Laurasiatheria_b ANCESTRAL SPECIES 2 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Carnivora ANCESTRAL SPECIES 6 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00940000153973.c.a.b.a.b #19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 Caniformia ANCESTRAL SPECIES 4 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 Canidae ANCESTRAL SPECIES ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.a.b #19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00940000162517.e.b.b #31 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 Canis_lupus ANCESTRAL SPECIES 1 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00950000183087.A.a.a.b.p.a.a #9 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.a.b #19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00940000162517.e.b.b #31 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Dingo MODERN SPECIES 236 RBSN (ENSCAFG00020006347) #7 TRH (ENSCAFG00020006350) #8 ENSCAFG00020006352 #9 ENSCAFG00020006358 #10 ENSCAFG00020006362 #11 ENSCAFG00020006372 #12 PLXND1 (ENSCAFG00020006389) #13 H1-8 (ENSCAFG00020006486) #14 RHO (ENSCAFG00020006492) #15 IFT122 (ENSCAFG00020006537) #16 MBD4 (ENSCAFG00020007082) #17 EFCAB12 (ENSCAFG00020007096) #18 RPL32 (ENSCAFG00020007109) #19 CAND2 (ENSCAFG00020007135) #20 TMEM40 (ENSCAFG00020007225) #21 RAF1 (ENSCAFG00020007230) #22 MKRN2 (ENSCAFG00020007243) #23 ENSCAFG00020007244 #24 MKRN2OS (ENSCAFG00020007247) #25 TSEN2 (ENSCAFG00020007250) #26 PPARG (ENSCAFG00020007261) #27 SYN2 (ENSCAFG00020007281) #28 TIMP4 (ENSCAFG00020007541) #29 TAMM41 (ENSCAFG00020007562) #30 ENSCAFG00020007566 #31 VGLL4 (ENSCAFG00020007573) #32 ATG7 (ENSCAFG00020007592) #33 HRH1 (ENSCAFG00020007622) #34 SLC6A1 (ENSCAFG00020007634) #35 SLC6A11 (ENSCAFG00020007842) #36 ATP2B2 (ENSCAFG00020007890) #37 Dog MODERN SPECIES 12 MRPS25 (ENSCAFG00845026361) ENSCAFG00845026464 #7 TRH (ENSCAFG00845026628) #8 ENSCAFG00845026667 #9 TMCC1 (ENSCAFG00845026698) #12 RPL26 (ENSCAFG00845026761) #10 PLXND1 (ENSCAFG00845026992) #13 H1-8 (ENSCAFG00845027541) #14 RHO (ENSCAFG00845027581) #15 IFT122 (ENSCAFG00845027707) #16 MBD4 (ENSCAFG00845028304) #17 ENSCAFG00845028379 #18 RPL32 (ENSCAFG00845028446) #19 CAND2 (ENSCAFG00845028524) #20 TMEM40 (ENSCAFG00845028589) #21 RAF1 (ENSCAFG00845028676) #22 ENSCAFG00845028720 MKRN2 (ENSCAFG00845028765) #23 ENSCAFG00845028837 MKRN2OS (ENSCAFG00845028857) #25 TSEN2 (ENSCAFG00845028923) #26 PPARG (ENSCAFG00845029007) #27 SYN2 (ENSCAFG00845029109) #28 TIMP4 (ENSCAFG00845029189) #29 TAMM41 (ENSCAFG00845005937) #30 ENSCAFG00845005976 VGLL4 (ENSCAFG00845006044) #32 ATG7 (ENSCAFG00845006288) #33 HRH1 (ENSCAFG00845006605) #34 SLC6A1 (ENSCAFG00845006668) #35 SLC6A11 (ENSCAFG00845006781) #36 Red fox MODERN