005012078	COG2 (ENSEASG00005012075)	ENSEASG00005012074	PGBD5 (ENSEASG00005012072)	ENSEASG00005012066	ENSEASG00005012068	ENSEASG00005034731 #22	ENSEASG00005012065 #22	ENSEASG00005012060	TAF5L (ENSEASG00005012053)	ABCB10 (ENSEASG00005011975)	NUP133 (ENSEASG00005010841)	ACTA1 (ENSEASG00005031337)	CCSAP (ENSEASG00005010775)	RAB4A (ENSEASG00005010764)	ENSEASG00005026208	ENSEASG00005025602	RASSF4 (ENSEASG00005006918)	DEPP1 (ENSEASG00005006924)	TMEM72 (ENSEASG00005033345)	CXCL12 (ENSEASG00005031864)	ZNF32 (ENSEASG00005030797)
Equus	ANCESTRAL SPECIES	5	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00940000153973.d ##19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00950000186178	ENSGT00940000156084.ab.a.b #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Horse	MODERN SPECIES	7	FGD5 (ENSECAG00000016458) #10	NR2C2 (ENSECAG00000003791) #11	MRPS25 (ENSECAG00000020841) #12	RBSN (ENSECAG00000021486) #13	TRH (ENSECAG00000006178)	TMCC1 (ENSECAG00000006725) #14	PLXND1 (ENSECAG00000009159) #15	H1-8 (ENSECAG00000013614)	RHO (ENSECAG00000013709) #16	IFT122 (ENSECAG00000015360) #17	MBD4 (ENSECAG00000022106) #18	CAND2 (ENSECAG00000010515) #20	RPL32 (ENSECAG00000049946) ##19	TMEM40 (ENSECAG00000008940) #21	ENSECAG00000033555	RAF1 (ENSECAG00000011807) #22	MKRN2 (ENSECAG00000024404) #23	MKRN2OS (ENSECAG00000012416)	TSEN2 (ENSECAG00000012813)	ENSECAG00000039510	PPARG (ENSECAG00000016664)	SYN2 (ENSECAG00000049642)	TIMP4 (ENSECAG00000011609)	TAMM41 (ENSECAG00000013860)	VGLL4 (ENSECAG00000039947)	ATG7 (ENSECAG00000022756)	ENSECAG00000048096	ENSECAG00000057850	HRH1 (ENSECAG00000004544)	SLC6A1 (ENSECAG00000000699)	SLC6A11 (ENSECAG00000004220)
Donkey	MODERN SPECIES	13	ENSEASG00005015425	NR2C2 (ENSEASG00005015422) #11	ENSEASG00005015419 #12	ENSEASG00005015384 #13	ENSEASG00005015376	TMCC1 (ENSEASG00005015373) #14	PLXND1 (ENSEASG00005015351) #15	H1-8 (ENSEASG00005025925)	RHO (ENSEASG00005015347) #16	IFT122 (ENSEASG00005014840) #17	MBD4 (ENSEASG00005014800) #18	ENSEASG00005014792 ##19	CAND2 (ENSEASG00005014788) #20	ENSEASG00005025405	TMEM40 (ENSEASG00005033260) #21	ENSEASG00005014777 #22	MKRN2 (ENSEASG00005014776) #23	MKRN2OS (ENSEASG00005035083) #24	ENSEASG00005014772	TSEN2 (ENSEASG00005014763)	PPARG (ENSEASG00005014732)	TIMP4 (ENSEASG00005030754)	SYN2 (ENSEASG00005014311)	TAMM41 (ENSEASG00005014302)	VGLL4 (ENSEASG00005014301)	ENSEASG00005027051	ATG7 (ENSEASG00005014298)	HRH1 (ENSEASG00005025266)	SLC6A1 (ENSEASG00005014296)	SLC6A11 (ENSEASG00005014295)	ENSEASG00005034257
Equus	ANCESTRAL SPECIES																	ENSGT00940000156084.ab.b #22
