Pecora	ANCESTRAL SPECIES	2	ENSGT00390000018360	ENSGT00500000045038	ENSGT00390000011497	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00910000146771	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36
Percora_a	ANCESTRAL SPECIES	1	ENSGT00500000045038	ENSGT00390000011497	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000154555.a.a.b #17	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00910000146771	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36
Bovidae	ANCESTRAL SPECIES	1	ENSGT00500000045038	ENSGT00390000011497	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000154555.a.a.b #17	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00910000146771	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36
Caprinae	ANCESTRAL SPECIES	2	ENSGT00500000045038	ENSGT00390000011497	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000003316.d.g.a.b.a.a #14	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000154555.a.a.b #17	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00910000146771	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36
Rambouillet Sheep	MODERN SPECIES		RPRD2 (ENSOARG00020008088) #7	TARS2 (ENSOARG00020008324) #8	ECM1 (ENSOARG00020008539) #9	ADAMTSL4 (ENSOARG00020008616) #10	MCL1 (ENSOARG00020008725) #11	ENSA (ENSOARG00020008758) #12	GOLPH3L (ENSOARG00020008878) #13	ENSOARG00020008922 #14	HORMAD1 (ENSOARG00020008996) #15	CTSS (ENSOARG00020009546) #16	ENSOARG00020009638 #17	CTSK (ENSOARG00020009669) #18	ARNT (ENSOARG00020009727) #19	ENSOARG00020011070 #20	CTXND2 (ENSOARG00020011105) #21	SETDB1 (ENSOARG00020011148) #22	CERS2 (ENSOARG00020011401) #23	ANXA9 (ENSOARG00020011475) #24	MINDY1 (ENSOARG00020011596) #25	PRUNE1 (ENSOARG00020011679) #26	BNIPL (ENSOARG00020011956) #27	C1orf56 (ENSOARG00020011990) #28	CDC42SE1 (ENSOARG00020012045) #29	MLLT11 (ENSOARG00020012089) #30	GABPB2 (ENSOARG00020012123) #31	SEMA6C (ENSOARG00020012397) #32	TNFAIP8L2 (ENSOARG00020013414) #33	LYSMD1 (ENSOARG00020013436) #34	SCNM1 (ENSOARG00020013488) #35	TMOD4 (ENSOARG00020013556) #36	VPS72 (ENSOARG00020013630) #37
Goat	MODERN SPECIES	22	RPRD2 (ENSCHIG00000023733) #7	TARS2 (ENSCHIG00000018559) #8	ECM1 (ENSCHIG00000010881) #9	ENSCHIG00000025006	ENSCHIG00000011166	ADAMTSL4 (ENSCHIG00000024595) #10	MCL1 (ENSCHIG00000027012) #11	ENSA (ENSCHIG00000011483) #12	ENSCHIG00000017930 #13	ENSCHIG00000006760 #14	HORMAD1 (ENSCHIG00000010871) #15	CTSS (ENSCHIG00000022768) #16	ENSCHIG00000012927 #17	CTSK (ENSCHIG00000011574) #18	ARNT (ENSCHIG00000012451) #19	SETDB1 (ENSCHIG00000010698) #22	CERS2 (ENSCHIG00000023499) #23	ANXA9 (ENSCHIG00000024087) #24	MINDY1 (ENSCHIG00000018101) #25	PRUNE1 (ENSCHIG00000011605) #26	BNIPL (ENSCHIG00000025222) #27	CDC42SE1 (ENSCHIG00000009064) #29	