SPECIES 130 NR2C2 (ENSVVUG00000013819) ENSVVUG00000013842 MRPS25 (ENSVVUG00000013846) RBSN (ENSVVUG00000013853) #7 TRH (ENSVVUG00000013865) #8 TMCC1 (ENSVVUG00000013886) #12 PLXND1 (ENSVVUG00000013916) #13 H1-8 (ENSVVUG00000014145) #14 RHO (ENSVVUG00000014149) #15 IFT122 (ENSVVUG00000014184) #16 MBD4 (ENSVVUG00000014222) #17 EFCAB12 (ENSVVUG00000014226) #18 RPL32 (ENSVVUG00000014231) ##19 CAND2 (ENSVVUG00000014272) #20 ENSVVUG00000015228 RAF1 (ENSVVUG00000015233) #22 MKRN2 (ENSVVUG00000015240) #23 ENSVVUG00000015242 ENSVVUG00000015244 ENSVVUG00000015247 ENSVVUG00000015251 #25 TSEN2 (ENSVVUG00000015253) #26 PPARG (ENSVVUG00000015266) #27 ENSVVUG00000015270 SYN2 (ENSVVUG00000015294) #28 TIMP4 (ENSVVUG00000015655) #29 ENSVVUG00000015666 TAMM41 (ENSVVUG00000015667) #30 ENSVVUG00000015670 #31 VGLL4 (ENSVVUG00000015675) #32 ATG7 (ENSVVUG00000015693) #33 Caniformia_b ANCESTRAL SPECIES 16 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Mustelinae ANCESTRAL SPECIES 18 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Ferret MODERN SPECIES 163 NR2C2 (ENSMPUG00000017249) MRPS25 (ENSMPUG00000017248) RBSN (ENSMPUG00000017247) #7 TRH (ENSMPUG00000017246) #8 TMCC1 (ENSMPUG00000017243) #12 ENSMPUG00000017241 PLXND1 (ENSMPUG00000017238) #13 ENSMPUG00000017237 RHO (ENSMPUG00000017225) #15 IFT122 (ENSMPUG00000017197) #16 MBD4 (ENSMPUG00000017195) #17 EFCAB12 (ENSMPUG00000017190) #18 ENSMPUG00000017189 ##19 CAND2 (ENSMPUG00000017188) #20 TMEM40 (ENSMPUG00000017187) #21 RAF1 (ENSMPUG00000017185) #22 MKRN2 (ENSMPUG00000017184) #23 MKRN2OS (ENSMPUG00000017183) #25 TSEN2 (ENSMPUG00000017182) #26 PPARG (ENSMPUG00000017181) #27 TIMP4 (ENSMPUG00000017178) #29 SYN2 (ENSMPUG00000017176) #28 TAMM41 (ENSMPUG00000017175) #30 VGLL4 (ENSMPUG00000017174) #32 ATG7 (ENSMPUG00000017171) #33 HRH1 (ENSMPUG00000020115) #34 SLC6A1 (ENSMPUG00000017170) #35 SLC6A11 (ENSMPUG00000017168) #36 ENSMPUG00000017167 ATP2B2 (ENSMPUG00000017163) #37 SEC13 (ENSMPUG00000017161) American mink MODERN SPECIES 287 NR2C2 (ENSNVIG00000009821) MRPS25 (ENSNVIG00000009805) RBSN (ENSNVIG00000009795) #7 TRH (ENSNVIG00000009787) #8 TMCC1 (ENSNVIG00000009775) #12 PLXND1 (ENSNVIG00000009720) #13 H1-8 (ENSNVIG00000009706) #14 RHO (ENSNVIG00000009693) #15 IFT122 (ENSNVIG00000009217) #16 MBD4 (ENSNVIG00000009126) #17 EFCAB12 (ENSNVIG00000009088) #18 ENSNVIG00000009040 #19 CAND2 (ENSNVIG00000008985) #20 TMEM40 (ENSNVIG00000008852) #21 ENSNVIG00000008812 RAF1 (ENSNVIG00000008700) #22 MKRN2 (ENSNVIG00000008629) #23 MKRN2OS (ENSNVIG00000008607) #25 TSEN2 (ENSNVIG00000008550) #26 PPARG (ENSNVIG00000008444) #27 TIMP4 (ENSNVIG00000008416) #29 ENSNVIG00000008402 SYN2 (ENSNVIG00000008362) #28 Ursidae ANCESTRAL SPECIES 11 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b.d #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Ursus ANCESTRAL SPECIES 43 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b.d #15 ENSGT00390000001016.b #16 ENSGT00390000012138.a.a.j.s.b ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.c.