Donkey	MODERN SPECIES	13	NKIRAS1 (ENSEASG00005026235)	ENSEASG00005027441	NR1D2 (ENSEASG00005005978)	THRB (ENSEASG00005005979)	RARB (ENSEASG00005005983)	TOP2B (ENSEASG00005005985)	NGLY1 (ENSEASG00005005991)	OXSM (ENSEASG00005005992)	LRRC3B (ENSEASG00005024092)	NEK10 (ENSEASG00005006003)	SLC4A7 (ENSEASG00005006058)	EOMES (ENSEASG00005006127)	CMC1 (ENSEASG00005030717)	AZI2 (ENSEASG00005006140)	ENSEASG00005006144	ENSEASG00005033576 #22	TGFBR2 (ENSEASG00005006161)	GADL1 (ENSEASG00005006169)	ENSEASG00005033041	STT3B (ENSEASG00005006174)	OSBPL10 (ENSEASG00005006177)	GPD1L (ENSEASG00005006178)	CMTM8 (ENSEASG00005006179)	CMTM7 (ENSEASG00005034930)	CMTM6 (ENSEASG00005034157)	DYNC1LI1 (ENSEASG00005006183)	CNOT10 (ENSEASG00005006189)	TRIM71 (ENSEASG00005006192)	CCR4 (ENSEASG00005031493)	GLB1 (ENSEASG00005006196)	TMPPE (ENSEASG00005031717)
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.b.b ##19	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064
Xenarthra	ANCESTRAL SPECIES	662															ENSGT00390000017740.a.b #20	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062
Sloth	MODERN SPECIES	2491																RAF1 (ENSCHOG00000001052) #22
Armadillo	MODERN SPECIES	1334															CAND2 (ENSDNOG00000040049) #20	RAF1 (ENSDNOG00000009252) #22	ENSDNOG00000017476 #23	MKRN2OS (ENSDNOG00000042709) #24	TSEN2 (ENSDNOG00000038504)	PPARG (ENSDNOG00000018641)	TIMP4 (ENSDNOG00000012868)	SYN2 (ENSDNOG00000012852)
Afrotheria	ANCESTRAL SPECIES	32	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000013266	ENSGT00940000158273	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064	ENSGT00940000155616	ENSGT00940000159835	ENSGT00390000014353
Afrotheria_a	ANCESTRAL SPECIES	32	ENSGT00940000157922 #10	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a #18	ENSGT00390000014874	ENSGT00940000153973.c.a.a #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000156062	ENSGT00940000159798	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B	ENSGT00390000004064	ENSGT00940000155616
Elephant	MODERN SPECIES	49	C3orf20 (ENSLAFG00000015670) #9	FGD5 (ENSLAFG00000010491) #10	NR2C2 (ENSLAFG00000010224) #11	MRPS25 (ENSLAFG00000022178) #12	RBSN (ENSLAFG00000004227) #13	TRH (ENSLAFG00000015165)	TMCC1 (ENSLAFG00000013730) #14	PLXND1 (ENSLAFG00000003012) #15	RHO (ENSLAFG00000001359) #16	IFT122 (ENSLAFG00000010612) #17	MBD4 (ENSLAFG00000010609) #18	EFCAB12 (ENSLAFG00000010605)	ENSLAFG00000032737 #19	CAND2 (ENSLAFG00000017706) #20	TMEM40 (ENSLAFG00000010230) #21	RAF1 (ENSLAFG00000011608) #22	MKRN2 (ENSLAFG00000011601) #23	TSEN2 (ENSLAFG00000009300)	PPARG (ENSLAFG00000030870)	SYN2 (ENSLAFG00000004657)	TIMP4 (ENSLAFG00000004660)	TAMM41 (ENSLAFG00000011239)	VGLL4 (ENSLAFG00000017133)	ATG7 (ENSLAFG00000017130)	HRH1 (ENSLAFG00000017128)	SLC6A1 (ENSLAFG00000022374)	SLC6A11 (ENSLAFG00000016494)	ATP2B2 (ENSLAFG00000014604)	SEC13 (ENSLAFG00000014598)	GHRL (ENSLAFG00000014068)	TATDN2 (ENSLAFG00000028812)
