Rodentia_A ANCESTRAL SPECIES 22 ENSGT00390000006347.b #8 ENSGT00940000155401.h #9 ENSGT00940000156564 #10 ENSGT00940000168071 ENSGT00940000155360.B #11 ENSGT00940000162479 ENSGT00390000018090 ENSGT00940000157872 #14 ENSGT00940000157849 #16 ENSGT00940000157874 #17 ENSGT00940000154474.A ENSGT00940000157694 #18 ENSGT00940000154505.A #19 ENSGT00390000001101 #20 ENSGT00940000156905 #21 ENSGT00950000182899.B.a #22 ENSGT00940000154927 #23 ENSGT00530000063627.a #25 ENSGT00940000157453 #26 ENSGT00390000001394 #27 ENSGT00940000154652 #28 ENSGT01030000234579.B.b #29 ENSGT00940000159927 #30 ENSGT00940000160889 #31 ENSGT00940000161271 #32 ENSGT00390000016480 #33 ENSGT00940000157953 #34 ENSGT01000000214655 #35 ENSGT00950000182950.B #37 ENSGT00390000017146.b ENSGT00730000111351 Hystricomorpha ANCESTRAL SPECIES 25 ENSGT00390000000917 #7 ENSGT00390000006347.b #8 ENSGT00940000155401.h #9 ENSGT00940000156564 #10 ENSGT00940000168071 ENSGT00940000155360.B #11 ENSGT00940000162479 ENSGT00940000157872 #14 ENSGT00940000157849 #16 ENSGT00940000157874 #17 ENSGT00940000154474.A ENSGT00940000157694 #18 ENSGT00940000154505.A #19 ENSGT00390000001101.r #20 ENSGT00940000156905 #21 ENSGT00950000182899.B.a #22 ENSGT00940000154927 #23 ENSGT00530000063627.a #25 ENSGT00940000157453 #26 ENSGT00390000001394 #27 ENSGT00940000154652 #28 ENSGT01030000234579.B.b #29 ENSGT00940000159927 #30 ENSGT00940000160889 #31 ENSGT00940000161271 #32 ENSGT00390000016480 #33 ENSGT00940000157953 #34 ENSGT01000000214655 #35 ENSGT00950000182950.B #37 ENSGT00390000017146.b.h ENSGT00730000111351 Hystricomorpha_a ANCESTRAL SPECIES 21 ENSGT00390000000917 #7 ENSGT00390000006347.b #8 ENSGT00940000155401.h #9 ENSGT00940000156564 #10 ENSGT00940000168071 ENSGT00940000155360.B #11 ENSGT00510000049560 ENSGT00940000157872 #14 ENSGT00940000157849 #16 ENSGT00940000157874 #17 ENSGT00940000154474.A ENSGT00940000157694 #18 ENSGT00940000154505.A #19 ENSGT00390000001101.r #20 ENSGT00940000156905 #21 ENSGT00950000182899.B.a #22 ENSGT00940000154927 #23 ENSGT00530000063627.a #25 ENSGT00940000157453 #26 ENSGT00390000001394 #27 ENSGT00940000154652 #28 ENSGT01030000234579.B.b #29 ENSGT00940000159927 #30 ENSGT00940000160889 #31 ENSGT00940000161271 #32 ENSGT00390000016480 #33 ENSGT00940000157953 #34 ENSGT01000000214655 #35 ENSGT00950000182950.B #37 ENSGT00390000017146.b.h ENSGT00730000111351 Hystricomorpha_b ANCESTRAL SPECIES 44 ENSGT00390000000917 #7 ENSGT00390000006347.b #8 ENSGT00940000155401.h #9 ENSGT00940000156564 #10 ENSGT00940000168071 ENSGT00940000155360.B #11 ENSGT00510000049560 ENSGT00940000157872 #14 ENSGT00940000157849 #16 ENSGT00940000157874 #17 ENSGT00940000154474.A ENSGT00940000157694 #18 ENSGT00940000154505.A #19 ENSGT00390000001101.r #20 ENSGT00940000156905 #21 ENSGT00950000182899.B.a #22 ENSGT00940000154927 #23 ENSGT00530000063627.a #25 ENSGT00940000157453 #26 ENSGT00390000001394 #27 ENSGT00940000154652 #28 ENSGT01030000234579.B.b #29 ENSGT00940000159927 #30 ENSGT00940000160889 #31 ENSGT00940000161271 #32 ENSGT00390000016480 #33 ENSGT00940000157953 #34 ENSGT00950000182950.B #37 ENSGT00390000017146.b.h ENSGT00730000111351 Degu MODERN SPECIES 80 NAXD (ENSODEG00000008623) #7 CARS2 (ENSODEG00000008933) #8 ING1 (ENSODEG00000008422) #9 ENSODEG00000008348 #10 ARHGEF7 (ENSODEG00000009477) #11 ENSODEG00000009444 #12 ENSODEG00000019619 #13 TUBGCP3 (ENSODEG00000008609) #14 ENSODEG00000008533 #15 ATP11A (ENSODEG00000008675) #16 MCF2L (ENSODEG00000009412) #17 F10 (ENSODEG00000008696) #18 PROZ (ENSODEG00000009284) #19 PCID2 (ENSODEG00000007738) #20 CUL4A (ENSODEG00000007751) #21 LAMP1 (ENSODEG00000009126) #22 GRTP1 (ENSODEG00000007871) #23 ENSODEG00000008619 #24 ENSODEG00000007633 #25 DCUN1D2 (ENSODEG00000008899) #26 TMCO3 (ENSODEG00000009661) #27 ENSODEG00000009187 #28 ATP4B (ENSODEG00000007695) #29 GRK1 (ENSODEG00000007663) #30 TMEM255B (ENSODEG00000007605) #31 GAS6 (ENSODEG00000012335) #32 C13orf46 (ENSODEG00000007606) #33 RASA3 (ENSODEG00000008030) #34 ENSODEG00000008845 #35 ENSODEG00000019558 #36 CDC16 (ENSODEG00000008438) #37 Long-tailed chinchilla MODERN SPECIES 111 NAXD (ENSCLAG00000008979) #7 ING1 (ENSCLAG00000017685) #9 CARS2 (ENSCLAG00000010030) #8 ANKRD10 (ENSCLAG00000009950) #10 ENSCLAG00000015201 ARHGEF7 (ENSCLAG00000002159) #11 ENSCLAG00000001914 TUBGCP3 (ENSCLAG00000001848) #14 ATP11A (ENSCLAG00000006784) #16 MCF2L (ENSCLAG00000002098) #17 F7 (ENSCLAG00000004276) F10 (ENSCLAG00000004028) #18 PROZ (ENSCLAG00000002909) #19 PCID2 (ENSCLAG00000002752) #20 CUL4A (ENSCLAG00000002629) #21 LAMP1 (ENSCLAG00000003876) #22 GRTP1 (ENSCLAG00000003539) #23 ENSCLAG00000002749 #25 DCUN1D2 (ENSCLAG00000003327) #26 TMCO3 (ENSCLAG00000003648) #27 TFDP1 (ENSCLAG00000003535) #28 ATP4B (ENSCLAG00000003301) #29 GRK1 (ENSCLAG00000003146) #30 TMEM255B (ENSCLAG00000002978) #31 GAS6 (ENSCLAG00000002827) #32 ENSCLAG00000002436 #33 RASA3 (ENSCLAG00000006342) #34 CDC16 (ENSCLAG00000006234) #37 CHAMP1 (ENSCLAG00000017633) Guinea pig MODERN SPECIES 5 COL4A2 (ENSCPOG00000010611) RAB20 (ENSCPOG00000034193) NAXD (ENSCPOG00000019974) #7 CARS2 (ENSCPOG00000024839) #8 ING1 (ENSCPOG00000035111) #9 ANKRD10 (ENSCPOG00000032064) #10 ARHGEF7 (ENSCPOG00000010585) #11 TUBGCP3 (ENSCPOG00000027201) #14 ATP11A (ENSCPOG00000010539) #16 MCF2L (ENSCPOG00000025369) #17 F7 (ENSCPOG00000005296) F10 (ENSCPOG00000005297) #18 PROZ (ENSCPOG00000014204) #19 PCID2 (ENSCPOG00000014206) #20 CUL4A (ENSCPOG00000007488) #21 LAMP1 (ENSCPOG00000021441) #22 GRTP1 (ENSCPOG00000013842) #23 ENSCPOG00000014361 #25 DCUN1D2 (ENSCPOG00000014364) #26 TMCO3 (ENSCPOG00000006999) #27 TFDP1 (ENSCPOG00000013486) #28 ATP4B (ENSCPOG00000013488) #29 GRK1 (ENSCPOG00000013493) #30 TMEM255B (ENSCPOG00000001504) #31 GAS6 (ENSCPOG00000007335) #32 C13orf46 (ENSCPOG00000022842) #33 RASA3 (ENSCPOG00000007813) #34 ENSCPOG00000030796 #35 CDC16 (ENSCPOG00000005324) #37 UPF3A (ENSCPOG00000006824) ENSCPOG00000032917 