Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000157471 #22
Euteleostomi	ANCESTRAL SPECIES	595												ENSGT00940000158423	ENSGT00940000157203	ENSGT00390000002799	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23
Sarcopterygii	ANCESTRAL SPECIES	246																ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000165419	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00940000163785.a.a.b	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Tetrapoda	ANCESTRAL SPECIES	106	ENSGT00940000164936	ENSGT00390000018360	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Amniota	ANCESTRAL SPECIES	28	ENSGT00500000045038 #7	ENSGT00940000171776	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000154969.a	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Mammalia	ANCESTRAL SPECIES	25	ENSGT00940000164936	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703
Theria	ANCESTRAL SPECIES	3	ENSGT00390000002049.c.a	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Eutheria	ANCESTRAL SPECIES		ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Primates	ANCESTRAL SPECIES	7	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00500000045038.y.b #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a.g #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Gibbon	MODERN SPECIES	2	MRPS21 (ENSNLEG00000031023) #7	PRPF3 (ENSNLEG00000009841) #8	ENSNLEG00000029292 #9	TARS2 (ENSNLEG00000009858) #10	ECM1 (ENSNLEG00000009877) #11	ENSNLEG00000033454 #12	ADAMTSL4 (ENSNLEG00000009896) #13	MCL1 (ENSNLEG00000009922) #14	ENSNLEG00000009928 #15	GOLPH3L (ENSNLEG00000028540) #16	HORMAD1 (ENSNLEG00000009941) #17	CTSS (ENSNLEG00000009960) #18	CTSK (ENSNLEG00000033510) #19	ARNT (ENSNLEG00000009971) #20	CTXND2 (ENSNLEG00000035943) #21	SETDB1 (ENSNLEG00000009996) #22	CERS2 (ENSNLEG00000010014) #23	ANXA9 (ENSNLEG00000010032) #24	MINDY1 (ENSNLEG00000033005) #25	PRUNE1 (ENSNLEG00000010057) #26	BNIPL (ENSNLEG00000010065) #27	ENSNLEG00000027334 #28	C1orf56 (ENSNLEG00000010073) #29	CDC42SE1 (ENSNLEG00000031841) #30	ENSNLEG00000032141 #31	MLLT11 (ENSNLEG00000030296) #32	GABPB2 (ENSNLEG00000033310) #33	SEMA6C (ENSNLEG00000010093) #34	TNFAIP8L2 (ENSNLEG00000035422) #35	LYSMD1 (ENSNLEG00000032888) #36	SCNM1 (ENSNLEG00000010123) #37
Hominidae	ANCESTRAL SPECIES	6	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a.g #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a.g #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b.a	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a.g #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b.a	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00910000146771 #31	ENSGT00860000134665	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37
Pan	ANCESTRAL SPECIES		ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a.g #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b.a	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00860000134665	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Chimpanzee	MODERN SPECIES		PRPF3 (ENSPTRG00000001254) #8	RPRD2 (ENSPTRG00000001255) #9	TARS2 (ENSPTRG00000001256) #10	ECM1 (ENSPTRG00000001257) #11	ADAMTSL4 (ENSPTRG00000001258) #13	ENSPTRG00000040851 #12	MCL1 (ENSPTRG00000001260) #14	ENSA (ENSPTRG00000001261) #15	GOLPH3L (ENSPTRG00000001262) #16	HORMAD1 (ENSPTRG00000001263) #17	CTSS (ENSPTRG00000001264) #18	CTSK (ENSPTRG00000001265) #19	ARNT (ENSPTRG00000001266) #20	ENSPTRG00000044588	CTXND2 (ENSPTRG00000043902) #21	SETDB1 (ENSPTRG00000001267) #22	CERS2 (ENSPTRG00000001268) #23	ANXA9 (ENSPTRG00000001269) #24	MINDY1 (ENSPTRG00000001270) #25	PRUNE1 (ENSPTRG00000050821) #26	BNIPL (ENSPTRG00000001272) #27	C1H1orf56 (ENSPTRG00000001274) #29	CDC42SE1 (ENSPTRG00000023156) #30	ENSPTRG00000050883 #31	ENSPTRG00000049844	GABPB2 (ENSPTRG00000001275) #33	SEMA6C (ENSPTRG00000001276) #34	TNFAIP8L2 (ENSPTRG00000001277) #35	LYSMD1 (ENSPTRG00000001278) #36	SCNM1 (ENSPTRG00000001279) #37	TMOD4 (ENSPTRG00000001280)
Bonobo	MODERN SPECIES		PRPF3 (ENSPPAG00000030983) #8	RPRD2 (ENSPPAG00000028604) #9	TARS2 (ENSPPAG00000042011) #10	ECM1 (ENSPPAG00000031650) #11	ADAMTSL4 (ENSPPAG00000042395) #13	ENSPPAG00000034501 #12	MCL1 (ENSPPAG00000038714) #14	ENSPPAG00000001282 #15	GOLPH3L (ENSPPAG00000017189) #16	HORMAD1 (ENSPPAG00000006843) #17	CTSS (ENSPPAG00000030281) #18	CTSK (ENSPPAG00000041595) #19	ARNT (ENSPPAG00000040647) #20	ENSPPAG00000026470	CTXND2 (ENSPPAG00000024020) #21	SETDB1 (ENSPPAG00000041015) #22	CERS2 (ENSPPAG00000039698) #23	ANXA9 (ENSPPAG00000035171) #24	MINDY1 (ENSPPAG00000038839) #25	PRUNE1 (ENSPPAG00000033014) #26	ENSPPAG00000033368 #27	C1orf56 (ENSPPAG00000031132) #29	CDC42SE1 (ENSPPAG00000036728) #30	ENSPPAG00000023077 #31	ENSPPAG00000000610	GABPB2 (ENSPPAG00000012295) #33	SEMA6C (ENSPPAG00000038335) #34	TNFAIP8L2 (ENSPPAG00000021231) #35	LYSMD1 (ENSPPAG00000036493) #36	SCNM1 (ENSPPAG00000029574) #37	TMOD4 (ENSPPAG00000031353)
Human	MODERN SPECIES		CIART (ENSG00000159208)	MRPS21 (ENSG00000266472) #7	PRPF3 (ENSG00000117360) #8	RPRD2 (ENSG00000163125) #9	TARS2 (ENSG00000143374) #10	ECM1 (ENSG00000143369) #11	ADAMTSL4 (ENSG00000143382) #13	MCL1 (ENSG00000143384) #14	ENSA (ENSG00000143420) #15	GOLPH3L (ENSG00000143457) #16	HORMAD1 (ENSG00000143452) #17	CTSS (ENSG00000163131) #18	CTSK (ENSG00000143387) #19	ARNT (ENSG00000143437) #20	CTXND2 (ENSG00000283324) #21	SETDB1 (ENSG00000143379) #22	CERS2 (ENSG00000143418) #23	ANXA9 (ENSG00000143412) #24	MINDY1 (ENSG00000143409) #25	PRUNE1 (ENSG00000143363) #26	BNIPL (ENSG00000163141) #27	C1orf56 (ENSG00000143443) #29	CDC42SE1 (ENSG00000197622) #30	MLLT11 (ENSG00000213190) #32	GABPB2 (ENSG00000143458) #33	SEMA6C (ENSG00000143434) #34	TNFAIP8L2 (ENSG00000163154) #35	SCNM1 (ENSG00000163156) #37	LYSMD1 (ENSG00000163155) #36	TMOD4 (ENSG00000163157)	VPS72 (ENSG00000163159)
Gorilla	MODERN SPECIES		RPRD2 (ENSGGOG00000004818) #9	TARS2 (ENSGGOG00000006311) #10	ENSGGOG00000006323 #11	ENSGGOG00000041363 #11	ENSGGOG00000042298 #12	ADAMTSL4 (ENSGGOG00000016142) #13	MCL1 (ENSGGOG00000016154) #14	ENSGGOG00000023948 #15	GOLPH3L (ENSGGOG00000000869) #16	HORMAD1 (ENSGGOG00000004337) #17	ENSGGOG00000004909 #18	CTSK (ENSGGOG00000015378) #19	ARNT (ENSGGOG00000015383) #20	ENSGGOG00000023315	CTXND2 (ENSGGOG00000038429) #21	SETDB1 (ENSGGOG00000016308) #22	CERS2 (ENSGGOG00000011486) #23	ANXA9 (ENSGGOG00000005582) #24	MINDY1 (ENSGGOG00000001534) #25	ENSGGOG00000039222 #26	BNIPL (ENSGGOG00000008210) #27	C1orf56 (ENSGGOG00000023531) #29	CDC42SE1 (ENSGGOG00000008215) #30	ENSGGOG00000039380 #31	MLLT11 (ENSGGOG00000040228) #32	GABPB2 (ENSGGOG00000001029) #33	SEMA6C (ENSGGOG00000022199) #34	TNFAIP8L2 (ENSGGOG00000014042) #35	LYSMD1 (ENSGGOG00000014046) #36	SCNM1 (ENSGGOG00000003357) #37	TMOD4 (ENSGGOG00000024182)
Orangutan	MODERN SPECIES		CIART (ENSPPYG00000000903)	MRPS21 (ENSPPYG00000032712) #7	PRPF3 (ENSPPYG00000000900) #8	RPRD2 (ENSPPYG00000000899) #9	TARS2 (ENSPPYG00000000898) #10	ECM1 (ENSPPYG00000000897) #11	ADAMTSL4 (ENSPPYG00000000896) #13	MCL1 (ENSPPYG00000000894) #14	ENSPPYG00000000893 ##15	GOLPH3L (ENSPPYG00000000892) #16	HORMAD1 (ENSPPYG00000000891) #17	CTSS (ENSPPYG00000000890) #18	CTSK (ENSPPYG00000000889) #19	ARNT (ENSPPYG00000000888) #20	CTXND2 (ENSPPYG00000031784) #21	SETDB1 (ENSPPYG00000000887) #22	CERS2 (ENSPPYG00000000886) #23	ANXA9 (ENSPPYG00000000885) #24	MINDY1 (ENSPPYG00000000884) #25	PRUNE1 (ENSPPYG00000000883) #26	ENSPPYG00000000882 #27	C1orf56 (ENSPPYG00000000881) #29	CDC42SE1 (ENSPPYG00000030734) #30	MLLT11 (ENSPPYG00000000879)	GABPB2 (ENSPPYG00000000878) #33	SEMA6C (ENSPPYG00000000877) #34	LYSMD1 (ENSPPYG00000036209) #36	ENSPPYG00000000874 #37	TMOD4 (ENSPPYG00000034301)	VPS72 (ENSPPYG00000000873)	PIP5K1A (ENSPPYG00000000872)
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.l.a.a ##15	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038.y.b.b ##7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.l.b ##15	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038.y.b.b ##7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.l.b ##15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Macaca	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038.y.b.b ##7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.l.b ##15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038.y.b.b ##7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.l.b ##15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00860000134665	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Crab-eating macaque	MODERN SPECIES		C1orf54 (ENSMFAG00000002775)	CIART (ENSMFAG00000042429)	MRPS21 (ENSMFAG00000042375) ##7	PRPF3 (ENSMFAG00000039791) #8	RPRD2 (ENSMFAG00000002559) #9	TARS2 (ENSMFAG00000030387) #10	ECM1 (ENSMFAG00000040115) #11	ADAMTSL4 (ENSMFAG00000002869) #13	MCL1 (ENSMFAG00000042545) #14	ENSA (ENSMFAG00000001523) ##15	GOLPH3L (ENSMFAG00000042364) #16	HORMAD1 (ENSMFAG00000000795) #17	CTSS (ENSMFAG00000035464) #18	CTSK (ENSMFAG00000000402) #19	ARNT (ENSMFAG00000038379) #20	SETDB1 (ENSMFAG00000042328) #22	CERS2 (ENSMFAG00000038604) #23	ENSMFAG00000055601	PIP5K1A (ENSMFAG00000031399)	PSMD4 (ENSMFAG00000000623)	ZNF687 (ENSMFAG00000034438)	PI4KB (ENSMFAG00000004350)	RFX5 (ENSMFAG00000033452)	SELENBP1 (ENSMFAG00000033465)	PSMB4 (ENSMFAG00000033442)	ENSMFAG00000054881	POGZ (ENSMFAG00000043596)	ENSMFAG00000003431	TUFT1 (ENSMFAG00000034076)	SNX27 (ENSMFAG00000030490)	CELF3 (ENSMFAG00000040182)
Rhesus	MODERN SPECIES		CIART (ENSMMUG00000021388)	ENSMMUG00000049420	MRPS21 (ENSMMUG00000021391) ##7	ENSMMUG00000060724	PRPF3 (ENSMMUG00000016301) #8	RPRD2 (ENSMMUG00000007303) #9	TARS2 (ENSMMUG00000006256) #10	ECM1 (ENSMMUG00000006257) #11	ADAMTSL4 (ENSMMUG00000008218) #13	MCL1 (ENSMMUG00000053525) #14	ENSA (ENSMMUG00000012814) ##15	GOLPH3L (ENSMMUG00000010668) #16	HORMAD1 (ENSMMUG00000010669) #17	CTSS (ENSMMUG00000010670) #18	ARNT (ENSMMUG00000000541) #20	SETDB1 (ENSMMUG00000023235) #22	CERS2 (ENSMMUG00000023234) #23	ANXA9 (ENSMMUG00000023231) #24	MINDY1 (ENSMMUG00000010067) #25	PRUNE1 (ENSMMUG00000010068) #26	BNIPL (ENSMMUG00000010071) #27	C1H1orf56 (ENSMMUG00000010072) #29	CDC42SE1 (ENSMMUG00000010074) #30	MLLT11 (ENSMMUG00000010075)	GABPB2 (ENSMMUG00000008402) #33	SEMA6C (ENSMMUG00000007643) #34	TNFAIP8L2 (ENSMMUG00000007897) #35	LYSMD1 (ENSMMUG00000007898) #36	SCNM1 (ENSMMUG00000007900) #37	TMOD4 (ENSMMUG00000007903)	VPS72 (ENSMMUG00000007905)
Pig-tailed macaque	MODERN SPECIES	262	CIART (ENSMNEG00000040203)	ENSMNEG00000031239 ##7	PRPF3 (ENSMNEG00000038161) #8	RPRD2 (ENSMNEG00000028542) #9	TARS2 (ENSMNEG00000042066) #10	ECM1 (ENSMNEG00000015328) #11	ADAMTSL4 (ENSMNEG00000028307) #13	MCL1 (ENSMNEG00000045448) #14	ENSA (ENSMNEG00000031456) ##15	GOLPH3L (ENSMNEG00000008522) #16	HORMAD1 (ENSMNEG00000043307) #17	CTSS (ENSMNEG00000034738) #18	CTSK (ENSMNEG00000033034) #19	ARNT (ENSMNEG00000044100) #20	ENSMNEG00000005779	SETDB1 (ENSMNEG00000017223) #22	CERS2 (ENSMNEG00000042406) #23	ANXA9 (ENSMNEG00000000542) #24	MINDY1 (ENSMNEG00000041868) #25	PRUNE1 (ENSMNEG00000030962) #26	BNIPL (ENSMNEG00000037149) #27	C1orf56 (ENSMNEG00000037405) #29	CDC42SE1 (ENSMNEG00000041697) #30	ENSMNEG00000033578 #31	MLLT11 (ENSMNEG00000022771) #32	GABPB2 (ENSMNEG00000013770) #33	SEMA6C (ENSMNEG00000035534) #34	TNFAIP8L2 (ENSMNEG00000020572) #35	LYSMD1 (ENSMNEG00000029644) #36	SCNM1 (ENSMNEG00000026712) #37	TMOD4 (ENSMNEG00000041160)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000018360	ENSGT00500000045038.y.b.b ##7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00910000146771 #31	ENSGT00860000134665	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37
Olive baboon	MODERN SPECIES		C1orf54 (ENSPANG00000033401)	CIART (ENSPANG00000034379)	MRPS21 (ENSPANG00000030104) ##7	PRPF3 (ENSPANG00000000499) #8	RPRD2 (ENSPANG00000019137) #9	TARS2 (ENSPANG00000016774) #10	ECM1 (ENSPANG00000006364) #11	ADAMTSL4 (ENSPANG00000011009) #13	MCL1 (ENSPANG00000016574) #14	ENSA (ENSPANG00000021851) #15	GOLPH3L (ENSPANG00000036054) #16	HORMAD1 (ENSPANG00000009155) #17	CTSS (ENSPANG00000021581) #18	CTSK (ENSPANG00000009168) #19	ARNT (ENSPANG00000016773) #20	SETDB1 (ENSPANG00000020214) #22	CERS2 (ENSPANG00000012293) #23	ANXA9 (ENSPANG00000012518) #24	MINDY1 (ENSPANG00000015350) #25	PRUNE1 (ENSPANG00000011008) #26	BNIPL (ENSPANG00000005713) #27	C1orf56 (ENSPANG00000012292) #29	CDC42SE1 (ENSPANG00000022420) #30	MLLT11 (ENSPANG00000035992) #32	GABPB2 (ENSPANG00000015567) #33	SEMA6C (ENSPANG00000021850) #34	LYSMD1 (ENSPANG00000008738) #36	TMOD4 (ENSPANG00000000635)	VPS72 (ENSPANG00000000636)	PIP5K1A (ENSPANG00000015349)	PSMD4 (ENSPANG00000010190)
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT00390000003103	ENSGT00390000018360	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00860000134665	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Drill	MODERN SPECIES	411	C1orf54 (ENSMLEG00000007055)	CIART (ENSMLEG00000009773)	PRPF3 (ENSMLEG00000040609) #8	RPRD2 (ENSMLEG00000028436) #9	TARS2 (ENSMLEG00000030174) #10	ECM1 (ENSMLEG00000023846) #11	ADAMTSL4 (ENSMLEG00000041962) #13	MCL1 (ENSMLEG00000026079) #14	ENSA (ENSMLEG00000028446) #15	GOLPH3L (ENSMLEG00000042824) #16	HORMAD1 (ENSMLEG00000023333) #17	CTSS (ENSMLEG00000037846) #18	CTSK (ENSMLEG00000035690) #19	ARNT (ENSMLEG00000043783) #20	ENSMLEG00000027987	SETDB1 (ENSMLEG00000033050) #22	CERS2 (ENSMLEG00000037916) #23	ANXA9 (ENSMLEG00000038293) #24	MINDY1 (ENSMLEG00000013546) #25	PRUNE1 (ENSMLEG00000039523) #26	BNIPL (ENSMLEG00000043110) #27	C1orf56 (ENSMLEG00000037789) #29	CDC42SE1 (ENSMLEG00000014068) #30	ENSMLEG00000027133	GABPB2 (ENSMLEG00000043912) #33	ENSMLEG00000033840 #34	TNFAIP8L2 (ENSMLEG00000002703) #35	LYSMD1 (ENSMLEG00000036832) #36	SCNM1 (ENSMLEG00000018977) #37	TMOD4 (ENSMLEG00000044243)	VPS72 (ENSMLEG00000035130)
Sooty mangabey	MODERN SPECIES	153	APH1A (ENSCATG00000033983)	C1orf54 (ENSCATG00000033751)	CIART (ENSCATG00000032392)	PRPF3 (ENSCATG00000041778) #8	RPRD2 (ENSCATG00000033842) #9	TARS2 (ENSCATG00000034784) #10	ECM1 (ENSCATG00000033093) #11	ADAMTSL4 (ENSCATG00000043576) #13	MCL1 (ENSCATG00000032744) #14	ENSCATG00000032600 ##15	GOLPH3L (ENSCATG00000033915) #16	HORMAD1 (ENSCATG00000039929) #17	CTSS (ENSCATG00000036085) #18	CTSK (ENSCATG00000036086) #19	ARNT (ENSCATG00000041677) #20	SETDB1 (ENSCATG00000044888) #22	CERS2 (ENSCATG00000031279) #23	ANXA9 (ENSCATG00000034635) #24	MINDY1 (ENSCATG00000038845) #25	PRUNE1 (ENSCATG00000044946) #26	BNIPL (ENSCATG00000040526) #27	C1orf56 (ENSCATG00000029971) #29	CDC42SE1 (ENSCATG00000032396) #30	ENSCATG00000038418 #31	ENSCATG00000017037	GABPB2 (ENSCATG00000042751) #33	SEMA6C (ENSCATG00000042275) #34	TNFAIP8L2 (ENSCATG00000016739) #35	LYSMD1 (ENSCATG00000037386) #36	SCNM1 (ENSCATG00000042592) #37	TMOD4 (ENSCATG00000032370)
Vervet Monkey	MODERN SPECIES	179	CIART (ENSCSAG00000018088)	MRPS21 (ENSCSAG00000018085) ##7	ENSCSAG00000018084 #9	ENSCSAG00000018079 #9	TARS2 (ENSCSAG00000018075) #10	ECM1 (ENSCSAG00000018071) #11	ADAMTSL4 (ENSCSAG00000018068) #13	MCL1 (ENSCSAG00000018064) #14	ENSCSAG00000018061	ENSA (ENSCSAG00000018058) #15	GOLPH3L (ENSCSAG00000018055) #16	HORMAD1 (ENSCSAG00000018051) #17	CTSS (ENSCSAG00000018046) #18	CTSK (ENSCSAG00000018040) #19	ARNT (ENSCSAG00000018038) #20	SETDB1 (ENSCSAG00000018034) #22	CERS2 (ENSCSAG00000018030) #23	ANXA9 (ENSCSAG00000018026) #24	MINDY1 (ENSCSAG00000018023) #25	PRUNE1 (ENSCSAG00000018020) #26	BNIPL (ENSCSAG00000018015) #27	C1orf56 (ENSCSAG00000018010) #29
Rhinopithecus	ANCESTRAL SPECIES	23	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.l.a.a ##15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009405.a.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00860000134665	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Black snub-nosed monkey	MODERN SPECIES	590	CIART (ENSRBIG00000026376)	PRPF3 (ENSRBIG00000028854) #8	RPRD2 (ENSRBIG00000032833) #9	TARS2 (ENSRBIG00000044518) #10	ECM1 (ENSRBIG00000029889) #11	ADAMTSL4 (ENSRBIG00000044718) #13	MCL1 (ENSRBIG00000031092) #14	ENSRBIG00000027848 ##15	GOLPH3L (ENSRBIG00000033265) #16	HORMAD1 (ENSRBIG00000031865) #17	CTSS (ENSRBIG00000034911) #18	CTSK (ENSRBIG00000011955) #19	ARNT (ENSRBIG00000043770) #20	ENSRBIG00000015869	CTXND2 (ENSRBIG00000017453) #21	SETDB1 (ENSRBIG00000042359) #22	CERS2 (ENSRBIG00000029589) #23	ANXA9 (ENSRBIG00000006699) #24	MINDY1 (ENSRBIG00000041946) #25	PRUNE1 (ENSRBIG00000041012) #26	BNIPL (ENSRBIG00000007306) #27	C1orf56 (ENSRBIG00000041763) #29	CDC42SE1 (ENSRBIG00000036252) #30	GABPB2 (ENSRBIG00000035367) #33	SEMA6C (ENSRBIG00000041675) #34	TNFAIP8L2 (ENSRBIG00000002148) #35	LYSMD1 (ENSRBIG00000043593) #36	SCNM1 (ENSRBIG00000020166) #37	TMOD4 (ENSRBIG00000035077)	VPS72 (ENSRBIG00000027963)	PIP5K1A (ENSRBIG00000040874)
Golden snub-nosed monkey	MODERN SPECIES	2622	RPRD2 (ENSRROG00000044462) #9	TARS2 (ENSRROG00000030946) #10	ECM1 (ENSRROG00000030152) #11	ENSRROG00000044578 #12	ADAMTSL4 (ENSRROG00000035617) #13	MCL1 (ENSRROG00000033266) #14	ENSRROG00000034733 ##15	GOLPH3L (ENSRROG00000042636) #16	HORMAD1 (ENSRROG00000007880) #17	CTSS (ENSRROG00000039722) #18	CTSK (ENSRROG00000036101) #19	ARNT (ENSRROG00000032414) #20	ENSRROG00000010877	ENSRROG00000015516	CTXND2 (ENSRROG00000017486) #21	SETDB1 (ENSRROG00000032628) #22	CERS2 (ENSRROG00000010279) #23	ANXA9 (ENSRROG00000032772) #24	MINDY1 (ENSRROG00000037195) #25	PRUNE1 (ENSRROG00000037584) #26	BNIPL (ENSRROG00000034530) #27	C1orf56 (ENSRROG00000027918) #29	CDC42SE1 (ENSRROG00000045185) #30	ENSRROG00000013259	GABPB2 (ENSRROG00000035884) #33	SEMA6C (ENSRROG00000044266) #34	TNFAIP8L2 (ENSRROG00000027193) #35	LYSMD1 (ENSRROG00000042467) #36	SCNM1 (ENSRROG00000038049) #37	TMOD4 (ENSRROG00000040162)	VPS72 (ENSRROG00000026948)
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00500000045038.y.b #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Cebidae	ANCESTRAL SPECIES	12	ENSGT00500000045038.y.b #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00500000045038.y.b #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00910000147146 #12	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.e #14	ENSGT00940000155413.k.a #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703.e.a
Capuchin	MODERN SPECIES	188	PRPF3 (ENSCCAG00000026380) #8	RPRD2 (ENSCCAG00000032422) #9	TARS2 (ENSCCAG00000034305) #10	ECM1 (ENSCCAG00000026093) #11	ENSCCAG00000027383 #12	ADAMTSL4 (ENSCCAG00000026279) #13	MCL1 (ENSCCAG00000029442) #14	ENSCCAG00000029199 #15	GOLPH3L (ENSCCAG00000000006) #16	HORMAD1 (ENSCCAG00000028128) #17	CTSS (ENSCCAG00000021854) #18	CTSK (ENSCCAG00000029150) #19	ARNT (ENSCCAG00000029182) #20	ENSCCAG00000025398	CTXND2 (ENSCCAG00000006838) #21	SETDB1 (ENSCCAG00000024882) #22	CERS2 (ENSCCAG00000024890) #23	ANXA9 (ENSCCAG00000029485) #24	MINDY1 (ENSCCAG00000034264) #25	PRUNE1 (ENSCCAG00000032830) #26	BNIPL (ENSCCAG00000035594) #27	C1orf56 (ENSCCAG00000029248) #29	CDC42SE1 (ENSCCAG00000037855) #30	GABPB2 (ENSCCAG00000035213) #33	SEMA6C (ENSCCAG00000023670) #34	TNFAIP8L2 (ENSCCAG00000010675) #35	LYSMD1 (ENSCCAG00000000035) #36	SCNM1 (ENSCCAG00000034389) #37	TMOD4 (ENSCCAG00000031316)	VPS72 (ENSCCAG00000035387)	ENSCCAG00000028432
Bolivian squirrel monkey	MODERN SPECIES	194	MRPS21 (ENSSBOG00000000667) #7	PRPF3 (ENSSBOG00000033104) #8	RPRD2 (ENSSBOG00000020427) #9	TARS2 (ENSSBOG00000001108) #10	ECM1 (ENSSBOG00000031851) #11	ENSSBOG00000003745 #12	ADAMTSL4 (ENSSBOG00000028243) #13	MCL1 (ENSSBOG00000035804) #14	ENSA (ENSSBOG00000030145) #15	GOLPH3L (ENSSBOG00000035901) #16	HORMAD1 (ENSSBOG00000034042) #17	CTSS (ENSSBOG00000027502) #18	CTSK (ENSSBOG00000028605) #19	ARNT (ENSSBOG00000025839) #20	CTXND2 (ENSSBOG00000016796) #21	SETDB1 (ENSSBOG00000028608) #22	CERS2 (ENSSBOG00000033621) #23	ANXA9 (ENSSBOG00000017233) #24	MINDY1 (ENSSBOG00000035915) #25	PRUNE1 (ENSSBOG00000014294) #26	BNIPL (ENSSBOG00000029084) #27	C1orf56 (ENSSBOG00000025901) #29	CDC42SE1 (ENSSBOG00000035657) #30	GABPB2 (ENSSBOG00000029601) #33	SEMA6C (ENSSBOG00000024763) #34	TNFAIP8L2 (ENSSBOG00000004747) #35	LYSMD1 (ENSSBOG00000000350) #36	SCNM1 (ENSSBOG00000032405) #37	TMOD4 (ENSSBOG00000030865)	VPS72 (ENSSBOG00000033206)	ENSSBOG00000033201
Marmoset	MODERN SPECIES	9	MRPS21 (ENSCJAG00000041203) #7	PRPF3 (ENSCJAG00000009926) #8	RPRD2 (ENSCJAG00000006424) #9	MCL1 (ENSCJAG00000006605) #14	TARS2 (ENSCJAG00000006429) #10	ECM1 (ENSCJAG00000006499) #11	ADAMTSL4 (ENSCJAG00000006555) #13	ENSCJAG00000038289	ENSCJAG00000080548	ENSA (ENSCJAG00000046173) #15	GOLPH3L (ENSCJAG00000055606) #16	HORMAD1 (ENSCJAG00000006705) #17	CTSS (ENSCJAG00000006790) #18	CTSK (ENSCJAG00000006804) #19	ARNT (ENSCJAG00000006839) #20	SETDB1 (ENSCJAG00000006972) #22	CERS2 (ENSCJAG00000007043) #23	ANXA9 (ENSCJAG00000007078) #24	MINDY1 (ENSCJAG00000007100) #25	PRUNE1 (ENSCJAG00000007107) #26	BNIPL (ENSCJAG00000007115) #27	C1orf56 (ENSCJAG00000007125) #29	CDC42SE1 (ENSCJAG00000041056) #30	MLLT11 (ENSCJAG00000043847) #32	GABPB2 (ENSCJAG00000007146) #33	SEMA6C (ENSCJAG00000007159) #34	TNFAIP8L2 (ENSCJAG00000046203) #35	LYSMD1 (ENSCJAG00000045898) #36	SCNM1 (ENSCJAG00000007277) #37	TMOD4 (ENSCJAG00000007296)	VPS72 (ENSCJAG00000070474)