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B American black bear DUPLICATION American black bear MODERN SPECIES 4165 ENSUAMG00000022973 #22 MKRN2 (ENSUAMG00000023641) #23 ENSUAMG00000023642 American black bear MODERN SPECIES 4166 ENSUAMG00000023646 #22 Polar bear MODERN SPECIES 210 FGD5 (ENSUMAG00000017065) NR2C2 (ENSUMAG00000017295) MRPS25 (ENSUMAG00000017301) RBSN (ENSUMAG00000017308) #7 TRH (ENSUMAG00000017316) #8 TMCC1 (ENSUMAG00000017322) #12 PLXND1 (ENSUMAG00000017372) #13 RHO (ENSUMAG00000017511) #15 IFT122 (ENSUMAG00000017522) #16 MBD4 (ENSUMAG00000017542) #17 ENSUMAG00000017544 EFCAB12 (ENSUMAG00000017549) #18 RPL32 (ENSUMAG00000017557) ##19 CAND2 (ENSUMAG00000017566) #20 TMEM40 (ENSUMAG00000017596) #21 RAF1 (ENSUMAG00000017600) #22 MKRN2 (ENSUMAG00000017606) #23 MKRN2OS (ENSUMAG00000017608) #25 TSEN2 (ENSUMAG00000017610) #26 PPARG (ENSUMAG00000017617) #27 SYN2 (ENSUMAG00000017656) #28 TIMP4 (ENSUMAG00000017853) #29 TAMM41 (ENSUMAG00000017859) #30 VGLL4 (ENSUMAG00000017868) #32 ATG7 (ENSUMAG00000017892) #33 HRH1 (ENSUMAG00000017957) #34 SLC6A1 (ENSUMAG00000017999) #35 SLC6A11 (ENSUMAG00000018214) #36 ATP2B2 (ENSUMAG00000018280) #37 SEC13 (ENSUMAG00000018614) GHRL (ENSUMAG00000018619) Giant Panda MODERN SPECIES 14 MRPS25 (ENSAMEG00000027927) ENSAMEG00000004361 #7 TRH (ENSAMEG00000025033) #8 TMCC1 (ENSAMEG00000004384) #12 PLXND1 (ENSAMEG00000004387) #13 H1-8 (ENSAMEG00000004448) #14 RHO (ENSAMEG00000004453) #15 IFT122 (ENSAMEG00000004471) #16 ENSAMEG00000030948 MBD4 (ENSAMEG00000004562) #17 ENSAMEG00000004574 #18 RPL32 (ENSAMEG00000004583) ##19 CAND2 (ENSAMEG00000004596) #20 TMEM40 (ENSAMEG00000004646) #21 ENSAMEG00000025362 RAF1 (ENSAMEG00000004650) #22 MKRN2 (ENSAMEG00000004720) #23 MKRN2OS (ENSAMEG00000004745) #25 TSEN2 (ENSAMEG00000004748) #26 PPARG (ENSAMEG00000004774) #27 TIMP4 (ENSAMEG00000004836) #29 SYN2 (ENSAMEG00000004794) #28 TAMM41 (ENSAMEG00000010999) #30 VGLL4 (ENSAMEG00000011011) #32 ATG7 (ENSAMEG00000013130) #33 HRH1 (ENSAMEG00000019211) #34 SLC6A1 (ENSAMEG00000028234) #35 SLC6A11 (ENSAMEG00000013958) #36 ATP2B2 (ENSAMEG00000015866) #37 SEC13 (ENSAMEG00000015994) GHRL (ENSAMEG00000016009) Felidae ANCESTRAL SPECIES 17 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Panthera ANCESTRAL SPECIES 1 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Panthera_a ANCESTRAL SPECIES ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B lion MODERN SPECIES 2 FGD5 (ENSPLOG00000002817) NR2C2 (ENSPLOG00000002757) MRPS25 (ENSPLOG00000002725) RBSN (ENSPLOG00000002563) #7 TRH (ENSPLOG00000002548) #8 TMCC1 (ENSPLOG00000002518) #12 PLXND1 (ENSPLOG00000002460) #13 H1-8 (ENSPLOG00000002423) #14 RHO (ENSPLOG00000002405) #15 IFT122 (ENSPLOG00000002159) #16 MBD4 (ENSPLOG00000002021) #17 EFCAB12 (ENSPLOG00000001903) #18 RPL32 (ENSPLOG00000001870) ##19 CAND2 (ENSPLOG00000001847) #20 TMEM40 (ENSPLOG00000001779) #21 RAF1 (ENSPLOG00000001743) #22 MKRN2 (ENSPLOG00000001691) #23 MKRN2OS (ENSPLOG00000001659) #25 TSEN2 (ENSPLOG00000001594) #26 PPARG (ENSPLOG00000001496) #27 TIMP4 (ENSPLOG00000001454) #29 SYN2 (ENSPLOG00000001422) #28 TAMM41 (ENSPLOG00000001396) #30 VGLL4 (ENSPLOG00000001346) #32 ENSPLOG00000001305 ATG7 (ENSPLOG00000001203) #33 HRH1 (ENSPLOG00000001150) #34 SLC6A1 (ENSPLOG00000001048) #35 SLC6A11 (ENSPLOG00000000895) #36 ATP2B2 (ENSPLOG00000000482) #37 SEC13 (ENSPLOG00000000172) leopard MODERN SPECIES 154 NR2C2 (ENSPPRG00000013873) MRPS25 (ENSPPRG00000013901) RBSN (ENSPPRG00000013941) #7 TRH (ENSPPRG00000013952) #8 TMCC1 (ENSPPRG00000014113) #12 PLXND1 (ENSPPRG00000014283) #13 H1-8 (ENSPPRG00000014444) #14 RHO (ENSPPRG00000014471) #15 ENSPPRG00000014504 IFT122 (ENSPPRG00000015865) #16 MBD4 (ENSPPRG00000016480) #17 EFCAB12 (ENSPPRG00000016816) #18 RPL32 (ENSPPRG00000016964) #19 CAND2 (ENSPPRG00000017246) #20 TMEM40 (ENSPPRG00000018566) #21 RAF1 (ENSPPRG00000021390) #22 MKRN2 (ENSPPRG00000021887) #23 MKRN2OS (ENSPPRG00000021987) #25 Tiger MODERN SPECIES 57 ENSPTIG00000016501 #12 ENSPTIG00000016640 H1-8 (ENSPTIG00000016687) #14 RHO (ENSPTIG00000016846) #15 IFT122 (ENSPTIG00000017825) #16 ENSPTIG00000012068 #17 EFCAB12 (ENSPTIG00000012496) #18 RPL32 (ENSPTIG00000013290) ##19 CAND2 (ENSPTIG00000014551) #20 TMEM40 (ENSPTIG00000016867) #21 RAF1 (ENSPTIG00000019431) #22 MKRN2 (ENSPTIG00000020261) #23 MKRN2OS (ENSPTIG00000020689) #25 TSEN2 (ENSPTIG00000021018) #26 PPARG (ENSPTIG00000021339) #27 SYN2 (ENSPTIG00000005386) #28 TIMP4 (ENSPTIG00000009274) #29 TAMM41 (ENSPTIG00000009439) #30 VGLL4 (ENSPTIG00000011766) #32 ATG7 (ENSPTIG00000012782) #33 HRH1 (ENSPTIG00000005327) #34 SLC6A1 (ENSPTIG00000015454) #35 SLC6A11 (ENSPTIG00000016056) #36 ATP2B2 (ENSPTIG00000016845) #37 SEC13 (ENSPTIG00000019088) GHRL (ENSPTIG00000020903) Cat MODERN SPECIES 1 NR2C2 (ENSFCAG00000003537) MRPS25 (ENSFCAG00000027687) RBSN (ENSFCAG00000025901) #7 TRH (ENSFCAG00000029423) #8 TMCC1 (ENSFCAG00000027586) #12 PLXND1 (ENSFCAG00000000095) #13 H1-8 (ENSFCAG00000000094) #14 RHO (ENSFCAG00000000092) #15 IFT122 (ENSFCAG00000000086) #16 MBD4 (ENSFCAG00000000083) #17 EFCAB12 (ENSFCAG00000000081) #18 RPL32 (ENSFCAG00000030450) ##19 CAND2 (ENSFCAG00000008340) #20 ENSFCAG00000052196 TMEM40 (ENSFCAG00000037003) #21 RAF1 (ENSFCAG00000026299) #22 