Naked mole-rat female MODERN SPECIES 30 ENSHGLG00000001367 NSDHL (ENSHGLG00000034743) CETN2 (ENSHGLG00000000679) ENSHGLG00000034611 ENSHGLG00000041325 GABRQ (ENSHGLG00000000255) ENSHGLG00000000811 ENSHGLG00000042494 ENSHGLG00000033171 ENSHGLG00000002103 #17 ENSHGLG00000046767 F10 (ENSHGLG00000039136) #18 PROZ (ENSHGLG00000037291) #19 PCID2 (ENSHGLG00000003349) #20 CUL4A (ENSHGLG00000002538) #21 LAMP1 (ENSHGLG00000002376) #22 ENSHGLG00000002306 #23 ENSHGLG00000036527 DCUN1D2 (ENSHGLG00000004905) #26 TMCO3 (ENSHGLG00000003925) #27 TFDP1 (ENSHGLG00000003633) #28 ATP4B (ENSHGLG00000003223) #29 GRK1 (ENSHGLG00000002895) #30 TMEM255B (ENSHGLG00000002627) #31 GAS6 (ENSHGLG00000002481) #32 ENSHGLG00000038427 ENSHGLG00000002286 #33 RASA3 (ENSHGLG00000002110) #34 CFAP97D2 (ENSHGLG00000049782) #35 CDC16 (ENSHGLG00000001834) #37 ENSHGLG00000034132 Sciuridae ANCESTRAL SPECIES 46 ENSGT00940000161024 ENSGT00390000000917 #7 ENSGT00390000006347.b #8 ENSGT00940000155401.g ##9 ENSGT00940000156564 #10 ENSGT00940000155360.B #11 ENSGT00940000162479 ENSGT00390000018090 ENSGT00940000157872 #14 ENSGT00940000157849 #16 ENSGT00940000157874 #17 ENSGT00940000154474.A ENSGT00940000157694 #18 ENSGT00390000001101 #20 ENSGT00940000156905 #21 ENSGT00950000182899.B.a #22 ENSGT00940000154927 #23 ENSGT00530000063627.a #25 ENSGT00940000157453 #26 ENSGT00390000001394 #27 ENSGT00940000154652 #28 ENSGT01030000234579.B.b #29 ENSGT00940000159927 #30 ENSGT00940000160889 #31 ENSGT00940000161271 #32 ENSGT00390000016480 #33 ENSGT00940000157953 #34 ENSGT01000000214655 #35 ENSGT00950000182950.B #37 ENSGT00390000017146.b ENSGT00730000111351 Marmotini ANCESTRAL SPECIES 29 ENSGT00940000157678 ENSGT00940000157234 ENSGT00940000161024 ENSGT00390000000917 #7 ENSGT00390000006347.b #8 ENSGT00940000155401.g ##9 ENSGT00940000156564 #10 ENSGT00940000155360.B #11 ENSGT00940000157872 #14 ENSGT00940000157849 #16 ENSGT00940000157874 #17 ENSGT00940000154474.A ENSGT00940000157694 #18 ENSGT00390000001101 #20 ENSGT00940000156905 #21 ENSGT00950000182899.B.a #22 ENSGT00940000154927 #23 ENSGT00530000063627.a #25 ENSGT00940000157453 #26 ENSGT00390000001394 #27 ENSGT00940000154652 #28 ENSGT01030000234579.B.b #29 ENSGT00940000159927 #30 ENSGT00940000160889 #31 ENSGT00940000161271 #32 ENSGT00390000016480 #33 ENSGT00940000157953 #34 ENSGT00950000182950.B #37 ENSGT00390000017146.b ENSGT00730000111351 Alpin marmot MODERN SPECIES 13 RAB20 (ENSMMMG00000020082) NAXD (ENSMMMG00000020065) #7 CARS2 (ENSMMMG00000019885) #8 ENSMMMG00000019878 ##9 ENSMMMG00000019874 #10 ENSMMMG00000019872 #10 ARHGEF7 (ENSMMMG00000019817) #11 ENSMMMG00000019809 TUBGCP3 (ENSMMMG00000019793) #14 ATP11A (ENSMMMG00000019764) #16 MCF2L (ENSMMMG00000019681) #17 F7 (ENSMMMG00000019651) F10 (ENSMMMG00000019639) #18 PCID2 (ENSMMMG00000019625) #20 CUL4A (ENSMMMG00000014686) #21 LAMP1 (ENSMMMG00000014633) #22 GRTP1 (ENSMMMG00000014534) #23 ENSMMMG00000014528 #25 ENSMMMG00000014431 #26 TMCO3 (ENSMMMG00000014404) #27 TFDP1 (ENSMMMG00000014381) #28 ATP4B (ENSMMMG00000014370) #29 GRK1 (ENSMMMG00000014330) #30 TMEM255B (ENSMMMG00000014307) #31 GAS6 (ENSMMMG00000014286) #32 C13orf46 (ENSMMMG00000014275) #33 RASA3 (ENSMMMG00000014242) #34 CDC16 (ENSMMMG00000014221) #37 UPF3A (ENSMMMG00000014171) CHAMP1 (ENSMMMG00000014156) Marmotini_b ANCESTRAL SPECIES 39 ENSGT00940000157678 ENSGT00940000157234 ENSGT00940000161024 ENSGT00390000000917 #7 ENSGT00390000006347.b #8 ENSGT00940000155401.g ##9 ENSGT00940000156564 #10 ENSGT00940000155360.B #11 ENSGT00940000157872 #14 ENSGT00940000157849 #16 ENSGT00940000157874 #17 ENSGT00940000154474.A ENSGT00940000157694 #18 ENSGT00390000001101 #20 ENSGT00940000156905 #21 ENSGT00950000182899.B.a #22 ENSGT00940000154927 #23 ENSGT00530000063627.a #25 ENSGT00940000157453 #26 ENSGT00390000001394 #27 ENSGT00940000154652 #28 ENSGT01030000234579.B.b #29 ENSGT00940000159927 #30 ENSGT00940000160889 #31 ENSGT00940000161271 #32 Squirrel MODERN SPECIES 72 COL4A1 (ENSSTOG00000004254) COL4A2 (ENSSTOG00000026757) RAB20 (ENSSTOG00000008251) NAXD (ENSSTOG00000012153) #7 CARS2 (ENSSTOG00000012158) #8 ENSSTOG00000026920 ##9 ANKRD10 (ENSSTOG00000023244) #10 ARHGEF7 (ENSSTOG00000014578) #11 TUBGCP3 (ENSSTOG00000000803) #14 ATP11A (ENSSTOG00000000270) #16 MCF2L (ENSSTOG00000003498) #17 F7 (ENSSTOG00000025843) F10 (ENSSTOG00000020166) #18 PCID2 (ENSSTOG00000003919) #20 CUL4A (ENSSTOG00000003940) #21 LAMP1 (ENSSTOG00000003961) #22 GRTP1 (ENSSTOG00000003972) #23 ENSSTOG00000007972 #25 DCUN1D2 (ENSSTOG00000007978) #26 TMCO3 (ENSSTOG00000023226) #27 TFDP1 (ENSSTOG00000002592) #28 ATP4B (ENSSTOG00000013113) #29 GRK1 (ENSSTOG00000027210) #30 TMEM255B (ENSSTOG00000026508) #31 GAS6 (ENSSTOG00000020442) #32 Arctic ground squirrel MODERN SPECIES 649 ENSUPAG00010011925 TUBGCP3 (ENSUPAG00010011868) #14 ATP11A (ENSUPAG00010011811) #16 MCF2L (ENSUPAG00010011660) #17 F7 (ENSUPAG00010011625) F10 (ENSUPAG00010011613) #18 PCID2 (ENSUPAG00010011560) #20 CUL4A (ENSUPAG00010011517) #21 LAMP1 (ENSUPAG00010011509) #22 GRTP1 (ENSUPAG00010011479) #23 Eurasian red squirrel MODERN SPECIES 13 ING1 (ENSSVLG00005000309) #9 ENSSVLG00005000341 #10 ARHGEF7 (ENSSVLG00005000486) #11 SOX1 (ENSSVLG00005000621) ENSSVLG00005000637 ENSSVLG00005000688 #14 ENSSVLG00005000771 ATP11A (ENSSVLG00005000814) #16 MCF2L (ENSSVLG00005001241) #17 ENSSVLG00005001682 F7 (ENSSVLG00005001724) F10 (ENSSVLG00005001796) #18 PCID2 (ENSSVLG00005001897) #20 ENSSVLG00005001960 #21 ENSSVLG00005002003 LAMP1 (ENSSVLG00005002018) #22 GRTP1 (ENSSVLG00005002053) #23 ENSSVLG00005002088 #25 ENSSVLG00005002123 #26 TMCO3 (ENSSVLG00005002150) #27 ATP4B (ENSSVLG00005002190) #29 GRK1 (ENSSVLG00005002225) #30 TMEM255B (ENSSVLG00005002264) #31 GAS6 (ENSSVLG00005002307) #32 ENSSVLG00005002351 #33 RASA3 (ENSSVLG00005002398) #34 CFAP97D2 (ENSSVLG00005002430) #35 ENSSVLG00005002469 #37 ENSSVLG00005002544 #37 ENSSVLG00005002676 CHAMP1 (ENSSVLG00005002688)