Mas night monkey	MODERN SPECIES	784	PRPF3 (ENSANAG00000026138) #8	RPRD2 (ENSANAG00000019468) #9	TARS2 (ENSANAG00000019620) #10	ECM1 (ENSANAG00000031765) #11	ADAMTSL4 (ENSANAG00000019112) #13	ENSANAG00000021748 #14	ENSANAG00000003718	ENSANAG00000029931 ##15	GOLPH3L (ENSANAG00000020389) #16	HORMAD1 (ENSANAG00000021070) #17	CTSS (ENSANAG00000027610) #18	CTSK (ENSANAG00000037073) #19	ARNT (ENSANAG00000021110) #20	ENSANAG00000035985	CTXND2 (ENSANAG00000007098) #21	SETDB1 (ENSANAG00000001819) #22	CERS2 (ENSANAG00000027061) #23	ANXA9 (ENSANAG00000037268) #24	MINDY1 (ENSANAG00000035903) #25	PRUNE1 (ENSANAG00000023005) #26	ENSANAG00000029347	BNIPL (ENSANAG00000034658) #27	C1orf56 (ENSANAG00000033953) #29	CDC42SE1 (ENSANAG00000034234) #30	GABPB2 (ENSANAG00000033560) #33	SEMA6C (ENSANAG00000030841) #34	TNFAIP8L2 (ENSANAG00000013726) #35	ENSANAG00000027900 #36	SCNM1 (ENSANAG00000021348) #37	TMOD4 (ENSANAG00000025034)	VPS72 (ENSANAG00000032435)
Tarsier	MODERN SPECIES	2293										ENSA (ENSTSYG00000029565) #15	GOLPH3L (ENSTSYG00000009078) #16	ENSTSYG00000006025 #17	CTSS (ENSTSYG00000000892) #18	CTSK (ENSTSYG00000006055) #19	ARNT (ENSTSYG00000006074) #20	SETDB1 (ENSTSYG00000012646) #22	ENSTSYG00000031523
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Mouse lemur	MODERN SPECIES	11	RPRD2 (ENSMICG00000007991) #9	TARS2 (ENSMICG00000008016) #10	ECM1 (ENSMICG00000044220) #11	ADAMTSL4 (ENSMICG00000008061) #13	MCL1 (ENSMICG00000034250) #14	ENSMICG00000029534	ENSA (ENSMICG00000004996) #15	GOLPH3L (ENSMICG00000027785) #16	HORMAD1 (ENSMICG00000036889) #17	ENSMICG00000027297	CTSS (ENSMICG00000032451) #18	CTSK (ENSMICG00000005853) #19	ARNT (ENSMICG00000005872) #20	ENSMICG00000034737	CTXND2 (ENSMICG00000044474) #21	SETDB1 (ENSMICG00000000425) #22	CERS2 (ENSMICG00000000441) #23	ANXA9 (ENSMICG00000000445) #24	MINDY1 (ENSMICG00000000449) #25	PRUNE1 (ENSMICG00000000451) #26	BNIPL (ENSMICG00000000460) #27	C1orf56 (ENSMICG00000000470) #29	CDC42SE1 (ENSMICG00000045944) #30	GABPB2 (ENSMICG00000006802) #33	SEMA6C (ENSMICG00000006866) #34	LYSMD1 (ENSMICG00000026636) #36	SCNM1 (ENSMICG00000047233) #37	TMOD4 (ENSMICG00000006822)	VPS72 (ENSMICG00000006827)	PIP5K1A (ENSMICG00000033339)	PSMD4 (ENSMICG00000016117)
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Coquerels sifaka	MODERN SPECIES	750	ENSPCOG00000023504 #7	PRPF3 (ENSPCOG00000013828) #8	ENSPCOG00000022424	RPRD2 (ENSPCOG00000015902) #9	TARS2 (ENSPCOG00000017247) #10	ECM1 (ENSPCOG00000027232) #11	ADAMTSL4 (ENSPCOG00000010721) #13	ENSPCOG00000025226 #14	ENSA (ENSPCOG00000015526) #15	GOLPH3L (ENSPCOG00000019149) #16	HORMAD1 (ENSPCOG00000026567) #17	CTSS (ENSPCOG00000015772) #18	CTSK (ENSPCOG00000022303) #19	ARNT (ENSPCOG00000028373) #20	CTXND2 (ENSPCOG00000010066) #21	SETDB1 (ENSPCOG00000027869) #22	CERS2 (ENSPCOG00000020561) #23	ANXA9 (ENSPCOG00000019416) #24	PRUNE1 (ENSPCOG00000028302) #26	BNIPL (ENSPCOG00000014517) #27	C1orf56 (ENSPCOG00000004934) #29	CDC42SE1 (ENSPCOG00000015975) #30	GABPB2 (ENSPCOG00000024488) #33	SEMA6C (ENSPCOG00000023729) #34	LYSMD1 (ENSPCOG00000015497) #36	SCNM1 (ENSPCOG00000004493) #37	TMOD4 (ENSPCOG00000019379)	VPS72 (ENSPCOG00000028469)	PIP5K1A (ENSPCOG00000010811)	PSMD4 (ENSPCOG00000027248)	ENSPCOG00000013223
Greater bamboo lemur	MODERN SPECIES	998		RPRD2 (ENSPSMG00000021029) #9	TARS2 (ENSPSMG00000021195) #10	ECM1 (ENSPSMG00000021284) #11	ADAMTSL4 (ENSPSMG00000021345) #13	ENSPSMG00000021413 #14	ENSPSMG00000021426	ENSA (ENSPSMG00000021455) #15	GOLPH3L (ENSPSMG00000021465) #16	ENSPSMG00000021475	HORMAD1 (ENSPSMG00000021500) #17	CTSS (ENSPSMG00000021523) #18	CTSK (ENSPSMG00000021532) #19	ARNT (ENSPSMG00000021753) #20	CTXND2 (ENSPSMG00000021975) #21	SETDB1 (ENSPSMG00000022003) #22	CERS2 (ENSPSMG00000022037) #23	ANXA9 (ENSPSMG00000022049) #24	MINDY1 (ENSPSMG00000022064) #25	PRUNE1 (ENSPSMG00000022096) #26	BNIPL (ENSPSMG00000022120) #27	C1orf56 (ENSPSMG00000022123) #29	CDC42SE1 (ENSPSMG00000022130) #30	MLLT11 (ENSPSMG00000022132) #32	GABPB2 (ENSPSMG00000022159) #33	SEMA6C (ENSPSMG00000022272) #34
Bushbaby	MODERN SPECIES	289	CIART (ENSOGAG00000004846)	PRPF3 (ENSOGAG00000005352) #8	ENSOGAG00000028162	RPRD2 (ENSOGAG00000029308) #9	TARS2 (ENSOGAG00000005360) #10	ECM1 (ENSOGAG00000005365) #11	ADAMTSL4 (ENSOGAG00000006696) #13	MCL1 (ENSOGAG00000016421) #14	ENSA (ENSOGAG00000005863) #15	GOLPH3L (ENSOGAG00000029017) #16	HORMAD1 (ENSOGAG00000005640) #17	CTSS (ENSOGAG00000014743) #18	CTSK (ENSOGAG00000004519) #19	ARNT (ENSOGAG00000004523) #20	ENSOGAG00000024502	SETDB1 (ENSOGAG00000010320) #22	CERS2 (ENSOGAG00000010325) #23	ANXA9 (ENSOGAG00000010336) #24	MINDY1 (ENSOGAG00000010340) #25	PRUNE1 (ENSOGAG00000010345) #26	BNIPL (ENSOGAG00000010350) #27	C1orf56 (ENSOGAG00000032399) #29	CDC42SE1 (ENSOGAG00000010356) #30	MLLT11 (ENSOGAG00000034023) #32	GABPB2 (ENSOGAG00000010359) #33	SEMA6C (ENSOGAG00000010363) #34	TNFAIP8L2 (ENSOGAG00000002842) #35	LYSMD1 (ENSOGAG00000002844) #36	SCNM1 (ENSOGAG00000032806) #37	TMOD4 (ENSOGAG00000006400)	VPS72 (ENSOGAG00000006403)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Glires	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Rodentia	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Muroidea	ANCESTRAL SPECIES	6	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038.u #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038.u #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Chinese hamster chok1gshd	MODERN SPECIES	66	Prpf3 (ENSCGRG00001019100) #8	Rprd2 (ENSCGRG00001021587) #9	Tars2 (ENSCGRG00001023517) #10	Ecm1 (ENSCGRG00001009335) #11	ENSCGRG00001003470	Adamtsl4 (ENSCGRG00001017255) #13	Mcl1 (ENSCGRG00001017446) #14	Ensa (ENSCGRG00001022170) #15	Golph3l (ENSCGRG00001000763) #16	Hormad1 (ENSCGRG00001016359) #17	Ctss (ENSCGRG00001009630) #18	Ctsk (ENSCGRG00001018122) #19	Arnt (ENSCGRG00001020065) #20	ENSCGRG00001022347	Ctxnd2 (ENSCGRG00001010032) #21	Setdb1 (ENSCGRG00001010822) #22	Cers2 (ENSCGRG00001014039) #23	Anxa9 (ENSCGRG00001018214) #24	Mindy1 (ENSCGRG00001015953) #25	Prune1 (ENSCGRG00001013833) #26	Bnipl (ENSCGRG00001024336) #27	Gm128 (ENSCGRG00001021721) #29	Cdc42se1 (ENSCGRG00001000423) #30	Mllt11 (ENSCGRG00001003537) #32	Gabpb2 (ENSCGRG00001013536) #33	Sema6c (ENSCGRG00001003943) #34	Tnfaip8l2 (ENSCGRG00001010397) #35	Lysmd1 (ENSCGRG00001007524) #36	Scnm1 (ENSCGRG00001006323) #37	Tmod4 (ENSCGRG00001019854)	Vps72 (ENSCGRG00001017696)
Golden Hamster	MODERN SPECIES	782	BC028528 (ENSMAUG00000009366)	ENSMAUG00000001664	ENSMAUG00000014535 #7	Prpf3 (ENSMAUG00000017112) #8	Rprd2 (ENSMAUG00000019875) #9	Tars2 (ENSMAUG00000008184) #10	Ecm1 (ENSMAUG00000016262) #11	Adamtsl4 (ENSMAUG00000014851) #13	Mcl1 (ENSMAUG00000007430) #14	Ensa (ENSMAUG00000008619) #15	Golph3l (ENSMAUG00000012523) #16	Hormad1 (ENSMAUG00000020053) #17	Ctss (ENSMAUG00000021301) #18	Ctsk (ENSMAUG00000019242) #19	ENSMAUG00000009522 #20	Setdb1 (ENSMAUG00000021391) #22	Cers2 (ENSMAUG00000015178) #23	Anxa9 (ENSMAUG00000021724) #24	Mindy1 (ENSMAUG00000020108) #25	Prune1 (ENSMAUG00000000710) #26	Bnipl (ENSMAUG00000008535) #27	ENSMAUG00000014653 #29	Cdc42se1 (ENSMAUG00000000575) #30	Mllt11 (ENSMAUG00000018228) #32	Gabpb2 (ENSMAUG00000015210) #33	Sema6c (ENSMAUG00000019207) #34	Tnfaip8l2 (ENSMAUG00000017288) #35	Lysmd1 (ENSMAUG00000019865) #36	Scnm1 (ENSMAUG00000021081) #37	Tmod4 (ENSMAUG00000016821)	Vps72 (ENSMAUG00000005849)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00390000018360	ENSGT00500000045038.u #7	ENSGT00500000045038.v.a.b #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Prairie vole	MODERN SPECIES	8	BC028528 (ENSMOCG00000003466)	Ciart (ENSMOCG00000020599)	ENSMOCG00000004675 #7	Prpf3 (ENSMOCG00000000242) #8	ENSMOCG00000013494 #9	Tars2 (ENSMOCG00000018432) #10	Ecm1 (ENSMOCG00000019294) #11	Adamtsl4 (ENSMOCG00000008356) #13	Mcl1 (ENSMOCG00000000395) #14	Ensa (ENSMOCG00000017464) #15	Golph3l (ENSMOCG00000018491) #16	Hormad1 (ENSMOCG00000018601) #17	Ctss (ENSMOCG00000022241) #18	Ctsk (ENSMOCG00000022513) #19	Arnt (ENSMOCG00000001627) #20	Setdb1 (ENSMOCG00000017407) #22	Cers2 (ENSMOCG00000001144) #23	Anxa9 (ENSMOCG00000000205) #24	Mindy1 (ENSMOCG00000021873) #25	Prune1 (ENSMOCG00000007764) #26	Bnipl (ENSMOCG00000013338) #27	Gm128 (ENSMOCG00000000577) #29	ENSMOCG00000018578 #30	Mllt11 (ENSMOCG00000019439) #32	Gabpb2 (ENSMOCG00000020822) #33	Sema6c (ENSMOCG00000015540) #34	Tnfaip8l2 (ENSMOCG00000020387) #35	Lysmd1 (ENSMOCG00000006887) #36	Scnm1 (ENSMOCG00000008260) #37	Tmod4 (ENSMOCG00000012934)	Vps72 (ENSMOCG00000013004)
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000013980 #7	ENSPEMG00000030510	Prpf3 (ENSPEMG00000011672) #8	ENSPEMG00000024405	Rprd2 (ENSPEMG00000013381) #9	Tars2 (ENSPEMG00000014203) #10	Ecm1 (ENSPEMG00000016753) #11	Adamtsl4 (ENSPEMG00000008970) #13	ENSPEMG00000031072 #14	Ensa (ENSPEMG00000024023) #15	Golph3l (ENSPEMG00000029486) #16	Hormad1 (ENSPEMG00000012403) #17	Ctss (ENSPEMG00000009697) #18	Ctsk (ENSPEMG00000001057) #19	Arnt (ENSPEMG00000029682) #20	Setdb1 (ENSPEMG00000010553) #22	Cers2 (ENSPEMG00000016044) #23	ENSPEMG00000030061	Anxa9 (ENSPEMG00000011713) #24	Mindy1 (ENSPEMG00000009924) #25	Prune1 (ENSPEMG00000028397) #26	Bnipl (ENSPEMG00000010539) #27	Gm128 (ENSPEMG00000024273) #29	Cdc42se1 (ENSPEMG00000029475) #30	Mllt11 (ENSPEMG00000030271) #32	Gabpb2 (ENSPEMG00000016588) #33	Sema6c (ENSPEMG00000024024) #34	Tnfaip8l2 (ENSPEMG00000017636) #35	Lysmd1 (ENSPEMG00000029321) #36	Scnm1 (ENSPEMG00000023042) #37	Tmod4 (ENSPEMG00000014116)
Murinae	ANCESTRAL SPECIES	5	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Mus	ANCESTRAL SPECIES	7	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.v #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.v #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Mus_C	ANCESTRAL SPECIES	6	ENSGT00500000045038.t #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.v #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000170759	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Steppe mouse	MODERN SPECIES	3111	Prpf3 (ENSMSIG00000007342) #8	Rprd2 (ENSMSIG00000007289) #9	Tars2 (ENSMSIG00000006741) #10	Ecm1 (ENSMSIG00000006669) #11	Adamtsl4 (ENSMSIG00000006628) #13	Mcl1 (ENSMSIG00000006604) #14	Ensa (ENSMSIG00000006584) #15	Golph3l (ENSMSIG00000006388) #16	ENSMSIG00000006052 #17	Ctss (ENSMSIG00000005997) #18	Ctsk (ENSMSIG00000005966) #19	Arnt (ENSMSIG00000005683) #20	ENSMSIG00000005664	ENSMSIG00000005661	Ctxnd2 (ENSMSIG00000005609) #21	Setdb1 (ENSMSIG00000005513) #22	Cers2 (ENSMSIG00000005476) #23	Anxa9 (ENSMSIG00000005379) #24	Mindy1 (ENSMSIG00000005316) #25	Prune1 (ENSMSIG00000005284) #26	Bnipl (ENSMSIG00000005186) #27	Gm128 (ENSMSIG00000005144) #29	Cdc42se1 (ENSMSIG00000005109) #30	Mllt11 (ENSMSIG00000005094) #32	Gabpb2 (ENSMSIG00000005022) #33	Sema6c (ENSMSIG00000004785) #34	Tnfaip8l2 (ENSMSIG00000004763) #35	Lysmd1 (ENSMSIG00000004745) #36	Scnm1 (ENSMSIG00000004699) #37	Tmod4 (ENSMSIG00000004640)	ENSMSIG00000004624
Mouse	MODERN SPECIES	12	Ciart (ENSMUSG00000038550)	Mrps21 (ENSMUSG00000054312) #7	Prpf3 (ENSMUSG00000015748) #8	Rprd2 (ENSMUSG00000028106) #9	Tars2 (ENSMUSG00000028107) #10	Ecm1 (ENSMUSG00000028108) #11	Adamtsl4 (ENSMUSG00000015850) #13	Mcl1 (ENSMUSG00000038612) #14	Ensa (ENSMUSG00000038619) #15	Golph3l (ENSMUSG00000046519) #16	Hormad1 (ENSMUSG00000028109) #17	Ctss (ENSMUSG00000038642) #18	Ctsk (ENSMUSG00000028111) #19	Arnt (ENSMUSG00000015522) #20	Ctxnd2 (ENSMUSG00000105734) #21	Setdb1 (ENSMUSG00000015697) #22	Cers2 (ENSMUSG00000015714) #23	Anxa9 (ENSMUSG00000015702) #24	Mindy1 (ENSMUSG00000038712) #25	Prune1 (ENSMUSG00000015711) #26	Bnipl (ENSMUSG00000028115) #27	Gm128 (ENSMUSG00000068860) #29	Cdc42se1 (ENSMUSG00000046722) #30	Mllt11 (ENSMUSG00000053192) #32	Gabpb2 (ENSMUSG00000038766) #33	Sema6c (ENSMUSG00000038777) #34	Tnfaip8l2 (ENSMUSG00000013707) #35	Lysmd1 (ENSMUSG00000053769) #36	Scnm1 (ENSMUSG00000092607) #37	Tmod4 (ENSMUSG00000005628)	Vps72 (ENSMUSG00000008958)
Ryukyu mouse	MODERN SPECIES	12	BC028528 (MGP_CAROLIEiJ_G0025357)	MGP_CAROLIEiJ_G0025356	Mrps21 (MGP_CAROLIEiJ_G0025355) #7	Prpf3 (MGP_CAROLIEiJ_G0025354) #8	Rprd2 (MGP_CAROLIEiJ_G0025353) #9	Tars2 (MGP_CAROLIEiJ_G0025352) #10	Ecm1 (MGP_CAROLIEiJ_G0025351) #11	Adamtsl4 (MGP_CAROLIEiJ_G0025350) #13	Mcl1 (MGP_CAROLIEiJ_G0025349) #14	Ensa (MGP_CAROLIEiJ_G0025348) #15	MGP_CAROLIEiJ_G0025347 ##16	Hormad1 (MGP_CAROLIEiJ_G0025346) #17	Ctss (MGP_CAROLIEiJ_G0025345) #18	Ctsk (MGP_CAROLIEiJ_G0025344) #19	Arnt (MGP_CAROLIEiJ_G0025343) #20	Setdb1 (MGP_CAROLIEiJ_G0025342) #22	Cers2 (MGP_CAROLIEiJ_G0025341) #23	Anxa9 (MGP_CAROLIEiJ_G0025340) #24	Mindy1 (MGP_CAROLIEiJ_G0025339) #25	Prune1 (MGP_CAROLIEiJ_G0025338) #26	Bnipl (MGP_CAROLIEiJ_G0025337) #27	Gm128 (MGP_CAROLIEiJ_G0025336) #29	Cdc42se1 (MGP_CAROLIEiJ_G0025335) #30	Mllt11 (MGP_CAROLIEiJ_G0025334) #32	MGP_CAROLIEiJ_G0025333 #33	Sema6c (MGP_CAROLIEiJ_G0025332) #34	Tnfaip8l2 (MGP_CAROLIEiJ_G0025331) #35	MGP_CAROLIEiJ_G0025330 #36	MGP_CAROLIEiJ_G0025329 #36	MGP_CAROLIEiJ_G0025328 #37	Tmod4 (MGP_CAROLIEiJ_G0025327)
Rat	MODERN SPECIES	11	C2H1orf54 (ENSRNOG00000059750)	Ciart (ENSRNOG00000042717)	Mrps21 (ENSRNOG00000024845) #7	Prpf3 (ENSRNOG00000025629) #8	Rprd2 (ENSRNOG00000054294) #9	Tars2 (ENSRNOG00000057194) #10	Ecm1 (ENSRNOG00000021166) #11	Adamtsl4 (ENSRNOG00000049385) #13	Mcl1 (ENSRNOG00000063678) #14	Ensa (ENSRNOG00000048617) #15	Golph3l (ENSRNOG00000047620) #16	Hormad1 (ENSRNOG00000021160) #17	Ctss (ENSRNOG00000021157) #18	Ctsk (ENSRNOG00000021155) #19	Arnt (ENSRNOG00000031174) #20	Setdb1 (ENSRNOG00000021143) #22	Cers2 (ENSRNOG00000021138) #23	Anxa9 (ENSRNOG00000021134) #24	Mindy1 (ENSRNOG00000021131) #25	Prune1 (ENSRNOG00000021120) #26	Bnipl (ENSRNOG00000021116) #27	C2h1orf56 (ENSRNOG00000021656) #29	Gabpb2 (ENSRNOG00000021105) #33	Sema6c (ENSRNOG00000021101) #34	Tnfaip8l2 (ENSRNOG00000021100) #35	Lysmd1 (ENSRNOG00000021099) #36	Scnm1 (ENSRNOG00000021092) #37	Tmod4 (ENSRNOG00000021088)	Vps72 (ENSRNOG00000021081)	Pip5k1a (ENSRNOG00000021068)	Psmd4 (ENSRNOG00000021042)
Upper Galilee mountains blind mole rat	MODERN SPECIES	593																Setdb1 (ENSNGAG00000020151) #22	Cers2 (ENSNGAG00000016719) #23	Anxa9 (ENSNGAG00000015153) #24	Mindy1 (ENSNGAG00000020364) #25	Prune1 (ENSNGAG00000019947) #26	Bnipl (ENSNGAG00000001458) #27	Gm128 (ENSNGAG00000015278) #29	Cdc42se1 (ENSNGAG00000010539) #30	Mllt11 (ENSNGAG00000002849) #32	ENSNGAG00000021741 #33	Sema6c (ENSNGAG00000020194) #34	Tnfaip8l2 (ENSNGAG00000011818) #35	Lysmd1 (ENSNGAG00000007843) #36	Scnm1 (ENSNGAG00000005774) #37	Tmod4 (ENSNGAG00000002605)	Vps72 (ENSNGAG00000022821)
Kangaroo rat	MODERN SPECIES	345	BC028528 (ENSDORG00000011695)	ENSDORG00000025269	Mrps21 (ENSDORG00000030111) #7	Prpf3 (ENSDORG00000008664) #8	Rprd2 (ENSDORG00000023813) #9	Tars2 (ENSDORG00000007569) #10	Ecm1 (ENSDORG00000007570) #11	Adamtsl4 (ENSDORG00000000397) #13	Mcl1 (ENSDORG00000011424) #14	Ensa (ENSDORG00000011425) #15	Golph3l (ENSDORG00000024987) #16	Hormad1 (ENSDORG00000008931) #17	Ctss (ENSDORG00000011000) #18	Ctsk (ENSDORG00000027450) #19	ENSDORG00000023883 #20	Setdb1 (ENSDORG00000006830) #22	Cers2 (ENSDORG00000006831) #23	Anxa9 (ENSDORG00000009615) #24	Mindy1 (ENSDORG00000007366) #25	Prune1 (ENSDORG00000007367) #26	Bnipl (ENSDORG00000007368) #27	ENSDORG00000026052 #29	Cdc42se1 (ENSDORG00000007370) #30	Mllt11 (ENSDORG00000030219) #32	Gabpb2 (ENSDORG00000005828) #33	Sema6c (ENSDORG00000015324) #34	Tnfaip8l2 (ENSDORG00000024206) #35	Lysmd1 (ENSDORG00000028528) #36	Scnm1 (ENSDORG00000010356) #37	Tmod4 (ENSDORG00000010358)	Vps72 (ENSDORG00000010360)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.q.b #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895.i.a #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000164936	ENSGT00500000045038.r #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.q.b #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895.i.a #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Marmotini_b	ANCESTRAL SPECIES	77	ENSGT00940000164936	ENSGT00500000045038.r #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.q.b #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895.i.a #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Squirrel	MODERN SPECIES	180	C1orf54 (ENSSTOG00000006055)	ENSSTOG00000024097	ENSSTOG00000019516 #7	PRPF3 (ENSSTOG00000001889) #8	RPRD2 (ENSSTOG00000001895) #9	TARS2 (ENSSTOG00000008311) #10	ECM1 (ENSSTOG00000008340) #11	ADAMTSL4 (ENSSTOG00000024198) #13	MCL1 (ENSSTOG00000027465) #14	ENSA (ENSSTOG00000002742) #15	GOLPH3L (ENSSTOG00000002747) #16	HORMAD1 (ENSSTOG00000002768) #17	CTSS (ENSSTOG00000021432) #18	CTSK (ENSSTOG00000013868) #19	ARNT (ENSSTOG00000013876) #20	SETDB1 (ENSSTOG00000006770) #22	CERS2 (ENSSTOG00000006797) #23	ANXA9 (ENSSTOG00000006824) #24	MINDY1 (ENSSTOG00000006840) #25	PRUNE1 (ENSSTOG00000006879) #26	BNIPL (ENSSTOG00000006902) #27	ENSSTOG00000021284 #29	CDC42SE1 (ENSSTOG00000032349) #30	ENSSTOG00000026549 #32	SEMA6C (ENSSTOG00000000573) #34	GABPB2 (ENSSTOG00000000567) #33	TNFAIP8L2 (ENSSTOG00000000585) #35	LYSMD1 (ENSSTOG00000000588) #36	SCNM1 (ENSSTOG00000000590) #37	TMOD4 (ENSSTOG00000000592)	VPS72 (ENSSTOG00000025406)
Arctic ground squirrel	MODERN SPECIES	298	APH1A (ENSUPAG00010001823)	C1orf54 (ENSUPAG00010001839)	CIART (ENSUPAG00010001847)	PRPF3 (ENSUPAG00010001860) #8	RPRD2 (ENSUPAG00010001879) #9	TARS2 (ENSUPAG00010001943) #10	ECM1 (ENSUPAG00010002264) #11	ADAMTSL4 (ENSUPAG00010002294) #13	MCL1 (ENSUPAG00010002404) #14	ENSA (ENSUPAG00010002412) #15	HORMAD1 (ENSUPAG00010002435) #17	CTSS (ENSUPAG00010002451) #18	CTSK (ENSUPAG00010002778) #19	ARNT (ENSUPAG00010002789) #20	CTXND2 (ENSUPAG00010002982) #21	SETDB1 (ENSUPAG00010002991) #22	CERS2 (ENSUPAG00010003717) #23	ANXA9 (ENSUPAG00010003775) #24	MINDY1 (ENSUPAG00010003812) #25	PRUNE1 (ENSUPAG00010003831) #26	BNIPL (ENSUPAG00010003858) #27	C1orf56 (ENSUPAG00010003917) #29	CDC42SE1 (ENSUPAG00010003923) #30	ENSUPAG00010003938 #32	GABPB2 (ENSUPAG00010003948) #33	SEMA6C (ENSUPAG00010003983) #34	TNFAIP8L2 (ENSUPAG00010004011) #35	ENSUPAG00010004016 #36	SCNM1 (ENSUPAG00010004024) #37	TMOD4 (ENSUPAG00010004052)	VPS72 (ENSUPAG00010004077)
Alpin marmot	MODERN SPECIES	85	APH1A (ENSMMMG00000019524)	C1orf54 (ENSMMMG00000019516)	CIART (ENSMMMG00000019509)	PRPF3 (ENSMMMG00000019495) #8	RPRD2 (ENSMMMG00000019468) #9	TARS2 (ENSMMMG00000019396) #10	ECM1 (ENSMMMG00000019374) #11	ADAMTSL4 (ENSMMMG00000019345) #13	ENSMMMG00000019337 #15	GOLPH3L (ENSMMMG00000019322) #16	HORMAD1 (ENSMMMG00000019288) #17	CTSS (ENSMMMG00000019262) #18	CTSK (ENSMMMG00000019259) #19	ARNT (ENSMMMG00000019205) #20	CTXND2 (ENSMMMG00000019184) #21	SETDB1 (ENSMMMG00000019144) #22	CERS2 (ENSMMMG00000019137) #23	ANXA9 (ENSMMMG00000019113) #24	MINDY1 (ENSMMMG00000019104) #25	PRUNE1 (ENSMMMG00000019091) #26	BNIPL (ENSMMMG00000019067) #27	C1orf56 (ENSMMMG00000019063) #29	CDC42SE1 (ENSMMMG00000019055) #30	ENSMMMG00000019054 #32	GABPB2 (ENSMMMG00000019037) #33	SEMA6C (ENSMMMG00000018987) #34	TNFAIP8L2 (ENSMMMG00000018952) #35	LYSMD1 (ENSMMMG00000018943) #36	SCNM1 (ENSMMMG00000018931) #37	TMOD4 (ENSMMMG00000018917)	VPS72 (ENSMMMG00000018907)
Eurasian red squirrel	MODERN SPECIES		PRPF3 (ENSSVLG00005001025) #8	RPRD2 (ENSSVLG00005001061) #9	TARS2 (ENSSVLG00005001101) #10	ECM1 (ENSSVLG00005001143) #11	ADAMTSL4 (ENSSVLG00005001195) #13	MCL1 (ENSSVLG00005001232) #14	ENSSVLG00005001308 #15	ENSSVLG00005001356	GOLPH3L (ENSSVLG00005001367) #16	HORMAD1 (ENSSVLG00005001438) #17	ENSSVLG00005001503	CTSS (ENSSVLG00005001527) #18	CTSK (ENSSVLG00005001562) #19	ARNT (ENSSVLG00005001590) #20	CTXND2 (ENSSVLG00005001652) #21	SETDB1 (ENSSVLG00005001698) #22	CERS2 (ENSSVLG00005001737) #23	ANXA9 (ENSSVLG00005001768) #24	MINDY1 (ENSSVLG00005001783) #25	ENSSVLG00005001812 #26	BNIPL (ENSSVLG00005001858) #27	C1orf56 (ENSSVLG00005001885) #29	CDC42SE1 (ENSSVLG00005001905) #30	ENSSVLG00005001925 #32	ENSSVLG00005001950 #33	SEMA6C (ENSSVLG00005001999) #34	TNFAIP8L2 (ENSSVLG00005002031) #35	LYSMD1 (ENSSVLG00005002044) #36	SCNM1 (ENSSVLG00005002067) #37	TMOD4 (ENSSVLG00005002090)	VPS72 (ENSSVLG00005002112)
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Hystricomorpha_a	ANCESTRAL SPECIES	59	ENSGT00390000003103	ENSGT00940000164936	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Hystricomorpha_b	ANCESTRAL SPECIES	79	ENSGT00390000003103	ENSGT00940000164936	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00900000143229	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Long-tailed chinchilla	MODERN SPECIES	295													CTSK (ENSCLAG00000000173) #19	ARNT (ENSCLAG00000000889) #20	ENSCLAG00000000457 #32	SETDB1 (ENSCLAG00000000242) #22	CERS2 (ENSCLAG00000000260) #23	ANXA9 (ENSCLAG00000000291) #24	MINDY1 (ENSCLAG00000000123) #25	PRUNE1 (ENSCLAG00000000177) #26	BNIPL (ENSCLAG00000000367) #27	C1orf56 (ENSCLAG00000000381) #29	CDC42SE1 (ENSCLAG00000001637) #30	ENSCLAG00000001683 #32	GABPB2 (ENSCLAG00000001712) #33	SEMA6C (ENSCLAG00000001760) #34	TNFAIP8L2 (ENSCLAG00000000171) #35	LYSMD1 (ENSCLAG00000000193) #36	TMOD4 (ENSCLAG00000000301)	SCNM1 (ENSCLAG00000000328) #37	VPS72 (ENSCLAG00000000394)
Degu	MODERN SPECIES	89	ENSODEG00000013089	ENSODEG00000011678 #7	ENSODEG00000011363 #8	RPRD2 (ENSODEG00000012617) #9	TARS2 (ENSODEG00000011883) #10	ECM1 (ENSODEG00000011744) #11	ENSODEG00000013487 #13	ENSODEG00000011170 #15	GOLPH3L (ENSODEG00000011029) #16	HORMAD1 (ENSODEG00000012417) #17	CTSS (ENSODEG00000010580) #18	ENSODEG00000012573 #19	ENSODEG00000011559 #20	ENSODEG00000012445	ENSODEG00000012710	SETDB1 (ENSODEG00000012471) #22	CERS2 (ENSODEG00000012022) #23	ANXA9 (ENSODEG00000011014) #24	MINDY1 (ENSODEG00000010980) #25	PRUNE1 (ENSODEG00000010818) #26	BNIPL (ENSODEG00000011106) #27	C1orf56 (ENSODEG00000010338) #29	CDC42SE1 (ENSODEG00000010472) #30	ENSODEG00000012396 #32	GABPB2 (ENSODEG00000010710) #33	SEMA6C (ENSODEG00000011548) #34	TNFAIP8L2 (ENSODEG00000011478) #35	LYSMD1 (ENSODEG00000011246) #36	SCNM1 (ENSODEG00000013925) #37	TMOD4 (ENSODEG00000014977)	ENSODEG00000010899