Hyrax	MODERN SPECIES	10043																RAF1 (ENSPCAG00000016080) #22	MKRN2 (ENSPCAG00000016175) #23
Tenrec	MODERN SPECIES	7278																RAF1 (ENSETEG00000003974) #22	MKRN2 (ENSETEG00000003970) #23
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a.b #18	ENSGT00530000063687.a.a #18	ENSGT00390000014874	ENSGT00940000153973 #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT00940000160900	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a.b #18	ENSGT00530000063687.a.a #18	ENSGT00390000014874	ENSGT00940000153973 #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00510000050664	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a.b #18	ENSGT00530000063687.a.a #18	ENSGT00390000014874	ENSGT00940000153973 #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00510000050664	ENSGT00940000158393 #11	ENSGT00640000091558 #12	ENSGT00390000007159 #13	ENSGT00390000016951	ENSGT00940000155189 #14	ENSGT01020000230394.e.b.a #15	ENSGT01030000234549.a.a.a.a.a.b.b #16	ENSGT00390000001016.b #17	ENSGT00530000063687.a.b #18	ENSGT00530000063687.a.a #18	ENSGT00390000014874	ENSGT00940000153973 #19	ENSGT00390000017740.a.b #20	ENSGT00390000017530 #21	ENSGT00940000156084 #22	ENSGT00950000183077.a.b #23	ENSGT00390000003839 #24	ENSGT00390000013266	ENSGT00940000158273	ENSGT00940000159798	ENSGT00940000156062	ENSGT00390000000616	ENSGT00390000003282.B	ENSGT00390000017509	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00940000160690	ENSGT00940000156027	ENSGT00940000157569	ENSGT00940000161461	ENSGT00940000153393.B
Common wonbat	MODERN SPECIES	1012	CCDC174 (ENSVURG00010014898) #8	FGD5 (ENSVURG00010014863) #10	ENSVURG00010014858	NR2C2 (ENSVURG00010014575) #11	MRPS25 (ENSVURG00010014548) #12	RBSN (ENSVURG00010014533) #13	TMCC1 (ENSVURG00010014518) #14	PLXND1 (ENSVURG00010014456) #15	RHO (ENSVURG00010014434) #16	IFT122 (ENSVURG00010014263) #17	ENSVURG00010014225 #18	ENSVURG00010014212	ENSVURG00010014192 #19	CAND2 (ENSVURG00010013279) #20	TMEM40 (ENSVURG00010013215) #21	RAF1 (ENSVURG00010013196) #22	MKRN2 (ENSVURG00010013169) #23	MKRN2OS (ENSVURG00010013158) #24	TSEN2 (ENSVURG00010013138)	PPARG (ENSVURG00010013093)	ENSVURG00010013080	TIMP4 (ENSVURG00010013076)	ENSVURG00010013071	TAMM41 (ENSVURG00010013046)	VGLL4 (ENSVURG00010013026)	ATG7 (ENSVURG00010012989)	HRH1 (ENSVURG00010012968)	SLC6A1 (ENSVURG00010011767)	ENSVURG00010011722	SLC6A11 (ENSVURG00010011698)	ENSVURG00010011601