MKRN2 (ENSFCAG00000007979) #23 ENSFCAG00000049119 MKRN2OS (ENSFCAG00000046813) #25 TSEN2 (ENSFCAG00000025500) #26 PPARG (ENSFCAG00000006231) #27 TIMP4 (ENSFCAG00000028966) #29 SYN2 (ENSFCAG00000006229) #28 TAMM41 (ENSFCAG00000030835) #30 VGLL4 (ENSFCAG00000003266) #32 ATG7 (ENSFCAG00000003263) #33 HRH1 (ENSFCAG00000034897) #34 SLC6A1 (ENSFCAG00000004345) #35 SLC6A11 (ENSFCAG00000006043) #36 ATP2B2 (ENSFCAG00000011247) #37 SEC13 (ENSFCAG00000011245) Laurasiatheria_c ANCESTRAL SPECIES 2 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Chiroptera ANCESTRAL SPECIES 54 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Microchiroptera ANCESTRAL SPECIES 16 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Microbat MODERN SPECIES 945 FGD5 (ENSMLUG00000010008) NR2C2 (ENSMLUG00000010062) ENSMLUG00000017504 RBSN (ENSMLUG00000010088) #7 TRH (ENSMLUG00000007249) #8 TMCC1 (ENSMLUG00000016755) #12 PLXND1 (ENSMLUG00000014790) #13 ENSMLUG00000025226 #14 RHO (ENSMLUG00000014786) #15 IFT122 (ENSMLUG00000014771) #16 MBD4 (ENSMLUG00000014766) #17 ENSMLUG00000014759 #18 RPL32 (ENSMLUG00000022528) ##19 CAND2 (ENSMLUG00000006333) #20 TMEM40 (ENSMLUG00000002835) #21 RAF1 (ENSMLUG00000017645) #22 MKRN2 (ENSMLUG00000017643) #23 MKRN2OS (ENSMLUG00000024734) #25 TSEN2 (ENSMLUG00000017641) #26 PPARG (ENSMLUG00000017638) #27 SYN2 (ENSMLUG00000006253) #28 TIMP4 (ENSMLUG00000006263) #29 TAMM41 (ENSMLUG00000015063) #30 VGLL4 (ENSMLUG00000010597) #32 ATG7 (ENSMLUG00000010572) #33 HRH1 (ENSMLUG00000010552) #34 SLC6A1 (ENSMLUG00000002027) #35 ENSMLUG00000009590 #36 ATP2B2 (ENSMLUG00000001467) #37 SEC13 (ENSMLUG00000004901) GHRL (ENSMLUG00000012014) Greater horseshoe bat MODERN SPECIES 8 NR2C2 (ENSRFEG00010017049) ENSRFEG00010017258 MRPS25 (ENSRFEG00010017280) RBSN (ENSRFEG00010017337) #7 TRH (ENSRFEG00010017403) #8 ENSRFEG00010017442 TMCC1 (ENSRFEG00010017473) #12 PLXND1 (ENSRFEG00010017592) #13 RHO (ENSRFEG00010017659) #15 IFT122 (ENSRFEG00010017745) #16 MBD4 (ENSRFEG00010018007) #17 EFCAB12 (ENSRFEG00010018070) #18 RPL32 (ENSRFEG00010018162) ##19 CAND2 (ENSRFEG00010018212) #20 TMEM40 (ENSRFEG00010018278) #21 RAF1 (ENSRFEG00010018423) #22 MKRN2 (ENSRFEG00010018469) #23 MKRN2OS (ENSRFEG00010018565) #25 TSEN2 (ENSRFEG00010018592) #26 PPARG (ENSRFEG00010018692) #27 SYN2 (ENSRFEG00010018840) #28 TIMP4 (ENSRFEG00010018875) #29 TAMM41 (ENSRFEG00010018912) #30 VGLL4 (ENSRFEG00010019005) #32 ATG7 (ENSRFEG00010019096) #33 HRH1 (ENSRFEG00010019159) #34 SLC6A1 (ENSRFEG00010019187) #35 SLC6A11 (ENSRFEG00010019331) #36 ATP2B2 (ENSRFEG00010019414) #37 ENSRFEG00010010425 ENSRFEG00010010629 Megabat MODERN SPECIES 1499 CAND2 (ENSPVAG00000005826) #20 TMEM40 (ENSPVAG00000005825) #21 RAF1 (ENSPVAG00000005823) #22 MKRN2 (ENSPVAG00000005822) #23 TSEN2 (ENSPVAG00000005820) #26 Equus DUPLICATION Equus ANCESTRAL SPECIES ENSGT00940000156084.