Guinea pig	MODERN SPECIES	2	C1orf54 (ENSCPOG00000026169)	ENSCPOG00000035575	MRPS21 (ENSCPOG00000020443) #7	PRPF3 (ENSCPOG00000008068) #8	RPRD2 (ENSCPOG00000040179) #9	ENSCPOG00000010586 #10	ECM1 (ENSCPOG00000010599) #11	ADAMTSL4 (ENSCPOG00000011954) #13	MCL1 (ENSCPOG00000040407) #14	ENSA (ENSCPOG00000033807) #15	GOLPH3L (ENSCPOG00000005605) #16	HORMAD1 (ENSCPOG00000006235) #17	CTSS (ENSCPOG00000010629) #18	CTSK (ENSCPOG00000023854) #19	Arnt (ENSCPOG00000014578) #20	SETDB1 (ENSCPOG00000001632) #22	CERS2 (ENSCPOG00000001637) #23	ANXA9 (ENSCPOG00000001639) #24	MINDY1 (ENSCPOG00000001640) #25	PRUNE1 (ENSCPOG00000001641) #26	BNIPL (ENSCPOG00000026618) #27	C1orf56 (ENSCPOG00000025771) #29	CDC42SE1 (ENSCPOG00000036299) #30	MLLT11 (ENSCPOG00000036668) #32	GABPB2 (ENSCPOG00000011789) #33	SEMA6C (ENSCPOG00000002176) #34	TNFAIP8L2 (ENSCPOG00000034011) #35	LYSMD1 (ENSCPOG00000036409) #36	SCNM1 (ENSCPOG00000002184) #37	TMOD4 (ENSCPOG00000037550)	VPS72 (ENSCPOG00000019331)
Naked mole-rat female	MODERN SPECIES	10	GOLPH3L (ENSHGLG00000042052) #16	HORMAD1 (ENSHGLG00000013087) #17	ENSHGLG00000038892 #18	ENSHGLG00000041980	ENSHGLG00000018535	HMGCS2 (ENSHGLG00000016719)	ENSHGLG00000016686	ENSHGLG00000032256	ENSHGLG00000046834	ENSHGLG00000036245	ENSHGLG00000041981	ENSHGLG00000011085 #19	ARNT (ENSHGLG00000005864) #20	ENSHGLG00000040159	CTXND2 (ENSHGLG00000046081) #21	SETDB1 (ENSHGLG00000011098) #22	CERS2 (ENSHGLG00000010168) #23	ENSHGLG00000012738 #24	MINDY1 (ENSHGLG00000011645) #25	PRUNE1 (ENSHGLG00000009857) #26	BNIPL (ENSHGLG00000008894) #27	CDC42SE1 (ENSHGLG00000007587) #30	ENSHGLG00000006929 #32	ENSHGLG00000033273	ENSHGLG00000005117 #33	SEMA6C (ENSHGLG00000007351) #34	TNFAIP8L2 (ENSHGLG00000005573) #35	LYSMD1 (ENSHGLG00000005177) #36	SCNM1 (ENSHGLG00000005098) #37	TMOD4 (ENSHGLG00000010575)	VPS72 (ENSHGLG00000009189)
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Rabbit	MODERN SPECIES	4	CIART (ENSOCUG00000009044)	ENSOCUG00000027120 #7	PRPF3 (ENSOCUG00000011760) #8	RPRD2 (ENSOCUG00000011770) #9	TARS2 (ENSOCUG00000031561) #10	ECM1 (ENSOCUG00000011786) #11	ADAMTSL4 (ENSOCUG00000000927) #13	MCL1 (ENSOCUG00000012152) #14	ENSOCUG00000003267 #15	GOLPH3L (ENSOCUG00000032306) #16	HORMAD1 (ENSOCUG00000003275) #17	CTSS (ENSOCUG00000011085) #18	CTSK (ENSOCUG00000011090) #19	ARNT (ENSOCUG00000013582) #20	CTXND2 (ENSOCUG00000030922) #21	SETDB1 (ENSOCUG00000003642) #22	CERS2 (ENSOCUG00000022419) #23	ANXA9 (ENSOCUG00000014955) #24	MINDY1 (ENSOCUG00000004694) #25	PRUNE1 (ENSOCUG00000004699) #26	BNIPL (ENSOCUG00000004704) #27	C1orf56 (ENSOCUG00000004709) #29	CDC42SE1 (ENSOCUG00000024314) #30	MLLT11 (ENSOCUG00000004821) #32	GABPB2 (ENSOCUG00000004712) #33	SEMA6C (ENSOCUG00000002736) #34	TNFAIP8L2 (ENSOCUG00000004719) #35	LYSMD1 (ENSOCUG00000004722) #36	SCNM1 (ENSOCUG00000026766) #37	TMOD4 (ENSOCUG00000020919)	VPS72 (ENSOCUG00000021424)
Pika	MODERN SPECIES	10062																SETDB1 (ENSOPRG00000015349) #22
Tree shrew	MODERN SPECIES	2122																SETDB1 (ENSTBEG00000009306) #22	CERS2 (ENSTBEG00000001240) #23	ANXA9 (ENSTBEG00000001691) #24	MINDY1 (ENSTBEG00000002408) #25	ENSTBEG00000004483 #26	BNIPL (ENSTBEG00000004916) #27	C1orf56 (ENSTBEG00000005461) #29	CDC42SE1 (ENSTBEG00000006266) #30	GABPB2 (ENSTBEG00000006499) #33	LYSMD1 (ENSTBEG00000006976) #36
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Suina	ANCESTRAL SPECIES	8	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Pig	MODERN SPECIES	12	ENSSSCG00000052263 #7	PRPF3 (ENSSSCG00000030119) #8	RPRD2 (ENSSSCG00000030291) #9	TARS2 (ENSSSCG00000026395) #10	ECM1 (ENSSSCG00000029230) #11	ADAMTSL4 (ENSSSCG00000006651) #13	MCL1 (ENSSSCG00000039314) #14	ENSA (ENSSSCG00000006653) #15	ENSSSCG00000049503	GOLPH3L (ENSSSCG00000038558) #16	HORMAD1 (ENSSSCG00000006649) #17	CTSS (ENSSSCG00000006648) #18	CTSK (ENSSSCG00000052889) #19	ARNT (ENSSSCG00000006646) #20	CTXND2 (ENSSSCG00000057128) #21	SETDB1 (ENSSSCG00000006645) #22	CERS2 (ENSSSCG00000006644) #23	ANXA9 (ENSSSCG00000006643) #24	MINDY1 (ENSSSCG00000006642) #25	PRUNE1 (ENSSSCG00000006641) #26	BNIPL (ENSSSCG00000006640) #27	C1orf56 (ENSSSCG00000006639) #29	MLLT11 (ENSSSCG00000030278) #32	CDC42SE1 (ENSSSCG00000031881) #30	GABPB2 (ENSSSCG00000006636) #33	SEMA6C (ENSSSCG00000006635) #34	TNFAIP8L2 (ENSSSCG00000006634) #35	LYSMD1 (ENSSSCG00000020965) #36	SCNM1 (ENSSSCG00000006632) #37	TMOD4 (ENSSSCG00000006631)	VPS72 (ENSSSCG00000031869)
Chacoan peccary	MODERN SPECIES	29	CIART (ENSCWAG00000009100)	MRPS21 (ENSCWAG00000009071) #7	PRPF3 (ENSCWAG00000008995) #8	RPRD2 (ENSCWAG00000008913) #9	TARS2 (ENSCWAG00000008672) #10	ECM1 (ENSCWAG00000008573) #11	ADAMTSL4 (ENSCWAG00000008396) #13	MCL1 (ENSCWAG00000008263) #14	ENSCWAG00000008100 #15	GOLPH3L (ENSCWAG00000008042) #16	HORMAD1 (ENSCWAG00000007637) #17	CTSS (ENSCWAG00000007587) #18	CTSK (ENSCWAG00000007556) #19	ARNT (ENSCWAG00000007457) #20	CTXND2 (ENSCWAG00000007433) #21	SETDB1 (ENSCWAG00000007313) #22	CERS2 (ENSCWAG00000007281) #23	ANXA9 (ENSCWAG00000007232) #24	MINDY1 (ENSCWAG00000007209) #25	PRUNE1 (ENSCWAG00000007173) #26	BNIPL (ENSCWAG00000007128) #27	C1orf56 (ENSCWAG00000007095) #29	CDC42SE1 (ENSCWAG00000007079) #30	MLLT11 (ENSCWAG00000007068) #32	GABPB2 (ENSCWAG00000007044) #33	SEMA6C (ENSCWAG00000006983) #34	TNFAIP8L2 (ENSCWAG00000006959) #35	LYSMD1 (ENSCWAG00000006908) #36	SCNM1 (ENSCWAG00000006857) #37	TMOD4 (ENSCWAG00000006804)	VPS72 (ENSCWAG00000006762)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Cetacea	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112.o.a #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703
Odontoceti	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262.f #26	ENSGT00450000040262.e.b #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112.o.a #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262.f #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112.o.a #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703
Dolphin	MODERN SPECIES	769																SETDB1 (ENSTTRG00000006966) #22	CERS2 (ENSTTRG00000006978) #23	MINDY1 (ENSTTRG00000006986) #25	PRUNE1 (ENSTTRG00000006991) #26	BNIPL (ENSTTRG00000006994) #27	CDC42SE1 (ENSTTRG00000007000) #30	MLLT11 (ENSTTRG00000007002) #32	GABPB2 (ENSTTRG00000007003) #33	SEMA6C (ENSTTRG00000007007) #34	TNFAIP8L2 (ENSTTRG00000007009) #35	SCNM1 (ENSTTRG00000007011) #37	TMOD4 (ENSTTRG00000007013)	VPS72 (ENSTTRG00000007015)	PIP5K1A (ENSTTRG00000007016)	PSMD4 (ENSTTRG00000007019)	ZNF687 (ENSTTRG00000007020)
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262.f #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112.o.a #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703
Monodontidae	ANCESTRAL SPECIES		ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.m #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00950000183109.c.a.a.m.b.d	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262.f #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112.o.a #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703
Beluga whale	MODERN SPECIES	99	APH1A (ENSDLEG00000009850)	ENSDLEG00000009839	CIART (ENSDLEG00000009825)	MRPS21 (ENSDLEG00000009817) #7	PRPF3 (ENSDLEG00000009787) #8	RPRD2 (ENSDLEG00000009754) #9	ECM1 (ENSDLEG00000009658) #10	ADAMTSL4 (ENSDLEG00000009315) #13	MCL1 (ENSDLEG00000009251) #14	ENSA (ENSDLEG00000009232) #15	GOLPH3L (ENSDLEG00000009214) #16	CTSS (ENSDLEG00000009183) #18	CTSK (ENSDLEG00000009129) #19	ARNT (ENSDLEG00000008978) #20	ENSDLEG00000008940	SETDB1 (ENSDLEG00000008865) #22	CERS2 (ENSDLEG00000008736) #23	MINDY1 (ENSDLEG00000008706) #25	PRUNE1 (ENSDLEG00000008668) #26	BNIPL (ENSDLEG00000008485) #27	C1orf56 (ENSDLEG00000008441) #29	CDC42SE1 (ENSDLEG00000008403) #30	MLLT11 (ENSDLEG00000008383) #32	GABPB2 (ENSDLEG00000008303) #33	SEMA6C (ENSDLEG00000008123) #34	TNFAIP8L2 (ENSDLEG00000011599) #35	LYSMD1 (ENSDLEG00000011595) #36	SCNM1 (ENSDLEG00000011581) #37	TMOD4 (ENSDLEG00000011565)	VPS72 (ENSDLEG00000011554)	PIP5K1A (ENSDLEG00000011526)
Narwhal	MODERN SPECIES	304	MRPS21 (ENSMMNG00015004720) #7	PRPF3 (ENSMMNG00015004709) #8	RPRD2 (ENSMMNG00015004667) #9	TARS2 (ENSMMNG00015004626) #10	ECM1 (ENSMMNG00015004604) #11	ADAMTSL4 (ENSMMNG00015004588) #13	MCL1 (ENSMMNG00015004577) #14	ENSA (ENSMMNG00015004565) #15	GOLPH3L (ENSMMNG00015004555) #16	HORMAD1 (ENSMMNG00015004509) #17	CTSS (ENSMMNG00015004454) #18	CTSK (ENSMMNG00015004429) #19	ARNT (ENSMMNG00015004336) #20	ENSMMNG00015004305	CTXND2 (ENSMMNG00015004301) #21	SETDB1 (ENSMMNG00015004269) #22	CERS2 (ENSMMNG00015004250) #23	MINDY1 (ENSMMNG00015004226) #25	PRUNE1 (ENSMMNG00015004204) #26	BNIPL (ENSMMNG00015004189) #27	C1orf56 (ENSMMNG00015004180) #29	ENSMMNG00015004170 #30	MLLT11 (ENSMMNG00015004162) #32	GABPB2 (ENSMMNG00015004107) #33	SEMA6C (ENSMMNG00015003950) #34	TNFAIP8L2 (ENSMMNG00015003890) #35	LYSMD1 (ENSMMNG00015003872) #36	SCNM1 (ENSMMNG00015003851) #37	TMOD4 (ENSMMNG00015003815)	VPS72 (ENSMMNG00015003778)	PIP5K1A (ENSMMNG00015003697)
Vaquita	MODERN SPECIES		RPRD2 (ENSPSNG00000001899) #9	TARS2 (ENSPSNG00000001970) #10	ECM1 (ENSPSNG00000002059) #11	ADAMTSL4 (ENSPSNG00000002117) #13	MCL1 (ENSPSNG00000002164) #14	ENSPSNG00000002192 #15	GOLPH3L (ENSPSNG00000002225) #16	HORMAD1 (ENSPSNG00000002291) #17	ENSPSNG00000002431	CTSS (ENSPSNG00000002456) #18	ENSPSNG00000002497	CTSK (ENSPSNG00000002537) #19	ARNT (ENSPSNG00000002599) #20	ENSPSNG00000002663	CTXND2 (ENSPSNG00000002678) #21	SETDB1 (ENSPSNG00000002722) #22	CERS2 (ENSPSNG00000002789) #23	MINDY1 (ENSPSNG00000002812) #25	PRUNE1 (ENSPSNG00000002841) #26	BNIPL (ENSPSNG00000002869) #27	C1orf56 (ENSPSNG00000002883) #29	CDC42SE1 (ENSPSNG00000002899) #30	MLLT11 (ENSPSNG00000002930) #32	GABPB2 (ENSPSNG00000002981) #33	SEMA6C (ENSPSNG00000003085) #34	TNFAIP8L2 (ENSPSNG00000003213) #35	LYSMD1 (ENSPSNG00000003233) #36	SCNM1 (ENSPSNG00000003271) #37	TMOD4 (ENSPSNG00000003298)	VPS72 (ENSPSNG00000003334)	PIP5K1A (ENSPSNG00000003403)
Blue whale	MODERN SPECIES		PRPF3 (ENSBMSG00010014445) #8	RPRD2 (ENSBMSG00010014508) #9	TARS2 (ENSBMSG00010014680) #10	ECM1 (ENSBMSG00010014903) #11	ENSBMSG00010014950	ADAMTSL4 (ENSBMSG00010014975) #13	ENSBMSG00010015010 #14	ENSBMSG00010015076 #15	GOLPH3L (ENSBMSG00010015147) #16	HORMAD1 (ENSBMSG00010015193) #17	CTSS (ENSBMSG00010015415) #18	ENSBMSG00010015501	CTSK (ENSBMSG00010015531) #19	ARNT (ENSBMSG00010015560) #20	CTXND2 (ENSBMSG00010015619) #21	SETDB1 (ENSBMSG00010015648) #22	CERS2 (ENSBMSG00010015712) #23	MINDY1 (ENSBMSG00010015736) #25	PRUNE1 (ENSBMSG00010015772) #26	BNIPL (ENSBMSG00010015820) #27	C1orf56 (ENSBMSG00010015857) #29	ENSBMSG00010015864 #30	MLLT11 (ENSBMSG00010015877) #32	GABPB2 (ENSBMSG00010015897) #33	SEMA6C (ENSBMSG00010015964) #34	TNFAIP8L2 (ENSBMSG00010016214) #35	LYSMD1 (ENSBMSG00010016236) #36	SCNM1 (ENSBMSG00010016290) #37	TMOD4 (ENSBMSG00010016336)	VPS72 (ENSBMSG00010016387)	PIP5K1A (ENSBMSG00010016429)
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Percora_a	ANCESTRAL SPECIES	1	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Bovidae	ANCESTRAL SPECIES	1	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Caprinae	ANCESTRAL SPECIES	2	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000003316.d.g.a.b.a.a	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00910000146771 #31	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Goat	MODERN SPECIES	22	RPRD2 (ENSCHIG00000023733) #9	TARS2 (ENSCHIG00000018559) #10	ECM1 (ENSCHIG00000010881) #11	ENSCHIG00000025006	ENSCHIG00000011166	ADAMTSL4 (ENSCHIG00000024595) #13	MCL1 (ENSCHIG00000027012) #14	ENSA (ENSCHIG00000011483) #15	ENSCHIG00000017930 #16	ENSCHIG00000006760	HORMAD1 (ENSCHIG00000010871) #17	CTSS (ENSCHIG00000022768) #18	ENSCHIG00000012927	CTSK (ENSCHIG00000011574) #19	ARNT (ENSCHIG00000012451) #20	SETDB1 (ENSCHIG00000010698) #22	CERS2 (ENSCHIG00000023499) #23	ANXA9 (ENSCHIG00000024087) #24	MINDY1 (ENSCHIG00000018101) #25	PRUNE1 (ENSCHIG00000011605) #26	BNIPL (ENSCHIG00000025222) #27	CDC42SE1 (ENSCHIG00000009064) #30	ENSCHIG00000010765 #31	MLLT11 (ENSCHIG00000001570) #32	GABPB2 (ENSCHIG00000017762) #33	SEMA6C (ENSCHIG00000027158) #34	TNFAIP8L2 (ENSCHIG00000008444) #35	LYSMD1 (ENSCHIG00000025538) #36	SCNM1 (ENSCHIG00000014264) #37	TMOD4 (ENSCHIG00000023166)	VPS72 (ENSCHIG00000014800)
Rambouillet Sheep	MODERN SPECIES		RPRD2 (ENSOARG00020008088) #9	TARS2 (ENSOARG00020008324) #10	ECM1 (ENSOARG00020008539) #11	ADAMTSL4 (ENSOARG00020008616) #13	MCL1 (ENSOARG00020008725) #14	ENSA (ENSOARG00020008758) #15	GOLPH3L (ENSOARG00020008878) #16	ENSOARG00020008922	HORMAD1 (ENSOARG00020008996) #17	CTSS (ENSOARG00020009546) #18	ENSOARG00020009638	CTSK (ENSOARG00020009669) #19	ARNT (ENSOARG00020009727) #20	ENSOARG00020011070	CTXND2 (ENSOARG00020011105) #21	SETDB1 (ENSOARG00020011148) #22	CERS2 (ENSOARG00020011401) #23	ANXA9 (ENSOARG00020011475) #24	MINDY1 (ENSOARG00020011596) #25	PRUNE1 (ENSOARG00020011679) #26	BNIPL (ENSOARG00020011956) #27	C1orf56 (ENSOARG00020011990) #29	CDC42SE1 (ENSOARG00020012045) #30	MLLT11 (ENSOARG00020012089) #32	GABPB2 (ENSOARG00020012123) #33	SEMA6C (ENSOARG00020012397) #34	TNFAIP8L2 (ENSOARG00020013414) #35	LYSMD1 (ENSOARG00020013436) #36	SCNM1 (ENSOARG00020013488) #37	TMOD4 (ENSOARG00020013556)	VPS72 (ENSOARG00020013630)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Bos	ANCESTRAL SPECIES		ENSGT00390000011497 #8	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Bos_a	ANCESTRAL SPECIES	47	ENSGT00390000011497 #8	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Wild yak	MODERN SPECIES	688	MRPS21 (ENSBMUG00000023447) #7	PRPF3 (ENSBMUG00000023465) #8	RPRD2 (ENSBMUG00000023488) #9	TARS2 (ENSBMUG00000023540) #10	ECM1 (ENSBMUG00000023627) #11	ADAMTSL4 (ENSBMUG00000023675) #13	MCL1 (ENSBMUG00000023701) #14	ENSA (ENSBMUG00000023727) #15	GOLPH3L (ENSBMUG00000023736) #16	HORMAD1 (ENSBMUG00000023788) #17	CTSS (ENSBMUG00000023817) #18	ENSBMUG00000023823	CTSK (ENSBMUG00000023829) #19	ARNT (ENSBMUG00000023892) #20	CTXND2 (ENSBMUG00000023928) #21	SETDB1 (ENSBMUG00000023958) #22	CERS2 (ENSBMUG00000023975) #23	ANXA9 (ENSBMUG00000023991) #24	MINDY1 (ENSBMUG00000024003) #25	PRUNE1 (ENSBMUG00000024019) #26	BNIPL (ENSBMUG00000024035) #27	C1orf56 (ENSBMUG00000024042) #29	CDC42SE1 (ENSBMUG00000024051) #30	MLLT11 (ENSBMUG00000024057) #32	GABPB2 (ENSBMUG00000024085) #33	SEMA6C (ENSBMUG00000024160) #34	TNFAIP8L2 (ENSBMUG00000024178) #35	LYSMD1 (ENSBMUG00000024179) #36	SCNM1 (ENSBMUG00000024189) #37	TMOD4 (ENSBMUG00000024204)	VPS72 (ENSBMUG00000024221)
Domestic yak	MODERN SPECIES	22	ENSBGRG00000000401	RPRD2 (ENSBGRG00000000422) #9	ENSBGRG00000000495	TARS2 (ENSBGRG00000000557) #10	ECM1 (ENSBGRG00000000897) #11	ADAMTSL4 (ENSBGRG00000000934) #13	MCL1 (ENSBGRG00000000962) #14	ENSA (ENSBGRG00000001008) #15	ENSBGRG00000001073 #16	HORMAD1 (ENSBGRG00000001109) #17	ENSBGRG00000001219	ENSBGRG00000001228	CTSK (ENSBGRG00000001240) #19	ARNT (ENSBGRG00000001283) #20	CTXND2 (ENSBGRG00000001358) #21	SETDB1 (ENSBGRG00000001377) #22	CERS2 (ENSBGRG00000001419) #23	ANXA9 (ENSBGRG00000001440) #24	MINDY1 (ENSBGRG00000001466) #25	PRUNE1 (ENSBGRG00000001499) #26	BNIPL (ENSBGRG00000001530) #27	C1orf56 (ENSBGRG00000001556) #29	CDC42SE1 (ENSBGRG00000001575) #30	MLLT11 (ENSBGRG00000001584) #32	GABPB2 (ENSBGRG00000001610) #33	SEMA6C (ENSBGRG00000001699) #34	TNFAIP8L2 (ENSBGRG00000001735) #35	LYSMD1 (ENSBGRG00000001747) #36	SCNM1 (ENSBGRG00000001758) #37	TMOD4 (ENSBGRG00000001770)	VPS72 (ENSBGRG00000001785)
Bos_b	ANCESTRAL SPECIES	1	ENSGT00390000011497 #8	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.o #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000154555.a.a.b	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Cow	MODERN SPECIES	22	CIART (ENSBTAG00000021487)	MRPS21 (ENSBTAG00000024378) #7	PRPF3 (ENSBTAG00000013946) #8	RPRD2 (ENSBTAG00000014984) #9	TARS2 (ENSBTAG00000003799) #10	ECM1 (ENSBTAG00000003806) #11	ADAMTSL4 (ENSBTAG00000003604) #13	MCL1 (ENSBTAG00000015154) #14	ENSA (ENSBTAG00000007123) #15	GOLPH3L (ENSBTAG00000020357) #16	HORMAD1 (ENSBTAG00000002724) #17	CTSS (ENSBTAG00000017135) #18	ENSBTAG00000050340	CTSK (ENSBTAG00000021035) #19	ARNT (ENSBTAG00000021037) #20	SETDB1 (ENSBTAG00000000098) #22	CERS2 (ENSBTAG00000000099) #23	ANXA9 (ENSBTAG00000015304) #24	MINDY1 (ENSBTAG00000015329) #25	PRUNE1 (ENSBTAG00000015336) #26	BNIPL (ENSBTAG00000015345) #27	C3H1orf56 (ENSBTAG00000015349) #29	MLLT11 (ENSBTAG00000015369) #32	GABPB2 (ENSBTAG00000015371) #33	SEMA6C (ENSBTAG00000007281) #34	TNFAIP8L2 (ENSBTAG00000020394) #35	LYSMD1 (ENSBTAG00000020395) #36	SCNM1 (ENSBTAG00000018070) #37	TMOD4 (ENSBTAG00000018071)	VPS72 (ENSBTAG00000018074)	PIP5K1A (ENSBTAG00000006099)
Hybrid Bos Indicus	MODERN SPECIES	22	CIART (ENSBIXG00005026269)	MRPS21 (ENSBIXG00005004483) #7	PRPF3 (ENSBIXG00005026388) #8	ENSBIXG00005026407	RPRD2 (ENSBIXG00005004524) #9	TARS2 (ENSBIXG00005007645) #10	ADAMTSL4 (ENSBIXG00005026752) #13	ENSBIXG00005026789 #14	ENSA (ENSBIXG00005026915) #15	GOLPH3L (ENSBIXG00005004612) #16	HORMAD1 (ENSBIXG00005027115) #17	ENSBIXG00005027168	CTSK (ENSBIXG00005027189) #19	ARNT (ENSBIXG00005006942) #20	CTXND2 (ENSBIXG00005027316) #21	SETDB1 (ENSBIXG00005027385) #22	CERS2 (ENSBIXG00005027450) #23	ANXA9 (ENSBIXG00005007589) #24	MINDY1 (ENSBIXG00005027538) #25	PRUNE1 (ENSBIXG00005027606) #26	BNIPL (ENSBIXG00005027654) #27	C1orf56 (ENSBIXG00005027664) #29	CDC42SE1 (ENSBIXG00005027674) #30	MLLT11 (ENSBIXG00005004758) #32	GABPB2 (ENSBIXG00005027729) #33	SEMA6C (ENSBIXG00005027801) #34	TNFAIP8L2 (ENSBIXG00005027841) #35	LYSMD1 (ENSBIXG00005027861) #36	SCNM1 (ENSBIXG00005027892) #37	TMOD4 (ENSBIXG00005027928)	VPS72 (ENSBIXG00005027956)
American bison	MODERN SPECIES	3032	MRPS21 (ENSBBBG00000023564) #7	PRPF3 (ENSBBBG00000023595) #8	RPRD2 (ENSBBBG00000023635) #9	TARS2 (ENSBBBG00000023752) #10	ECM1 (ENSBBBG00000023801) #11	ADAMTSL4 (ENSBBBG00000008423) #13	MCL1 (ENSBBBG00000023859) #14	ENSA (ENSBBBG00000023921) #15	ENSBBBG00000023935 #16	HORMAD1 (ENSBBBG00000024026) #17	CTSS (ENSBBBG00000024064) #18	ENSBBBG00000006254	CTSK (ENSBBBG00000006256) #19	ARNT (ENSBBBG00000024242) #20	CTXND2 (ENSBBBG00000006318) #21	SETDB1 (ENSBBBG00000006339) #22	CERS2 (ENSBBBG00000006357) #23	ANXA9 (ENSBBBG00000024438) #24	MINDY1 (ENSBBBG00000024479) #25	PRUNE1 (ENSBBBG00000000262) #26	BNIPL (ENSBBBG00000024535) #27	C1orf56 (ENSBBBG00000006397) #29	CDC42SE1 (ENSBBBG00000024557) #30
Siberian musk deer	MODERN SPECIES	247	PRPF3 (ENSMMSG00000020222) #8	RPRD2 (ENSMMSG00000020110) #9	TARS2 (ENSMMSG00000019987) #10	ECM1 (ENSMMSG00000019915) #11	ADAMTSL4 (ENSMMSG00000019809) #13	MCL1 (ENSMMSG00000019746) #14	ENSA (ENSMMSG00000019666) #15	ENSMMSG00000019621	ENSMMSG00000019604 #16	HORMAD1 (ENSMMSG00000019531) #17	CTSS (ENSMMSG00000019442) #18	ENSMMSG00000019418	CTSK (ENSMMSG00000019381) #19	ARNT (ENSMMSG00000019310) #20	CTXND2 (ENSMMSG00000019290) #21	SETDB1 (ENSMMSG00000019191) #22	CERS2 (ENSMMSG00000019147) #23	ANXA9 (ENSMMSG00000019107) #24	MINDY1 (ENSMMSG00000019051) #25	PRUNE1 (ENSMMSG00000018956) #26	BNIPL (ENSMMSG00000018916) #27	C1orf56 (ENSMMSG00000018885) #29	ENSMMSG00000018858 #30	MLLT11 (ENSMMSG00000018852) #32	GABPB2 (ENSMMSG00000018775) #33	SEMA6C (ENSMMSG00000018695) #34	TNFAIP8L2 (ENSMMSG00000018650) #35	LYSMD1 (ENSMMSG00000018627) #36	SCNM1 (ENSMMSG00000018590) #37	TMOD4 (ENSMMSG00000018543)	VPS72 (ENSMMSG00000018503)
Yarkand deer	MODERN SPECIES	12	CIART (ENSCHYG00000012538)	ENSCHYG00000012484 #7	PRPF3 (ENSCHYG00000012362) #8	RPRD2 (ENSCHYG00000012167) #9	TARS2 (ENSCHYG00000011458) #10	ECM1 (ENSCHYG00000011225) #11	ADAMTSL4 (ENSCHYG00000010890) #13	MCL1 (ENSCHYG00000010763) #14	ENSCHYG00000010464 #15	GOLPH3L (ENSCHYG00000010384) #16	HORMAD1 (ENSCHYG00000010140) #17	CTSS (ENSCHYG00000009944) #18	CTSK (ENSCHYG00000009848) #19	ARNT (ENSCHYG00000009373) #20	CTXND2 (ENSCHYG00000009233) #21	SETDB1 (ENSCHYG00000008840) #22	CERS2 (ENSCHYG00000008620) #23	ANXA9 (ENSCHYG00000008588) #24	MINDY1 (ENSCHYG00000008523) #25	PRUNE1 (ENSCHYG00000008341) #26	BNIPL (ENSCHYG00000008308) #27	C1orf56 (ENSCHYG00000008299) #29	CDC42SE1 (ENSCHYG00000008283) #30	ENSCHYG00000008272 #32	GABPB2 (ENSCHYG00000008209) #33	SEMA6C (ENSCHYG00000008002) #34	TNFAIP8L2 (ENSCHYG00000007962) #35	LYSMD1 (ENSCHYG00000007945) #36	SCNM1 (ENSCHYG00000007917) #37	TMOD4 (ENSCHYG00000007877)	ENSCHYG00000007817
Camelidae	ANCESTRAL SPECIES	6	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Arabian camel	MODERN SPECIES	13	ENSCDRG00005016574	CIART (ENSCDRG00005016658)	ENSCDRG00005016696 #7	PRPF3 (ENSCDRG00005016744) #8	RPRD2 (ENSCDRG00005016821) #9	TARS2 (ENSCDRG00005017096) #10	ECM1 (ENSCDRG00005017209) #11	ADAMTSL4 (ENSCDRG00005017304) #13	MCL1 (ENSCDRG00005017360) #14	ENSA (ENSCDRG00005017421) #15	GOLPH3L (ENSCDRG00005017458) #16	HORMAD1 (ENSCDRG00005017527) #17	CTSS (ENSCDRG00005017707) #18	CTSK (ENSCDRG00005017757) #19	ARNT (ENSCDRG00005017808) #20	SETDB1 (ENSCDRG00005018003) #22	CERS2 (ENSCDRG00005018124) #23	ANXA9 (ENSCDRG00005018156) #24	MINDY1 (ENSCDRG00005018219) #25	PRUNE1 (ENSCDRG00005018303) #26	BNIPL (ENSCDRG00005018369) #27	C1orf56 (ENSCDRG00005018387) #29	CDC42SE1 (ENSCDRG00005018416) #30	MLLT11 (ENSCDRG00005008910) #32	GABPB2 (ENSCDRG00005008942) #33	SEMA6C (ENSCDRG00005009095) #34	TNFAIP8L2 (ENSCDRG00005009207) #35	LYSMD1 (ENSCDRG00005009227) #36	SCNM1 (ENSCDRG00005009273) #37	TMOD4 (ENSCDRG00005009355)	VPS72 (ENSCDRG00005009442)
