Laurasiatheria ANCESTRAL SPECIES 2 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT00930000152979 ENSGT00940000175447 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 Laurasiatheria_a ANCESTRAL SPECIES 3 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000175447 ENSGT00930000152979 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 Laurasiatheria_b ANCESTRAL SPECIES 2 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Carnivora ANCESTRAL SPECIES 6 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00940000153973.c.a.b.a.b #19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 Caniformia ANCESTRAL SPECIES 4 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 Canidae ANCESTRAL SPECIES ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.a.b #19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00940000162517.e.b.b #31 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 Canis_lupus ANCESTRAL SPECIES 1 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00950000183087.A.a.a.b.p.a.a #9 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.a.b #19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00940000162517.e.b.b #31 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Dingo MODERN SPECIES 236 RBSN (ENSCAFG00020006347) #7 TRH (ENSCAFG00020006350) #8 ENSCAFG00020006352 #9 ENSCAFG00020006358 #10 ENSCAFG00020006362 #11 ENSCAFG00020006372 #12 PLXND1 (ENSCAFG00020006389) #13 H1-8 (ENSCAFG00020006486) #14 RHO (ENSCAFG00020006492) #15 IFT122 (ENSCAFG00020006537) #16 MBD4 (ENSCAFG00020007082) #17 EFCAB12 (ENSCAFG00020007096) #18 RPL32 (ENSCAFG00020007109) #19 CAND2 (ENSCAFG00020007135) #20 TMEM40 (ENSCAFG00020007225) #21 RAF1 (ENSCAFG00020007230) #22 MKRN2 (ENSCAFG00020007243) #23 ENSCAFG00020007244 #24 MKRN2OS (ENSCAFG00020007247) #25 TSEN2 (ENSCAFG00020007250) #26 PPARG (ENSCAFG00020007261) #27 SYN2 (ENSCAFG00020007281) #28 TIMP4 (ENSCAFG00020007541) #29 TAMM41 (ENSCAFG00020007562) #30 ENSCAFG00020007566 #31 VGLL4 (ENSCAFG00020007573) #32 ATG7 (ENSCAFG00020007592) #33 HRH1 (ENSCAFG00020007622) #34 SLC6A1 (ENSCAFG00020007634) #35 SLC6A11 (ENSCAFG00020007842) #36 ATP2B2 (ENSCAFG00020007890) #37 Dog MODERN SPECIES 12 MRPS25 (ENSCAFG00845026361) ENSCAFG00845026464 #7 TRH (ENSCAFG00845026628) #8 ENSCAFG00845026667 #9 TMCC1 (ENSCAFG00845026698) #12 RPL26 (ENSCAFG00845026761) #10 PLXND1 (ENSCAFG00845026992) #13 H1-8 (ENSCAFG00845027541) #14 RHO (ENSCAFG00845027581) #15 IFT122 (ENSCAFG00845027707) #16 MBD4 (ENSCAFG00845028304) #17 ENSCAFG00845028379 #18 RPL32 (ENSCAFG00845028446) #19 CAND2 (ENSCAFG00845028524) #20 TMEM40 (ENSCAFG00845028589) #21 RAF1 (ENSCAFG00845028676) #22 ENSCAFG00845028720 MKRN2 (ENSCAFG00845028765) #23 ENSCAFG00845028837 MKRN2OS (ENSCAFG00845028857) #25 TSEN2 (ENSCAFG00845028923) #26 PPARG (ENSCAFG00845029007) #27 SYN2 (ENSCAFG00845029109) #28 TIMP4 (ENSCAFG00845029189) #29 TAMM41 (ENSCAFG00845005937) #30 ENSCAFG00845005976 VGLL4 (ENSCAFG00845006044) #32 ATG7 (ENSCAFG00845006288) #33 HRH1 (ENSCAFG00845006605) #34 SLC6A1 (ENSCAFG00845006668) #35 SLC6A11 (ENSCAFG00845006781) #36 Red fox MODERN SPECIES 130 NR2C2 (ENSVVUG00000013819) ENSVVUG00000013842 MRPS25 (ENSVVUG00000013846) RBSN (ENSVVUG00000013853) #7 TRH (ENSVVUG00000013865) #8 TMCC1 (ENSVVUG00000013886) #12 PLXND1 (ENSVVUG00000013916) #13 H1-8 (ENSVVUG00000014145) #14 RHO (ENSVVUG00000014149) #15 IFT122 (ENSVVUG00000014184) #16 MBD4 (ENSVVUG00000014222) #17 EFCAB12 (ENSVVUG00000014226) #18 RPL32 (ENSVVUG00000014231) ##19 CAND2 (ENSVVUG00000014272) #20 ENSVVUG00000015228 RAF1 (ENSVVUG00000015233) #22 MKRN2 (ENSVVUG00000015240) #23 ENSVVUG00000015242 ENSVVUG00000015244 ENSVVUG00000015247 ENSVVUG00000015251 #25 TSEN2 (ENSVVUG00000015253) #26 PPARG (ENSVVUG00000015266) #27 ENSVVUG00000015270 SYN2 (ENSVVUG00000015294) #28 TIMP4 (ENSVVUG00000015655) #29 ENSVVUG00000015666 TAMM41 (ENSVVUG00000015667) #30 ENSVVUG00000015670 #31 VGLL4 (ENSVVUG00000015675) #32 ATG7 (ENSVVUG00000015693) #33 Caniformia_b ANCESTRAL SPECIES 16 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Mustelinae ANCESTRAL SPECIES 18 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Ferret MODERN SPECIES 163 NR2C2 (ENSMPUG00000017249) MRPS25 (ENSMPUG00000017248) RBSN (ENSMPUG00000017247) #7 TRH (ENSMPUG00000017246) #8 TMCC1 (ENSMPUG00000017243) #12 ENSMPUG00000017241 PLXND1 (ENSMPUG00000017238) #13 ENSMPUG00000017237 RHO (ENSMPUG00000017225) #15 IFT122 (ENSMPUG00000017197) #16 MBD4 (ENSMPUG00000017195) #17 EFCAB12 (ENSMPUG00000017190) #18 ENSMPUG00000017189 ##19 CAND2 (ENSMPUG00000017188) #20 TMEM40 (ENSMPUG00000017187) #21 RAF1 (ENSMPUG00000017185) #22 MKRN2 (ENSMPUG00000017184) #23 MKRN2OS (ENSMPUG00000017183) #25 TSEN2 (ENSMPUG00000017182) #26 PPARG (ENSMPUG00000017181) #27 TIMP4 (ENSMPUG00000017178) #29 SYN2 (ENSMPUG00000017176) #28 TAMM41 (ENSMPUG00000017175) #30 VGLL4 (ENSMPUG00000017174) #32 ATG7 (ENSMPUG00000017171) #33 HRH1 (ENSMPUG00000020115) #34 SLC6A1 (ENSMPUG00000017170) #35 SLC6A11 (ENSMPUG00000017168) #36 ENSMPUG00000017167 ATP2B2 (ENSMPUG00000017163) #37 SEC13 (ENSMPUG00000017161) American mink MODERN SPECIES 287 NR2C2 (ENSNVIG00000009821) MRPS25 (ENSNVIG00000009805) RBSN (ENSNVIG00000009795) #7 TRH (ENSNVIG00000009787) #8 TMCC1 (ENSNVIG00000009775) #12 PLXND1 (ENSNVIG00000009720) #13 H1-8 (ENSNVIG00000009706) #14 RHO (ENSNVIG00000009693) #15 IFT122 (ENSNVIG00000009217) #16 MBD4 (ENSNVIG00000009126) #17 EFCAB12 (ENSNVIG00000009088) #18 ENSNVIG00000009040 #19 CAND2 (ENSNVIG00000008985) #20 TMEM40 (ENSNVIG00000008852) #21 ENSNVIG00000008812 RAF1 (ENSNVIG00000008700) #22 MKRN2 (ENSNVIG00000008629) #23 MKRN2OS (ENSNVIG00000008607) #25 TSEN2 (ENSNVIG00000008550) #26 PPARG (ENSNVIG00000008444) #27 TIMP4 (ENSNVIG00000008416) #29 ENSNVIG00000008402 SYN2 (ENSNVIG00000008362) #28 Ursidae ANCESTRAL SPECIES 11 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b.d #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Ursus ANCESTRAL SPECIES 43 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b.d #15 ENSGT00390000001016.b #16 ENSGT00390000012138.a.a.j.s.b ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.c.a ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B American black bear DUPLICATION American black bear MODERN SPECIES 4165 ENSUAMG00000022973 #22 MKRN2 (ENSUAMG00000023641) #23 ENSUAMG00000023642 American black bear MODERN SPECIES 4166 ENSUAMG00000023646 #22 Polar bear MODERN SPECIES 210 FGD5 (ENSUMAG00000017065) NR2C2 (ENSUMAG00000017295) MRPS25 (ENSUMAG00000017301) RBSN (ENSUMAG00000017308) #7 TRH (ENSUMAG00000017316) #8 TMCC1 (ENSUMAG00000017322) #12 PLXND1 (ENSUMAG00000017372) #13 RHO (ENSUMAG00000017511) #15 IFT122 (ENSUMAG00000017522) #16 MBD4 (ENSUMAG00000017542) #17 ENSUMAG00000017544 EFCAB12 (ENSUMAG00000017549) #18 RPL32 (ENSUMAG00000017557) ##19 CAND2 (ENSUMAG00000017566) #20 TMEM40 (ENSUMAG00000017596) #21 RAF1 (ENSUMAG00000017600) #22 MKRN2 (ENSUMAG00000017606) #23 MKRN2OS (ENSUMAG00000017608) #25 TSEN2 (ENSUMAG00000017610) #26 PPARG (ENSUMAG00000017617) #27 SYN2 (ENSUMAG00000017656) #28 TIMP4 (ENSUMAG00000017853) #29 TAMM41 (ENSUMAG00000017859) #30 VGLL4 (ENSUMAG00000017868) #32 ATG7 (ENSUMAG00000017892) #33 HRH1 (ENSUMAG00000017957) #34 SLC6A1 (ENSUMAG00000017999) #35 SLC6A11 (ENSUMAG00000018214) #36 ATP2B2 (ENSUMAG00000018280) #37 SEC13 (ENSUMAG00000018614) GHRL (ENSUMAG00000018619) Giant Panda MODERN SPECIES 14 MRPS25 (ENSAMEG00000027927) ENSAMEG00000004361 #7 TRH (ENSAMEG00000025033) #8 TMCC1 (ENSAMEG00000004384) #12 PLXND1 (ENSAMEG00000004387) #13 H1-8 (ENSAMEG00000004448) #14 RHO (ENSAMEG00000004453) #15 IFT122 (ENSAMEG00000004471) #16 ENSAMEG00000030948 MBD4 (ENSAMEG00000004562) #17 ENSAMEG00000004574 #18 RPL32 (ENSAMEG00000004583) ##19 CAND2 (ENSAMEG00000004596) #20 TMEM40 (ENSAMEG00000004646) #21 ENSAMEG00000025362 RAF1 (ENSAMEG00000004650) #22 MKRN2 (ENSAMEG00000004720) #23 MKRN2OS (ENSAMEG00000004745) #25 TSEN2 (ENSAMEG00000004748) #26 PPARG (ENSAMEG00000004774) #27 TIMP4 (ENSAMEG00000004836) #29 SYN2 (ENSAMEG00000004794) #28 TAMM41 (ENSAMEG00000010999) #30 VGLL4 (ENSAMEG00000011011) #32 ATG7 (ENSAMEG00000013130) #33 HRH1 (ENSAMEG00000019211) #34 SLC6A1 (ENSAMEG00000028234) #35 SLC6A11 (ENSAMEG00000013958) #36 ATP2B2 (ENSAMEG00000015866) #37 SEC13 (ENSAMEG00000015994) GHRL (ENSAMEG00000016009) Felidae ANCESTRAL SPECIES 17 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Panthera ANCESTRAL SPECIES 1 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Panthera_a ANCESTRAL SPECIES ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000009113.a.a.q.a.a ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B lion MODERN SPECIES 2 FGD5 (ENSPLOG00000002817) NR2C2 (ENSPLOG00000002757) MRPS25 (ENSPLOG00000002725) RBSN (ENSPLOG00000002563) #7 TRH (ENSPLOG00000002548) #8 TMCC1 (ENSPLOG00000002518) #12 PLXND1 (ENSPLOG00000002460) #13 H1-8 (ENSPLOG00000002423) #14 RHO (ENSPLOG00000002405) #15 IFT122 (ENSPLOG00000002159) #16 MBD4 (ENSPLOG00000002021) #17 EFCAB12 (ENSPLOG00000001903) #18 RPL32 (ENSPLOG00000001870) ##19 CAND2 (ENSPLOG00000001847) #20 TMEM40 (ENSPLOG00000001779) #21 RAF1 (ENSPLOG00000001743) #22 MKRN2 (ENSPLOG00000001691) #23 MKRN2OS (ENSPLOG00000001659) #25 TSEN2 (ENSPLOG00000001594) #26 PPARG (ENSPLOG00000001496) #27 TIMP4 (ENSPLOG00000001454) #29 SYN2 (ENSPLOG00000001422) #28 TAMM41 (ENSPLOG00000001396) #30 VGLL4 (ENSPLOG00000001346) #32 ENSPLOG00000001305 ATG7 (ENSPLOG00000001203) #33 HRH1 (ENSPLOG00000001150) #34 SLC6A1 (ENSPLOG00000001048) #35 SLC6A11 (ENSPLOG00000000895) #36 ATP2B2 (ENSPLOG00000000482) #37 SEC13 (ENSPLOG00000000172) leopard MODERN SPECIES 154 NR2C2 (ENSPPRG00000013873) MRPS25 (ENSPPRG00000013901) RBSN (ENSPPRG00000013941) #7 TRH (ENSPPRG00000013952) #8 TMCC1 (ENSPPRG00000014113) #12 PLXND1 (ENSPPRG00000014283) #13 H1-8 (ENSPPRG00000014444) #14 RHO (ENSPPRG00000014471) #15 ENSPPRG00000014504 IFT122 (ENSPPRG00000015865) #16 MBD4 (ENSPPRG00000016480) #17 EFCAB12 (ENSPPRG00000016816) #18 RPL32 (ENSPPRG00000016964) #19 CAND2 (ENSPPRG00000017246) #20 TMEM40 (ENSPPRG00000018566) #21 RAF1 (ENSPPRG00000021390) #22 MKRN2 (ENSPPRG00000021887) #23 MKRN2OS (ENSPPRG00000021987) #25 Tiger MODERN SPECIES 57 ENSPTIG00000016501 #12 ENSPTIG00000016640 H1-8 (ENSPTIG00000016687) #14 RHO (ENSPTIG00000016846) #15 IFT122 (ENSPTIG00000017825) #16 ENSPTIG00000012068 #17 EFCAB12 (ENSPTIG00000012496) #18 RPL32 (ENSPTIG00000013290) ##19 CAND2 (ENSPTIG00000014551) #20 TMEM40 (ENSPTIG00000016867) #21 RAF1 (ENSPTIG00000019431) #22 MKRN2 (ENSPTIG00000020261) #23 MKRN2OS (ENSPTIG00000020689) #25 TSEN2 (ENSPTIG00000021018) #26 PPARG (ENSPTIG00000021339) #27 SYN2 (ENSPTIG00000005386) #28 TIMP4 (ENSPTIG00000009274) #29 TAMM41 (ENSPTIG00000009439) #30 VGLL4 (ENSPTIG00000011766) #32 ATG7 (ENSPTIG00000012782) #33 HRH1 (ENSPTIG00000005327) #34 SLC6A1 (ENSPTIG00000015454) #35 SLC6A11 (ENSPTIG00000016056) #36 ATP2B2 (ENSPTIG00000016845) #37 SEC13 (ENSPTIG00000019088) GHRL (ENSPTIG00000020903) Cat MODERN SPECIES 1 NR2C2 (ENSFCAG00000003537) MRPS25 (ENSFCAG00000027687) RBSN (ENSFCAG00000025901) #7 TRH (ENSFCAG00000029423) #8 TMCC1 (ENSFCAG00000027586) #12 PLXND1 (ENSFCAG00000000095) #13 H1-8 (ENSFCAG00000000094) #14 RHO (ENSFCAG00000000092) #15 IFT122 (ENSFCAG00000000086) #16 MBD4 (ENSFCAG00000000083) #17 EFCAB12 (ENSFCAG00000000081) #18 RPL32 (ENSFCAG00000030450) ##19 CAND2 (ENSFCAG00000008340) #20 ENSFCAG00000052196 TMEM40 (ENSFCAG00000037003) #21 RAF1 (ENSFCAG00000026299) #22 MKRN2 (ENSFCAG00000007979) #23 ENSFCAG00000049119 MKRN2OS (ENSFCAG00000046813) #25 TSEN2 (ENSFCAG00000025500) #26 PPARG (ENSFCAG00000006231) #27 TIMP4 (ENSFCAG00000028966) #29 SYN2 (ENSFCAG00000006229) #28 TAMM41 (ENSFCAG00000030835) #30 VGLL4 (ENSFCAG00000003266) #32 ATG7 (ENSFCAG00000003263) #33 HRH1 (ENSFCAG00000034897) #34 SLC6A1 (ENSFCAG00000004345) #35 SLC6A11 (ENSFCAG00000006043) #36 ATP2B2 (ENSFCAG00000011247) #37 SEC13 (ENSFCAG00000011245) Laurasiatheria_c ANCESTRAL SPECIES 2 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Chiroptera ANCESTRAL SPECIES 54 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Microchiroptera ANCESTRAL SPECIES 16 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Microbat MODERN SPECIES 945 FGD5 (ENSMLUG00000010008) NR2C2 (ENSMLUG00000010062) ENSMLUG00000017504 RBSN (ENSMLUG00000010088) #7 TRH (ENSMLUG00000007249) #8 TMCC1 (ENSMLUG00000016755) #12 PLXND1 (ENSMLUG00000014790) #13 ENSMLUG00000025226 #14 RHO (ENSMLUG00000014786) #15 IFT122 (ENSMLUG00000014771) #16 MBD4 (ENSMLUG00000014766) #17 ENSMLUG00000014759 #18 RPL32 (ENSMLUG00000022528) ##19 CAND2 (ENSMLUG00000006333) #20 TMEM40 (ENSMLUG00000002835) #21 RAF1 (ENSMLUG00000017645) #22 MKRN2 (ENSMLUG00000017643) #23 MKRN2OS (ENSMLUG00000024734) #25 TSEN2 (ENSMLUG00000017641) #26 PPARG (ENSMLUG00000017638) #27 SYN2 (ENSMLUG00000006253) #28 TIMP4 (ENSMLUG00000006263) #29 TAMM41 (ENSMLUG00000015063) #30 VGLL4 (ENSMLUG00000010597) #32 ATG7 (ENSMLUG00000010572) #33 HRH1 (ENSMLUG00000010552) #34 SLC6A1 (ENSMLUG00000002027) #35 ENSMLUG00000009590 #36 ATP2B2 (ENSMLUG00000001467) #37 SEC13 (ENSMLUG00000004901) GHRL (ENSMLUG00000012014) Greater horseshoe bat MODERN SPECIES 8 NR2C2 (ENSRFEG00010017049) ENSRFEG00010017258 MRPS25 (ENSRFEG00010017280) RBSN (ENSRFEG00010017337) #7 TRH (ENSRFEG00010017403) #8 ENSRFEG00010017442 TMCC1 (ENSRFEG00010017473) #12 PLXND1 (ENSRFEG00010017592) #13 RHO (ENSRFEG00010017659) #15 IFT122 (ENSRFEG00010017745) #16 MBD4 (ENSRFEG00010018007) #17 EFCAB12 (ENSRFEG00010018070) #18 RPL32 (ENSRFEG00010018162) ##19 CAND2 (ENSRFEG00010018212) #20 TMEM40 (ENSRFEG00010018278) #21 RAF1 (ENSRFEG00010018423) #22 MKRN2 (ENSRFEG00010018469) #23 MKRN2OS (ENSRFEG00010018565) #25 TSEN2 (ENSRFEG00010018592) #26 PPARG (ENSRFEG00010018692) #27 SYN2 (ENSRFEG00010018840) #28 TIMP4 (ENSRFEG00010018875) #29 TAMM41 (ENSRFEG00010018912) #30 VGLL4 (ENSRFEG00010019005) #32 ATG7 (ENSRFEG00010019096) #33 HRH1 (ENSRFEG00010019159) #34 SLC6A1 (ENSRFEG00010019187) #35 SLC6A11 (ENSRFEG00010019331) #36 ATP2B2 (ENSRFEG00010019414) #37 ENSRFEG00010010425 ENSRFEG00010010629 Megabat MODERN SPECIES 1499 CAND2 (ENSPVAG00000005826) #20 TMEM40 (ENSPVAG00000005825) #21 RAF1 (ENSPVAG00000005823) #22 MKRN2 (ENSPVAG00000005822) #23 TSEN2 (ENSPVAG00000005820) #26 Equus DUPLICATION Equus ANCESTRAL SPECIES ENSGT00940000156084.`b #22 Horse MODERN SPECIES RPS24 (ENSECAG00000016939) ZMIZ1 (ENSECAG00000021528) ZCCHC24 (ENSECAG00000017763) PPIF (ENSECAG00000008796) ANXA11 (ENSECAG00000019671) ENSECAG00000045443 TMEM254 (ENSECAG00000013627) AGT (ENSECAG00000015711) COG2 (ENSECAG00000010075) ENSECAG00000050926 ENSECAG00000027790 PGBD5 (ENSECAG00000006175) GALNT2 (ENSECAG00000008653) ENSECAG00000035867 ENSECAG00000045954 ENSECAG00000033308 #22 URB2 (ENSECAG00000012338) TAF5L (ENSECAG00000016369) ABCB10 (ENSECAG00000017883) NUP133 (ENSECAG00000020760) ACTA1 (ENSECAG00000000207) CCSAP (ENSECAG00000005178) RAB4A (ENSECAG00000005207) RHOU (ENSECAG00000007462) ZNF22 (ENSECAG00000003034) RASSF4 (ENSECAG00000007066) DEPP1 (ENSECAG00000046594) ENSECAG00000045917 TMEM72 (ENSECAG00000016463) CXCL12 (ENSECAG00000019551) ZNF32 (ENSECAG00000023676) Equus DUPLICATION Equus DUPLICATION Equus ANCESTRAL SPECIES ENSGT00940000156084.ab.a.a #22 Donkey DUPLICATION Donkey MODERN SPECIES 11 ENSEASG00005022991 SAMD8 (ENSEASG00005022992) VDAC2 (ENSEASG00005022993) COMTD1 (ENSEASG00005022994) ZNF503 (ENSEASG00005022995) ENSEASG00005022998 ENSEASG00005028521 ENSEASG00005025433 ENSEASG00005012078 COG2 (ENSEASG00005012075) ENSEASG00005012074 PGBD5 (ENSEASG00005012072) ENSEASG00005012066 ENSEASG00005012068 ENSEASG00005034731 #22 ENSEASG00005012065 #22 ENSEASG00005012060 TAF5L (ENSEASG00005012053) ABCB10 (ENSEASG00005011975) NUP133 (ENSEASG00005010841) ACTA1 (ENSEASG00005031337) CCSAP (ENSEASG00005010775) RAB4A (ENSEASG00005010764) ENSEASG00005026208 ENSEASG00005025602 RASSF4 (ENSEASG00005006918) DEPP1 (ENSEASG00005006924) TMEM72 (ENSEASG00005033345) CXCL12 (ENSEASG00005031864) ZNF32 (ENSEASG00005030797) ENSEASG00005028506 Donkey MODERN SPECIES 11 DUSP13 (ENSEASG00005035904) ENSEASG00005022991 SAMD8 (ENSEASG00005022992) VDAC2 (ENSEASG00005022993) COMTD1 (ENSEASG00005022994) ZNF503 (ENSEASG00005022995) ENSEASG00005022998 ENSEASG00005028521 ENSEASG00005025433 ENSEASG00005012078 COG2 (ENSEASG00005012075) ENSEASG00005012074 PGBD5 (ENSEASG00005012072) ENSEASG00005012066 ENSEASG00005012068 ENSEASG00005034731 #22 ENSEASG00005012065 #22 ENSEASG00005012060 TAF5L (ENSEASG00005012053) ABCB10 (ENSEASG00005011975) NUP133 (ENSEASG00005010841) ACTA1 (ENSEASG00005031337) CCSAP (ENSEASG00005010775) RAB4A (ENSEASG00005010764) ENSEASG00005026208 ENSEASG00005025602 RASSF4 (ENSEASG00005006918) DEPP1 (ENSEASG00005006924) TMEM72 (ENSEASG00005033345) CXCL12 (ENSEASG00005031864) ZNF32 (ENSEASG00005030797) Equus ANCESTRAL SPECIES 5 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00950000186178 ENSGT00940000156084.ab.a.b #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT01030000235208 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B Horse MODERN SPECIES 7 FGD5 (ENSECAG00000016458) NR2C2 (ENSECAG00000003791) MRPS25 (ENSECAG00000020841) RBSN (ENSECAG00000021486) #7 TRH (ENSECAG00000006178) #8 TMCC1 (ENSECAG00000006725) #12 PLXND1 (ENSECAG00000009159) #13 H1-8 (ENSECAG00000013614) #14 RHO (ENSECAG00000013709) #15 IFT122 (ENSECAG00000015360) #16 MBD4 (ENSECAG00000022106) #17 CAND2 (ENSECAG00000010515) #20 RPL32 (ENSECAG00000049946) ##19 TMEM40 (ENSECAG00000008940) #21 ENSECAG00000033555 RAF1 (ENSECAG00000011807) #22 MKRN2 (ENSECAG00000024404) #23 MKRN2OS (ENSECAG00000012416) TSEN2 (ENSECAG00000012813) #26 ENSECAG00000039510 PPARG (ENSECAG00000016664) #27 SYN2 (ENSECAG00000049642) #28 TIMP4 (ENSECAG00000011609) #29 TAMM41 (ENSECAG00000013860) #30 VGLL4 (ENSECAG00000039947) #32 ATG7 (ENSECAG00000022756) #33 ENSECAG00000048096 ENSECAG00000057850 HRH1 (ENSECAG00000004544) #34 SLC6A1 (ENSECAG00000000699) #35 SLC6A11 (ENSECAG00000004220) #36 Donkey MODERN SPECIES 13 ENSEASG00005015425 NR2C2 (ENSEASG00005015422) ENSEASG00005015419 ENSEASG00005015384 #7 ENSEASG00005015376 #8 TMCC1 (ENSEASG00005015373) #12 PLXND1 (ENSEASG00005015351) #13 H1-8 (ENSEASG00005025925) #14 RHO (ENSEASG00005015347) #15 IFT122 (ENSEASG00005014840) #16 MBD4 (ENSEASG00005014800) #17 ENSEASG00005014792 ##19 CAND2 (ENSEASG00005014788) #20 ENSEASG00005025405 TMEM40 (ENSEASG00005033260) #21 ENSEASG00005014777 #22 MKRN2 (ENSEASG00005014776) #23 MKRN2OS (ENSEASG00005035083) #25 ENSEASG00005014772 TSEN2 (ENSEASG00005014763) #26 PPARG (ENSEASG00005014732) #27 TIMP4 (ENSEASG00005030754) #29 SYN2 (ENSEASG00005014311) #28 TAMM41 (ENSEASG00005014302) #30 VGLL4 (ENSEASG00005014301) #32 ENSEASG00005027051 ATG7 (ENSEASG00005014298) #33 HRH1 (ENSEASG00005025266) #34 SLC6A1 (ENSEASG00005014296) #35 SLC6A11 (ENSEASG00005014295) #36 ENSEASG00005034257 Equus ANCESTRAL SPECIES ENSGT00940000156084.ab.b #22 Donkey MODERN SPECIES 13 NKIRAS1 (ENSEASG00005026235) ENSEASG00005027441 NR1D2 (ENSEASG00005005978) THRB (ENSEASG00005005979) RARB (ENSEASG00005005983) TOP2B (ENSEASG00005005985) NGLY1 (ENSEASG00005005991) OXSM (ENSEASG00005005992) LRRC3B (ENSEASG00005024092) NEK10 (ENSEASG00005006003) SLC4A7 (ENSEASG00005006058) EOMES (ENSEASG00005006127) CMC1 (ENSEASG00005030717) AZI2 (ENSEASG00005006140) ENSEASG00005006144 ENSEASG00005033576 #22 TGFBR2 (ENSEASG00005006161) GADL1 (ENSEASG00005006169) ENSEASG00005033041 STT3B (ENSEASG00005006174) OSBPL10 (ENSEASG00005006177) GPD1L (ENSEASG00005006178) CMTM8 (ENSEASG00005006179) CMTM7 (ENSEASG00005034930) CMTM6 (ENSEASG00005034157) DYNC1LI1 (ENSEASG00005006183) CNOT10 (ENSEASG00005006189) TRIM71 (ENSEASG00005006192) CCR4 (ENSEASG00005031493) GLB1 (ENSEASG00005006196) TMPPE (ENSEASG00005031717) Artiodactyla ANCESTRAL SPECIES 2 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00930000152979 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT01010000229800 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 ENSGT00940000153393.B Artiodactyla_a ANCESTRAL SPECIES 18 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00930000152979 ENSGT00940000175447 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT01010000229800 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 ENSGT00940000153393.B Artiodactyla_b ANCESTRAL SPECIES 21 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000175447 ENSGT00930000152979 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT01010000229800 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 ENSGT00940000153393.B Cetacea ANCESTRAL SPECIES 7 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00930000152979 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT01010000229800 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B.