`b #22 Horse MODERN SPECIES RPS24 (ENSECAG00000016939) ZMIZ1 (ENSECAG00000021528) ZCCHC24 (ENSECAG00000017763) PPIF (ENSECAG00000008796) ANXA11 (ENSECAG00000019671) ENSECAG00000045443 TMEM254 (ENSECAG00000013627) AGT (ENSECAG00000015711) COG2 (ENSECAG00000010075) ENSECAG00000050926 ENSECAG00000027790 PGBD5 (ENSECAG00000006175) GALNT2 (ENSECAG00000008653) ENSECAG00000035867 ENSECAG00000045954 ENSECAG00000033308 #22 URB2 (ENSECAG00000012338) TAF5L (ENSECAG00000016369) ABCB10 (ENSECAG00000017883) NUP133 (ENSECAG00000020760) ACTA1 (ENSECAG00000000207) CCSAP (ENSECAG00000005178) RAB4A (ENSECAG00000005207) RHOU (ENSECAG00000007462) ZNF22 (ENSECAG00000003034) RASSF4 (ENSECAG00000007066) DEPP1 (ENSECAG00000046594) ENSECAG00000045917 TMEM72 (ENSECAG00000016463) CXCL12 (ENSECAG00000019551) ZNF32 (ENSECAG00000023676) Equus DUPLICATION Equus DUPLICATION Equus ANCESTRAL SPECIES ENSGT00940000156084.ab.a.a #22 Donkey DUPLICATION Donkey MODERN SPECIES 11 ENSEASG00005022991 SAMD8 (ENSEASG00005022992) VDAC2 (ENSEASG00005022993) COMTD1 (ENSEASG00005022994) ZNF503 (ENSEASG00005022995) ENSEASG00005022998 ENSEASG00005028521 ENSEASG00005025433 ENSEASG00005012078 COG2 (ENSEASG00005012075) ENSEASG00005012074 PGBD5 (ENSEASG00005012072) ENSEASG00005012066 ENSEASG00005012068 ENSEASG00005034731 #22 ENSEASG00005012065 #22 ENSEASG00005012060 TAF5L (ENSEASG00005012053) ABCB10 (ENSEASG00005011975) NUP133 (ENSEASG00005010841) ACTA1 (ENSEASG00005031337) CCSAP (ENSEASG00005010775) RAB4A (ENSEASG00005010764) ENSEASG00005026208 ENSEASG00005025602 RASSF4 (ENSEASG00005006918) DEPP1 (ENSEASG00005006924) TMEM72 (ENSEASG00005033345) CXCL12 (ENSEASG00005031864) ZNF32 (ENSEASG00005030797) ENSEASG00005028506 Donkey MODERN SPECIES 11 DUSP13 (ENSEASG00005035904) ENSEASG00005022991 SAMD8 (ENSEASG00005022992) VDAC2 (ENSEASG00005022993) COMTD1 (ENSEASG00005022994) ZNF503 (ENSEASG00005022995) ENSEASG00005022998 ENSEASG00005028521 ENSEASG00005025433 ENSEASG00005012078 COG2 (ENSEASG00005012075) ENSEASG00005012074 PGBD5 (ENSEASG00005012072) ENSEASG00005012066 ENSEASG00005012068 ENSEASG00005034731 #22 ENSEASG00005012065 #22 ENSEASG00005012060 TAF5L (ENSEASG00005012053) ABCB10 (ENSEASG00005011975) NUP133 (ENSEASG00005010841) ACTA1 (ENSEASG00005031337) CCSAP (ENSEASG00005010775) RAB4A (ENSEASG00005010764) ENSEASG00005026208 ENSEASG00005025602 RASSF4 (ENSEASG00005006918) DEPP1 (ENSEASG00005006924) TMEM72 (ENSEASG00005033345) CXCL12 (ENSEASG00005031864) ZNF32 (ENSEASG00005030797) Equus ANCESTRAL SPECIES 5 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084.ab.a.b #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT01030000235208 