Alpaca	MODERN SPECIES	2206	ENSVPAG00000005423	CIART (ENSVPAG00000005424)	MRPS21 (ENSVPAG00000015525) #7	ENSVPAG00000015489	PRPF3 (ENSVPAG00000005425) #8	RPRD2 (ENSVPAG00000005426) #9	TARS2 (ENSVPAG00000005427) #10	ENSVPAG00000005428	MCL1 (ENSVPAG00000005430) #14	ENSA (ENSVPAG00000005431) #15	GOLPH3L (ENSVPAG00000005432) #16	HORMAD1 (ENSVPAG00000005435) #17	CTSS (ENSVPAG00000005436) #18	CTSK (ENSVPAG00000005437) #19	ARNT (ENSVPAG00000005439) #20	SETDB1 (ENSVPAG00000005440) #22
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Carnivora	ANCESTRAL SPECIES	1	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Caniformia	ANCESTRAL SPECIES	31	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Ursidae	ANCESTRAL SPECIES		ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Ursus	ANCESTRAL SPECIES	18	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00950000186073	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
American black bear	MODERN SPECIES	3555													ENSUAMG00000026728 #20	ENSUAMG00000026727 #20	ENSUAMG00000026726	SETDB1 (ENSUAMG00000026724) #22	CERS2 (ENSUAMG00000026723) #23
Polar bear	MODERN SPECIES	193	C1orf54 (ENSUMAG00000003742)	CIART (ENSUMAG00000003740)	MRPS21 (ENSUMAG00000003735) #7	PRPF3 (ENSUMAG00000003720) #8	RPRD2 (ENSUMAG00000003712) #9	TARS2 (ENSUMAG00000003705) #10	ECM1 (ENSUMAG00000003701) #11	ADAMTSL4 (ENSUMAG00000003512) #13	ENSA (ENSUMAG00000003476) #15	GOLPH3L (ENSUMAG00000003469) #16	HORMAD1 (ENSUMAG00000003454) #17	CTSS (ENSUMAG00000003442) #18	ENSUMAG00000003430	CTSK (ENSUMAG00000003426) #19	ARNT (ENSUMAG00000003392) #20	SETDB1 (ENSUMAG00000003141) #22	CERS2 (ENSUMAG00000003094) #23	ANXA9 (ENSUMAG00000003084) #24	MINDY1 (ENSUMAG00000003075) #25	PRUNE1 (ENSUMAG00000003066) #26	BNIPL (ENSUMAG00000003048) #27	C1orf56 (ENSUMAG00000003044) #29	CDC42SE1 (ENSUMAG00000003032) #30	MLLT11 (ENSUMAG00000003030) #32	GABPB2 (ENSUMAG00000003028) #33	SEMA6C (ENSUMAG00000002709) #34	LYSMD1 (ENSUMAG00000002659) #36	SCNM1 (ENSUMAG00000002656) #37	TMOD4 (ENSUMAG00000002565)	VPS72 (ENSUMAG00000002554)	PIP5K1A (ENSUMAG00000002546)
Giant Panda	MODERN SPECIES	11	C1orf54 (ENSAMEG00000001725)	CIART (ENSAMEG00000001706)	MRPS21 (ENSAMEG00000001703) #7	PRPF3 (ENSAMEG00000001630) #8	RPRD2 (ENSAMEG00000001598) #9	TARS2 (ENSAMEG00000001547) #10	ECM1 (ENSAMEG00000001502) #11	ADAMTSL4 (ENSAMEG00000001424) #13	MCL1 (ENSAMEG00000001399) #14	ENSA (ENSAMEG00000001375) #15	GOLPH3L (ENSAMEG00000030641) #16	HORMAD1 (ENSAMEG00000001321) #17	ENSAMEG00000001264 #18	ARNT (ENSAMEG00000001200) #20	ENSAMEG00000011643	SETDB1 (ENSAMEG00000001160) #22	CERS2 (ENSAMEG00000001115) #23	ANXA9 (ENSAMEG00000001101) #24	MINDY1 (ENSAMEG00000001070) #25	PRUNE1 (ENSAMEG00000001056) #26	BNIPL (ENSAMEG00000000980) #27	C1orf56 (ENSAMEG00000024447) #29	CDC42SE1 (ENSAMEG00000000978) #30	MLLT11 (ENSAMEG00000019143) #32	GABPB2 (ENSAMEG00000000961) #33	SEMA6C (ENSAMEG00000000929) #34	TNFAIP8L2 (ENSAMEG00000019127) #35	LYSMD1 (ENSAMEG00000000925) #36	SCNM1 (ENSAMEG00000000911) #37	TMOD4 (ENSAMEG00000000834)	VPS72 (ENSAMEG00000000824)
Mustelinae	ANCESTRAL SPECIES	81	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
American mink	MODERN SPECIES	316	MRPS21 (ENSNVIG00000016967) #7	PRPF3 (ENSNVIG00000016938) #8	RPRD2 (ENSNVIG00000016878) #9	TARS2 (ENSNVIG00000016668) #10	ECM1 (ENSNVIG00000016576) #11	ADAMTSL4 (ENSNVIG00000016514) #13	MCL1 (ENSNVIG00000016500) #14	ENSA (ENSNVIG00000016441) #15	GLP3L (ENSNVIG00000016426) #16	HORMAD1 (ENSNVIG00000016390) #17	CTSS (ENSNVIG00000016354) #18	CATK (ENSNVIG00000016339) #19	ARNT (ENSNVIG00000016210) #20	ENSNVIG00000016187	CTXND2 (ENSNVIG00000016170) #21	SETDB1 (ENSNVIG00000016086) #22	CERS2 (ENSNVIG00000016039) #23	ANXA9 (ENSNVIG00000016007) #24	MINDY1 (ENSNVIG00000015928) #25	PRUNE1 (ENSNVIG00000015904) #26	BNIPL (ENSNVIG00000015873) #27	C1orf56 (ENSNVIG00000015864) #29	CDC42SE1 (ENSNVIG00000015858) #30	GABPB2 (ENSNVIG00000015834) #33	SEMA6C (ENSNVIG00000015653) #34	TNFAIP8L2 (ENSNVIG00000015633) #35	LYSM1 (ENSNVIG00000015619) #36	SCNM1 (ENSNVIG00000015600) #37	TMOD4 (ENSNVIG00000015581)	VPS72 (ENSNVIG00000015557)	PIP5K1A (ENSNVIG00000015442)
Ferret	MODERN SPECIES	398	CIART (ENSMPUG00000005224)	MRPS21 (ENSMPUG00000005221) #7	PRPF3 (ENSMPUG00000005080) #8	RPRD2 (ENSMPUG00000005032) #9	TARS2 (ENSMPUG00000004795) #10	ECM1 (ENSMPUG00000004712) #11	ADAMTSL4 (ENSMPUG00000004691) #13	MCL1 (ENSMPUG00000004683) #14	ENSA (ENSMPUG00000004647) #15	GOLPH3L (ENSMPUG00000004608) #16	HORMAD1 (ENSMPUG00000004562) #17	CTSS (ENSMPUG00000004552) #18	ENSMPUG00000004471	CTSK (ENSMPUG00000004373) #19	ARNT (ENSMPUG00000004365) #20	SETDB1 (ENSMPUG00000004298) #22	CERS2 (ENSMPUG00000004292) #23	ANXA9 (ENSMPUG00000004217) #24	MINDY1 (ENSMPUG00000004209) #25	PRUNE1 (ENSMPUG00000004205) #26	BNIPL (ENSMPUG00000004137) #27	C1orf56 (ENSMPUG00000004134) #29	MLLT11 (ENSMPUG00000018421) #32	GABPB2 (ENSMPUG00000004074) #33	SEMA6C (ENSMPUG00000004065) #34	TNFAIP8L2 (ENSMPUG00000004060) #35	LYSMD1 (ENSMPUG00000004055) #36	SCNM1 (ENSMPUG00000004051) #37	TMOD4 (ENSMPUG00000004039)	VPS72 (ENSMPUG00000004027)	PIP5K1A (ENSMPUG00000003887)
Canidae	ANCESTRAL SPECIES	18	ENSGT00390000018360	ENSGT00500000045038.k #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00390000018360	ENSGT00500000045038.k #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Dog	MODERN SPECIES	8	CIART (ENSCAFG00845016855)	MRPS21 (ENSCAFG00845016904) #7	PRPF3 (ENSCAFG00845017034) #8	RPRD2 (ENSCAFG00845017196) #9	TARS2 (ENSCAFG00845017490) #10	ECM1 (ENSCAFG00845018089) #11	ADAMTSL4 (ENSCAFG00845018385) #13	MCL1 (ENSCAFG00845018496) #14	ENSA (ENSCAFG00845018577) #15	GOLPH3L (ENSCAFG00845018671) #16	HORMAD1 (ENSCAFG00845018896) #17	CTSS (ENSCAFG00845019241) #18	CTSK (ENSCAFG00845019461) #19	ARNT (ENSCAFG00845019671) #20	CTXND2 (ENSCAFG00845020148) #21	SETDB1 (ENSCAFG00845020216) #22	CERS2 (ENSCAFG00845020459) #23	ANXA9 (ENSCAFG00845020549) #24	MINDY1 (ENSCAFG00845020685) #25	PRUNE1 (ENSCAFG00845020879) #26	BNIPL (ENSCAFG00845021092) #27	C1orf56 (ENSCAFG00845021195) #29	MLLT11 (ENSCAFG00845021250) #32	GABPB2 (ENSCAFG00845021379) #33	SEMA6C (ENSCAFG00845021515) #34	TNFAIP8L2 (ENSCAFG00845021939) #35	LYSMD1 (ENSCAFG00845021963) #36	SCNM1 (ENSCAFG00845022000) #37	TMOD4 (ENSCAFG00845022073)	VPS72 (ENSCAFG00845022136)	PIP5K1A (ENSCAFG00845022223)
Dingo	MODERN SPECIES	223	C1orf54 (ENSCAFG00020019667)	CIART (ENSCAFG00020019665)	MRPS21 (ENSCAFG00020019663) #7	PRPF3 (ENSCAFG00020019653) #8	RPRD2 (ENSCAFG00020019619) #9	TARS2 (ENSCAFG00020019615) #10	ECM1 (ENSCAFG00020019611) #11	ADAMTSL4 (ENSCAFG00020019552) #13	MCL1 (ENSCAFG00020019541) #14	ENSA (ENSCAFG00020019539) #15	GOLPH3L (ENSCAFG00020019538) #16	HORMAD1 (ENSCAFG00020019532) #17	CTSS (ENSCAFG00020019528) #18	CTSK (ENSCAFG00020019521) #19	ARNT (ENSCAFG00020014304) #20	SETDB1 (ENSCAFG00020013596) #22	CERS2 (ENSCAFG00020013567) #23	ANXA9 (ENSCAFG00020013531) #24	MINDY1 (ENSCAFG00020013527) #25	PRUNE1 (ENSCAFG00020013525) #26	BNIPL (ENSCAFG00020013521) #27	C1orf56 (ENSCAFG00020013517) #29	CDC42SE1 (ENSCAFG00020013513) #30	MLLT11 (ENSCAFG00020013511) #32	GABPB2 (ENSCAFG00020013493) #33	SEMA6C (ENSCAFG00020013490) #34	TNFAIP8L2 (ENSCAFG00020013486) #35	LYSMD1 (ENSCAFG00020013482) #36	SCNM1 (ENSCAFG00020013477) #37	TMOD4 (ENSCAFG00020013465)	ENSCAFG00020013463
Red fox	MODERN SPECIES	176	CIART (ENSVVUG00000007857)	MRPS21 (ENSVVUG00000007865) #7	PRPF3 (ENSVVUG00000007933) #8	RPRD2 (ENSVVUG00000009075) #9	TARS2 (ENSVVUG00000009226) #10	ECM1 (ENSVVUG00000011492) #11	ENSVVUG00000011504	ADAMTSL4 (ENSVVUG00000011516) #13	MCL1 (ENSVVUG00000011532) #14	ENSA (ENSVVUG00000011538) #15	ENSVVUG00000011548 #16	CTSS (ENSVVUG00000011558) #18	CTSK (ENSVVUG00000011566) #19	ARNT (ENSVVUG00000011582) #20	ENSVVUG00000011618	SETDB1 (ENSVVUG00000011637) #22	CERS2 (ENSVVUG00000011653) #23	ANXA9 (ENSVVUG00000011665) #24	MINDY1 (ENSVVUG00000011699) #25	PRUNE1 (ENSVVUG00000011711) #26	BNIPL (ENSVVUG00000011719) #27	C1orf56 (ENSVVUG00000011731) #29	CDC42SE1 (ENSVVUG00000011739) #30	MLLT11 (ENSVVUG00000011750) #32	GABPB2 (ENSVVUG00000011753) #33	SEMA6C (ENSVVUG00000011791) #34	TNFAIP8L2 (ENSVVUG00000012677) #35	LYSMD1 (ENSVVUG00000012681) #36	SCNM1 (ENSVVUG00000012685) #37	TMOD4 (ENSVVUG00000012692)	VPS72 (ENSVVUG00000012757)
Felidae	ANCESTRAL SPECIES	10	ENSGT00500000045038.n #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009588.fb.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Panthera	ANCESTRAL SPECIES	40	ENSGT00500000045038.n.a #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009588.fb.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Panthera_a	ANCESTRAL SPECIES	38	ENSGT00500000045038.n.a #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00390000009588.fb.b	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
leopard	MODERN SPECIES	149	PRPF3 (ENSPPRG00000000731) #8	ENSPPRG00000000561	RPRD2 (ENSPPRG00000000487) #9	TARS2 (ENSPPRG00000019975) #10	ECM1 (ENSPPRG00000013966) #11	ADAMTSL4 (ENSPPRG00000012710) #13	MCL1 (ENSPPRG00000011968) #14	ENSPPRG00000011393 #15	GOLPH3L (ENSPPRG00000010135) #16	HORMAD1 (ENSPPRG00000010018) #17	CTSS (ENSPPRG00000008620) #18	CTSK (ENSPPRG00000008091) #19	ARNT (ENSPPRG00000007894) #20	ENSPPRG00000006841	CTXND2 (ENSPPRG00000015884) #21	SETDB1 (ENSPPRG00000005462) #22	CERS2 (ENSPPRG00000003137) #23	ANXA9 (ENSPPRG00000003017) #24	MINDY1 (ENSPPRG00000002925) #25	PRUNE1 (ENSPPRG00000002301) #26	BNIPL (ENSPPRG00000001137) #27	C1orf56 (ENSPPRG00000000789) #29	CDC42SE1 (ENSPPRG00000000753) #30	MLLT11 (ENSPPRG00000015706) #32	GABPB2 (ENSPPRG00000021737) #33	SEMA6C (ENSPPRG00000016004) #34	TNFAIP8L2 (ENSPPRG00000015393) #35	LYSMD1 (ENSPPRG00000009376) #36	SCNM1 (ENSPPRG00000008819) #37	TMOD4 (ENSPPRG00000008141)	VPS72 (ENSPPRG00000008110)
lion	MODERN SPECIES	8	CIART (ENSPLOG00000018806)	ENSPLOG00000018890 #7	PRPF3 (ENSPLOG00000018919) #8	RPRD2 (ENSPLOG00000018951) #9	TARS2 (ENSPLOG00000019042) #10	ECM1 (ENSPLOG00000019469) #11	ADAMTSL4 (ENSPLOG00000019514) #13	MCL1 (ENSPLOG00000019623) #14	ENSPLOG00000019678 #15	GOLPH3L (ENSPLOG00000019714) #16	HORMAD1 (ENSPLOG00000019828) #17	CTSK (ENSPLOG00000020110) #19	ARNT (ENSPLOG00000020141) #20	ENSPLOG00000020188	CTXND2 (ENSPLOG00000020213) #21	SETDB1 (ENSPLOG00000020237) #22	CERS2 (ENSPLOG00000020309) #23	ANXA9 (ENSPLOG00000020367) #24	MINDY1 (ENSPLOG00000020401) #25	PRUNE1 (ENSPLOG00000020473) #26	BNIPL (ENSPLOG00000020559) #27	C1orf56 (ENSPLOG00000020617) #29	CDC42SE1 (ENSPLOG00000020633) #30	MLLT11 (ENSPLOG00000020660) #32	GABPB2 (ENSPLOG00000020686) #33	SEMA6C (ENSPLOG00000020778) #34	TNFAIP8L2 (ENSPLOG00000021032) #35	LYSMD1 (ENSPLOG00000021058) #36	SCNM1 (ENSPLOG00000021105) #37	TMOD4 (ENSPLOG00000021143)	VPS72 (ENSPLOG00000021188)
Tiger	MODERN SPECIES	275	ENSPTIG00000003850 #7	PRPF3 (ENSPTIG00000005516) #8	RPRD2 (ENSPTIG00000006304) #9	TARS2 (ENSPTIG00000008079) #10	ECM1 (ENSPTIG00000012717) #11	ADAMTSL4 (ENSPTIG00000015181) #13	MCL1 (ENSPTIG00000016268) #14	ENSA (ENSPTIG00000016622) #15	GOLPH3L (ENSPTIG00000019004) #16	HORMAD1 (ENSPTIG00000019960) #17	CTSS (ENSPTIG00000001310) #18	CTSK (ENSPTIG00000004636) #19	ARNT (ENSPTIG00000006152) #20	ENSPTIG00000012578	CTXND2 (ENSPTIG00000005780) #21	SETDB1 (ENSPTIG00000014233) #22	CERS2 (ENSPTIG00000018998) #23	ANXA9 (ENSPTIG00000021585) #24	MINDY1 (ENSPTIG00000000898) #25	PRUNE1 (ENSPTIG00000003242) #26	BNIPL (ENSPTIG00000007131) #27	C1orf56 (ENSPTIG00000008272) #29	CDC42SE1 (ENSPTIG00000008491) #30	MLLT11 (ENSPTIG00000005928) #32	GABPB2 (ENSPTIG00000009109) #33	ENSPTIG00000009931 #34	TNFAIP8L2 (ENSPTIG00000005950) #35	LYSMD1 (ENSPTIG00000011723) #36	SCNM1 (ENSPTIG00000012793) #37	TMOD4 (ENSPTIG00000013183)	VPS72 (ENSPTIG00000013626)
Cat	MODERN SPECIES	239	CIART (ENSFCAG00000013937)	ENSFCAG00000034082 #7	PRPF3 (ENSFCAG00000013940) #8	RPRD2 (ENSFCAG00000030083) #9	MCL1 (ENSFCAG00000030278) #14	TARS2 (ENSFCAG00000001702) #10	ECM1 (ENSFCAG00000027224) #11	ADAMTSL4 (ENSFCAG00000000754) #13	ENSA (ENSFCAG00000024290) #15	GOLPH3L (ENSFCAG00000035181) #16	HORMAD1 (ENSFCAG00000025264) #17	CTSS (ENSFCAG00000003642) #18	CTSK (ENSFCAG00000003643) #19	ARNT (ENSFCAG00000003644) #20	ENSFCAG00000035512	SETDB1 (ENSFCAG00000009655) #22	CERS2 (ENSFCAG00000009657) #23	ANXA9 (ENSFCAG00000009658) #24	ENSFCAG00000052357	MINDY1 (ENSFCAG00000009660) #25	PRUNE1 (ENSFCAG00000044569) #26	BNIPL (ENSFCAG00000032352) #27	C1orf56 (ENSFCAG00000041587) #29	CDC42SE1 (ENSFCAG00000052064) #30	MLLT11 (ENSFCAG00000027874) #32	GABPB2 (ENSFCAG00000033249) #33	SEMA6C (ENSFCAG00000005557) #34	TNFAIP8L2 (ENSFCAG00000005558) #35	LYSMD1 (ENSFCAG00000036601) #36	SCNM1 (ENSFCAG00000005560) #37	TMOD4 (ENSFCAG00000005561)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Microbat	MODERN SPECIES	1088	APH1A (ENSMLUG00000013692)	C1orf54 (ENSMLUG00000013704)	CIART (ENSMLUG00000013709)	MRPS21 (ENSMLUG00000025875) #7	RPRD2 (ENSMLUG00000013112) #9	TARS2 (ENSMLUG00000013123) #10	ECM1 (ENSMLUG00000013133) #11	ADAMTSL4 (ENSMLUG00000003472) #13	ENSMLUG00000029657	ENSA (ENSMLUG00000027950) #15	GOLPH3L (ENSMLUG00000003484) #16	HORMAD1 (ENSMLUG00000003485) #17	CTSS (ENSMLUG00000003491) #18	CTSK (ENSMLUG00000003495) #19	ARNT (ENSMLUG00000003502) #20	SETDB1 (ENSMLUG00000010486) #22	CERS2 (ENSMLUG00000010519) #23	ANXA9 (ENSMLUG00000010544) #24	ENSMLUG00000010567 #25	PRUNE1 (ENSMLUG00000010581) #26	BNIPL (ENSMLUG00000010588) #27	C1orf56 (ENSMLUG00000023169) #29	MLLT11 (ENSMLUG00000027273) #32	GABPB2 (ENSMLUG00000002973) #33	SEMA6C (ENSMLUG00000002978) #34	ENSMLUG00000015143 #35	LYSMD1 (ENSMLUG00000023399) #36	SCNM1 (ENSMLUG00000015145) #37	TMOD4 (ENSMLUG00000015148)	VPS72 (ENSMLUG00000015162)	PIP5K1A (ENSMLUG00000015171)
Greater horseshoe bat	MODERN SPECIES	14	PRPF3 (ENSRFEG00010020436) #8	RPRD2 (ENSRFEG00010020482) #9	TARS2 (ENSRFEG00010020572) #10	ECM1 (ENSRFEG00010020676) #11	ADAMTSL4 (ENSRFEG00010020724) #13	MCL1 (ENSRFEG00010020768) #14	ENSA (ENSRFEG00010020814) #15	ENSRFEG00010020865	GOLPH3L (ENSRFEG00010020873) #16	HORMAD1 (ENSRFEG00010020903) #17	CTSS (ENSRFEG00010021017) #18	CTSK (ENSRFEG00010021054) #19	ENSRFEG00010021080	ARNT (ENSRFEG00010021097) #20	CTXND2 (ENSRFEG00010021199) #21	SETDB1 (ENSRFEG00010021209) #22	CERS2 (ENSRFEG00010021239) #23	ANXA9 (ENSRFEG00010021262) #24	MINDY1 (ENSRFEG00010021279) #25	PRUNE1 (ENSRFEG00010021296) #26	BNIPL (ENSRFEG00010021309) #27	C1orf56 (ENSRFEG00010021323) #29	ENSRFEG00010021328 #30	MLLT11 (ENSRFEG00010021338) #32	GABPB2 (ENSRFEG00010021352) #33	SEMA6C (ENSRFEG00010021390) #34	TNFAIP8L2 (ENSRFEG00010021420) #35	LYSMD1 (ENSRFEG00010021428) #36	SCNM1 (ENSRFEG00010021441) #37	TMOD4 (ENSRFEG00010021448)	VPS72 (ENSRFEG00010021466)
Megabat	MODERN SPECIES	1048						TARS2 (ENSPVAG00000004340) #10	ECM1 (ENSPVAG00000004342) #11	ADAMTSL4 (ENSPVAG00000004344) #13	MCL1 (ENSPVAG00000004347) #14	ENSA (ENSPVAG00000004348) #15	GOLPH3L (ENSPVAG00000004349) #16	HORMAD1 (ENSPVAG00000004350) #17	CTSS (ENSPVAG00000004352) #18	CTSK (ENSPVAG00000004353) #19	ARNT (ENSPVAG00000004354) #20	SETDB1 (ENSPVAG00000004355) #22
Equus	ANCESTRAL SPECIES	3	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000164740 #21	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00860000134665	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734
Donkey	MODERN SPECIES	17	CIART (ENSEASG00005001554)	MRPS21 (ENSEASG00005001557) #7	PRPF3 (ENSEASG00005001566) #8	RPRD2 (ENSEASG00005001574) #9	TARS2 (ENSEASG00005001587) #10	ECM1 (ENSEASG00005001606) #11	ADAMTSL4 (ENSEASG00005001774) #13	MCL1 (ENSEASG00005002018) #14	ENSA (ENSEASG00005025935) #15	GOLPH3L (ENSEASG00005034481) #16	HORMAD1 (ENSEASG00005002037) #17	CTSS (ENSEASG00005002042) #18	CTSK (ENSEASG00005002046) #19	ARNT (ENSEASG00005002052) #20	CTXND2 (ENSEASG00005023903) #21	SETDB1 (ENSEASG00005002061) #22	CERS2 (ENSEASG00005002064) #23	ANXA9 (ENSEASG00005002066) #24	MINDY1 (ENSEASG00005002074) #25	PRUNE1 (ENSEASG00005002076) #26	BNIPL (ENSEASG00005002080) #27	ENSEASG00005002085 #29	ENSEASG00005027259 #30	ENSEASG00005033916	GABPB2 (ENSEASG00005002094) #33	SEMA6C (ENSEASG00005002102) #34	TNFAIP8L2 (ENSEASG00005034798) #35	LYSMD1 (ENSEASG00005034347) #36	TMOD4 (ENSEASG00005002119)	ENSEASG00005002113 #37	ENSEASG00005002121
Horse	MODERN SPECIES	26	APH1A (ENSECAG00000012998)	CA14 (ENSECAG00000002916)	CIART (ENSECAG00000010349)	PRPF3 (ENSECAG00000019840) #8	RPRD2 (ENSECAG00000018617) #9	TARS2 (ENSECAG00000014276) #10	ECM1 (ENSECAG00000008545) #11	ADAMTSL4 (ENSECAG00000019154) #13	MCL1 (ENSECAG00000018823) #14	ENSA (ENSECAG00000017165) #15	GOLPH3L (ENSECAG00000016587) #16	HORMAD1 (ENSECAG00000011731) #17	CTSS (ENSECAG00000022438) #18	CTSK (ENSECAG00000019087) #19	ARNT (ENSECAG00000009602) #20	SETDB1 (ENSECAG00000023954) #22	CERS2 (ENSECAG00000018141) #23	MINDY1 (ENSECAG00000009096) #25	ANXA9 (ENSECAG00000014801) #24	PRUNE1 (ENSECAG00000000743) #26	C5H1orf56 (ENSECAG00000022044) #29	CDC42SE1 (ENSECAG00000052501) #30	MLLT11 (ENSECAG00000021503) #32	GABPB2 (ENSECAG00000014497) #33	SEMA6C (ENSECAG00000000588) #34	TNFAIP8L2 (ENSECAG00000007696) #35	TMOD4 (ENSECAG00000019026)	SCNM1 (ENSECAG00000023965) #37	VPS72 (ENSECAG00000017754)	PIP5K1A (ENSECAG00000008201)	ENSECAG00000048200
Eulipotyphla	ANCESTRAL SPECIES	127																ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30
Common shrew	MODERN SPECIES	3046																ENSSARG00000002693 #22	CERS2 (ENSSARG00000002775) #23	ENSSARG00000002798 #27	C1orf56 (ENSSARG00000002823) #29	CDC42SE1 (ENSSARG00000002846) #30
Hedgehog	MODERN SPECIES	4020																SETDB1 (ENSEEUG00000015825) #22	CERS2 (ENSEEUG00000015863) #23
Atlantogenata	ANCESTRAL SPECIES	66	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Afrotheria	ANCESTRAL SPECIES	76	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Afrotheria_a	ANCESTRAL SPECIES	75	ENSGT00390000003103	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Elephant	MODERN SPECIES	26	C1orf54 (ENSLAFG00000022852)	CIART (ENSLAFG00000002729)	MRPS21 (ENSLAFG00000030348) #7	PRPF3 (ENSLAFG00000004713) #8	RPRD2 (ENSLAFG00000004975) #9	TARS2 (ENSLAFG00000004979) #10	ECM1 (ENSLAFG00000028827) #11	ADAMTSL4 (ENSLAFG00000030426) #13	MCL1 (ENSLAFG00000011260) #14	ENSA (ENSLAFG00000011261) #15	GOLPH3L (ENSLAFG00000031294) #16	HORMAD1 (ENSLAFG00000011265) #17	CTSS (ENSLAFG00000011276) #18	CTSK (ENSLAFG00000011279) #19	ARNT (ENSLAFG00000011282) #20	SETDB1 (ENSLAFG00000004006) #22	CERS2 (ENSLAFG00000028936) #23	ANXA9 (ENSLAFG00000004011) #24	MINDY1 (ENSLAFG00000004012) #25	PRUNE1 (ENSLAFG00000004016) #26	BNIPL (ENSLAFG00000029342) #27	C1orf56 (ENSLAFG00000004017) #29	CDC42SE1 (ENSLAFG00000004019) #30	MLLT11 (ENSLAFG00000020588) #32	GABPB2 (ENSLAFG00000004020) #33	SEMA6C (ENSLAFG00000010983) #34	LYSMD1 (ENSLAFG00000013404) #36	SCNM1 (ENSLAFG00000013409) #37	TMOD4 (ENSLAFG00000013414)	VPS72 (ENSLAFG00000013421)	PIP5K1A (ENSLAFG00000013425)
Hyrax	MODERN SPECIES	3217																SETDB1 (ENSPCAG00000002527) #22	CERS2 (ENSPCAG00000002617) #23	ANXA9 (ENSPCAG00000002679) #24	MINDY1 (ENSPCAG00000002750) #25	PRUNE1 (ENSPCAG00000002774) #26	BNIPL (ENSPCAG00000002807) #27	CDC42SE1 (ENSPCAG00000002881) #30	MLLT11 (ENSPCAG00000002899) #32	GABPB2 (ENSPCAG00000002909) #33	SEMA6C (ENSPCAG00000002952) #34	TNFAIP8L2 (ENSPCAG00000003022) #35	LYSMD1 (ENSPCAG00000003030) #36	SCNM1 (ENSPCAG00000003064) #37	TMOD4 (ENSPCAG00000003101)	VPS72 (ENSPCAG00000003194)	PIP5K1A (ENSPCAG00000003223)
Tenrec	MODERN SPECIES	8596																ENSETEG00000013351 #22
Xenarthra	ANCESTRAL SPECIES	253																ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Armadillo	MODERN SPECIES	1323																SETDB1 (ENSDNOG00000007754) #22	CERS2 (ENSDNOG00000007761) #23	ANXA9 (ENSDNOG00000006510) #24	MINDY1 (ENSDNOG00000001917) #25	PRUNE1 (ENSDNOG00000016363) #26	BNIPL (ENSDNOG00000016365) #27	CDC42SE1 (ENSDNOG00000043995) #30	ENSDNOG00000049501 #32	ENSDNOG00000004312 #33	SEMA6C (ENSDNOG00000043434) #34	TNFAIP8L2 (ENSDNOG00000004318) #35	LYSMD1 (ENSDNOG00000037068) #36	SCNM1 (ENSDNOG00000004323) #37	TMOD4 (ENSDNOG00000004327)	VPS72 (ENSDNOG00000004332)
Sloth	MODERN SPECIES	3549																SETDB1 (ENSCHOG00000004013) #22	ENSCHOG00000004042 #23
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000002049.c.a	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00390000002049.c.a	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00390000002049.c.a	ENSGT00390000018360	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	5065																ENSMEUG00000006544 #22	CERS2 (ENSMEUG00000006577) #23	ANXA9 (ENSMEUG00000006597) #24	MINDY1 (ENSMEUG00000006614) #25
Wallaby	MODERN SPECIES	6443																ENSMEUG00000000555 #22	ENSMEUG00000000549