ENSCHIG00000010765	MLLT11 (ENSCHIG00000001570) #30	GABPB2 (ENSCHIG00000017762) #31	SEMA6C (ENSCHIG00000027158) #32	TNFAIP8L2 (ENSCHIG00000008444) #33	LYSMD1 (ENSCHIG00000025538) #34	SCNM1 (ENSCHIG00000014264) #35	TMOD4 (ENSCHIG00000023166) #36	VPS72 (ENSCHIG00000014800) #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00500000045038	ENSGT00390000011497	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000154555.a.a.b #17	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36	ENSGT00390000017503 #37
Bos	ANCESTRAL SPECIES		ENSGT00390000011497	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000154555.a.a.b #17	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36	ENSGT00390000017503 #37
Bos_a	ANCESTRAL SPECIES	47	ENSGT00390000011497	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000154555.a.a.b #17	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36	ENSGT00390000017503 #37
Wild yak	MODERN SPECIES	688	MRPS21 (ENSBMUG00000023447)	PRPF3 (ENSBMUG00000023465)	RPRD2 (ENSBMUG00000023488) #7	TARS2 (ENSBMUG00000023540) #8	ECM1 (ENSBMUG00000023627) #9	ADAMTSL4 (ENSBMUG00000023675) #10	MCL1 (ENSBMUG00000023701) #11	ENSA (ENSBMUG00000023727) #12	GOLPH3L (ENSBMUG00000023736) #13	HORMAD1 (ENSBMUG00000023788) #15	CTSS (ENSBMUG00000023817) #16	ENSBMUG00000023823 #17	CTSK (ENSBMUG00000023829) #18	ARNT (ENSBMUG00000023892) #19	CTXND2 (ENSBMUG00000023928) #21	SETDB1 (ENSBMUG00000023958) #22	CERS2 (ENSBMUG00000023975) #23	ANXA9 (ENSBMUG00000023991) #24	MINDY1 (ENSBMUG00000024003) #25	PRUNE1 (ENSBMUG00000024019) #26	BNIPL (ENSBMUG00000024035) #27	C1orf56 (ENSBMUG00000024042) #28	CDC42SE1 (ENSBMUG00000024051) #29	MLLT11 (ENSBMUG00000024057) #30	GABPB2 (ENSBMUG00000024085) #31	SEMA6C (ENSBMUG00000024160) #32	TNFAIP8L2 (ENSBMUG00000024178) #33	LYSMD1 (ENSBMUG00000024179) #34	SCNM1 (ENSBMUG00000024189) #35	TMOD4 (ENSBMUG00000024204) #36	VPS72 (ENSBMUG00000024221) #37
Domestic yak	MODERN SPECIES	22	ENSBGRG00000000401	RPRD2 (ENSBGRG00000000422) #7	ENSBGRG00000000495	TARS2 (ENSBGRG00000000557) #8	ECM1 (ENSBGRG00000000897) #9	ADAMTSL4 (ENSBGRG00000000934) #10	MCL1 (ENSBGRG00000000962) #11	ENSA (ENSBGRG00000001008) #12	ENSBGRG00000001073 #13	HORMAD1 (ENSBGRG00000001109) #15	ENSBGRG00000001219 #17	ENSBGRG00000001228 #17	CTSK (ENSBGRG00000001240) #18	ARNT (ENSBGRG00000001283) #19	CTXND2 (ENSBGRG00000001358) #21	SETDB1 (ENSBGRG00000001377) #22	CERS2 (ENSBGRG00000001419) #23	ANXA9 (ENSBGRG00000001440) #24	MINDY1 (ENSBGRG00000001466) #25	PRUNE1 (ENSBGRG00000001499) #26	BNIPL (ENSBGRG00000001530) #27	C1orf56 (ENSBGRG00000001556) #28	CDC42SE1 (ENSBGRG00000001575) #29	MLLT11 (ENSBGRG00000001584) #30	GABPB2 (ENSBGRG00000001610) #31	SEMA6C (ENSBGRG00000001699) #32	TNFAIP8L2 (ENSBGRG00000001735) #33	LYSMD1 (ENSBGRG00000001747) #34	SCNM1 (ENSBGRG00000001758) #35	TMOD4 (ENSBGRG00000001770) #36	VPS72 (ENSBGRG00000001785) #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00390000011497	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #7	ENSGT00940000161600 #8	ENSGT00390000006215 #9	ENSGT00940000161136 #10	ENSGT01090000260003.a.b.b.a.a.a.b.b.o #11	ENSGT00940000155413 #12	ENSGT00390000007153.a.b #13	ENSGT00390000018130.a.a.a #15	ENSGT00940000155176 #16	ENSGT00940000154555.a.a.b #17	ENSGT00940000157759 #18	ENSGT00940000157585 #19	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #28	ENSGT00940000160112 #29	ENSGT00390000009895 #30	ENSGT00940000156794 #31	ENSGT00940000158641 #32	ENSGT00390000003488.b #33	ENSGT00940000160002 #34	ENSGT00390000010811 #35	ENSGT00940000158734 #36	ENSGT00390000017503 #37
Cow	MODERN SPECIES	22	CIART (ENSBTAG00000021487)	MRPS21 (ENSBTAG00000024378)	PRPF3 (ENSBTAG00000013946)	RPRD2 (ENSBTAG00000014984) #7	TARS2 (ENSBTAG00000003799) #8	ECM1 (ENSBTAG00000003806) #9	ADAMTSL4 (ENSBTAG00000003604) #10	MCL1 (ENSBTAG00000015154) #11	ENSA (ENSBTAG00000007123) #12	GOLPH3L (ENSBTAG00000020357) #13	HORMAD1 (ENSBTAG00000002724) #15	CTSS (ENSBTAG00000017135) #16	ENSBTAG00000050340 #17	CTSK (ENSBTAG00000021035) #18	ARNT (ENSBTAG00000021037) #19	SETDB1 (ENSBTAG00000000098) #22	CERS2 (ENSBTAG00000000099) #23	ANXA9 (ENSBTAG00000015304) #24	MINDY1 (ENSBTAG00000015329) #25	PRUNE1 (ENSBTAG00000015336) #26	BNIPL (ENSBTAG00000015345) #27	C3H1orf56 (ENSBTAG00000015349) #28	MLLT11 (ENSBTAG00000015369) #30	GABPB2 (ENSBTAG00000015371) #31	SEMA6C (ENSBTAG00000007281) #32	TNFAIP8L2 (ENSBTAG00000020394) #33	LYSMD1 (ENSBTAG00000020395) #34	SCNM1 (ENSBTAG00000018070) #35	TMOD4 (ENSBTAG00000018071) #36	VPS72 (ENSBTAG00000018074) #37	PIP5K1A (ENSBTAG00000006099)
Hybrid Bos Indicus	MODERN SPECIES	22	CIART (ENSBIXG00005026269)	MRPS21 (ENSBIXG00005004483)	PRPF3 (ENSBIXG00005026388)	ENSBIXG00005026407	RPRD2 (ENSBIXG00005004524) #7	TARS2 (ENSBIXG00005007645) #8	ADAMTSL4 (ENSBIXG00005026752) #10	ENSBIXG00005026789 #11	ENSA (ENSBIXG00005026915) #12	GOLPH3L (ENSBIXG00005004612) #13	HORMAD1 (ENSBIXG00005027115) #15	ENSBIXG00005027168 #17	CTSK (ENSBIXG00005027189) #18	ARNT (ENSBIXG00005006942) #19	CTXND2 (ENSBIXG00005027316) #21	SETDB1 (ENSBIXG00005027385) #22	CERS2 (ENSBIXG00005027450) #23	ANXA9 (ENSBIXG00005007589) #24	MINDY1 (ENSBIXG00005027538) #25	PRUNE1 (ENSBIXG00005027606) #26	BNIPL (ENSBIXG00005027654) #27	C1orf56 (ENSBIXG00005027664) #28	CDC42SE1 (ENSBIXG00005027674) #29	MLLT11 (ENSBIXG00005004758) #30	GABPB2 (ENSBIXG00005027729) #31	SEMA6C (ENSBIXG00005027801) #32	TNFAIP8L2 (ENSBIXG00005027841) #33	LYSMD1 (ENSBIXG00005027861) #34	SCNM1 (ENSBIXG00005027892) #35	TMOD4 (ENSBIXG00005027928) #36	VPS72 (ENSBIXG00005027956) #37