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Horse MODERN SPECIES 7 FGD5 (ENSECAG00000016458) NR2C2 (ENSECAG00000003791) MRPS25 (ENSECAG00000020841) RBSN (ENSECAG00000021486) #7 TRH (ENSECAG00000006178) #8 TMCC1 (ENSECAG00000006725) #12 PLXND1 (ENSECAG00000009159) #13 H1-8 (ENSECAG00000013614) #14 RHO (ENSECAG00000013709) #15 IFT122 (ENSECAG00000015360) #16 MBD4 (ENSECAG00000022106) #17 CAND2 (ENSECAG00000010515) #20 RPL32 (ENSECAG00000049946) ##19 TMEM40 (ENSECAG00000008940) #21 ENSECAG00000033555 RAF1 (ENSECAG00000011807) #22 MKRN2 (ENSECAG00000024404) #23 MKRN2OS (ENSECAG00000012416) TSEN2 (ENSECAG00000012813) #26 ENSECAG00000039510 PPARG (ENSECAG00000016664) #27 SYN2 (ENSECAG00000049642) #28 TIMP4 (ENSECAG00000011609) #29 TAMM41 (ENSECAG00000013860) #30 VGLL4 (ENSECAG00000039947) #32 ATG7 (ENSECAG00000022756) #33 ENSECAG00000048096 ENSECAG00000057850 HRH1 (ENSECAG00000004544) #34 SLC6A1 (ENSECAG00000000699) #35 SLC6A11 (ENSECAG00000004220) #36 Donkey MODERN SPECIES 13 ENSEASG00005015425 NR2C2 (ENSEASG00005015422) ENSEASG00005015419 ENSEASG00005015384 #7 ENSEASG00005015376 #8 TMCC1 (ENSEASG00005015373) #12 PLXND1 (ENSEASG00005015351) #13 H1-8 (ENSEASG00005025925) #14 RHO (ENSEASG00005015347) #15 IFT122 (ENSEASG00005014840) #16 MBD4 (ENSEASG00005014800) #17 ENSEASG00005014792 ##19 CAND2 (ENSEASG00005014788) #20 ENSEASG00005025405 TMEM40 (ENSEASG00005033260) #21 ENSEASG00005014777 #22 MKRN2 (ENSEASG00005014776) #23 MKRN2OS (ENSEASG00005035083) #25 ENSEASG00005014772 TSEN2 (ENSEASG00005014763) #26 PPARG (ENSEASG00005014732) #27 TIMP4 (ENSEASG00005030754) #29 SYN2 (ENSEASG00005014311) #28 TAMM41 (ENSEASG00005014302) #30 VGLL4 (ENSEASG00005014301) #32 ENSEASG00005027051 ATG7 (ENSEASG00005014298) #33 HRH1 (ENSEASG00005025266) #34 SLC6A1 (ENSEASG00005014296) #35 SLC6A11 (ENSEASG00005014295) #36 ENSEASG00005034257 Equus ANCESTRAL SPECIES ENSGT00940000156084.ab.b #22 Donkey MODERN SPECIES 13 NKIRAS1 (ENSEASG00005026235) ENSEASG00005027441 NR1D2 (ENSEASG00005005978) THRB (ENSEASG00005005979) RARB (ENSEASG00005005983) TOP2B (ENSEASG00005005985) NGLY1 (ENSEASG00005005991) OXSM (ENSEASG00005005992) LRRC3B (ENSEASG00005024092) NEK10 (ENSEASG00005006003) SLC4A7 (ENSEASG00005006058) EOMES (ENSEASG00005006127) CMC1 (ENSEASG00005030717) AZI2 (ENSEASG00005006140) ENSEASG00005006144 ENSEASG00005033576 #22 TGFBR2 (ENSEASG00005006161) GADL1 (ENSEASG00005006169) ENSEASG00005033041 STT3B (ENSEASG00005006174) OSBPL10 (ENSEASG00005006177) GPD1L (ENSEASG00005006178) CMTM8 (ENSEASG00005006179) CMTM7 (ENSEASG00005034930) CMTM6 (ENSEASG00005034157) DYNC1LI1 (ENSEASG00005006183) CNOT10 (ENSEASG00005006189) TRIM71 (ENSEASG00005006192) CCR4 (ENSEASG00005031493) GLB1 (ENSEASG00005006196) TMPPE (ENSEASG00005031717)