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00390000002049.c.a	ENSGT00390000018360	ENSGT00500000045038.gb #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000161600 #10	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00390000014288 #29	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1007	ENSVURG00010000715	ENSVURG00010000676	ENSVURG00010000650 #7	ENSVURG00010000618 #8	ENSVURG00010000591 #9	ENSVURG00010000553 #10	ENSVURG00010000529 #11	ENSVURG00010000490 #13	ENSVURG00010000461 #14	ENSVURG00010000444 #15	ENSVURG00010000422 #16	ENSVURG00010000357 #17	ENSVURG00010000321 #18	ENSVURG00010000306 #19	ENSVURG00010000270 #20	ENSVURG00010000234 #22	ENSVURG00010000206 #23	ENSVURG00010000188 #24	ENSVURG00010000167 #25	ENSVURG00010000146 #26	ENSVURG00010000128 #27	ENSVURG00010000117 #29	ENSVURG00010000108 #30	ENSVURG00010018897 #33	ENSVURG00010018895 #35	ENSVURG00010018879 #34	ENSVURG00010018892 #36	ENSVURG00010018868 #37	ENSVURG00010018858	ENSVURG00010018853	ENSVURG00010018840
Common wonbat	MODERN SPECIES	1007	ENSVURG00010015618	ENSVURG00010015603	ENSVURG00010015584 #7	ENSVURG00010015568 #8	ENSVURG00010015284 #9	ENSVURG00010015119 #10	ENSVURG00010015082 #11	ENSVURG00010015042 #13	ENSVURG00010015036 #14	ENSVURG00010015024 #15	ENSVURG00010015007 #16	ENSVURG00010014924 #17	ENSVURG00010014896 #18	ENSVURG00010014884 #19	ENSVURG00010014843 #20	ENSVURG00010014816 #22	ENSVURG00010014801 #23	ENSVURG00010014785 #24	ENSVURG00010014761 #25	ENSVURG00010014734 #26	ENSVURG00010014689 #27	ENSVURG00010014712 #29	ENSVURG00010014667 #30	MLLT11 (ENSVURG00010014655) #32	ENSVURG00010014626 #33	ENSVURG00010014579 #34	ENSVURG00010014564 #35	ENSVURG00010014557 #36	ENSVURG00010014549 #37	ENSVURG00010014536	ENSVURG00010014525
Tasmanian devil	MODERN SPECIES	3	ANP32E (ENSSHAG00000021363)	CA14 (ENSSHAG00000009010)	APH1A (ENSSHAG00000022849)	CIART (ENSSHAG00000021296)	MRPS21 (ENSSHAG00000029824) #7	RPRD2 (ENSSHAG00000009969) #9	TARS2 (ENSSHAG00000010286) #10	ENSSHAG00000009548 #8	ECM1 (ENSSHAG00000010367) #11	ADAMTSL4 (ENSSHAG00000010707) #13	MCL1 (ENSSHAG00000021636) #14	ENSA (ENSSHAG00000029217) #15	HORMAD1 (ENSSHAG00000011613) #17	CTSS (ENSSHAG00000011950) #18	ARNT (ENSSHAG00000025438) #20	SETDB1 (ENSSHAG00000012701) #22	CERS2 (ENSSHAG00000012811) #23	MINDY1 (ENSSHAG00000013033) #25	ANXA9 (ENSSHAG00000012884) #24	ENSSHAG00000028099 #29	ENSSHAG00000029597 #26	ENSSHAG00000026643 #27	GABPB2 (ENSSHAG00000030596) #33	MLLT11 (ENSSHAG00000025455) #32	ENSSHAG00000025507 #36	SEMA6C (ENSSHAG00000013618) #34	ENSSHAG00000022218 #35	SCNM1 (ENSSHAG00000013796) #37	TMOD4 (ENSSHAG00000013797)	VPS72 (ENSSHAG00000013847)	PIP5K1A (ENSSHAG00000013894)
Opossum	MODERN SPECIES	1	APH1A (ENSMODG00000018778)	ENSMODG00000018781	MRPS21 (ENSMODG00000018783) #7	PRPF3 (ENSMODG00000018774) #8	RPRD2 (ENSMODG00000018786) #9	TARS2 (ENSMODG00000018792) #10	ENSMODG00000018796 #11	MCL1 (ENSMODG00000018801) #14	ADAMTSL4 (ENSMODG00000018799) #13	ENSA (ENSMODG00000018804) #15	GOLPH3L (ENSMODG00000051501) #16	HORMAD1 (ENSMODG00000018807) #17	CTSS (ENSMODG00000018809) #18	CTSK (ENSMODG00000018811) #19	ARNT (ENSMODG00000018814) #20	SETDB1 (ENSMODG00000018821) #22	CERS2 (ENSMODG00000018825) #23	ANXA9 (ENSMODG00000018826) #24	MINDY1 (ENSMODG00000018827) #25	PRUNE1 (ENSMODG00000045279) #26	BNIPL (ENSMODG00000046354) #27	ENSMODG00000018832 #29	CDC42SE1 (ENSMODG00000018833) #30	MLLT11 (ENSMODG00000023207) #32	GABPB2 (ENSMODG00000018836) #33	SEMA6C (ENSMODG00000018839) #34	ENSMODG00000048842	TNFAIP8L2 (ENSMODG00000023206) #35	LYSMD1 (ENSMODG00000018841) #36	SCNM1 (ENSMODG00000042115) #37	TMOD4 (ENSMODG00000018845)
Sauria	ANCESTRAL SPECIES	28	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Archosauria	ANCESTRAL SPECIES	36	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00940000166610	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703
Aves	ANCESTRAL SPECIES	36	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00940000166610	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703	ENSGT00990000206813	ENSGT00530000064050
African ostrich	MODERN SPECIES	361												ENSSCUG00000004573 #18	CTSK (ENSSCUG00000004565) #19	ARNT (ENSSCUG00000004557) #20	ENSSCUG00000004552	SETDB1 (ENSSCUG00000004548) #22	CERS2 (ENSSCUG00000004539) #23	MINDY1 (ENSSCUG00000004530) #25	PRUNE1 (ENSSCUG00000004525) #26	BNIPL (ENSSCUG00000004524) #27	ENSSCUG00000004520 #30	MLLT11 (ENSSCUG00000004516) #32	GABPB2 (ENSSCUG00000004511) #33
Neognathae	ANCESTRAL SPECIES	36												ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703	ENSGT00990000206813	ENSGT00530000064050
Neognathae_b	ANCESTRAL SPECIES	34	ENSGT00730000111185	ENSGT00390000005869.a	ENSGT00390000014273.b	ENSGT00940000164422	ENSGT00940000158423	ENSGT00940000157203	ENSGT00390000002799	ENSGT00390000013847	ENSGT01030000234539.a.a.b.a.a	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734.g	ENSGT00390000017503	ENSGT00940000154703	ENSGT00990000206813	ENSGT00530000064050
Passeriformes	ANCESTRAL SPECIES	36	ENSGT00940000159172	ENSGT00550000075028	ENSGT00530000063760.b	ENSGT00950000182907.a.a	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00940000164936	ENSGT00940000166610	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000158641 #34	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #18	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989	ENSGT00390000016136	ENSGT00940000160806	ENSGT00390000010652.B	ENSGT00940000160472
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00940000160276	ENSGT00940000159172	ENSGT00550000075028	ENSGT00530000063760.b	ENSGT00950000182907.a.a	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00940000166610	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00940000158641 #34	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #18	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989	ENSGT00390000016136	ENSGT00940000160806	ENSGT00390000010652.B	ENSGT00940000160472	ENSGT00390000004097.b
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00940000160276	ENSGT00940000159172	ENSGT00550000075028	ENSGT00530000063760.b	ENSGT00950000182907.a.a	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00940000166610	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00940000158641 #34	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #18	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989	ENSGT00390000016136	ENSGT00940000160806	ENSGT00390000010652.B	ENSGT00940000160472	ENSGT00390000004097.b
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00940000160276	ENSGT00940000159172	ENSGT00550000075028	ENSGT00530000063760.b	ENSGT00950000182907.a.a	ENSGT00390000002049.c.a	ENSGT00940000156893	ENSGT00940000166610	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348.e	ENSGT00390000006215 #11	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00940000158641 #34	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #18	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000159989	ENSGT00390000016136	ENSGT00940000160806	ENSGT00390000010652.B	ENSGT00940000160472	ENSGT00390000004097.b
Common canary	MODERN SPECIES	81	ENSSCAG00000011787	SF3B4 (ENSSCAG00000011792)	ENSSCAG00000011796	OTUD7B (ENSSCAG00000011804)	VPS45 (ENSSCAG00000011835)	PLEKHO1 (ENSSCAG00000011918)	ANP32E (ENSSCAG00000011934)	CA14 (ENSSCAG00000011941)	APH1A (ENSSCAG00000011945)	ENSSCAG00000011949	ENSSCAG00000011951	PRPF3 (ENSSCAG00000011963) #8	ENSSCAG00000011971 #9	CTSK (ENSSCAG00000011979) #19	ARNT (ENSSCAG00000011985) #20	SETDB1 (ENSSCAG00000012005) #22	CERS2 (ENSSCAG00000012013) #23	PRUNE1 (ENSSCAG00000012016) #26	MLLT11 (ENSSCAG00000012022) #32	ENSSCAG00000012029	MSTO1 (ENSSCAG00000012061)	ASH1L (ENSSCAG00000012148)	ENSSCAG00000012172	FDPS (ENSSCAG00000012185)	ENSSCAG00000012198	CLK2 (ENSSCAG00000012209)	ENSSCAG00000012237	ENSSCAG00000012243	ENSSCAG00000012249	THBS3 (ENSSCAG00000012370)	MTX1 (ENSSCAG00000012724)
Zebra finch	MODERN SPECIES	18	MTMR11 (ENSTGUG00000004470)	OTUD7B (ENSTGUG00000004479)	VPS45 (ENSTGUG00000004493)	PLEKHO1 (ENSTGUG00000019427)	ANP32E (ENSTGUG00000004542)	APH1A (ENSTGUG00000020297)	CA14 (ENSTGUG00000020197)	ENSTGUG00000028735	PRPF3 (ENSTGUG00000004552) #8	RPRD2 (ENSTGUG00000004590) #9	ENSTGUG00000004602	ECM1 (ENSTGUG00000021608) #11	CTSK (ENSTGUG00000027582) #19	ARNT (ENSTGUG00000004647) #20	ENSTGUG00000023543	SETDB1 (ENSTGUG00000004684) #22	CERS2 (ENSTGUG00000004716) #23	MINDY1 (ENSTGUG00000023060) #25	PRUNE1 (ENSTGUG00000004774) #26	CDC42SE1 (ENSTGUG00000004784) #30	SEMA6C (ENSTGUG00000025575) #34	ENSTGUG00000021515	ENSTGUG00000026016	ARHGEF2 (ENSTGUG00000021755)	ENSTGUG00000027726 #18	ENSTGUG00000024864	RPS27 (ENSTGUG00000024584)	RAB13 (ENSTGUG00000025090)	SLC39A1 (ENSTGUG00000028450)	JTB (ENSTGUG00000017380)	CREB3L4 (ENSTGUG00000028210)
Medium ground finch	MODERN SPECIES	314		LIX1L (ENSGFOG00000007433)	RBM8A (ENSGFOG00000007446)	TXNIP (ENSGFOG00000007450)	SV2A (ENSGFOG00000007454)	ENSGFOG00000007463	OTUD7B (ENSGFOG00000007466)	VPS45 (ENSGFOG00000007475)	PLEKHO1 (ENSGFOG00000007477)	ANP32E (ENSGFOG00000007486)	APH1A (ENSGFOG00000007489)	PRPF3 (ENSGFOG00000007494) #8	ENSGFOG00000007506 #9	CTSK (ENSGFOG00000007554) #19	ARNT (ENSGFOG00000007566) #20	SETDB1 (ENSGFOG00000007653) #22	CERS2 (ENSGFOG00000007678) #23	PRUNE1 (ENSGFOG00000007714) #26	ENSGFOG00000008349 #25	MLLT11 (ENSGFOG00000008360) #32	ARHGEF2 (ENSGFOG00000008683)	ENSGFOG00000008698 #18	RPS27 (ENSGFOG00000008709)	NDUFS2 (ENSGFOG00000008715)
Neognathae_c	ANCESTRAL SPECIES	36	ENSGT00730000111185	ENSGT00390000005869.a	ENSGT00390000014273.b	ENSGT00940000164422	ENSGT00940000158423	ENSGT00940000157203	ENSGT00390000002799	ENSGT00390000013847	ENSGT01030000234539.a.a.b.a.a	ENSGT00530000063074.a	ENSGT00940000158341	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734.g	ENSGT00390000017503	ENSGT00940000154703	ENSGT00990000206813	ENSGT00530000064050
Kakapo	MODERN SPECIES	60	ENSSHBG00005006733	VPS45 (ENSSHBG00005006666)	PLEKHO1 (ENSSHBG00005006648)	ANP32E (ENSSHBG00005006621)	ENSSHBG00005006579	ARHGEF11 (ENSSHBG00005006414)	ETV3L (ENSSHBG00005006226)	ETV3 (ENSSHBG00005006200)	ENSSHBG00005006169	KIRREL1 (ENSSHBG00005006115)	ENSSHBG00005006090	ENSSHBG00005006069	CTSS (ENSSHBG00005006037) #18	CTSK (ENSSHBG00005006020) #19	ARNT (ENSSHBG00005005821) #20	SETDB1 (ENSSHBG00005016514) #22	CERS2 (ENSSHBG00005016507) #23	MINDY1 (ENSSHBG00005016500) #25	PRUNE1 (ENSSHBG00005016494) #26	CADM3 (ENSSHBG00005016488)	ENSSHBG00005016484	ENSSHBG00005016482	IGSF9 (ENSSHBG00005016477)	TAGLN2 (ENSSHBG00005016474)	CFAP45 (ENSSHBG00005016470)	VSIG8 (ENSSHBG00005016466)	CFAP126 (ENSSHBG00005016463)	SDHC (ENSSHBG00005016460)	MPZ (ENSSHBG00005016457)	NR1I3 (ENSSHBG00005016450)	TOMM40L (ENSSHBG00005016446)
Golden eagle	MODERN SPECIES	25	LIX1L (ENSACCG00020002309)	PEX11B (ENSACCG00020002287)	ENSACCG00020002265	ITGA10 (ENSACCG00020002214)	RNF115 (ENSACCG00020002154)	POLR3C (ENSACCG00020002120)	NUDT17 (ENSACCG00020002095)	PIAS3 (ENSACCG00020002050)	ANKRD35 (ENSACCG00020001982)	ARHGEF2 (ENSACCG00020001874)	ENSACCG00020001764	CTSS (ENSACCG00020001709) #18	CTSK (ENSACCG00020001655) #19	ARNT (ENSACCG00020001572) #20	ENSACCG00020001538	SETDB1 (ENSACCG00020001501) #22	CERS2 (ENSACCG00020001469) #23	MINDY1 (ENSACCG00020001441) #25	PRUNE1 (ENSACCG00020001410) #26	BNIPL (ENSACCG00020001318) #27	CDC42SE1 (ENSACCG00020001273) #30	MLLT11 (ENSACCG00020001253) #32	GABPB2 (ENSACCG00020001233) #33	SEMA6C (ENSACCG00020001201) #34	LYSMD1 (ENSACCG00020001168) #36	SCNM1 (ENSACCG00020001155) #37	TMOD4 (ENSACCG00020001121)	VPS72 (ENSACCG00020001095)	PIP5K1A (ENSACCG00020001051)	ENSACCG00020001023	PSMD4 (ENSACCG00020001008)
Galloanserae	ANCESTRAL SPECIES	36	ENSGT00940000161732	ENSGT00940000157244	ENSGT00940000161509	ENSGT00940000155399	ENSGT00940000162656	ENSGT00410000026290.i	ENSGT00940000154566	ENSGT00390000002390.b	ENSGT00390000005131	ENSGT00570000079224	ENSGT00390000005125	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703	ENSGT00530000064050	ENSGT00960000189065	ENSGT00940000156524
Phasianidae	ANCESTRAL SPECIES	34										ENSGT01050000244808.E	ENSGT00390000005125	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703	ENSGT00530000064050	ENSGT00960000189065	ENSGT00940000156524
Phasianidae_b	ANCESTRAL SPECIES	31	ENSGT01070000256568	ENSGT00390000008196	ENSGT00940000155545.a	ENSGT00390000008744	ENSGT00940000158549.v	ENSGT00940000164842	ENSGT00940000160966	ENSGT00390000009529	ENSGT00390000003894	ENSGT01050000244808.E	ENSGT00390000005125	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703	ENSGT00530000064050	ENSGT00940000156524	ENSGT00550000074892
Chicken	MODERN SPECIES	17	ENSGALG00010027528	UFC1 (ENSGALG00010027531)	USP21 (ENSGALG00010027536)	PPOX (ENSGALG00010027540)	B4GALT3 (ENSGALG00010027547)	ENSGALG00010027554	ADAMTS4 (ENSGALG00010027561)	NDUFS2 (ENSGALG00010027570)	FCER1G (ENSGALG00010027575)	ENSGALG00010027582	SSR2 (ENSGALG00010028760)	CTSS (ENSGALG00010028761) #18	CTSK (ENSGALG00010028763) #19	ARNT (ENSGALG00010028764) #20	ENSGALG00010028571	SETDB1 (ENSGALG00010028575) #22	CERS2 (ENSGALG00010028577) #23	PRUNE1 (ENSGALG00010028580) #26	MINDY1 (ENSGALG00010028585) #25	ENSGALG00010028590 #30	MLLT11 (ENSGALG00010028782) #32	GABPB2 (ENSGALG00010028591) #33	SEMA6C (ENSGALG00010028592) #34	LYSMD1 (ENSGALG00010028594) #36	SCNM1 (ENSGALG00010028595) #37	TMOD4 (ENSGALG00010028598)	VPS72 (ENSGALG00010028599)	PIP5K1A (ENSGALG00010028871)	PSMD4 (ENSGALG00010028600)	ZNF687 (ENSGALG00010028602)	PI4KB (ENSGALG00010028604)
Turkey	MODERN SPECIES	19	ENSMGAG00000000905	ENSMGAG00000013116	ENSMGAG00000019882	ENSMGAG00000007340	ENSMGAG00000021173	ENSMGAG00000002287	TAGLN2 (ENSMGAG00000018941)	ENSMGAG00000018685	ENSMGAG00000022369	ENSMGAG00000020744	ENSMGAG00000000928	CTSS (ENSMGAG00000000937) #18	CTSK (ENSMGAG00000016914) #19	ARNT (ENSMGAG00000000943) #20	ENSMGAG00000021970	SETDB1 (ENSMGAG00000001018) #22	MINDY1 (ENSMGAG00000001119) #25	PRUNE1 (ENSMGAG00000006750) #26	ENSMGAG00000022302 #30	ENSMGAG00000001137	RFX5 (ENSMGAG00000001126)	PI4KB (ENSMGAG00000001065)	ENSMGAG00000020013	PSMD4 (ENSMGAG00000001020)	PIP5K1A (ENSMGAG00000001167)	VPS72 (ENSMGAG00000001132)	ENSMGAG00000001323	TMOD4 (ENSMGAG00000001123)	ENSMGAG00000018999 #34	GABPB2 (ENSMGAG00000001113) #33	MLLT11 (ENSMGAG00000018150) #32
Japanese quail	MODERN SPECIES	17	CADM3 (ENSCJPG00005015173)	ACKR1 (ENSCJPG00005015175)	ENSCJPG00005015177	DUSP23 (ENSCJPG00005015178)	IGSF9 (ENSCJPG00005015180)	TAGLN2 (ENSCJPG00005015182)	CFAP45 (ENSCJPG00005015183)	VSIG8 (ENSCJPG00005015184)	ENSCJPG00005015185	SSR2 (ENSCJPG00005015186)	CTSS (ENSCJPG00005015187) #18	ARNT (ENSCJPG00005015188) #20	ENSCJPG00005015249	ENSCJPG00005015251	ENSCJPG00005015255	SETDB1 (ENSCJPG00005015256) #22	CERS2 (ENSCJPG00005015257) #23	MINDY1 (ENSCJPG00005015258) #25	PRUNE1 (ENSCJPG00005015259) #26	CDC42SE1 (ENSCJPG00005015260) #30	MLLT11 (ENSCJPG00005015261) #32	ENSCJPG00005015262 #33	SEMA6C (ENSCJPG00005015263) #34	ENSCJPG00005015264 #36	ENSCJPG00005015265 #37	TMOD4 (ENSCJPG00005015266)	VPS72 (ENSCJPG00005015267)	PIP5K1A (ENSCJPG00005015268)	PSMD4 (ENSCJPG00005015269)	ENSCJPG00005015273	ZNF687 (ENSCJPG00005015276)
Anatidae	ANCESTRAL SPECIES	76									ENSGT00390000002390.b	ENSGT00390000005131	ENSGT00570000079224	ENSGT00390000005125	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000158641 #34	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503	ENSGT00940000154703	ENSGT00530000064050	ENSGT00960000189065	ENSGT00940000156524	ENSGT00550000074892
Duck	MODERN SPECIES	17	ANP32E (ENSAPLG00000002620)	ENSAPLG00000020034	CADM3 (ENSAPLG00000017996)	ACKR1 (ENSAPLG00000025585)	ENSAPLG00000001080	ENSAPLG00000017213	DUSP23 (ENSAPLG00000005043)	IGSF9 (ENSAPLG00000027030)	PIP5K1A (ENSAPLG00000015266)	TMEM79 (ENSAPLG00000028836)	CCT3 (ENSAPLG00000009108)	SSR2 (ENSAPLG00000012456)	CTSS (ENSAPLG00000012624) #18	CTSK (ENSAPLG00000012768) #19	ARNT (ENSAPLG00000013397) #20	SETDB1 (ENSAPLG00000013908) #22	ENSAPLG00000014024	CERS2 (ENSAPLG00000014026) #23	PRUNE1 (ENSAPLG00000014429) #26	CDC42SE1 (ENSAPLG00000014686) #30	GABPB2 (ENSAPLG00000014691) #33	ENSAPLG00000024016 #34	ZNF687 (ENSAPLG00000002073)	PI4KB (ENSAPLG00000002437)	RFX5 (ENSAPLG00000027459)	ENSAPLG00000002903	ENSAPLG00000010148	POGZ (ENSAPLG00000009926)	PSMB4 (ENSAPLG00000009850)	TUFT1 (ENSAPLG00000009480)	ENSAPLG00000009473
Pink-footed goose	MODERN SPECIES	365									TMEM79 (ENSABRG00000006790)	GLMP (ENSABRG00000006796)	CCT3 (ENSABRG00000006805)	SSR2 (ENSABRG00000006819)	CTSS (ENSABRG00000006843) #18	CTSK (ENSABRG00000006853) #19	ARNT (ENSABRG00000006945) #20	SETDB1 (ENSABRG00000008426) #22	ENSABRG00000008437	CERS2 (ENSABRG00000008443) #23	MINDY1 (ENSABRG00000008453) #25	PRUNE1 (ENSABRG00000008460) #26	CDC42SE1 (ENSABRG00000008466) #30	MLLT11 (ENSABRG00000008478) #32	GABPB2 (ENSABRG00000008489) #33	SEMA6C (ENSABRG00000008508) #34	SCNM1 (ENSABRG00000008557) #37	TMOD4 (ENSABRG00000008719)	VPS72 (ENSABRG00000008724)	PIP5K1A (ENSABRG00000008738)	PSMD4 (ENSABRG00000008769)	ENSABRG00000008778	ZNF687 (ENSABRG00000008791)
Australian saltwater crocodile	MODERN SPECIES	25	MSTO1 (ENSCPRG00005003685)	ENSCPRG00005003828	SYT11 (ENSCPRG00005004624)	RIT1 (ENSCPRG00005004646)	KHDC4 (ENSCPRG00005004670)	ENSCPRG00005004829	ENSCPRG00005004833	CERS2 (ENSCPRG00005004837) #23	MINDY1 (ENSCPRG00005004850) #25	PRUNE1 (ENSCPRG00005004862) #26	ENSCPRG00005004871	S100A10 (ENSCPRG00005004877)	THEM4 (ENSCPRG00005004889)	CTSK (ENSCPRG00005004905) #19	ARNT (ENSCPRG00005005374) #20	SETDB1 (ENSCPRG00005007301) #22	ENSCPRG00005007482	ENSCPRG00005007485	GABPB2 (ENSCPRG00005007492) #33	ENSCPRG00005007502	SEMA6C (ENSCPRG00005007512) #34	ENSCPRG00005007522	TNFAIP8L2 (ENSCPRG00005007532) #35	LYSMD1 (ENSCPRG00005007534) #36	SCNM1 (ENSCPRG00005007538) #37	TMOD4 (ENSCPRG00005007544)	VPS72 (ENSCPRG00005007553)	PIP5K1A (ENSCPRG00005007576)	PSMD4 (ENSCPRG00005007726)	ENSCPRG00005008056	ZNF687 (ENSCPRG00005008064)
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00500000045038 #7	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000154969.a	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000154197	ENSGT00940000160047	ENSGT00940000163537	ENSGT00940000161521	ENSGT00940000154996.a.a	ENSGT00940000165314	ENSGT00940000159364	ENSGT00940000161581
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00950000183094.a #9	ENSGT00940000154969.a	ENSGT00390000006215 #11	ENSGT01090000260003.a.b.b.a.a.a.b.b.b #14	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.a #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176.l #18	ENSGT00940000155176.k.a.a #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT01030000234540.B.a.a.c.a	ENSGT00940000154197	ENSGT00940000160047	ENSGT00940000163537	ENSGT00940000161521	ENSGT00940000154996.a.a	ENSGT00940000165314	ENSGT00940000159364
Emydidae	ANCESTRAL SPECIES	18	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000154969.a	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.a #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176.l #18	ENSGT00940000155176.k.a.a #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT01030000234540.B.a.a.c.a	ENSGT00940000154197	ENSGT00940000160047	ENSGT00940000163537	ENSGT00940000161521	ENSGT00940000154996.a.a	ENSGT00940000165314	ENSGT00940000159364
Three-toed box turtle	MODERN SPECIES	102	CIART (ENSTMTG00000003619)	MRPS21 (ENSTMTG00000003635) #7	PRPF3 (ENSTMTG00000003651) #8	RPRD2 (ENSTMTG00000003690) #9	ENSTMTG00000003936	ECM1 (ENSTMTG00000007038) #11	ENSTMTG00000007077 #14	ENSA (ENSTMTG00000007092) #15	ENSTMTG00000007103	GOLPH3L (ENSTMTG00000007124) #16	ENSTMTG00000007143 #17	ENSTMTG00000007160 #18	CTSK (ENSTMTG00000007192) #19	ARNT (ENSTMTG00000007214) #20	ENSTMTG00000007315	SETDB1 (ENSTMTG00000007340) #22	CERS2 (ENSTMTG00000007401) #23	ANXA9 (ENSTMTG00000007428) #24	MINDY1 (ENSTMTG00000007470) #25	PRUNE1 (ENSTMTG00000007499) #26	BNIPL (ENSTMTG00000007525) #27	CDC42SE1 (ENSTMTG00000007541) #30	MLLT11 (ENSTMTG00000007551) #32	ENSTMTG00000007558	S100A10 (ENSTMTG00000007571)	THEM4 (ENSTMTG00000007589)	C2CD4D (ENSTMTG00000007644)	RORC (ENSTMTG00000007685)	ENSTMTG00000007700	ENSTMTG00000007710	TDRKH (ENSTMTG00000007731)
painted turtle	MODERN SPECIES	738	PRPF3 (ENSCPBG00000008216) #8	RPRD2 (ENSCPBG00000008228) #9	ENSCPBG00000008240	ECM1 (ENSCPBG00000008276) #11	ADAMTSL4 (ENSCPBG00000008567) #13	ENSCPBG00000008588 #14	ENSA (ENSCPBG00000008598) #15	ENSCPBG00000008603	GOLPH3L (ENSCPBG00000008616) #16	HORMAD1 (ENSCPBG00000008626) #17	ENSCPBG00000008637 #18	ENSCPBG00000008648 #18	CTSK (ENSCPBG00000008661) #19	ARNT (ENSCPBG00000008682) #20	ENSCPBG00000008707	SETDB1 (ENSCPBG00000008716) #22	CERS2 (ENSCPBG00000008726) #23	ANXA9 (ENSCPBG00000008736) #24	MINDY1 (ENSCPBG00000008750) #25	PRUNE1 (ENSCPBG00000008763) #26	BNIPL (ENSCPBG00000008771) #27	CDC42SE1 (ENSCPBG00000008784) #30	MLLT11 (ENSCPBG00000008788) #32	S100A10 (ENSCPBG00000008792)	THEM4 (ENSCPBG00000008796)	C2CD4D (ENSCPBG00000008801)	RORC (ENSCPBG00000008805)	ENSCPBG00000008812	ENSCPBG00000008815	TDRKH (ENSCPBG00000008824)	OAZ3 (ENSCPBG00000008836)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000154969.a	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176.l #18	ENSGT00940000155176.k.a.a #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT01030000234540.B.a.a.c.a	ENSGT00940000154197	ENSGT00940000160047	ENSGT00940000163537	ENSGT00940000161521	ENSGT00940000154996.a.a	ENSGT00940000158358.f	ENSGT00940000159364