American bison	MODERN SPECIES	3032	MRPS21 (ENSBBBG00000023564)	PRPF3 (ENSBBBG00000023595)	RPRD2 (ENSBBBG00000023635) #7	TARS2 (ENSBBBG00000023752) #8	ECM1 (ENSBBBG00000023801) #9	ADAMTSL4 (ENSBBBG00000008423) #10	MCL1 (ENSBBBG00000023859) #11	ENSA (ENSBBBG00000023921) #12	ENSBBBG00000023935 #13	HORMAD1 (ENSBBBG00000024026) #15	CTSS (ENSBBBG00000024064) #16	ENSBBBG00000006254 #17	CTSK (ENSBBBG00000006256) #18	ARNT (ENSBBBG00000024242) #19	CTXND2 (ENSBBBG00000006318) #21	SETDB1 (ENSBBBG00000006339) #22	CERS2 (ENSBBBG00000006357) #23	ANXA9 (ENSBBBG00000024438) #24	MINDY1 (ENSBBBG00000024479) #25	PRUNE1 (ENSBBBG00000000262) #26	BNIPL (ENSBBBG00000024535) #27	C1orf56 (ENSBBBG00000006397) #28	CDC42SE1 (ENSBBBG00000024557) #29
Siberian musk deer	MODERN SPECIES	247	PRPF3 (ENSMMSG00000020222)	RPRD2 (ENSMMSG00000020110) #7	TARS2 (ENSMMSG00000019987) #8	ECM1 (ENSMMSG00000019915) #9	ADAMTSL4 (ENSMMSG00000019809) #10	MCL1 (ENSMMSG00000019746) #11	ENSA (ENSMMSG00000019666) #12	ENSMMSG00000019621	ENSMMSG00000019604 #13	HORMAD1 (ENSMMSG00000019531) #15	CTSS (ENSMMSG00000019442) #16	ENSMMSG00000019418 #17	CTSK (ENSMMSG00000019381) #18	ARNT (ENSMMSG00000019310) #19	CTXND2 (ENSMMSG00000019290) #21	SETDB1 (ENSMMSG00000019191) #22	CERS2 (ENSMMSG00000019147) #23	ANXA9 (ENSMMSG00000019107) #24	MINDY1 (ENSMMSG00000019051) #25	PRUNE1 (ENSMMSG00000018956) #26	BNIPL (ENSMMSG00000018916) #27	C1orf56 (ENSMMSG00000018885) #28	ENSMMSG00000018858 #29	MLLT11 (ENSMMSG00000018852) #30	GABPB2 (ENSMMSG00000018775) #31	SEMA6C (ENSMMSG00000018695) #32	TNFAIP8L2 (ENSMMSG00000018650) #33	LYSMD1 (ENSMMSG00000018627) #34	SCNM1 (ENSMMSG00000018590) #35	TMOD4 (ENSMMSG00000018543) #36	VPS72 (ENSMMSG00000018503) #37
Yarkand deer	MODERN SPECIES	12	CIART (ENSCHYG00000012538)	ENSCHYG00000012484	PRPF3 (ENSCHYG00000012362)	RPRD2 (ENSCHYG00000012167) #7	TARS2 (ENSCHYG00000011458) #8	ECM1 (ENSCHYG00000011225) #9	ADAMTSL4 (ENSCHYG00000010890) #10	MCL1 (ENSCHYG00000010763) #11	ENSCHYG00000010464 #12	GOLPH3L (ENSCHYG00000010384) #13	HORMAD1 (ENSCHYG00000010140) #15	CTSS (ENSCHYG00000009944) #16	CTSK (ENSCHYG00000009848) #18	ARNT (ENSCHYG00000009373) #19	CTXND2 (ENSCHYG00000009233) #21	SETDB1 (ENSCHYG00000008840) #22	CERS2 (ENSCHYG00000008620) #23	ANXA9 (ENSCHYG00000008588) #24	MINDY1 (ENSCHYG00000008523) #25	PRUNE1 (ENSCHYG00000008341) #26	BNIPL (ENSCHYG00000008308) #27	C1orf56 (ENSCHYG00000008299) #28	CDC42SE1 (ENSCHYG00000008283) #29	ENSCHYG00000008272 #30	GABPB2 (ENSCHYG00000008209) #31	SEMA6C (ENSCHYG00000008002) #32	TNFAIP8L2 (ENSCHYG00000007962) #33	LYSMD1 (ENSCHYG00000007945) #34	SCNM1 (ENSCHYG00000007917) #35	TMOD4 (ENSCHYG00000007877) #36	ENSCHYG00000007817 #37