koala	MODERN SPECIES	10	FGD5 (ENSPCIG00000023533) #10	NR2C2 (ENSPCIG00000023531) #11	ENSPCIG00000023530 #12	RBSN (ENSPCIG00000023528) #13	ENSPCIG00000023527	TMCC1 (ENSPCIG00000002496) #14	PLXND1 (ENSPCIG00000002459) #15	RHO (ENSPCIG00000002359) #16	IFT122 (ENSPCIG00000002304) #17	ENSPCIG00000035263 #18	ENSPCIG00000002276 #18	ENSPCIG00000002263	RPL32 (ENSPCIG00000036095) #19	CAND2 (ENSPCIG00000002229) #20	TMEM40 (ENSPCIG00000002215) #21	RAF1 (ENSPCIG00000009694) #22	MKRN2 (ENSPCIG00000031653) #23	MKRN2OS (ENSPCIG00000002201) #24	TSEN2 (ENSPCIG00000002191)	PPARG (ENSPCIG00000002060)	TIMP4 (ENSPCIG00000002040)	SYN2 (ENSPCIG00000002007)	TAMM41 (ENSPCIG00000036857)	VGLL4 (ENSPCIG00000011097)	ATG7 (ENSPCIG00000011062)	ENSPCIG00000011056	HRH1 (ENSPCIG00000011053)	SLC6A1 (ENSPCIG00000011049)	SLC6A11 (ENSPCIG00000011028)	ATP2B2 (ENSPCIG00000024350)	ENSPCIG00000021918
Wallaby	MODERN SPECIES	9824																RAF1 (ENSMEUG00000004360) #22	MKRN2 (ENSMEUG00000004347) #23
Tasmanian devil	MODERN SPECIES		FGD5 (ENSSHAG00000016383) #10	ENSSHAG00000024996	NR2C2 (ENSSHAG00000016078) #11	ENSSHAG00000015988 #13	ENSSHAG00000026312	TMCC1 (ENSSHAG00000014733) #14	PLXND1 (ENSSHAG00000013651) #15	ENSSHAG00000029482	RHO (ENSSHAG00000013534) #16	IFT122 (ENSSHAG00000013078) #17	MBD4 (ENSSHAG00000012953) #18	ENSSHAG00000012822	ENSSHAG00000012782 #19	CAND2 (ENSSHAG00000012567) #20	TMEM40 (ENSSHAG00000012194) #21	RAF1 (ENSSHAG00000011099) #22	ENSSHAG00000011021 #23	MKRN2OS (ENSSHAG00000010787) #24	TSEN2 (ENSSHAG00000010530)	PPARG (ENSSHAG00000008610)	TIMP4 (ENSSHAG00000006738)	SYN2 (ENSSHAG00000006422)	TAMM41 (ENSSHAG00000018802)	ENSSHAG00000018702	ENSSHAG00000027506	ENSSHAG00000031478	ATG7 (ENSSHAG00000022602)	HRH1 (ENSSHAG00000028397)	ENSSHAG00000018140	SLC6A11 (ENSSHAG00000026964)	ENSSHAG00000017272
Opossum	MODERN SPECIES	5	RBSN (ENSMODG00000007011) #13	ENSMODG00000028708	ENSMODG00000042057	ENSMODG00000044035	TMCC1 (ENSMODG00000006987) #14	PLXND1 (ENSMODG00000006963) #15	ENSMODG00000028422	RHO (ENSMODG00000006488) #16	IFT122 (ENSMODG00000006462) #17	ENSMODG00000042737 #18	ENSMODG00000006399 #18	ENSMODG00000006335	RPL32 (ENSMODG00000037211) #19	CAND2 (ENSMODG00000006377) #20	ENSMODG00000025518 #21	RAF1 (ENSMODG00000006307) #22	MKRN2 (ENSMODG00000006280) #23	MKRN2OS (ENSMODG00000006265) #24	TSEN2 (ENSMODG00000006249)	PPARG (ENSMODG00000006233)	TIMP4 (ENSMODG00000006199)	SYN2 (ENSMODG00000006159)	ENSMODG00000006153	VGLL4 (ENSMODG00000006145)	ATG7 (ENSMODG00000006136)	ENSMODG00000006043	HRH1 (ENSMODG00000006000)	SLC6A1 (ENSMODG00000005984)	SLC6A11 (ENSMODG00000005602)	ATP2B2 (ENSMODG00000005537)	SEC13 (ENSMODG00000005505)