Goode s thornscrub tortoise	MODERN SPECIES	16	PRPF3 (ENSGEVG00005014482) #8	RPRD2 (ENSGEVG00005014526) #9	ENSGEVG00005014603	ECM1 (ENSGEVG00005014720) #11	ADAMTSL4 (ENSGEVG00005015036) #13	MCL1 (ENSGEVG00005016126) #14	ENSA (ENSGEVG00005016162) #15	ENSGEVG00005016208	GOLPH3L (ENSGEVG00005016244) #16	ENSGEVG00005016267 #17	ENSGEVG00005016308 #18	CTSS (ENSGEVG00005016424) #18	CTSK (ENSGEVG00005016496) #19	ARNT (ENSGEVG00005016585) #20	ENSGEVG00005016666	SETDB1 (ENSGEVG00005016733) #22	CERS2 (ENSGEVG00005016787) #23	ANXA9 (ENSGEVG00005016835) #24	MINDY1 (ENSGEVG00005016943) #25	PRUNE1 (ENSGEVG00005016967) #26	BNIPL (ENSGEVG00005017095) #27	CDC42SE1 (ENSGEVG00005017444) #30	MLLT11 (ENSGEVG00005017456) #32	ENSGEVG00005017489	S100A10 (ENSGEVG00005017611)	THEM4 (ENSGEVG00005017627)	C2CD4D (ENSGEVG00005017642)	RORC (ENSGEVG00005017752)	ENSGEVG00005018375	TDRKH (ENSGEVG00005018412)	OAZ3 (ENSGEVG00005018446)
Abingdon island giant tortoise	MODERN SPECIES	2613				ENSA (ENSCABG00000006924) #15	ENSCABG00000006927	GOLPH3L (ENSCABG00000006929) #16	HORMAD1 (ENSCABG00000006934) #17	ENSCABG00000006945 #18	ENSCABG00000006966 #18	ENSCABG00000006975 #18	ENSCABG00000006978 #18	ENSCABG00000006981 #18	CTSK (ENSCABG00000006984) #19	ARNT (ENSCABG00000007049) #20	ENSCABG00000008222	SETDB1 (ENSCABG00000008224) #22	CERS2 (ENSCABG00000008225) #23	ANXA9 (ENSCABG00000008227) #24	MINDY1 (ENSCABG00000008231) #25	PRUNE1 (ENSCABG00000008232) #26	BNIPL (ENSCABG00000008371) #27	CDC42SE1 (ENSCABG00000008376) #30	MLLT11 (ENSCABG00000008380) #32	ENSCABG00000008386	S100A10 (ENSCABG00000008407)	THEM4 (ENSCABG00000008409)	C2CD4D (ENSCABG00000008410)	RORC (ENSCABG00000008413)	ENSCABG00000008763	ENSCABG00000008764	TDRKH (ENSCABG00000008766)
Chinese turtle	MODERN SPECIES	1774														CTSK (ENSPSIG00000010266) #19	ARNT (ENSPSIG00000008480) #20	SETDB1 (ENSPSIG00000008407) #22	CERS2 (ENSPSIG00000008297) #23	KHDC4 (ENSPSIG00000008263)	RIT1 (ENSPSIG00000007923)	SYT11 (ENSPSIG00000007838)	ENSPSIG00000007306	MSTO1 (ENSPSIG00000006370)	DAP3 (ENSPSIG00000005834)	ASH1L (ENSPSIG00000005574)	FDPS (ENSPSIG00000005249)
Lepidosauria	ANCESTRAL SPECIES	36	ENSGT00950000183065.B	ENSGT00940000162698	ENSGT00390000000698	ENSGT00940000160649	ENSGT00390000014244.jb.b	ENSGT00390000014244.jb.a	ENSGT01050000244970.a	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Episquamata	ANCESTRAL SPECIES	17	ENSGT00940000162698	ENSGT00390000000698	ENSGT00940000160649	ENSGT00390000014244.jb.b	ENSGT00390000014244.jb.a	ENSGT01050000244970.a	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Toxicofera	ANCESTRAL SPECIES	27	ENSGT00940000162698	ENSGT00390000000698	ENSGT00940000160649	ENSGT00390000014244.jb.b	ENSGT00390000014244.jb.a	ENSGT01050000244970.a	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Elapidae	ANCESTRAL SPECIES	25	ENSGT00390000000698	ENSGT00940000160649	ENSGT00390000014244.jb.b	ENSGT00390000014244.jb.a.e.a	ENSGT00390000014244.jb.a.f	ENSGT00390000014244.jb.a.e.b	ENSGT01050000244970.a	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.`c #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Elapidae_a	ANCESTRAL SPECIES	51	ENSGT00390000000698	ENSGT00940000160649	ENSGT00390000014244.jb.b	ENSGT00390000014244.jb.a.e.a	ENSGT00390000014244.jb.a.f	ENSGT00390000014244.jb.a.e.b	ENSGT01050000244970.a	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413.`c #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641.f #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Acanthophiinae	ANCESTRAL SPECIES	250																ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	542																ENSPTXG00000014165 #22	ENSPTXG00000014169 #23
Eastern brown snake	MODERN SPECIES	541																ENSPTXG00000014140 #22	ENSPTXG00000014163 #23
Blue-lipped sea krait	MODERN SPECIES	2551				ENSLLTG00000014261	ENSLLTG00000014281	ENSLLTG00000014316	ENSLLTG00000014326	MCL1 (ENSLLTG00000014331) #14	ENSA (ENSLLTG00000000208) #15	ENSLLTG00000000219	GOLPH3L (ENSLLTG00000000241) #16	HORMAD1 (ENSLLTG00000000276) #17	CTSS (ENSLLTG00000000316) #18	CTSK (ENSLLTG00000000356) #19	ARNT (ENSLLTG00000000401) #20	SETDB1 (ENSLLTG00000000506) #22	CERS2 (ENSLLTG00000000539) #23	ENSLLTG00000000572 #24	MINDY1 (ENSLLTG00000000613) #25	PRUNE1 (ENSLLTG00000000636) #26	BNIPL (ENSLLTG00000000649) #27	ENSLLTG00000000665 #30	MLLT11 (ENSLLTG00000000680) #32	GABPB2 (ENSLLTG00000000688) #33	ENSLLTG00000000706	ENSLLTG00000000733 #34
Indian cobra	MODERN SPECIES	17	ENSNNAG00000004809	POGZ (ENSNNAG00000004828)	ENSNNAG00000004896	ENSNNAG00000004918	ENSNNAG00000004944	ENSNNAG00000005000	MCL1 (ENSNNAG00000005115) #14	ENSNNAG00000005128	ENSA (ENSNNAG00000005148) #15	ENSNNAG00000005158	GOLPH3L (ENSNNAG00000005180) #16	HORMAD1 (ENSNNAG00000005199) #17	CTSS (ENSNNAG00000005282) #18	CTSK (ENSNNAG00000005315) #19	ARNT (ENSNNAG00000005374) #20	SETDB1 (ENSNNAG00000005428) #22	ENSNNAG00000005471 #24	MINDY1 (ENSNNAG00000005531) #25	PRUNE1 (ENSNNAG00000005573) #26	CDC42SE1 (ENSNNAG00000005605) #30	MLLT11 (ENSNNAG00000005617) #32	ENSNNAG00000005625	SEMA6C (ENSNNAG00000005678) #34	TNFAIP8L2 (ENSNNAG00000006149) #35	LYSMD1 (ENSNNAG00000006154) #36	SCNM1 (ENSNNAG00000006161) #37	TMOD4 (ENSNNAG00000006178)	VPS72 (ENSNNAG00000006200)	PIP5K1A (ENSNNAG00000006229)	PSMD4 (ENSNNAG00000006301)	ZNF687 (ENSNNAG00000006339)
Lizard	MODERN SPECIES	1486														ARNT (ENSACAG00000011254) #20	ENSACAG00000034887	SETDB1 (ENSACAG00000011992) #22	CERS2 (ENSACAG00000011997) #23
Laterata	ANCESTRAL SPECIES	35	ENSGT00940000162698	ENSGT00390000000698	ENSGT00940000160649	ENSGT00390000014244.jb.b	ENSGT00390000014244.jb.a	ENSGT01050000244970.a	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759 #19	ENSGT00940000157585 #20	ENSGT01040000240780	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000161835 #24	ENSGT00390000016607.b #25	ENSGT00450000040262 #26	ENSGT00940000161723 #27	ENSGT00940000160112 #30	ENSGT00390000009895 #32	ENSGT00940000156794 #33	ENSGT00940000154412.B.a	ENSGT00940000158641 #34	ENSGT00390000003488.b #35	ENSGT00940000160002 #36	ENSGT00390000010811 #37	ENSGT00940000158734	ENSGT00390000017503
Common wall lizard	MODERN SPECIES	7	POGZ (ENSPMRG00000020835)	ENSPMRG00000020855	SELENBP1 (ENSPMRG00000020868)	ENSPMRG00000020892	ENSPMRG00000020904	MCL1 (ENSPMRG00000020907) #14	ENSA (ENSPMRG00000020911) #15	ENSPMRG00000020917	GOLPH3L (ENSPMRG00000020922) #16	ENSPMRG00000020926	HORMAD1 (ENSPMRG00000020931) #17	CTSS (ENSPMRG00000020938) #18	CTSK (ENSPMRG00000020943) #19	ARNT (ENSPMRG00000020956) #20	ENSPMRG00000020987	SETDB1 (ENSPMRG00000020991) #22	CERS2 (ENSPMRG00000021000) #23	ENSPMRG00000021009	ENSPMRG00000021015 #24	MINDY1 (ENSPMRG00000021029) #25	PRUNE1 (ENSPMRG00000016487) #26	BNIPL (ENSPMRG00000016496) #27	CDC42SE1 (ENSPMRG00000016504) #30	MLLT11 (ENSPMRG00000016508) #32	GABPB2 (ENSPMRG00000016512) #33	ENSPMRG00000016518	SEMA6C (ENSPMRG00000016528) #34	ENSPMRG00000016544	TNFAIP8L2 (ENSPMRG00000016547) #35	LYSMD1 (ENSPMRG00000016550) #36	SCNM1 (ENSPMRG00000016554) #37
Argentine black and white tegu	MODERN SPECIES	80	ENSSMRG00000021266	ENSSMRG00000021265	POGZ (ENSSMRG00000021264)	ENSSMRG00000021263	ENSSMRG00000021250	ENSSMRG00000021249	RFX5 (ENSSMRG00000021248)	MCL1 (ENSSMRG00000021247) #14	ENSA (ENSSMRG00000021245) #15	ENSSMRG00000021244	GOLPH3L (ENSSMRG00000021243) #16	HORMAD1 (ENSSMRG00000021241) #17	CTSS (ENSSMRG00000021239) #18	CTSK (ENSSMRG00000021238) #19	ARNT (ENSSMRG00000021235) #20	SETDB1 (ENSSMRG00000021234) #22	CERS2 (ENSSMRG00000021232) #23	ENSSMRG00000021231 #24	MINDY1 (ENSSMRG00000021229) #25	PRUNE1 (ENSSMRG00000021226) #26	BNIPL (ENSSMRG00000021224) #27	CDC42SE1 (ENSSMRG00000021222) #30	ENSSMRG00000021221 #32	GABPB2 (ENSSMRG00000021219) #33	ENSSMRG00000021217	SEMA6C (ENSSMRG00000021205) #34	ENSSMRG00000021202	ENSSMRG00000021199	ENSSMRG00000021197	CFAP45 (ENSSMRG00000021196)	TAGLN2 (ENSSMRG00000021195)
tuatara	MODERN SPECIES	157	SNX27 (ENSSPUG00000002477)	TUFT1 (ENSSPUG00000002499)	ENSSPUG00000002546	PSMB4 (ENSSPUG00000002593)	POGZ (ENSSPUG00000002680)	ENSSPUG00000002696	ENSSPUG00000002704	ENSSPUG00000002712	MCL1 (ENSSPUG00000002720) #14	ENSA (ENSSPUG00000002726) #15	GOLPH3L (ENSSPUG00000002733) #16	HORMAD1 (ENSSPUG00000002757) #17	CTSS (ENSSPUG00000002914) #18	CTSK (ENSSPUG00000002928) #19	ARNT (ENSSPUG00000002948) #20	SETDB1 (ENSSPUG00000002969) #22	CERS2 (ENSSPUG00000003025) #23	MINDY1 (ENSSPUG00000003045) #25	PRUNE1 (ENSSPUG00000003052) #26	BNIPL (ENSSPUG00000003069) #27	CDC42SE1 (ENSSPUG00000003078) #30	MLLT11 (ENSSPUG00000003088) #32	GABPB2 (ENSSPUG00000003112) #33
Anura	ANCESTRAL SPECIES	182	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000154969.a	ENSGT00390000006215 #11	ENSGT00940000161136 #13	ENSGT01090000260003.a.b.b.a.a.a.b.b #14	ENSGT00940000155413 #15	ENSGT00950000183103.d.a.a	ENSGT00390000007153.a.b #16	ENSGT00390000018130.a.a.a #17	ENSGT00940000155176 #18	ENSGT00940000157759.b #19	ENSGT00940000157759.a #19	ENSGT00940000157585 #20	ENSGT00960000186669	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23
Frog	MODERN SPECIES	8	ENSXETG00000045174	XB5886928 [provisional] (ENSXETG00000030596)	XB5856184 [provisional:crp] (ENSXETG00000046752)	crp.4 (ENSXETG00000027272)	ENSXETG00000037685 #18	ENSXETG00000045396 #18	ENSXETG00000046147	crp.1 (ENSXETG00000003976)	ENSXETG00000045016	ENSXETG00000049438	ENSXETG00000037802 #18	ENSXETG00000035861 #18	ENSXETG00000047960	arnt (ENSXETG00000008942) #20	ENSXETG00000045572	setdb1 (ENSXETG00000008936) #22	cers2 (ENSXETG00000038346) #23	anxa9 (ENSXETG00000031026)	ENSXETG00000026666 #18	ENSXETG00000035955 #18	ctsk (ENSXETG00000035558) #19	ENSXETG00000048153	XB986811 [provisional:ctsk] (ENSXETG00000008916) #19	ctss (ENSXETG00000008914) #18	hormad1 (ENSXETG00000008913) #17	golph3l (ENSXETG00000008912) #16	onecut1.2 (ENSXETG00000040174)	ensa (ENSXETG00000026684) #15	mcl1 (ENSXETG00000008910) #14	ENSXETG00000047405	adamtsl4 (ENSXETG00000018086) #13
Leishan spiny toad	MODERN SPECIES	4	ENSLLEG00000026493 #14	ADAMTSL4 (ENSLLEG00000026357) #13	ENSA (ENSLLEG00000026308) #15	ENSLLEG00000026281	ENSLLEG00000026268	ENSLLEG00000026243	ENSLLEG00000026228	ENSLLEG00000026212	ENSLLEG00000026186	GOLPH3L (ENSLLEG00000025739) #16	CTSS (ENSLLEG00000025617) #18	ENSLLEG00000025538 #19	ENSLLEG00000025464 #19	ARNT (ENSLLEG00000025310) #20	CTXND1 (ENSLLEG00000025268)	SETDB1 (ENSLLEG00000024673) #22	ENSLLEG00000024585	ENSLLEG00000024540	ENSLLEG00000024492	ENSLLEG00000024452	ENSLLEG00000024420	ENSLLEG00000024371	ENSLLEG00000024319	ENSLLEG00000024267	ENSLLEG00000024244	ENSLLEG00000024205	ENSLLEG00000024161	ENSLLEG00000024071	CERS2 (ENSLLEG00000023791) #23	ENSLLEG00000023770	ENSLLEG00000023756
Coelacanth	MODERN SPECIES	1495																SETDB1 (ENSLACG00000011159) #22	CERS2 (ENSLACG00000010852) #23	ENSLACG00000010189	MINDY1 (ENSLACG00000009951) #25	PRUNE1 (ENSLACG00000009440) #26	bnipl (ENSLACG00000009059)	ADAMTSL4 (ENSLACG00000008278) #13	ENSLACG00000007145 #11	UBAP2L (ENSLACG00000003117)	C1orf43 (ENSLACG00000002718)	ENSLACG00000002090
Actinopterygii	ANCESTRAL SPECIES	223											ENSGT00940000158423	ENSGT00940000157203	ENSGT00390000002799	ENSGT00940000157585 #20	ENSGT00960000186669	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360	ENSGT00390000011497 #8	ENSGT00950000183094.a #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119
Neopterygii	ANCESTRAL SPECIES	45	ENSGT00940000171931	ENSGT00940000165956	ENSGT00940000162071	ENSGT00940000161355	ENSGT00940000159919	ENSGT00390000007801	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157585 #20	ENSGT00940000157471 #22	ENSGT01030000234515.a.b.a.a #23	ENSGT00940000164119	ENSGT00940000154201.a.a.b.d	ENSGT00940000154716	ENSGT00940000161136 #13	ENSGT00940000159348	ENSGT00950000183094.a.m #9	ENSGT00390000011497 #8	ENSGT00390000018360	ENSGT00940000156893	ENSGT00390000002049.d	ENSGT01030000234542.b.b.a.a.b	ENSGT00940000157006	ENSGT00390000006096.a.b	ENSGT00940000159154
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	38	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000164374.A	ENSGT00940000154947.k	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197
Clupeocephala	ANCESTRAL SPECIES		ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000164374.A	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197
Otomorpha	ANCESTRAL SPECIES	14	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000164374.A.c.b	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Clupeiformes	ANCESTRAL SPECIES		ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000164374.A.c.b.b	ENSGT00940000164374.A.c.b.a	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Denticle herring	MODERN SPECIES	15	GBA1 (ENSDCDG00000004773)	rnf115a (ENSDCDG00000004727)	polr3c (ENSDCDG00000004716)	ITGA10 (ENSDCDG00000004565)	polr3c (ENSDCDG00000004503)	ITGA10 (ENSDCDG00000004491)	crabp2a (ENSDCDG00000004489)	ENSDCDG00000004488	ca14 (ENSDCDG00000004486)	CIART (ENSDCDG00000004484)	prpf3 (ENSDCDG00000004010) #8	RPRD2 (ENSDCDG00000003973) #9	ENSDCDG00000003843	CERS2 (ENSDCDG00000003829) #23	arnt (ENSDCDG00000003664) #20	setdb1b (ENSDCDG00000003641) #22	trim108 (ENSDCDG00000003637)	trim108 (ENSDCDG00000003630)	clk2b (ENSDCDG00000002843)	ENSDCDG00000002806	cyp11c1 (ENSDCDG00000002499)	pklr (ENSDCDG00000002333)	ENSDCDG00000002327	zbtb7b (ENSDCDG00000002324)	ENSDCDG00000002322	khdc4 (ENSDCDG00000002319)	ENSDCDG00000002315	ENSDCDG00000002311	ENSDCDG00000002226	si:ch211-120k19.1 (ENSDCDG00000002219)	rpl18 (ENSDCDG00000002215)
Atlantic herring	MODERN SPECIES	2	rnf115a (ENSCHAG00000009059)	polr3c (ENSCHAG00000008491)	ITGA10 (ENSCHAG00000008460)	crabp2a (ENSCHAG00000008445)	ENSCHAG00000008428	ca14 (ENSCHAG00000008369)	CIART (ENSCHAG00000008352)	prpf3 (ENSCHAG00000008244) #8	RPRD2 (ENSCHAG00000008220) #9	ENSCHAG00000007077	ENSCHAG00000007023 #13	CELF3 (ENSCHAG00000007001)	CERS2 (ENSCHAG00000006978) #23	skp1 (ENSCHAG00000006968)	arnt (ENSCHAG00000006547) #20	setdb1b (ENSCHAG00000006237) #22	CXCR5 (ENSCHAG00000006226)	trim108 (ENSCHAG00000006119)	trim108 (ENSCHAG00000006001)	clk2b (ENSCHAG00000005172)	cyp11c1 (ENSCHAG00000004600)	ENSCHAG00000004556	pklr (ENSCHAG00000002526)	ENSCHAG00000002345	zbtb7b (ENSCHAG00000022741)	NDUFV1 (ENSCHAG00000022430)	khdc4 (ENSCHAG00000022406)	ENSCHAG00000022396	ENSCHAG00000022390	ENSCHAG00000022372	si:ch211-120k19.1 (ENSCHAG00000022350)
Otophysi	ANCESTRAL SPECIES	1	ENSGT00940000166466.f	ENSGT01060000249055	ENSGT00940000165956	ENSGT00940000158417.b	ENSGT00940000159107.j	ENSGT00940000154489.B.b	ENSGT00950000183065.B.e	ENSGT00510000047366	ENSGT00940000156178.B	ENSGT00940000164368.B	ENSGT00940000165692	ENSGT00940000165521.b	ENSGT00390000003062	ENSGT00950000182957.a.b	ENSGT00940000156524.b	ENSGT00940000157471.a #22	ENSGT00940000164374.A.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000159873	ENSGT00650000094956	ENSGT00940000165779	ENSGT00940000156904.a.b	ENSGT00940000158047	ENSGT00940000159733	ENSGT00560000077232.A.a.e	ENSGT00940000154370.d	ENSGT00940000161757	ENSGT00390000005284.b	ENSGT00940000163587.b	ENSGT00390000011918	ENSGT00530000067342
Characiphysae	ANCESTRAL SPECIES		ENSGT01060000249055	ENSGT00940000165956	ENSGT00940000158417.b	ENSGT00940000159107.j	ENSGT00940000154489.B.b	ENSGT00940000162698	ENSGT00950000183065.B.e	ENSGT00510000047366	ENSGT00940000156178.B	ENSGT00940000164368.B	ENSGT00940000165692	ENSGT00940000165521.b	ENSGT00390000003062	ENSGT00950000182957.a.b	ENSGT00940000156524.b	ENSGT00940000157471.a #22	ENSGT00940000164374.A.d	ENSGT00940000164374.A.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000159873	ENSGT00650000094956	ENSGT00940000165779	ENSGT00940000156904.a.b	ENSGT00940000158047	ENSGT00940000159733	ENSGT00560000077232.A.a.e	ENSGT00940000154370.d	ENSGT00940000161757	ENSGT00390000005284.b	ENSGT00940000163587.b	ENSGT00390000011918
Channel catfish	MODERN SPECIES		si:ch211-105c13.3 (ENSIPUG00000003941)	s100t (ENSIPUG00000003953)	chrnb2 (ENSIPUG00000003964)	She (ENSIPUG00000003990)	cgn (ENSIPUG00000004008)	tuft1a (ENSIPUG00000004029)	c1h1orf43 (ENSIPUG00000004083)	ENSIPUG00000004145	aqp10a (ENSIPUG00000004182)	atp8b2 (ENSIPUG00000004224)	IL6R (ENSIPUG00000004323)	ENSIPUG00000004362	riiad1 (ENSIPUG00000004407)	ENSIPUG00000004432	znf687 (ENSIPUG00000004461)	setdb1 (ENSIPUG00000004536) #22	trim39 (ENSIPUG00000004681)	cldc1 (ENSIPUG00000004712)	cops7a (ENSIPUG00000004727)	ENSIPUG00000004747	si:ch211-154o6.3 (ENSIPUG00000004767)	znf384b (ENSIPUG00000004803)	gnl1 (ENSIPUG00000004850)	ddr1 (ENSIPUG00000004879)	flot1 (ENSIPUG00000004962)	tubb (ENSIPUG00000005053)	mdc1 (ENSIPUG00000005078)	ENSIPUG00000005142	ENSIPUG00000005165	INO80E (ENSIPUG00000005183)	ENSIPUG00000005206
Characiphysae_b	ANCESTRAL SPECIES	15	ENSGT01060000249055	ENSGT00940000165956	ENSGT00940000158417.b	ENSGT00940000159107.j	ENSGT00940000154489.B.b	ENSGT00940000171210	ENSGT00950000183065.B.e	ENSGT00510000047366	ENSGT00940000156178.B	ENSGT00940000164368.B	ENSGT00940000165692	ENSGT00940000165521.b	ENSGT00390000003062	ENSGT00950000182957.a.b	ENSGT00940000156524.b	ENSGT00940000157471.a #22	ENSGT00940000164374.A.c.a.a.b	ENSGT00940000164374.A.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000159873	ENSGT00650000094956	ENSGT00940000165779	ENSGT00940000156904.a.b	ENSGT00940000158047	ENSGT00940000159733	ENSGT00560000077232.A.a.e	ENSGT00940000154370.d	ENSGT00940000161757	ENSGT00390000005284.b	ENSGT00940000163587.b	ENSGT00390000011918
Characoidei	ANCESTRAL SPECIES	28	ENSGT01060000249055	ENSGT00940000165956	ENSGT00940000158417.b	ENSGT00940000159107.j	ENSGT00940000154489.B.b	ENSGT00940000171210	ENSGT00950000183065.B.e	ENSGT00510000047366	ENSGT00940000156178.B	ENSGT00940000164368.B	ENSGT00940000165692	ENSGT00940000165521.b	ENSGT00390000003062	ENSGT00950000182957.a.b	ENSGT00940000156524.b	ENSGT00940000157471.a #22	ENSGT00940000164374.A.c.a.a.b	ENSGT00940000164374.A.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000159873	ENSGT00650000094956	ENSGT00940000165779	ENSGT00940000156904.a.b	ENSGT00940000158047	ENSGT00940000159733	ENSGT00560000077232.A.a.e	ENSGT00940000154370.d	ENSGT00940000161757	ENSGT00390000005284.b	ENSGT00940000163587.b	ENSGT00390000011918
Red-bellied piranha	MODERN SPECIES	116													ENSPNAG00000021756	ENSPNAG00000021734	znf687a (ENSPNAG00000021642)	setdb1b (ENSPNAG00000021617) #22	cldc1 (ENSPNAG00000021587)	ENSPNAG00000021544	trim108 (ENSPNAG00000021476)	cops7a (ENSPNAG00000021426)	ENSPNAG00000005795	si:ch211-154o6.3 (ENSPNAG00000021380)	znf384b (ENSPNAG00000021298)	gnl1 (ENSPNAG00000021257)	DDR1 (ENSPNAG00000021197)	flot1b (ENSPNAG00000021148)	ENSPNAG00000021095	mdc1 (ENSPNAG00000021066)	ENSPNAG00000021049	ENSPNAG00000021039	ino80e (ENSPNAG00000021014)
Mexicana tetra	MODERN SPECIES	2	s100a11 (ENSAMXG00000035272)	si:ch211-105c13.3 (ENSAMXG00000040438)	s100t (ENSAMXG00000040936)	CHRNB2 (ENSAMXG00000016297)	ENSAMXG00000016282	ENSAMXG00000029172	tuft1a (ENSAMXG00000016263)	ENSAMXG00000029684	zgc:123238 (ENSAMXG00000016250)	aqp10a (ENSAMXG00000016242)	ENSAMXG00000016234	ENSAMXG00000029667	ENSAMXG00000037802	ENSAMXG00000016204	znf687a (ENSAMXG00000016184)	setdb1b (ENSAMXG00000016168) #22	ENSAMXG00000030986	trim108 (ENSAMXG00000016153)	cldc1 (ENSAMXG00000040325)	cops7a (ENSAMXG00000033951)	ENSAMXG00000039621	ENSAMXG00000039066	ENSAMXG00000015059	ENSAMXG00000035014	ENSAMXG00000015183	ENSAMXG00000033686	PIK3R4 (ENSAMXG00000015278)	snrnp48 (ENSAMXG00000015309)	zgc:113232 (ENSAMXG00000015338)	cd83 (ENSAMXG00000029494)	ENSAMXG00000038999
Electric eel	MODERN SPECIES	33	si:dkey-26c10.5 (ENSEEEG00000012510)	zgc:92606 (ENSEEEG00000012508)	leng8 (ENSEEEG00000012507)	tpi1b (ENSEEEG00000012502)	lpcat3 (ENSEEEG00000012498)	CLSTN3 (ENSEEEG00000012479)	pex5 (ENSEEEG00000012453)	cdca3 (ENSEEEG00000012451)	gnb3a (ENSEEEG00000012387)	P3H3 (ENSEEEG00000012385)	usp5 (ENSEEEG00000012371)	ENSEEEG00000012363	cd4-1 (ENSEEEG00000012358)	ENSEEEG00000012356	znf687a (ENSEEEG00000012353)	setdb1b (ENSEEEG00000012348) #22	ENSEEEG00000012346	cldc1 (ENSEEEG00000012342)	cops7a (ENSEEEG00000012336)	si:ch211-154o6.3 (ENSEEEG00000012333)	znf384b (ENSEEEG00000012331)	gnl1 (ENSEEEG00000012321)	ENSEEEG00000012319
Cyprinoidei	ANCESTRAL SPECIES	13	ENSGT00940000166466.f.c	ENSGT01060000249055	ENSGT00940000165956	ENSGT00940000158417.b	ENSGT00940000159107.j	ENSGT00940000154489.B.b	ENSGT00950000183065.B.e	ENSGT00510000047366	ENSGT00940000156178.B	ENSGT00940000164368.B	ENSGT00940000165692	ENSGT00940000165521.b	ENSGT00390000003062	ENSGT00950000182957.a.b	ENSGT00940000156524.b	ENSGT00940000157471.a #22	ENSGT00940000164374.A.c.b	ENSGT00940000167550	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e	ENSGT00940000157155	ENSGT00940000159873	ENSGT00650000094956	ENSGT00940000165779	ENSGT00940000156904.a.b	ENSGT00940000158047	ENSGT00940000159733.o.b	ENSGT00560000077232.A.a.e	ENSGT00940000154370.d	ENSGT00940000161757	ENSGT00390000005284.b	ENSGT00940000163587.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	7	ENSGT00390000002996.b	ENSGT00730000111747.a.a	ENSGT00940000166466.f.c	ENSGT01060000249055.a.a	ENSGT00940000165956.c	ENSGT00940000158417.b.i	ENSGT00940000159107.j.b	ENSGT00940000154489.B.b.b	ENSGT00950000183065.B.e.e	ENSGT00510000047366.c	ENSGT00940000156178.B.a.a	ENSGT00940000165692.e.b.b	ENSGT00940000165521.b.e	ENSGT00390000003062	ENSGT00940000156524.b.a	ENSGT00940000157471.a.a #22	ENSGT00390000001745.b.b.a.b	ENSGT00940000164374.A.c.b.d	ENSGT00940000167550.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.a	ENSGT00940000157155	ENSGT00650000094956	ENSGT00940000165779.a	ENSGT00940000156904.a.b.b	ENSGT00940000158047.i	ENSGT00940000159733.o.b.a	ENSGT00560000077232.A.a.e.b	ENSGT00940000154370.d	ENSGT00940000161757.bb	ENSGT00390000005284.b.a	ENSGT00940000163587.b