`b ENSGT00390000004064 Odontoceti ANCESTRAL SPECIES 5 ENSGT00940000158393 ENSGT00640000091558.n ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00930000152979 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B.`b ENSGT00390000004064 Odontoceti_a ANCESTRAL SPECIES 5 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558.n ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B.`b ENSGT00390000004064 Odontoceti_b ANCESTRAL SPECIES 6 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558.n ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B.`b ENSGT00390000004064 Monodontidae ANCESTRAL SPECIES 4 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558.n ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B.`b ENSGT00390000004064 Narwhal MODERN SPECIES 310 FGD5 (ENSMMNG00015012622) NR2C2 (ENSMMNG00015012595) ENSMMNG00015012540 RBSN (ENSMMNG00015012525) #7 TRH (ENSMMNG00015012517) #8 TMCC1 (ENSMMNG00015012483) #12 PLXND1 (ENSMMNG00015012370) #13 H1-8 (ENSMMNG00015012313) #14 RHO (ENSMMNG00015012293) #15 IFT122 (ENSMMNG00015012203) #16 MBD4 (ENSMMNG00015012156) #17 EFCAB12 (ENSMMNG00015012144) #18 RPL32 (ENSMMNG00015012118) ##19 CAND2 (ENSMMNG00015012039) #20 TMEM40 (ENSMMNG00015012000) #21 RAF1 (ENSMMNG00015011951) #22 MKRN2 (ENSMMNG00015011904) #23 MKRN2OS (ENSMMNG00015011881) #25 TSEN2 (ENSMMNG00015011810) #26 PPARG (ENSMMNG00015011771) #27 TIMP4 (ENSMMNG00015011737) #29 SYN2 (ENSMMNG00015011708) #28 TAMM41 (ENSMMNG00015011672) #30 VGLL4 (ENSMMNG00015011616) #32 ATG7 (ENSMMNG00015011505) #33 HRH1 (ENSMMNG00015011469) #34 SLC6A1 (ENSMMNG00015011419) #35 SLC6A11 (ENSMMNG00015011359) #36 ENSMMNG00015011333 ATP2B2 (ENSMMNG00015011282) #37 SEC13 (ENSMMNG00015011196) Beluga whale MODERN SPECIES 66 NR2C2 (ENSDLEG00000008987) ENSDLEG00000008967 ENSDLEG00000008956 RBSN (ENSDLEG00000008914) #7 TRH (ENSDLEG00000008893) #8 TMCC1 (ENSDLEG00000008842) #12 PLXND1 (ENSDLEG00000008614) #13 H1-8 (ENSDLEG00000008521) #14 RHO (ENSDLEG00000008470) #15 IFT122 (ENSDLEG00000008304) #16 MBD4 (ENSDLEG00000008239) #17 ENSDLEG00000008201 #18 RPL32 (ENSDLEG00000008175) ##19 CAND2 (ENSDLEG00000008059) #20 TMEM40 (ENSDLEG00000008007) #21 RAF1 (ENSDLEG00000007956) #22 MKRN2 (ENSDLEG00000021478) #23 ENSDLEG00000021477 ENSDLEG00000021458 #27 TIMP4 (ENSDLEG00000021450) #29 SYN2 (ENSDLEG00000021448) #28 TAMM41 (ENSDLEG00000021438) #30 ATG7 (ENSDLEG00000021427) #33 HRH1 (ENSDLEG00000021424) #34 SLC6A1 (ENSDLEG00000021420) #35 SLC6A11 (ENSDLEG00000021059) #36 ATP2B2 (ENSDLEG00000015650) #37 SEC13 (ENSDLEG00000015045) GHRL (ENSDLEG00000015002) ENSDLEG00000014986 ENSDLEG00000014979 Vaquita MODERN SPECIES 2 NR2C2 (ENSPSNG00000022710) ENSPSNG00000022711 RBSN (ENSPSNG00000022712) #7 TRH (ENSPSNG00000022713) #8 ENSPSNG00000022714 #12 ENSPSNG00000022717 #12 PLXND1 (ENSPSNG00000022718) #13 H1-8 (ENSPSNG00000022719) #14 RHO (ENSPSNG00000022720) #15 IFT122 (ENSPSNG00000022721) #16 MBD4 (ENSPSNG00000022722) #17 EFCAB12 (ENSPSNG00000022723) #18 RPL32 (ENSPSNG00000022724) #19 CAND2 (ENSPSNG00000009832) #20 TMEM40 (ENSPSNG00000010002) #21 RAF1 (ENSPSNG00000010184) #22 MKRN2 (ENSPSNG00000010288) #23 MKRN2OS (ENSPSNG00000010409) #25 TSEN2 (ENSPSNG00000010460) #26 PPARG (ENSPSNG00000010554) #27 SYN2 (ENSPSNG00000010964) #28 TIMP4 (ENSPSNG00000011214) #29 TAMM41 (ENSPSNG00000011313) #30 VGLL4 (ENSPSNG00000011411) #32 ATG7 (ENSPSNG00000011678) #33 HRH1 (ENSPSNG00000012320) #34 SLC6A1 (ENSPSNG00000012418) #35 SLC6A11 (ENSPSNG00000013275) #36 ATP2B2 (ENSPSNG00000013827) #37 ENSPSNG00000015998 GHRL (ENSPSNG00000016272) Sperm whale MODERN SPECIES 9 NR2C2 (ENSPCTG00005005417) MRPS25 (ENSPCTG00005005475) RBSN (ENSPCTG00005005519) #7 TMCC1 (ENSPCTG00005005558) #12 ENSPCTG00005005601 TRH (ENSPCTG00005005621) #8 ENSPCTG00005005684 #13 ENSPCTG00005005647 H1-8 (ENSPCTG00005005747) #14 RHO (ENSPCTG00005005781) #15 IFT122 (ENSPCTG00005005825) #16 MBD4 (ENSPCTG00005005918) #17 EFCAB12 (ENSPCTG00005005960) #18 ENSPCTG00005006016 ##19 ENSPCTG00005006042 #20 RAF1 (ENSPCTG00005006081) #22 MKRN2 (ENSPCTG00005006141) #23 MKRN2OS (ENSPCTG00005006199) #25 PPARG (ENSPCTG00005006236) #27 SYN2 (ENSPCTG00005006330) #28 TIMP4 (ENSPCTG00005006355) #29 TAMM41 (ENSPCTG00005006384) #30 VGLL4 (ENSPCTG00005006432) #32 ATG7 (ENSPCTG00005006565) #33 HRH1 (ENSPCTG00005006823) #34 SLC6A1 (ENSPCTG00005006885) #35 SLC6A11 (ENSPCTG00005007501) #36 SEC13 (ENSPCTG00005007576) GHRL (ENSPCTG00005007648) TATDN2 (ENSPCTG00005007678) IRAK2 (ENSPCTG00005007701) Blue whale MODERN SPECIES 2 NR2C2 (ENSBMSG00010010995) MRPS25 (ENSBMSG00010010976) RBSN (ENSBMSG00010010963) #7 TRH (ENSBMSG00010010946) #8 TMCC1 (ENSBMSG00010010919) #12 PLXND1 (ENSBMSG00010010833) #13 ENSBMSG00010010803 RHO (ENSBMSG00010010727) #15 IFT122 (ENSBMSG00010010593) #16 ENSBMSG00010010542 ENSBMSG00010010533 #17 EFCAB12 (ENSBMSG00010010503) #18 RPL32 (ENSBMSG00010010483) ##19 CAND2 (ENSBMSG00010010467) #20 TMEM40 (ENSBMSG00010010438) #21 RAF1 (ENSBMSG00010010408) #22 MKRN2 (ENSBMSG00010010365) #23 MKRN2OS (ENSBMSG00010010343) #25 TSEN2 (ENSBMSG00010010317) #26 PPARG (ENSBMSG00010010135) #27 TIMP4 (ENSBMSG00010010106) #29 SYN2 (ENSBMSG00010010076) #28 TAMM41 (ENSBMSG00010010044) #30 ENSBMSG00010010031 ENSBMSG00010009994 #32 ATG7 (ENSBMSG00010009931) #33 HRH1 (ENSBMSG00010009905) #34 ENSBMSG00010009900 SLC6A1 (ENSBMSG00010009806) #35 SLC6A11 (ENSBMSG00010009702) #36 ATP2B2 (ENSBMSG00010008618) #37 Pecora ANCESTRAL SPECIES 17 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 ENSGT00940000153393.B Percora_a ANCESTRAL SPECIES 19 ENSGT00940000157922 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 ENSGT00940000153393.B Bovidae ANCESTRAL SPECIES 19 ENSGT00940000160690 #34 ENSGT00390000017509 #33 ENSGT00390000003282.B #32 ENSGT00390000000616.k #30 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616.l #30 ENSGT00390000007159 #7 ENSGT00640000091558 ENSGT00940000158393 ENSGT00940000157922 ENSGT00940000153655.B ENSGT00440000033958 ENSGT00940000155615 ENSGT00940000154583 Caprinae ANCESTRAL SPECIES 15 ENSGT00940000160690 #34 ENSGT00390000017509 #33 ENSGT00390000003282.B #32 ENSGT00390000000616.k #30 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616.l #30 ENSGT00390000007159 #7 ENSGT00640000091558 ENSGT00940000158393 ENSGT00940000157922 ENSGT00940000153655.B ENSGT00440000033958 ENSGT00940000155615 ENSGT00940000154583 Goat MODERN SPECIES 14 HRH1 (ENSCHIG00000012387) #34 ATG7 (ENSCHIG00000018813) #33 VGLL4 (ENSCHIG00000019976) #32 ENSCHIG00000002443 #30 TRH (ENSCHIG00000025325) #8 ENSCHIG00000015861 #12 ENSCHIG00000016746 #12 PLXND1 (ENSCHIG00000008763) #13 H1-8 (ENSCHIG00000015286) #14 RHO (ENSCHIG00000019086) #15 IFT122 (ENSCHIG00000018009) #16 MBD4 (ENSCHIG00000009760) #17 EFCAB12 (ENSCHIG00000024180) #18 RPL32 (ENSCHIG00000011099) ##19 CAND2 (ENSCHIG00000017799) #20 RAF1 (ENSCHIG00000006954) #22 MKRN2 (ENSCHIG00000021098) #23 MKRN2OS (ENSCHIG00000013445) #25 TSEN2 (ENSCHIG00000013772) #26 PPARG (ENSCHIG00000015877) #27 SYN2 (ENSCHIG00000024912) #28 TIMP4 (ENSCHIG00000017995) #29 ENSCHIG00000027078 #30 RBSN (ENSCHIG00000019361) #7 MRPS25 (ENSCHIG00000009931) NR2C2 (ENSCHIG00000008676) FGD5 (ENSCHIG00000023792) C3orf20 (ENSCHIG00000009719) CCDC174 (ENSCHIG00000008286) GRIP2 (ENSCHIG00000016620) SLC6A6 (ENSCHIG00000024785) Rambouillet Sheep MODERN SPECIES 10 ATG7 (ENSOARG00020025688) #33 VGLL4 (ENSOARG00020025701) #32 ENSOARG00020025707 TAMM41 (ENSOARG00020025710) #30 TRH (ENSOARG00020025716) #8 TMCC1 (ENSOARG00020025721) #12 PLXND1 (ENSOARG00020025735) #13 ENSOARG00020025760 RHO (ENSOARG00020025763) #15 IFT122 (ENSOARG00020025765) #16 MBD4 (ENSOARG00020025769) #17 EFCAB12 (ENSOARG00020025775) #18 RPL32 (ENSOARG00020025785) ##19 CAND2 (ENSOARG00020025794) #20 TMEM40 (ENSOARG00020025803) #21 RAF1 (ENSOARG00020025810) #22 MKRN2 (ENSOARG00020025818) #23 MKRN2OS (ENSOARG00020025824) #25 TSEN2 (ENSOARG00020025828) #26 PPARG (ENSOARG00020025834) #27 SYN2 (ENSOARG00020025846) #28 ENSOARG00020025856 #29 RBSN (ENSOARG00020025862) #7 MRPS25 (ENSOARG00020025871) NR2C2 (ENSOARG00020025878) C3orf20 (ENSOARG00020025893) CCDC174 (ENSOARG00020025904) GRIP2 (ENSOARG00020025919) SLC6A6 (ENSOARG00020025943) ENSOARG00020025950 TMEM43 (ENSOARG00020025957) Bovinae ANCESTRAL SPECIES 16 ENSGT00390000003282.B #32 ENSGT00390000000616.k #30 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT00930000152979 ENSGT00940000175447 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616.l #30 ENSGT00390000007159 #7 ENSGT00640000091558 ENSGT00940000158393 ENSGT00940000157922 ENSGT00940000153655.B ENSGT00440000033958 ENSGT00940000155615 ENSGT00940000154583 Bos ANCESTRAL SPECIES 16 ENSGT00390000003282.B #32 ENSGT00390000000616.k #30 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT00930000152979 ENSGT00940000175447 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616.l #30 ENSGT00390000007159 #7 ENSGT00640000091558 ENSGT00940000158393 ENSGT00940000157922 ENSGT00940000153655.B ENSGT00440000033958 ENSGT00940000155615 ENSGT00940000154583 Bos_a ANCESTRAL SPECIES 9 ENSGT00390000017509 #33 ENSGT00390000003282.B #32 ENSGT00390000000616.k #30 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT00930000152979 ENSGT00940000175447 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000007159 #7 ENSGT00640000091558 ENSGT00940000158393 ENSGT00940000157922 ENSGT00940000153655.B ENSGT00440000033958 ENSGT00940000155615 ENSGT00940000154583 ENSGT00390000013951 ENSGT00390000005194 Wild yak MODERN SPECIES 1473 TRH (ENSBMUG00000009602) #8 ENSBMUG00000009609 TMCC1 (ENSBMUG00000009638) #12 ENSBMUG00000009719 ENSBMUG00000009729 RHO (ENSBMUG00000009767) #15 IFT122 (ENSBMUG00000010042) #16 MBD4 (ENSBMUG00000010711) #17 EFCAB12 (ENSBMUG00000010745) #18 RPL32 (ENSBMUG00000010768) ##19 CAND2 (ENSBMUG00000010855) #20 TMEM40 (ENSBMUG00000010953) #21 ENSBMUG00000010983 RAF1 (ENSBMUG00000011029) #22 MKRN2 (ENSBMUG00000011049) #23 MKRN2OS (ENSBMUG00000011070) #25 PPARG (ENSBMUG00000011177) #27 SYN2 (ENSBMUG00000011214) #28 ENSBMUG00000011252 #29 Domestic yak MODERN SPECIES 14 ENSBGRG00000024715 #32 TAMM41 (ENSBGRG00000024630) #30 TRH (ENSBGRG00000024598) #8 ENSBGRG00000024583 TMCC1 (ENSBGRG00000024493) #12 ENSBGRG00000024462 ENSBGRG00000024437 ENSBGRG00000024409 #14 RHO (ENSBGRG00000024373) #15 IFT122 (ENSBGRG00000023990) #16 MBD4 (ENSBGRG00000023851) #17 EFCAB12 (ENSBGRG00000023675) #18 RPL32 (ENSBGRG00000023548) ##19 CAND2 (ENSBGRG00000023333) #20 TMEM40 (ENSBGRG00000023210) #21 RAF1 (ENSBGRG00000022891) #22 MKRN2 (ENSBGRG00000022735) #23 MKRN2OS (ENSBGRG00000022696) #25 ENSBGRG00000022315 #27 TIMP4 (ENSBGRG00000022226) #29 SYN2 (ENSBGRG00000021920) #28 RBSN (ENSBGRG00000021762) #7 MRPS25 (ENSBGRG00000021676) NR2C2 (ENSBGRG00000021614) FGD5 (ENSBGRG00000021386) C3orf20 (ENSBGRG00000021321) CCDC174 (ENSBGRG00000021048) GRIP2 (ENSBGRG00000020144) SLC6A6 (ENSBGRG00000019545) ENSBGRG00000019432 XPC (ENSBGRG00000018846) Bos_b ANCESTRAL SPECIES 17 ENSGT00940000160690 #34 ENSGT00390000017509 #33 ENSGT00390000003282.B #32 ENSGT00390000000616.k #30 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.d ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000156062 #28 ENSGT00940000159798 #29 ENSGT00390000000616.l #30 ENSGT00390000007159 #7 ENSGT00640000091558 ENSGT00940000158393 ENSGT00940000157922 ENSGT00940000153655.B ENSGT00440000033958 ENSGT00940000155615 ENSGT00940000154583 Hybrid Bos Indicus MODERN SPECIES 14 HRH1 (ENSBIXG00005024745) #34 ATG7 (ENSBIXG00005024877) #33 ENSBIXG00005025048 #32 TRH (ENSBIXG00005025098) #8 ENSBIXG00005025108 ENSBIXG00005025137 TMCC1 (ENSBIXG00005025216) #12 PLXND1 (ENSBIXG00005025560) #13 ENSBIXG00005025593 #14 RHO (ENSBIXG00005025616) #15 IFT122 (ENSBIXG00005025735) #16 MBD4 (ENSBIXG00005025831) #17 RPL32 (ENSBIXG00005025898) ##19 CAND2 (ENSBIXG00005025955) #20 TMEM40 (ENSBIXG00005026020) #21 RAF1 (ENSBIXG00005004450) #22 MKRN2 (ENSBIXG00005026143) #23 MKRN2OS (ENSBIXG00005026155) #25 ENSBIXG00005026465 #27 TIMP4 (ENSBIXG00005026516) #29 SYN2 (ENSBIXG00005026582) #28 RBSN (ENSBIXG00005026693) #7 MRPS25 (ENSBIXG00005026733) NR2C2 (ENSBIXG00005026766) FGD5 (ENSBIXG00005027347) C3orf20 (ENSBIXG00005027421) CCDC174 (ENSBIXG00005027454) ENSBIXG00005027475 ENSBIXG00005027488 GRIP2 (ENSBIXG00005027668) SLC6A6 (ENSBIXG00005027782) Cow MODERN SPECIES 14 SLC6A1 (ENSBTAG00000005857) #35 ATG7 (ENSBTAG00000035827) #33 VGLL4 (ENSBTAG00000018600) #32 TAMM41 (ENSBTAG00000003328) #30 TRH (ENSBTAG00000005306) #8 TMCC1 (ENSBTAG00000006614) #12 PLXND1 (ENSBTAG00000001814) #13 H1-8 (ENSBTAG00000001812) #14 RHO (ENSBTAG00000001310) #15 IFT122 (ENSBTAG00000019121) #16 MBD4 (ENSBTAG00000021645) #17 EFCAB12 (ENSBTAG00000021643) #18 RPL32 (ENSBTAG00000015283) ##19 CAND2 (ENSBTAG00000015273) #20 TMEM40 (ENSBTAG00000000161) #21 RAF1 (ENSBTAG00000045748) #22 MKRN2 (ENSBTAG00000004512) #23 MKRN2OS (ENSBTAG00000024991) #25 TSEN2 (ENSBTAG00000037980) #26 PPARG (ENSBTAG00000001333) #27 SYN2 (ENSBTAG00000020260) #28 TIMP4 (ENSBTAG00000020263) #29 ENSBTAG00000031115 #30 RBSN (ENSBTAG00000013725) #7 MRPS25 (ENSBTAG00000013723) NR2C2 (ENSBTAG00000013716) FGD5 (ENSBTAG00000006789) C22H3orf20 (ENSBTAG00000040133) CCDC174 (ENSBTAG00000038298) GRIP2 (ENSBTAG00000011896) SLC6A6 (ENSBTAG00000011088) American bison MODERN SPECIES 3340 ATG7 (ENSBBBG00000012188) #33 VGLL4 (ENSBBBG00000012100) #32 TAMM41 (ENSBBBG00000012063) #30 TRH (ENSBBBG00000012040) #8 ENSBBBG00000012036 TMCC1 (ENSBBBG00000012034) #12 ENSBBBG00000012012 ENSBBBG00000012007 RHO (ENSBBBG00000012003) #15 IFT122 (ENSBBBG00000002240) #16 MBD4 (ENSBBBG00000011698) #17 EFCAB12 (ENSBBBG00000011681) #18 RPL32 (ENSBBBG00000002148) ##19 CAND2 (ENSBBBG00000002144) #20 TMEM40 (ENSBBBG00000011569) #21 RAF1 (ENSBBBG00000011493) #22 MKRN2 (ENSBBBG00000011440) #23 MKRN2OS (ENSBBBG00000006934) #25 TSEN2 (ENSBBBG00000002087) #26 PPARG (ENSBBBG00000011336) #27 SYN2 (ENSBBBG00000011280) #28 TIMP4 (ENSBBBG00000011264) #29 RBSN (ENSBBBG00000011250) #7 MRPS25 (ENSBBBG00000011234) NR2C2 (ENSBBBG00000011226) C3orf20 (ENSBBBG00000011153) CCDC174 (ENSBBBG00000002003) GRIP2 (ENSBBBG00000011088) SLC6A6 (ENSBBBG00000010987) LSM3 (ENSBBBG00000007967) XPC (ENSBBBG00000001954) Siberian musk deer MODERN SPECIES 1221 NR2C2 (ENSMMSG00000024042) MRPS25 (ENSMMSG00000024052) RBSN (ENSMMSG00000024056) #7 TRH (ENSMMSG00000024061) #8 ENSMMSG00000024063 TMCC1 (ENSMMSG00000024064) #12 PLXND1 (ENSMMSG00000024073) #13 ENSMMSG00000024082 #14 RHO (ENSMMSG00000024086) #15 IFT122 (ENSMMSG00000024092) #16 MBD4 (ENSMMSG00000024114) #17 EFCAB12 (ENSMMSG00000024116) #18 RPL32 (ENSMMSG00000024124) ##19 CAND2 (ENSMMSG00000024132) #20 TMEM40 (ENSMMSG00000024144) #21 RAF1 (ENSMMSG00000024157) #22 MKRN2 (ENSMMSG00000014895) #23 MKRN2OS (ENSMMSG00000014926) #25 TSEN2 (ENSMMSG00000014963) #26 PPARG (ENSMMSG00000015004) #27 SYN2 (ENSMMSG00000015141) #28 TIMP4 (ENSMMSG00000015209) #29 TAMM41 (ENSMMSG00000015235) #30 VGLL4 (ENSMMSG00000015264) #32 ATG7 (ENSMMSG00000015338) #33 HRH1 (ENSMMSG00000015454) #34 SLC6A1 (ENSMMSG00000015486) #35 SLC6A11 (ENSMMSG00000015601) #36 ATP2B2 (ENSMMSG00000015764) #37 SEC13 (ENSMMSG00000018353) ENSMMSG00000018446 