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00730000111747.a.a	ENSGT00940000166466.f.c	ENSGT01060000249055.a.a	ENSGT00940000165956.c	ENSGT00950000182996.b.a.a.b.d.a.f.b.a.a.a.b.a	ENSGT00940000158417.b.i	ENSGT00940000159107.j.b	ENSGT00940000154489.B.b.b	ENSGT00950000183065.B.e.e	ENSGT00510000047366.c	ENSGT00940000156178.B.a.a	ENSGT00940000165692.e.b.b	ENSGT00940000165521.b.e	ENSGT00940000172009	ENSGT00940000156524.b.a	ENSGT00940000157471.a.a #22	ENSGT00390000001745.b.b.a.b	ENSGT00940000164374.A.c.b.d	ENSGT00940000167550.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.a	ENSGT00940000157155	ENSGT00650000094956	ENSGT00940000165779.a	ENSGT00940000156904.a.b.b	ENSGT00940000158047.i	ENSGT00940000159733.o.b.a	ENSGT00560000077232.A.a.e.b	ENSGT00940000154370.d	ENSGT00940000161757.bb	ENSGT00390000005284.b.a	ENSGT00940000163587.b.a
Common carp reference	MODERN SPECIES	47	pbxip1b (ENSCCRG00000002796)	ENSCCRG00000002897	si:ch211-105c13.3 (ENSCCRG00000002953)	s100t (ENSCCRG00000068549)	ENSCCRG00000078053	ENSCCRG00000003037	ENSCCRG00000003097	ENSCCRG00000003138	tuft1a (ENSCCRG00000003362)	ENSCCRG00000003388	ENSCCRG00000057021	ENSCCRG00000003439	ENSCCRG00000080243	ENSCCRG00000067303	znf687a (ENSCCRG00000036980)	setdb1b (ENSCCRG00000036978) #22	ENSCCRG00000026113	ENSCCRG00000065508	ENSCCRG00000036976	ENSCCRG00000036973	ENSCCRG00000071316	ENSCCRG00000065113	si:ch211-154o6.3 (ENSCCRG00000070208)	znf384b (ENSCCRG00000007400)	gnl1 (ENSCCRG00000007403)	ENSCCRG00000007417	flot1b (ENSCCRG00000076376)	tubb5 (ENSCCRG00000074263)	mdc1 (ENSCCRG00000057575)	ENSCCRG00000007458	ENSCCRG00000028812
Golden-line barbel	MODERN SPECIES	1964														ENSSGRG00000015051	znf687a (ENSSGRG00000015049)	setdb1b (ENSSGRG00000015015) #22	trim108 (ENSSGRG00000015014)	ENSSGRG00000015013	cldc1 (ENSSGRG00000015012)
Goldfish	MODERN SPECIES	7	s100t (ENSCARG00000011281)	ENSCARG00000011276	CHRNB2 (ENSCARG00000011269)	ENSCARG00000011264	SHE (ENSCARG00000011252)	ENSCARG00000011239	ENSCARG00000044138	C1orf43 (ENSCARG00000044094)	ENSCARG00000044083	tuft1a (ENSCARG00000044034)	ENSCARG00000044017	ENSCARG00000042621	ENSCARG00000042550	ENSCARG00000042541	znf687a (ENSCARG00000042522)	setdb1b (ENSCARG00000041612) #22	ENSCARG00000041573	ENSCARG00000041549	ENSCARG00000041536	trim108 (ENSCARG00000041497)	cldc1 (ENSCARG00000041465)	ENSCARG00000041365	si:ch211-154o6.3 (ENSCARG00000041170)	znf384b (ENSCARG00000041155)	gnl1 (ENSCARG00000040930)	DDR1 (ENSCARG00000040767)	flot1b (ENSCARG00000040349)	tubb5 (ENSCARG00000040280)	mdc1 (ENSCARG00000040270)	ENSCARG00000040265	ENSCARG00000040239
Cyprininae	ANCESTRAL SPECIES	293	ENSGT00390000007266.f	ENSGT00950000182870.a.a.b.p	ENSGT00390000002996.a	ENSGT00730000111747.a.b	ENSGT00940000165956.d	ENSGT00940000158417.b.j	ENSGT00940000159107.j.a	ENSGT00940000154489.B.b.a	ENSGT00950000183065.B.e.f	ENSGT00510000047366.d	ENSGT00940000156178.B.a.b	ENSGT00940000165692.e.b.a	ENSGT00940000165521.b.f	ENSGT00950000182957.a.b	ENSGT00940000156524.b.b	ENSGT00940000157471.a.b #22	ENSGT00390000001745.b.b.a.a.a	ENSGT00940000164374.A.c.b.c	ENSGT00940000167550.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.b	ENSGT00940000159873	ENSGT00940000165779.b	ENSGT00940000156904.a.b.a	ENSGT00940000158047.j	ENSGT00940000159733.o.b.b	ENSGT00560000077232.A.a.e.a	ENSGT00940000154370.c.b
Cyprininae_a	ANCESTRAL SPECIES	36				ENSGT00730000111747.a.b	ENSGT00940000165956.d	ENSGT00940000158417.b.j	ENSGT00940000159107.j.a	ENSGT00940000154489.B.b.a	ENSGT00950000183065.B.e.f	ENSGT00510000047366.d	ENSGT00940000156178.B.a.b	ENSGT00940000165692.e.b.a	ENSGT00940000165521.b.f	ENSGT00950000182957.a.b	ENSGT00940000156524.b.b	ENSGT00940000157471.a.b #22	ENSGT00390000001745.b.b.a.a.a	ENSGT00940000164374.A.c.b.c	ENSGT00940000167550.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.a.e.b	ENSGT00940000159873	ENSGT00940000165779.b	ENSGT00940000156904.a.b.a	ENSGT00940000158047.j	ENSGT00940000159733.o.b.b	ENSGT00560000077232.A.a.e.a	ENSGT00940000154370.c.b	ENSGT00940000161757.cb	ENSGT00390000005284.b.b	ENSGT00940000163587.b.b	ENSGT00390000011918
Golden-line barbel	MODERN SPECIES	39	flad1 (ENSSGRG00000008904)	ENSSGRG00000008902	lenep (ENSSGRG00000008901)	pbxip1b (ENSSGRG00000008898)	ENSSGRG00000008896	si:ch211-105c13.3 (ENSSGRG00000008895)	s100t (ENSSGRG00000008893)	CHRNB2 (ENSSGRG00000008837)	ENSSGRG00000008826	ENSSGRG00000008819	tuft1a (ENSSGRG00000008815)	C1orf43 (ENSSGRG00000008810)	ENSSGRG00000008808	ENSSGRG00000008805	znf687a (ENSSGRG00000008801)	setdb1b (ENSSGRG00000008766) #22	trim108 (ENSSGRG00000008764)	ENSSGRG00000008763	cldc1 (ENSSGRG00000008760)	cops7a (ENSSGRG00000008758)	si:ch211-154o6.3 (ENSSGRG00000008754)	gnl1 (ENSSGRG00000008735)	ENSSGRG00000008168	flot1b (ENSSGRG00000007837)	ENSSGRG00000007810	ENSSGRG00000007809	mdc1 (ENSSGRG00000007806)	ENSSGRG00000007803	ino80e (ENSSGRG00000007798)	ENSSGRG00000007795	vars1 (ENSSGRG00000005287)
Common carp reference	MODERN SPECIES	2	ENSCCRG00000070494	flad1 (ENSCCRG00000065201)	ENSCCRG00000077812	pbxip1b (ENSCCRG00000023797)	s100t (ENSCCRG00000071842)	ENSCCRG00000023815	ENSCCRG00000054329	ENSCCRG00000005345	tuft1a (ENSCCRG00000069266)	ENSCCRG00000034388	ENSCCRG00000034383	ENSCCRG00000024570	ENSCCRG00000024574	ENSCCRG00000036985	znf687a (ENSCCRG00000003516)	setdb1b (ENSCCRG00000003507) #22	ENSCCRG00000064307	trim108 (ENSCCRG00000036975)	cldc1 (ENSCCRG00000036972)	cops7a (ENSCCRG00000036968)	si:ch211-154o6.3 (ENSCCRG00000042980)	znf384b (ENSCCRG00000060746)	gnl1 (ENSCCRG00000042972)	ENSCCRG00000042970	flot1b (ENSCCRG00000073131)	tubb5 (ENSCCRG00000067361)	mdc1 (ENSCCRG00000042952)	ENSCCRG00000068313	ino80e (ENSCCRG00000064053)	ENSCCRG00000007461	vars1 (ENSCCRG00000007482)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	35	bmper (ENSCARG00000024848)	BBS9 (ENSCARG00000024661)	pmvk (ENSCARG00000024613)	ARHGEF2 (ENSCARG00000021741)	mbpb (ENSCARG00000021610)	ENSCARG00000021601	ZNF236 (ENSCARG00000021448)	ZNF407 (ENSCARG00000021405)	ENSCARG00000021402	ENSCARG00000021390	TMEM238 (ENSCARG00000021383)	ccdc106a (ENSCARG00000021373)	atp1a3b (ENSCARG00000019300)	rabac1 (ENSCARG00000019186)	dedd1 (ENSCARG00000019176)	setdb1b (ENSCARG00000018394) #22	ENSCARG00000018342	trim108 (ENSCARG00000018332)	cldc1 (ENSCARG00000018322)	si:ch211-154o6.3 (ENSCARG00000018236)	znf384b (ENSCARG00000018218)	gnl1 (ENSCARG00000018203)	DDR1 (ENSCARG00000018160)	flot1b (ENSCARG00000017760)	ENSCARG00000017720	mdc1 (ENSCARG00000017663)	ENSCARG00000017649	ENSCARG00000017642	ino80e (ENSCARG00000017630)	ENSCARG00000017622	vars1 (ENSCARG00000013097)
Goldfish	MODERN SPECIES	156															znf687a (ENSCARG00000061656)	setdb1b (ENSCARG00000058943) #22	ENSCARG00000058794	trim108 (ENSCARG00000058755)	cldc1 (ENSCARG00000058699)
Zebrafish	MODERN SPECIES	7	CHRNB2 (ENSDARG00000017790)	ENSDARG00000087956	ENSDARG00000095062	ENSDARG00000055607	ENSDARG00000093248	tuft1a (ENSDARG00000061242)	C16H1orf43 (ENSDARG00000055613)	ENSDARG00000078387	aqp10a (ENSDARG00000007086)	ENSDARG00000099216	ENSDARG00000101633	il6r (ENSDARG00000104474)	ENSDARG00000095522	ENSDARG00000080675	znf687a (ENSDARG00000102774)	setdb1b (ENSDARG00000099021) #22	dicp3.1 (ENSDARG00000099674)	ENSDARG00000041221	ENSDARG00000104422	ENSDARG00000087509	dicp3.3 (ENSDARG00000087706)	ENSDARG00000115550	trim108 (ENSDARG00000061762)	cldc1 (ENSDARG00000056379)	cops7a (ENSDARG00000022788)	ENSDARG00000099965	si:ch211-154o6.3 (ENSDARG00000099846)	znf384b (ENSDARG00000089032)	gnl1 (ENSDARG00000061789)	DDR1 (ENSDARG00000078523)	ENSDARG00000056339
Euteleosteomorpha	ANCESTRAL SPECIES	4	ENSGT00390000006096.a.b	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.a.a	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000164374.A	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585 #20	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000154716.gc.a	ENSGT00940000161136 #13	ENSGT00940000159348	ENSGT00950000183094.a.m #9	ENSGT00940000177218	ENSGT00390000011497 #8	ENSGT00390000018360.a	ENSGT00940000156893	ENSGT00940000157471.a #22	ENSGT00940000164374.A.l	ENSGT00390000010641.i.a	ENSGT00940000160219	ENSGT00940000154743.A.a.a	ENSGT00390000008859.b.c	ENSGT00940000161506	ENSGT01060000248708	ENSGT00940000154947.l	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Salmoninae	ANCESTRAL SPECIES	230	ENSGT00390000002799.c.b	ENSGT00940000158423.n	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585 #20	ENSGT01030000234515.a.b.a.a.f.j #23	ENSGT00940000154716.gc.a.h	ENSGT00940000161136.g.a #13	ENSGT00940000154716.gc.a.g.a.b	ENSGT00940000161136.h #13	ENSGT00940000159348.l.a	ENSGT00950000183094.a.m.d #9	ENSGT00390000011497 #8	ENSGT00390000018360.a	ENSGT00940000156893.`b.a	ENSGT00940000157471.a #22	ENSGT00940000164374.A.l.a.a
Salmoninae_a	ANCESTRAL SPECIES	184						ENSGT01030000234515.a.b.a.a.f.j #23	ENSGT00940000154716.gc.a.h	ENSGT00940000161136.g.a #13	ENSGT00940000154716.gc.a.g.a.b	ENSGT00940000161136.h #13	ENSGT00940000159348.l.a	ENSGT00950000183094.a.m.d #9	ENSGT00390000011497.h #8	ENSGT00390000018360.a	ENSGT00940000156893.`b.a	ENSGT00940000157471.a #22	ENSGT00940000164374.A.l.b
Salmo	ANCESTRAL SPECIES	93	ENSGT00970000197937.A	ENSGT00970000197937.B	ENSGT00940000157619.a.a.e	ENSGT01030000234784	ENSGT00940000157585.c #20	ENSGT01030000234515.a.b.a.a.f.j.a #23	ENSGT00940000157585.d #20	ENSGT01030000234515.a.b.a.a.f.j.b #23	ENSGT00940000154716.gc.a.h	ENSGT00940000161136.g.a #13	ENSGT00940000159348.l.a	ENSGT00950000183094.a.m.d #9	ENSGT00390000011497.g #8	ENSGT00390000018360.a	ENSGT00940000156893.`b.a	ENSGT00940000157471.a #22	ENSGT00940000164374.A.l.a.a	ENSGT00950000183094.a.m.c #9	ENSGT00390000011497.h #8	ENSGT00390000010641.i.a.c.b	ENSGT00940000160219	ENSGT00940000154743.A.a.a.k.a	ENSGT00390000008859.b.c.i.a	ENSGT00940000161506.e	ENSGT00940000154743.A.a.a.k.b	ENSGT00390000008859.b.c.i.b	ENSGT00940000154947.l.c	ENSGT00510000047412.a.b
River trout	DUPLICATION
River trout	MODERN SPECIES	30	ENSSTUG00000035328	ENSSTUG00000035335	cmtm7 (ENSSTUG00000035342)	cmtm6 (ENSSTUG00000035349)	DYNC1LI1 (ENSSTUG00000035365)	ENSSTUG00000035476	ENSSTUG00000035490	ino80c (ENSSTUG00000035529)	ENSSTUG00000035534	ENSSTUG00000035564	RPRD2 (ENSSTUG00000036040) #9	prpf3 (ENSSTUG00000036051) #8	CIART (ENSSTUG00000036159)	ca14 (ENSSTUG00000036164)	ENSSTUG00000036180	setdb1b (ENSSTUG00000036191) #22	ENSSTUG00000036315	NDUFV1 (ENSSTUG00000036337)	zbtb7b (ENSSTUG00000036463)	ENSSTUG00000036481	ENSSTUG00000036502	pklr (ENSSTUG00000036585)	clk2b (ENSSTUG00000037388)	khdc4 (ENSSTUG00000037441)	ENSSTUG00000037463	ENSSTUG00000037479	si:ch211-120k19.1 (ENSSTUG00000037484)	rpl18 (ENSSTUG00000037494)	ENSSTUG00000037608	CYTH2 (ENSSTUG00000037647)	ENSSTUG00000038398
River trout	MODERN SPECIES	22											ENSSTUG00000000945	ENSSTUG00000000939 #9	prpf3 (ENSSTUG00000000908) #8	ca14 (ENSSTUG00000000877)	ENSSTUG00000000868	setdb1b (ENSSTUG00000000385) #22	ENSSTUG00000000199	NDUFV1 (ENSSTUG00000001249)	zbtb7b (ENSSTUG00000001230)	ENSSTUG00000001223	ENSSTUG00000001219	pklr (ENSSTUG00000000928)	ENSSTUG00000000890	cyp11c1 (ENSSTUG00000000883)	ENSSTUG00000000876	ENSSTUG00000000870	ENSSTUG00000000859	ENSSTUG00000000850	si:ch211-120k19.1 (ENSSTUG00000000844)	rpl18 (ENSSTUG00000000834)	ENSSTUG00000000827
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	11	dap3 (ENSSSAG00000057489)	asal (ENSSSAG00000005307)	ENSSSAG00000111661	rnf115a (ENSSSAG00000101171)	polr3c (ENSSSAG00000006875)	ITGA10 (ENSSSAG00000119547)	rabp (ENSSSAG00000045726)	ENSSSAG00000005601 #20	ENSSSAG00000114447 #23	ENSSSAG00000105110	ENSSSAG00000119214 #13	ENSSSAG00000050867	PRPF3 (ENSSSAG00000121892) #8	ENSSSAG00000113441	ENSSSAG00000005168	ENSSSAG00000050118 #22	ENSSSAG00000094688	ENSSSAG00000099999	ENSSSAG00000107138	ENSSSAG00000116573	ENSSSAG00000083211	pklr (ENSSSAG00000003928)	ENSSSAG00000036512	clk2b (ENSSSAG00000041272)	ENSSSAG00000042238	ENSSSAG00000105629	ENSSSAG00000090830	ENSSSAG00000089819	ENSSSAG00000087779	ENSSSAG00000106254	ENSSSAG00000111115
Atlantic salmon	MODERN SPECIES	24	rnf115a (ENSSSAG00000005342)	ENSSSAG00000115950	polr3c (ENSSSAG00000005255)	crabp2a (ENSSSAG00000082499)	ENSSSAG00000081758 #20	ENSSSAG00000059839 #23	ENSSSAG00000116457	ENSSSAG00000065111	ENSSSAG00000060546 #13	ENSSSAG00000090396	ENSSSAG00000005496	RPRD2 (ENSSSAG00000005473) #9	ENSSSAG00000050737 #8	CIART (ENSSSAG00000120551)	ENSSSAG00000050586	ENSSSAG00000084036 #22	ENSSSAG00000040011	ENSSSAG00000005206	ENSSSAG00000086337	ENSSSAG00000085935	ENSSSAG00000101361	ENSSSAG00000046802	pklr (ENSSSAG00000035711)	ENSSSAG00000086140	clk2b (ENSSSAG00000110405)	ENSSSAG00000083656	ENSSSAG00000103802	ENSSSAG00000050017	ENSSSAG00000046843	RL18 (ENSSSAG00000002140)	ENSSSAG00000092136
Oncorhynchus	ANCESTRAL SPECIES	152									ENSGT00940000154716.gc.a.g.a.b	ENSGT00940000161136.h.a #13	ENSGT00940000159348.l.a.a.b	ENSGT00950000183094.a.m.d #9	ENSGT00390000011497.h #8	ENSGT00390000018360.a	ENSGT00940000156893.`b.a	ENSGT00940000157471.a #22	ENSGT00940000164374.A.l.b	ENSGT00940000161506.f	ENSGT00940000154947.l.a	ENSGT00510000047412.a.b
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	11	rnf115a (ENSOMYG00000002292)	polr3c (ENSOMYG00000002374)	ITGA10 (ENSOMYG00000062913)	ENSOMYG00000050019	crabp2a (ENSOMYG00000054803)	ENSOMYG00000003951	arnt (ENSOMYG00000004218) #20	ENSOMYG00000025358 #23	ENSOMYG00000077550	ENSOMYG00000061678 #13	ENSOMYG00000004621	RPRD2 (ENSOMYG00000004723) #9	ENSOMYG00000004840 #8	ENSOMYG00000004943	ENSOMYG00000005055	ENSOMYG00000005324 #22	ENSOMYG00000005509	ENSOMYG00000068559	ENSOMYG00000074419	ENSOMYG00000000135	ENSOMYG00000000179	ENSOMYG00000000212	pklr (ENSOMYG00000000259)	ENSOMYG00000000305	ENSOMYG00000062252	clk2b (ENSOMYG00000069092)	ENSOMYG00000000342	ENSOMYG00000000369	ENSOMYG00000000392	ENSOMYG00000067731	si:ch211-120k19.1 (ENSOMYG00000054340)
Rainbow trout	MODERN SPECIES	21	dap3 (ENSOMYG00000000989)	ENSOMYG00000062477	rnf115a (ENSOMYG00000000557)	polr3c (ENSOMYG00000000589)	ITGA10 (ENSOMYG00000056132)	ENSOMYG00000025402 #20	ENSOMYG00000052016 #23	ENSOMYG00000053266	ENSOMYG00000063165	ENSOMYG00000065942 #13	ENSOMYG00000000639	RPRD2 (ENSOMYG00000000645) #9	ENSOMYG00000000719 #8	CIART (ENSOMYG00000000738)	ENSOMYG00000077358	ENSOMYG00000000802 #22	ENSOMYG00000000883	ENSOMYG00000074213	ENSOMYG00000054999	ENSOMYG00000058718	ENSOMYG00000000936	ENSOMYG00000000401	cyp11b (ENSOMYG00000056586)	ENSOMYG00000049867	ENSOMYG00000000423	ENSOMYG00000060247	ENSOMYG00000064105	ENSOMYG00000058550	si:ch211-120k19.1 (ENSOMYG00000076055)	ENSOMYG00000069398	rpl18 (ENSOMYG00000001001)
Oncorhynchus_a	ANCESTRAL SPECIES	91	ENSGT00390000015248.c.b.b.c.a	ENSGT00390000009464.e.a	ENSGT00940000157203.c	ENSGT00390000002799.d.a	ENSGT00940000158423.m.c	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000157585 #20	ENSGT01030000234515.a.b.a.a.f.i.b.a #23	ENSGT00940000154716.gc.a.h	ENSGT00940000159348.l.a.a.a	ENSGT00950000183094.a.m.d #9	ENSGT00390000011497.h #8	ENSGT00390000018360.a	ENSGT00940000156893.`b.a	ENSGT00940000157471.a #22	ENSGT00940000164374.A.l.b	ENSGT00390000010641.i.a.d	ENSGT00940000160219	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000154743.A.a.a.k.b	ENSGT00390000008859.b.c.i.a	ENSGT00940000161506.e	ENSGT00940000154947.l.b	ENSGT00510000047412.a.a	ENSGT00940000159286.a.b.d.i.b	ENSGT01030000234586.B.a.b.g.b	ENSGT00940000158808.lb.a	ENSGT00940000165838.g	ENSGT00390000012976.o.a	ENSGT00940000161197.i.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	4	GBA1 (ENSOKIG00005042013)	rnf115a (ENSOKIG00005041962)	polr3c (ENSOKIG00005041919)	ITGA10 (ENSOKIG00005041776)	ENSOKIG00005041755	crabp2a (ENSOKIG00005041738)	ENSOKIG00005041724	arnt (ENSOKIG00005041615) #20	CERS2 (ENSOKIG00005041548) #23	CELF3 (ENSOKIG00005041453)	ENSOKIG00005040601	RPRD2 (ENSOKIG00005040488) #9	ENSOKIG00005040308 #8	CIART (ENSOKIG00005040281)	ENSOKIG00005040259	setdb1b (ENSOKIG00005039364) #22	trim108 (ENSOKIG00005039269)	zbtb7b (ENSOKIG00005039256)	NDUFV1 (ENSOKIG00005039164)	ENSOKIG00005039020	ENSOKIG00005038985	pklr (ENSOKIG00005036130)	cyp11c1 (ENSOKIG00005035352)	clk2b (ENSOKIG00005035118)	KHDC4 (ENSOKIG00005035089)	ENSOKIG00005035063	ENSOKIG00005035057	ENSOKIG00005035039	ENSOKIG00005035027	ENSOKIG00005034817	si:ch211-120k19.1 (ENSOKIG00005034771)
Coho salmon	MODERN SPECIES	11	ITGA10 (ENSOKIG00005000888)	ENSOKIG00005000959	ARNT (ENSOKIG00005001010) #20	CERS2 (ENSOKIG00005001110) #23	ENSOKIG00005001113	ENSOKIG00005001119	ENSOKIG00005001124 #13	ENSOKIG00005001131	ENSOKIG00005001205	ENSOKIG00005001393 #9	ENSOKIG00005001395 #9	prpf3 (ENSOKIG00005001403) #8	ENSOKIG00005001422	ca14 (ENSOKIG00005001426)	ENSOKIG00005001431	SETDB1 (ENSOKIG00005001468) #22	NDUFV1 (ENSOKIG00005001550)	ENSOKIG00005001581	ZBTB7B (ENSOKIG00005001588)	ENSOKIG00005001594	pklr (ENSOKIG00005001668)	ENSOKIG00005002118	ENSOKIG00005002155	clk2b (ENSOKIG00005002163)	khdc4 (ENSOKIG00005002189)	ENSOKIG00005002212	ENSOKIG00005002242	si:ch211-120k19.1 (ENSOKIG00005002269)	rpl18 (ENSOKIG00005002294)	ENSOKIG00005002342	ENSOKIG00005002349
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	3035															ca14 (ENSOTSG00005035456)	setdb1b (ENSOTSG00005035466) #22	ENSOTSG00005035514	NDUFV1 (ENSOTSG00005035521)	ENSOTSG00005035524	pklr (ENSOTSG00005035527)
Chinook salmon	MODERN SPECIES	196															ca14 (ENSOTSG00005014847)	setdb1b (ENSOTSG00005014448) #22	ENSOTSG00005014439	NDUFV1 (ENSOTSG00005014436)	ENSOTSG00005014433	pklr (ENSOTSG00005014432)
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	12688																ENSHHUG00000017479 #22
Huchen	MODERN SPECIES	2967																setdb1b (ENSHHUG00000046565) #22	ENSHHUG00000046563	ENSHHUG00000046556	NDUFV1 (ENSHHUG00000046517)	ENSHHUG00000046511	ENSHHUG00000046509	ENSHHUG00000046508	ENSHHUG00000046472
Huchen	MODERN SPECIES	4282																setdb1b (ENSHHUG00000047305) #22	trim108 (ENSHHUG00000047303)
Northern pike	MODERN SPECIES	19	GBA1 (ENSELUG00000013090)	rnf115a (ENSELUG00000013123)	polr3c (ENSELUG00000013209)	ITGA10 (ENSELUG00000013251)	ENSELUG00000013287	ENSELUG00000013307	arnt (ENSELUG00000013390) #20	CERS2 (ENSELUG00000013435) #23	CELF3 (ENSELUG00000013477)	ENSELUG00000013504 #13	ENSELUG00000013552	RPRD2 (ENSELUG00000013579) #9	prpf3 (ENSELUG00000013624) #8	ENSELUG00000013661	ca14 (ENSELUG00000013739)	setdb1b (ENSELUG00000013948) #22	NDUFV1 (ENSELUG00000014045)	zbtb7b (ENSELUG00000014058)	ENSELUG00000001418	pklr (ENSELUG00000014172)	cyp11c1 (ENSELUG00000014194)	khdc4 (ENSELUG00000014317)	ENSELUG00000014342	ENSELUG00000014443	ENSELUG00000025179	si:ch211-120k19.1 (ENSELUG00000024753)	ENSELUG00000028871	rpl18 (ENSELUG00000014490)	ENSELUG00000014531	CYTH2 (ENSELUG00000014581)	ENSELUG00000014601
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00940000154716.hc	ENSGT00940000171776	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074	ENSGT01060000248591.b.b
Mangrove rivulus	MODERN SPECIES	81	GBA1 (ENSKMAG00000001722)	rnf115a (ENSKMAG00000001643)	polr3c (ENSKMAG00000001574)	ITGA10 (ENSKMAG00000001549)	crabp2a (ENSKMAG00000001532)	ENSKMAG00000001521	ca14 (ENSKMAG00000001496)	ENSKMAG00000001480	prpf3 (ENSKMAG00000001390) #8	RPRD2 (ENSKMAG00000001366) #9	ENSKMAG00000001354	ENSKMAG00000001330 #13	CELF3 (ENSKMAG00000001269)	CERS2 (ENSKMAG00000001244) #23	arnt (ENSKMAG00000001221) #20	setdb1b (ENSKMAG00000001197) #22	ENSKMAG00000001130
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015003396	TOMM40 (ENSNFUG00015003414)	ENSNFUG00015003428	ENSNFUG00015003449	EPN1 (ENSNFUG00015003490)	ENSNFUG00015003498	ENSNFUG00015003504	ISOC2 (ENSNFUG00015003507)	atg12 (ENSNFUG00015003512)	ENSNFUG00015008982	rcvrn2 (ENSNFUG00015009004)	ENSNFUG00015009067	TMEM238 (ENSNFUG00015009076)	CCDC106 (ENSNFUG00015009089)	u2af2a (ENSNFUG00015009124)	SETDB1B (ENSNFUG00015009197) #22	ENSNFUG00015009478	cyp11c1 (ENSNFUG00015009520)	pklr (ENSNFUG00015010007)	ENSNFUG00015010707	zbtb7b (ENSNFUG00015010734)	KIAA0907 (ENSNFUG00015010744)	ENSNFUG00015010786	ENSNFUG00015010800	ENSNFUG00015010883	ENSNFUG00015010974	si:ch211-120k19.1 (ENSNFUG00015010979)	rpl18 (ENSNFUG00015010994)	ENSNFUG00015011008	CYTH2 (ENSNFUG00015011254)	SI (ENSNFUG00015013986)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
NAME_4	ANCESTRAL SPECIES	1	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Mummichog	MODERN SPECIES	2225	GBA1 (ENSFHEG00000021460)	rnf115a (ENSFHEG00000021540)	polr3c (ENSFHEG00000000872)	ITGA10 (ENSFHEG00000021641)	crabp2a (ENSFHEG00000021658)	ENSFHEG00000021670	ca14 (ENSFHEG00000021685)	CIART (ENSFHEG00000021699)	prpf3 (ENSFHEG00000021746) #8	RPRD2 (ENSFHEG00000021755) #9	ENSFHEG00000021877	ENSFHEG00000021887 #13	CELF3 (ENSFHEG00000021947)	CERS2 (ENSFHEG00000021996) #23	arnt (ENSFHEG00000022149) #20	setdb1b (ENSFHEG00000022195) #22	clk2b (ENSFHEG00000022294)	cyp11c1 (ENSFHEG00000022306)	pklr (ENSFHEG00000022367)	ENSFHEG00000022413	zbtb7b (ENSFHEG00000022426)	NDUFV1 (ENSFHEG00000022456)	khdc4 (ENSFHEG00000022540)	ENSFHEG00000022558	ENSFHEG00000022581	ENSFHEG00000022701	ENSFHEG00000022717	si:ch211-120k19.1 (ENSFHEG00000022726)	rpl18 (ENSFHEG00000022747)	ENSFHEG00000022750	ENSFHEG00000022756