Yarkand deer MODERN SPECIES 16 VGLL4 (ENSCHYG00000017989) #32 TAMM41 (ENSCHYG00000017796) #30 TRH (ENSCHYG00000017738) #8 TMCC1 (ENSCHYG00000017484) #12 ENSCHYG00000017294 #13 H1-8 (ENSCHYG00000017241) #14 RHO (ENSCHYG00000017188) #15 IFT122 (ENSCHYG00000015047) #16 MBD4 (ENSCHYG00000014755) #17 EFCAB12 (ENSCHYG00000014606) #18 ENSCHYG00000014488 ##19 ENSCHYG00000014472 CAND2 (ENSCHYG00000014141) #20 TMEM40 (ENSCHYG00000013848) #21 ENSCHYG00000013805 RAF1 (ENSCHYG00000025496) #22 MKRN2 (ENSCHYG00000025428) #23 MKRN2OS (ENSCHYG00000025406) #25 TSEN2 (ENSCHYG00000025333) #26 PPARG (ENSCHYG00000025198) #27 TIMP4 (ENSCHYG00000025170) #29 ENSCHYG00000025128 #28 RBSN (ENSCHYG00000025089) #7 ENSCHYG00000025047 NR2C2 (ENSCHYG00000024864) FGD5 (ENSCHYG00000024639) C3orf20 (ENSCHYG00000024531) ENSCHYG00000024372 GRIP2 (ENSCHYG00000024067) SLC6A6 (ENSCHYG00000023942) LSM3 (ENSCHYG00000023916) Camelidae ANCESTRAL SPECIES 7 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00930000152979 ENSGT00940000175447 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00940000153393.B ENSGT00390000004064 Arabian camel MODERN SPECIES 8 MRPS25 (ENSCDRG00005003419) RBSN (ENSCDRG00005003390) #7 TRH (ENSCDRG00005003364) #8 TMCC1 (ENSCDRG00005018594) #12 PLXND1 (ENSCDRG00005018551) #13 ENSCDRG00005018533 #13 ENSCDRG00005018504 ENSCDRG00005018477 RHO (ENSCDRG00005018442) #15 IFT122 (ENSCDRG00005018267) #16 MBD4 (ENSCDRG00005018206) #17 EFCAB12 (ENSCDRG00005018119) #18 ENSCDRG00005018038 ##19 CAND2 (ENSCDRG00005017872) #20 TMEM40 (ENSCDRG00005017673) #21 RAF1 (ENSCDRG00005017576) #22 MKRN2 (ENSCDRG00005017406) #23 MKRN2OS (ENSCDRG00005017382) #25 TSEN2 (ENSCDRG00005017293) #26 PPARG (ENSCDRG00005017141) #27 TIMP4 (ENSCDRG00005017087) #29 SYN2 (ENSCDRG00005017059) #28 TAMM41 (ENSCDRG00005016988) #30 VGLL4 (ENSCDRG00005016647) #32 ATG7 (ENSCDRG00005016438) #33 HRH1 (ENSCDRG00005016405) #34 SLC6A1 (ENSCDRG00005016134) #35 SLC6A11 (ENSCDRG00005015983) #36 ATP2B2 (ENSCDRG00005015469) #37 SEC13 (ENSCDRG00005015206) GHRL (ENSCDRG00005015107) Alpaca MODERN SPECIES 1304 TMEM40 (ENSVPAG00000011071) #21 RAF1 (ENSVPAG00000011066) #22 MKRN2 (ENSVPAG00000011064) #23 ENSVPAG00000011061 #26 PPARG (ENSVPAG00000011059) #27 TIMP4 (ENSVPAG00000011058) #29 ENSVPAG00000011052 #28 Suina ANCESTRAL SPECIES 1 ENSGT00940000158393 ENSGT00640000091558 ENSGT00390000007159 #7 ENSGT00390000016951 #8 ENSGT00940000155189 #12 ENSGT01020000230394.e.b.a #13 ENSGT00940000160900 #14 ENSGT01030000234549.a.a.a.a.a.b.b #15 ENSGT00390000001016.b #16 ENSGT01010000229800 ENSGT00530000063687.a #17 ENSGT00390000014874 #18 ENSGT00940000153973.c.a.b.b ##19 ENSGT00390000017740.a.b #20 ENSGT00390000017530 #21 ENSGT00940000156084 #22 ENSGT00950000183077.a.b #23 ENSGT01030000235208 ENSGT00390000003839 #25 ENSGT00390000013266 #26 ENSGT00940000158273 #27 ENSGT00940000159798 #29 ENSGT00940000156062 #28 ENSGT00390000000616 #30 ENSGT00390000003282.B #32 ENSGT00390000017509 #33 ENSGT00940000160690 #34 ENSGT00940000156027 #35 ENSGT00940000157569 #36 ENSGT00940000161461 #37 ENSGT00910000147252 Chacoan peccary MODERN SPECIES 950 MRPS25 (ENSCWAG00000018966) RBSN (ENSCWAG00000018943) #7 TRH (ENSCWAG00000018918) #8 TMCC1 (ENSCWAG00000018870) #12 PLXND1 (ENSCWAG00000018660) #13 H1-8 (ENSCWAG00000018609) #14 RHO (ENSCWAG00000018568) #15 IFT122 (ENSCWAG00000018289) #16 ENSCWAG00000018255 ENSCWAG00000018236 #17 ENSCWAG00000018222 #17 EFCAB12 (ENSCWAG00000018153) #18 RPL32 (ENSCWAG00000018094) ##19 CAND2 (ENSCWAG00000018031) #20 TMEM40 (ENSCWAG00000017953) #21 RAF1 (ENSCWAG00000017888) #22 MKRN2 (ENSCWAG00000017797) #23 ENSCWAG00000017774 TSEN2 (ENSCWAG00000017441) #26 PPARG (ENSCWAG00000017057) #27 TIMP4 (ENSCWAG00000017007) #29 SYN2 (ENSCWAG00000016935) #28 TAMM41 (ENSCWAG00000016892) #30 ENSCWAG00000016872 VGLL4 (ENSCWAG00000016758) #32 ATG7 (ENSCWAG00000016602) #33 HRH1 (ENSCWAG00000016580) #34 SLC6A1 (ENSCWAG00000015592) #35 SLC6A11 (ENSCWAG00000015415) #36 ATP2B2 (ENSCWAG00000012003) #37 ENSCWAG00000011861 Pig MODERN SPECIES 4 RBSN (ENSSSCG00000036643) #7 TRH (ENSSSCG00000055507) #8 ENSSSCG00000044894 ENSSSCG00000040441 TMCC1 (ENSSSCG00000011593) #12 PLXND1 (ENSSSCG00000011592) #13 H1-8 (ENSSSCG00000011591) #14 RHO (ENSSSCG00000011590) #15 IFT122 (ENSSSCG00000011589) #16 MBD4 (ENSSSCG00000033303) #17 EFCAB12 (ENSSSCG00000011587) #18 RPL32 (ENSSSCG00000035811) #19 CAND2 (ENSSSCG00000011582) #20 TMEM40 (ENSSSCG00000011583) #21 ENSSSCG00000056163 RAF1 (ENSSSCG00000024453) #22 MKRN2 (ENSSSCG00000029877) #23 ENSSSCG00000045850 MKRN2OS (ENSSSCG00000011581) #25 TSEN2 (ENSSSCG00000011580) #26 PPARG (ENSSSCG00000011579) #27 TIMP4 (ENSSSCG00000033000) #29 SYN2 (ENSSSCG00000023225) #28 TAMM41 (ENSSSCG00000011578) #30 VGLL4 (ENSSSCG00000030581) #32 ATG7 (ENSSSCG00000011575) #33 HRH1 (ENSSSCG00000011576) #34 SLC6A1 (ENSSSCG00000011577) #35 SLC6A11 (ENSSSCG00000039850) #36 ATP2B2 (ENSSSCG00000023084) #37 SEC13 (ENSSSCG00000011572) Eulipotyphla ANCESTRAL SPECIES ENSGT00940000156084 #22 Hedgehog MODERN SPECIES 2892 RAF1 (ENSEEUG00000011360) #22 Common shrew MODERN SPECIES 2149 RAF1 (ENSSARG00000007569) #22