Sheepshead minnow	MODERN SPECIES	341		polr3c (ENSCVAG00000009443)	ENSCVAG00000009395	crabp2a (ENSCVAG00000009372)	ENSCVAG00000009358	ca14 (ENSCVAG00000009348)	CIART (ENSCVAG00000009325)	prpf3 (ENSCVAG00000009318) #8	RPRD2 (ENSCVAG00000009274) #9	ENSCVAG00000009269	ENSCVAG00000009253	ENSCVAG00000009194	CELF3 (ENSCVAG00000009184)	CERS2 (ENSCVAG00000009101) #23	arnt (ENSCVAG00000008992) #20	setdb1b (ENSCVAG00000008877) #22	clk2b (ENSCVAG00000000248)	ENSCVAG00000008807	cyp11c1 (ENSCVAG00000008800)	pklr (ENSCVAG00000008759)	ENSCVAG00000008694	zbtb7b (ENSCVAG00000008597)	NDUFV1 (ENSCVAG00000008586)	ENSCVAG00000000955	ENSCVAG00000008536	ENSCVAG00000008533	ENSCVAG00000008516	ENSCVAG00000008396	si:ch211-120k19.1 (ENSCVAG00000008380)	rpl18 (ENSCVAG00000008338)	ENSCVAG00000008291
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Poecilia	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
NAME_6	ANCESTRAL SPECIES	24														ENSGT01030000234515.a.b.a.a.f.h #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	3925																setdb1b (ENSPLAG00000019076) #22
Sailfin molly	MODERN SPECIES	3721													ENSPLAG00000017418	CERS2 (ENSPLAG00000017373) #23	arnt (ENSPLAG00000017159) #20	setdb1b (ENSPLAG00000017117) #22
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	286													setdb1b (ENSPFOG00000004623) #22	CERS2 (ENSPFOG00000004719) #23	arnt (ENSPFOG00000005237) #20	setdb1b (ENSPFOG00000004429) #22	ENSPFOG00000023289	clk2b (ENSPFOG00000005421)	ENSPFOG00000005571	cyp11c1 (ENSPFOG00000005578)	pklr (ENSPFOG00000005647)	ENSPFOG00000005730	zbtb7b (ENSPFOG00000005859)	NDUFV1 (ENSPFOG00000005879)	ENSPFOG00000006071	ENSPFOG00000006295	ENSPFOG00000005853	ENSPFOG00000006597	si:ch211-120k19.1 (ENSPFOG00000008279)	rpl18 (ENSPFOG00000008283)	ENSPFOG00000008326
Amazon molly	MODERN SPECIES	286																setdb1b (ENSPFOG00000004623) #22	CERS2 (ENSPFOG00000004719) #23	arnt (ENSPFOG00000005237) #20	setdb1b (ENSPFOG00000004429) #22	ENSPFOG00000023289	clk2b (ENSPFOG00000005421)	ENSPFOG00000005571	cyp11c1 (ENSPFOG00000005578)	pklr (ENSPFOG00000005647)	ENSPFOG00000005730	zbtb7b (ENSPFOG00000005859)	NDUFV1 (ENSPFOG00000005879)	ENSPFOG00000006071	ENSPFOG00000006295	ENSPFOG00000005853	ENSPFOG00000006597
Guppy	MODERN SPECIES	446	polr3c (ENSPREG00000017050)	ITGA10 (ENSPREG00000017097)	crabp2a (ENSPREG00000017134)	ENSPREG00000017155	ca14 (ENSPREG00000017170)	ENSPREG00000017198	prpf3 (ENSPREG00000017216) #8	ENSPREG00000017263	RPRD2 (ENSPREG00000017269) #9	ENSPREG00000017293	ENSPREG00000017312	ENSPREG00000017342 #13	CELF3 (ENSPREG00000017378)	CERS2 (ENSPREG00000017409) #23	arnt (ENSPREG00000017435) #20	setdb1b (ENSPREG00000017459) #22	clk2b (ENSPREG00000017497)	ENSPREG00000017511	cyb5r4 (ENSPREG00000017539)	ENSPREG00000017560	sim1a (ENSPREG00000017582)	ASCC3 (ENSPREG00000017616)	ENSPREG00000017685	ENSPREG00000017694	GRIK2 (ENSPREG00000017794)	ENSPREG00000017838	HACE1 (ENSPREG00000017873)	popdc3 (ENSPREG00000017962)	dtnbp1a (ENSPREG00000017991)	ENSPREG00000018010	aldh2.2 (ENSPREG00000018040)
Platyfish	MODERN SPECIES	17	rnf115a (ENSXMAG00000021206)	polr3c (ENSXMAG00000016215)	ITGA10 (ENSXMAG00000016260)	crabp2a (ENSXMAG00000016304)	ENSXMAG00000019942	ca14 (ENSXMAG00000016324)	ENSXMAG00000026817	ENSXMAG00000029619	prpf3 (ENSXMAG00000016347) #8	RPRD2 (ENSXMAG00000016368) #9	ENSXMAG00000016382	ENSXMAG00000016454	CELF3 (ENSXMAG00000016475)	CERS2 (ENSXMAG00000016508) #23	arnt (ENSXMAG00000016545) #20	setdb1b (ENSXMAG00000016600) #22	ENSXMAG00000022818	clk2b (ENSXMAG00000016620)	cyp11c1 (ENSXMAG00000016675)	pklr (ENSXMAG00000016700)	ENSXMAG00000021968	zbtb7b (ENSXMAG00000012652)	NDUFV1 (ENSXMAG00000012641)	khdc4 (ENSXMAG00000012623)	ENSXMAG00000012619	ENSXMAG00000012601	ENSXMAG00000012405	si:ch211-120k19.1 (ENSXMAG00000012399)	rpl18 (ENSXMAG00000012396)	ENSXMAG00000022906	CYTH2 (ENSXMAG00000012332)
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074	ENSGT01060000248591.b.b
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074	ENSGT01060000248591.b.b
Javanese ricefish	MODERN SPECIES	7	GBA1 (ENSOJAG00000019129)	rnf115a (ENSOJAG00000019441)	polr3c (ENSOJAG00000019474)	ITGA10 (ENSOJAG00000019505)	crabp2a (ENSOJAG00000019646)	ENSOJAG00000019652	ca14 (ENSOJAG00000019663)	prpf3 (ENSOJAG00000019697) #8	ENSOJAG00000019793	ENSOJAG00000019800 #9	ENSOJAG00000019837	ENSOJAG00000019873	CELF3 (ENSOJAG00000020014)	CERS2 (ENSOJAG00000020190) #23	arnt (ENSOJAG00000020250) #20	setdb1b (ENSOJAG00000020866) #22	ENSOJAG00000001960	si:ch211-81a5.8 (ENSOJAG00000002047)	cyp11c1 (ENSOJAG00000002143)	pklr (ENSOJAG00000002772)	ENSOJAG00000004375	zbtb7b (ENSOJAG00000004458)	khdc4 (ENSOJAG00000004481)	ENSOJAG00000004553	ENSOJAG00000004576	ENSOJAG00000004600	KCNJ14 (ENSOJAG00000004625)	si:ch211-120k19.1 (ENSOJAG00000005545)	rpl18 (ENSOJAG00000005574)	ENSOJAG00000005634	CYTH2 (ENSOJAG00000005806)
Indian medaka	MODERN SPECIES	5	ITGA10 (ENSOMEG00000008660)	crabp2a (ENSOMEG00000008684)	ENSOMEG00000008697	ENSOMEG00000008710	ENSOMEG00000008727	ca14 (ENSOMEG00000008792)	CIART (ENSOMEG00000008836)	prpf3 (ENSOMEG00000000940) #8	ENSOMEG00000008935	ENSOMEG00000008953 #9	ENSOMEG00000009022	ENSOMEG00000009061	CELF3 (ENSOMEG00000009131)	CERS2 (ENSOMEG00000009154) #23	arnt (ENSOMEG00000009257) #20	setdb1b (ENSOMEG00000009457) #22	clk2b (ENSOMEG00000009526)	ENSOMEG00000009548	cyp11c1 (ENSOMEG00000009612)	pklr (ENSOMEG00000009673)	ENSOMEG00000009753	zbtb7b (ENSOMEG00000009771)	khdc4 (ENSOMEG00000009796)	ENSOMEG00000009809	KCNJ14 (ENSOMEG00000009831)	ENSOMEG00000009938	si:ch211-120k19.1 (ENSOMEG00000009970)	rpl18 (ENSOMEG00000009999)	ENSOMEG00000010027	CYTH2 (ENSOMEG00000010080)	ENSOMEG00000010114
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074	ENSGT01060000248591.b.b	ENSGT00940000153560.b.a.b
Japanese Medaka HdrR	MODERN SPECIES	7	gba (ENSORLG00000010079)	rnf115a (ENSORLG00000010107)	polr3c (ENSORLG00000010133)	ITGA10 (ENSORLG00000010249)	crabp2a (ENSORLG00000010277)	ENSORLG00000024479	ca14 (ENSORLG00000010291)	CIART (ENSORLG00000010295)	prpf3 (ENSORLG00000010330) #8	RPRD2 (ENSORLG00000010343) #9	ENSORLG00000010391	ENSORLG00000010424	CELF3 (ENSORLG00000010447)	CERS2 (ENSORLG00000010512) #23	arnt (ENSORLG00000010551) #20	setdb1b (ENSORLG00000010602) #22	ENSORLG00000022513	clk2b (ENSORLG00000010615)	cyp11b (ENSORLG00000010480)	pklr (ENSORLG00000010652)	ENSORLG00000010670	zbtb7b (ENSORLG00000010678)	khdc4 (ENSORLG00000010686)	ENSORLG00000010691	KCNJ14 (ENSORLG00000010708)	ENSORLG00000010926	si:ch211-120k19.1 (ENSORLG00000010938)	rpl18 (ENSORLG00000023266)	ENSORLG00000024922	CYTH2 (ENSORLG00000011002)	ENSORLG00000022932
Chinese medaka	MODERN SPECIES	467	GBA1 (ENSOSIG00000015867)	rnf115a (ENSOSIG00000015876)	polr3c (ENSOSIG00000015878)	ITGA10 (ENSOSIG00000015893)	crabp2a (ENSOSIG00000015997)	ENSOSIG00000016000	ENSOSIG00000016001	ca14 (ENSOSIG00000016006)	ENSOSIG00000016008	ENSOSIG00000016009 #9	ENSOSIG00000016026	ENSOSIG00000017644	CELF3 (ENSOSIG00000017648)	CERS2 (ENSOSIG00000017658) #23	arnt (ENSOSIG00000017723) #20	setdb1b (ENSOSIG00000018480) #22	cyp11c1 (ENSOSIG00000018566)	pklr (ENSOSIG00000019535)	ENSOSIG00000020348	zbtb7b (ENSOSIG00000020349)	khdc4 (ENSOSIG00000020351)	ENSOSIG00000020353	KCNJ14 (ENSOSIG00000020354)	ENSOSIG00000020357	si:ch211-120k19.1 (ENSOSIG00000020359)	rpl18 (ENSOSIG00000020363)	ENSOSIG00000020373	CYTH2 (ENSOSIG00000020401)	ENSOSIG00000020489	zgc:158689 (ENSOSIG00000020493)	ndufa3 (ENSOSIG00000020495)
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976	ENSGT00940000161197.j
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Burton s mouthbrooder	MODERN SPECIES	770														CERS2 (ENSHBUG00000004562) #23	arnt (ENSHBUG00000004591) #20	setdb1b (ENSHBUG00000004618) #22	clk2b (ENSHBUG00000004682)	rbp5 (ENSHBUG00000004715)	cyp11c1 (ENSHBUG00000004786)	pklr (ENSHBUG00000004824)	ENSHBUG00000004831	zbtb7b (ENSHBUG00000004838)	NDUFV1 (ENSHBUG00000004873)	khdc4 (ENSHBUG00000004885)	ENSHBUG00000004898	ENSHBUG00000004930	ENSHBUG00000005049	si:ch211-120k19.1 (ENSHBUG00000005072)	rpl18 (ENSHBUG00000005115)	ENSHBUG00000005127	CYTH2 (ENSHBUG00000005183)
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Zebra mbuna	MODERN SPECIES	1093	dap3 (ENSMZEG00005015864)	GBA1 (ENSMZEG00005015871)	rnf115a (ENSMZEG00005015878)	polr3c (ENSMZEG00005015882)	ITGA10 (ENSMZEG00005015917)	crabp2a (ENSMZEG00005015933)	ca14 (ENSMZEG00005015942)	CIART (ENSMZEG00005015953)	prpf3 (ENSMZEG00005015970) #8	RPRD2 (ENSMZEG00005015983) #9	ENSMZEG00005015989	ENSMZEG00005015998	CELF3 (ENSMZEG00005016013)	CERS2 (ENSMZEG00005016071) #23	arnt (ENSMZEG00005016081) #20	setdb1b (ENSMZEG00005016099) #22	clk2b (ENSMZEG00005016119)	rbp5 (ENSMZEG00005016127)	cyp11c1 (ENSMZEG00005016136)	pklr (ENSMZEG00005016142)	ENSMZEG00005016161	zbtb7b (ENSMZEG00005016168)	NDUFV1 (ENSMZEG00005016175)	khdc4 (ENSMZEG00005016190)	ENSMZEG00005016204	ENSMZEG00005016208	ENSMZEG00005016220	si:ch211-120k19.1 (ENSMZEG00005016251)	rpl18 (ENSMZEG00005016258)	ENSMZEG00005016265	CYTH2 (ENSMZEG00005016272)
Eastern happy	MODERN SPECIES	2	dap3 (ENSACLG00000019804)	GBA1 (ENSACLG00000019877)	rnf115a (ENSACLG00000019901)	polr3c (ENSACLG00000019970)	ITGA10 (ENSACLG00000020004)	crabp2a (ENSACLG00000020063)	ca14 (ENSACLG00000020088)	CIART (ENSACLG00000020117)	prpf3 (ENSACLG00000020127) #8	RPRD2 (ENSACLG00000020253) #9	ENSACLG00000020262	ENSACLG00000020296	CELF3 (ENSACLG00000020342)	CERS2 (ENSACLG00000020370) #23	arnt (ENSACLG00000020427) #20	setdb1b (ENSACLG00000020489) #22	clk2b (ENSACLG00000020529)	rbp5 (ENSACLG00000020557)	ENSACLG00000020569	cyp11c1 (ENSACLG00000020574)	pklr (ENSACLG00000020605)	ENSACLG00000020658	zbtb7b (ENSACLG00000020686)	NDUFV1 (ENSACLG00000020692)	khdc4 (ENSACLG00000020720)	ENSACLG00000020772	KCNJ14 (ENSACLG00000020783)	ENSACLG00000020807	si:ch211-120k19.1 (ENSACLG00000020925)	rpl18 (ENSACLG00000020938)	ENSACLG00000020962
P. nyererei	MODERN SPECIES	340	dap3 (ENSPNYG00000004551)	GBA1 (ENSPNYG00000004543)	rnf115a (ENSPNYG00000004530)	polr3c (ENSPNYG00000004504)	ITGA10 (ENSPNYG00000004429)	crabp2a (ENSPNYG00000004411)	ca14 (ENSPNYG00000004389)	CIART (ENSPNYG00000004366)	prpf3 (ENSPNYG00000004279) #8	RPRD2 (ENSPNYG00000004252) #9	ENSPNYG00000004232	ENSPNYG00000004203	CELF3 (ENSPNYG00000004167)	CERS2 (ENSPNYG00000004111) #23	arnt (ENSPNYG00000004092) #20	setdb1b (ENSPNYG00000003997) #22	clk2b (ENSPNYG00000003959)	rbp5 (ENSPNYG00000003932)	cyp11c1 (ENSPNYG00000003279)	pklr (ENSPNYG00000003190)	ENSPNYG00000003061	zbtb7b (ENSPNYG00000003031)	NDUFV1 (ENSPNYG00000002771)	khdc4 (ENSPNYG00000002718)	ENSPNYG00000002696	ENSPNYG00000002676	ENSPNYG00000002550	si:ch211-120k19.1 (ENSPNYG00000002526)	rpl18 (ENSPNYG00000002493)	ENSPNYG00000002473	CYTH2 (ENSPNYG00000002421)
Lyretail cichlid	MODERN SPECIES	421	GBA1 (ENSNBRG00000003782)	rnf115a (ENSNBRG00000003743)	polr3c (ENSNBRG00000003707)	ITGA10 (ENSNBRG00000003630)	crabp2a (ENSNBRG00000003596)	ENSNBRG00000003588	ca14 (ENSNBRG00000003555)	ENSNBRG00000003513	prpf3 (ENSNBRG00000003462) #8	ENSNBRG00000003446 #9	ENSNBRG00000003429	ENSNBRG00000003412	CELF3 (ENSNBRG00000003364)	CERS2 (ENSNBRG00000003338) #23	arnt (ENSNBRG00000003317) #20	setdb1b (ENSNBRG00000003147) #22	clk2b (ENSNBRG00000003097)	rbp5 (ENSNBRG00000003077)	cyp11c1 (ENSNBRG00000003044)	pklr (ENSNBRG00000003002)	ENSNBRG00000002950	zbtb7b (ENSNBRG00000002939)	NDUFV1 (ENSNBRG00000002909)	khdc4 (ENSNBRG00000002786)	ENSNBRG00000002771	ENSNBRG00000002751	ENSNBRG00000002642	si:ch211-120k19.1 (ENSNBRG00000002613)	rpl18 (ENSNBRG00000002581)	ENSNBRG00000002561	ENSNBRG00000002552
Nile tilapia	MODERN SPECIES	2	dap3 (ENSONIG00000006354)	GBA1 (ENSONIG00000006359)	rnf115 (ENSONIG00000042941)	polr3c (ENSONIG00000006370)	ITGA10 (ENSONIG00000006374)	crabp2a (ENSONIG00000006388)	ca14 (ENSONIG00000006390)	CIART (ENSONIG00000032306)	prpf3 (ENSONIG00000006394) #8	RPRD2 (ENSONIG00000006400) #9	ENSONIG00000006402	ENSONIG00000006410 #13	CELF3 (ENSONIG00000006421)	CERS2 (ENSONIG00000006425) #23	arnt (ENSONIG00000006431) #20	setdb1b (ENSONIG00000006454) #22	ENSONIG00000035023	clk2b (ENSONIG00000006457)	rbp5 (ENSONIG00000031419)	cyp11c1 (ENSONIG00000006462)	pklr (ENSONIG00000006474)	ENSONIG00000006481	zbtb7b (ENSONIG00000028677)	NDUFV1 (ENSONIG00000006484)	khdc4 (ENSONIG00000006487)	ENSONIG00000006491	ENSONIG00000041006	ENSONIG00000006492	si:ch211-120k19.1 (ENSONIG00000039620)	rpl18 (ENSONIG00000006539)	ENSONIG00000006545
Midas cichlid	MODERN SPECIES	791	rnf115a (ENSACIG00000008100)	polr3c (ENSACIG00000008064)	ITGA10 (ENSACIG00000008000)	crabp2a (ENSACIG00000007975)	ENSACIG00000007970	ca14 (ENSACIG00000007927)	ENSACIG00000007911	prpf3 (ENSACIG00000007876) #8	ENSACIG00000007864	ENSACIG00000007828 #9	ENSACIG00000007759	ENSACIG00000007730	CELF3 (ENSACIG00000007698)	CERS2 (ENSACIG00000007675) #23	arnt (ENSACIG00000007549) #20	setdb1b (ENSACIG00000007359) #22	clk2b (ENSACIG00000007329)	rbp5 (ENSACIG00000007317)	cyp11c1 (ENSACIG00000007289)	pklr (ENSACIG00000007258)	ENSACIG00000007213	zbtb7b (ENSACIG00000007192)	NDUFV1 (ENSACIG00000007163)	khdc4 (ENSACIG00000007120)	ENSACIG00000007108	ENSACIG00000007098	ENSACIG00000006989	si:ch211-120k19.1 (ENSACIG00000006948)	rpl18 (ENSACIG00000006925)	ENSACIG00000006911	CYTH2 (ENSACIG00000006879)
Pomacentridae	ANCESTRAL SPECIES	79	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a	ENSGT00390000001195.b	ENSGT00940000157689	ENSGT00940000154969.a	ENSGT00940000158389	ENSGT00940000159103	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Bicolor damselfish	MODERN SPECIES	2649															ENSSPAG00000012206	ENSSPAG00000012218 #22	clk2b (ENSSPAG00000012247)
Pomacentridae_A	ANCESTRAL SPECIES	78	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a	ENSGT00390000001195.b	ENSGT00940000157689	ENSGT00940000154969.a	ENSGT00940000158389	ENSGT00940000159103	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Amphiprion	ANCESTRAL SPECIES	111	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a	ENSGT00390000001195.b	ENSGT00940000157689	ENSGT00940000155356.d.b.b.b.a.c.a.a.b	ENSGT00940000154969.a	ENSGT00940000158389	ENSGT00940000159103	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22
Clown anemonefish	MODERN SPECIES	2957																setdb1b (ENSAOCG00000005586) #22
Orange clownfish	MODERN SPECIES	21	clk2b (ENSAPEG00000007326)	ENSAPEG00000007374	ENSAPEG00000007399	ENSAPEG00000007424	ENSAPEG00000007443	ENSAPEG00000007466	ENSAPEG00000007476	ENSAPEG00000007497 #9	ENSAPEG00000007512	ENSAPEG00000007567 #13	ENSAPEG00000007596	ENSAPEG00000007622	CELF3 (ENSAPEG00000007642)	CERS2 (ENSAPEG00000007683) #23	arnt (ENSAPEG00000007716) #20	setdb1b (ENSAPEG00000007774) #22	ENSAPEG00000007964	ntd5 (ENSAPEG00000008003)	prpf31 (ENSAPEG00000008035)	ENSAPEG00000008083	ENSAPEG00000008103	leng1 (ENSAPEG00000008114)	ENSAPEG00000008121	mboat7 (ENSAPEG00000008135)	rps9 (ENSAPEG00000008214)	rbfox1l (ENSAPEG00000008232)	leng8 (ENSAPEG00000008289)	cdc42ep5 (ENSAPEG00000008306)	grwd1 (ENSAPEG00000008321)	ENSAPEG00000008358	flcn (ENSAPEG00000008391)
Spiny chromis	MODERN SPECIES	1866														CERS2 (ENSAPOG00000015937) #23	arnt (ENSAPOG00000016211) #20	setdb1b (ENSAPOG00000016228) #22	ENSAPOG00000016243	clk2b (ENSAPOG00000016282)
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Tetraodontidae	ANCESTRAL SPECIES	25	ENSGT00940000166290	ENSGT00440000033697	ENSGT00940000157871.h.a	ENSGT00940000156612	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Tetraodon	MODERN SPECIES	23	casp2 (ENSTNIG00000008051)	ENSTNIG00000008052	gstk1 (ENSTNIG00000001719)	styk1b (ENSTNIG00000008053)	ENSTNIG00000008054	crabp2a (ENSTNIG00000008055)	ca14 (ENSTNIG00000008056)	ENSTNIG00000008057	prpf3 (ENSTNIG00000008058) #8	ENSTNIG00000008059 #9	ENSTNIG00000008060	ENSTNIG00000008061	CELF3 (ENSTNIG00000008062)	CERS2 (ENSTNIG00000008063) #23	arnt (ENSTNIG00000008064) #20	setdb1b (ENSTNIG00000008065) #22	ENSTNIG00000008066	clk2b (ENSTNIG00000008067)	cyp11c1 (ENSTNIG00000008068)	pklr (ENSTNIG00000008069)	ENSTNIG00000008070	zbtb7b (ENSTNIG00000008071)	khdc4 (ENSTNIG00000008072)	ENSTNIG00000008073	KCNJ14 (ENSTNIG00000008074)	ENSTNIG00000008075	rpl18 (ENSTNIG00000008076)	SPHK2 (ENSTNIG00000008077)	CYTH2 (ENSTNIG00000008078)	ENSTNIG00000000635	zgc:158689 (ENSTNIG00000008079)
Fugu	MODERN SPECIES	19	prpf3 (ENSTRUG00000033026) #8	ENSTRUG00000015004	gstk1 (ENSTRUG00000014778)	styk1b (ENSTRUG00000028828)	phc1 (ENSTRUG00000031572)	crabp2a (ENSTRUG00000014873)	ca14 (ENSTRUG00000014893)	CIART (ENSTRUG00000032482)	prpf3 (ENSTRUG00000014923) #8	RPRD2 (ENSTRUG00000023474) #9	ENSTRUG00000029268	ENSTRUG00000014189	CELF3 (ENSTRUG00000014225)	CERS2 (ENSTRUG00000014385) #23	arnt (ENSTRUG00000014504) #20	setdb1b (ENSTRUG00000014641) #22	ENSTRUG00000026274	cyp11c1 (ENSTRUG00000014845)	pklr (ENSTRUG00000014910)	zbtb7b (ENSTRUG00000031262)	NDUFV1 (ENSTRUG00000032214)	ENSTRUG00000015115	ENSTRUG00000029166	ENSTRUG00000029074	ENSTRUG00000015194	ENSTRUG00000030991	si:ch211-120k19.1 (ENSTRUG00000015593)	rpl18 (ENSTRUG00000015604)	SPHK2 (ENSTRUG00000015629)	CYTH2 (ENSTRUG00000027446)	ENSTRUG00000015681
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Ballan wrasse	MODERN SPECIES	97	GBA1 (ENSLBEG00000026624)	rnf115a (ENSLBEG00000026606)	polr3c (ENSLBEG00000026567)	ITGA10 (ENSLBEG00000026514)	crabp2a (ENSLBEG00000026486)	ENSLBEG00000026474	ca14 (ENSLBEG00000026406)	CIART (ENSLBEG00000026371)	prpf3 (ENSLBEG00000026310) #8	RPRD2 (ENSLBEG00000026261) #9	ENSLBEG00000026238	ENSLBEG00000026210	CELF3 (ENSLBEG00000026140)	CERS2 (ENSLBEG00000026082) #23	arnt (ENSLBEG00000026037) #20	setdb1b (ENSLBEG00000025862) #22	ENSLBEG00000025807	clk2b (ENSLBEG00000025773)	cyp11c1 (ENSLBEG00000025730)	pklr (ENSLBEG00000025690)	ENSLBEG00000025667	zbtb7b (ENSLBEG00000025578)	NDUFV1 (ENSLBEG00000025548)	khdc4 (ENSLBEG00000025524)	ENSLBEG00000025510	ENSLBEG00000025488	ENSLBEG00000025408	si:ch211-120k19.1 (ENSLBEG00000025378)	rpl18 (ENSLBEG00000025339)	ENSLBEG00000025310	ENSLBEG00000025298
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
European seabass	MODERN SPECIES	6	ENSDLAG00005011394	dap3 (ENSDLAG00005011245)	ENSDLAG00005011233	rnf115a (ENSDLAG00005011219)	polr3c (ENSDLAG00005011069)	ITGA10 (ENSDLAG00005009841)	crabp2a (ENSDLAG00005009798)	ENSDLAG00005009781	CIART (ENSDLAG00005009769)	ENSDLAG00005009487 #8	RPRD2 (ENSDLAG00005033013) #9	ENSDLAG00005007823	ENSDLAG00005007638	ENSDLAG00005007549	ENSDLAG00005007305 #20	ENSDLAG00005006849 #22	ENSDLAG00005033042	clk2b (ENSDLAG00005006824)	ENSDLAG00005006550	pklr (ENSDLAG00005005628)	ENSDLAG00005029138	ENSDLAG00005026831	ENSDLAG00005004491	ENSDLAG00005004359	ENSDLAG00005029454	ENSDLAG00005031381	ENSDLAG00005006034	si:ch211-120k19.1 (ENSDLAG00005005942)	rpl18 (ENSDLAG00005005893)	ENSDLAG00005005880	ENSDLAG00005003153
Large yellow croaker	MODERN SPECIES	484	GBA1 (ENSLCRG00005008261)	rnf115a (ENSLCRG00005008231)	polr3c (ENSLCRG00005008200)	ITGA10 (ENSLCRG00005008129)	crabp2a (ENSLCRG00005008118)	ENSLCRG00005008115	ca14 (ENSLCRG00005008112)	ENSLCRG00005008109	prpf3 (ENSLCRG00005008101) #8	ENSLCRG00005008092 #9	ENSLCRG00005006911	ENSLCRG00005006884	CELF3 (ENSLCRG00005006865)	CERS2 (ENSLCRG00005006848) #23	arnt (ENSLCRG00005006183) #20	setdb1b (ENSLCRG00005005494) #22	cyp11c1 (ENSLCRG00005005457)	pklr (ENSLCRG00005005411)	ENSLCRG00005005399	zbtb7b (ENSLCRG00005005396)	NDUFV1 (ENSLCRG00005005054)	khdc4 (ENSLCRG00005005048)	ENSLCRG00005005047	ENSLCRG00005005046	ENSLCRG00005005045	ENSLCRG00005005043	si:ch211-120k19.1 (ENSLCRG00005005041)	rpl18 (ENSLCRG00005005039)	ENSLCRG00005005038	CYTH2 (ENSLCRG00005000886)	ENSLCRG00005000654
Gilthead seabream	MODERN SPECIES	8	fdps (ENSSAUG00010015664)	ENSSAUG00010015770	ENSSAUG00010015774	GBA1 (ENSSAUG00010015806)	rnf115a (ENSSAUG00010016057)	polr3c (ENSSAUG00010016062)	ITGA10 (ENSSAUG00010016335)	crabp2a (ENSSAUG00010016437)	ENSSAUG00010016443	ca14 (ENSSAUG00010016450)	ENSSAUG00010016459	prpf3 (ENSSAUG00010016468) #8	RPRD2 (ENSSAUG00010016655) #9	ENSSAUG00010016669	ENSSAUG00010017149 #20	setdb1b (ENSSAUG00010017197) #22	ENSSAUG00010017900	clk2b (ENSSAUG00010017904)	cyp11c1 (ENSSAUG00010017931)	pklr (ENSSAUG00010018486)	ENSSAUG00010018921	zbtb7b (ENSSAUG00010018923)	NDUFV1 (ENSSAUG00010018928)	khdc4 (ENSSAUG00010019036)	ENSSAUG00010019041	ENSSAUG00010019044	ENSSAUG00010019064	si:ch211-120k19.1 (ENSSAUG00010019110)	rpl18 (ENSSAUG00010019119)	ENSSAUG00010019124	CYTH2 (ENSSAUG00010019151)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00940000164936.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Lumpfish	MODERN SPECIES	7	dap3 (ENSCLMG00005002077)	GBA1 (ENSCLMG00005002138)	rnf115a (ENSCLMG00005002402)	polr3c (ENSCLMG00005002406)	ITGA10 (ENSCLMG00005002630)	crabp2a (ENSCLMG00005002635)	ca14 (ENSCLMG00005002637)	ENSCLMG00005002641	prpf3 (ENSCLMG00005002646) #8	ENSCLMG00005002666 #9	ENSCLMG00005002688	ENSCLMG00005008803	CELF3 (ENSCLMG00005008804)	CERS2 (ENSCLMG00005008805) #23	arnt (ENSCLMG00005008812) #20	setdb1b (ENSCLMG00005010098) #22	clk2b (ENSCLMG00005010167)	cyp11c1 (ENSCLMG00005010177)	pklr (ENSCLMG00005010199)	ENSCLMG00005010269	zbtb7b (ENSCLMG00005010275)	NDUFV1 (ENSCLMG00005010282)	khdc4 (ENSCLMG00005010289)	ENSCLMG00005010350	ENSCLMG00005010352	ENSCLMG00005010494	si:ch211-120k19.1 (ENSCLMG00005020202)	rpl18 (ENSCLMG00005020204)	ENSCLMG00005020207	CYTH2 (ENSCLMG00005020231)	ENSCLMG00005020670
Stickleback	MODERN SPECIES	19	ENSGACG00000011873	dap3 (ENSGACG00000011859)	GBA1 (ENSGACG00000011848)	rnf115a (ENSGACG00000011841)	polr3c (ENSGACG00000011829)	ITGA10 (ENSGACG00000011820)	crabp2a (ENSGACG00000011813)	ca14 (ENSGACG00000011803)	prpf3 (ENSGACG00000011792) #8	ENSGACG00000011789 #9	ENSGACG00000011734	ENSGACG00000011722	CELF3 (ENSGACG00000011707)	CERS2 (ENSGACG00000011695) #23	arnt (ENSGACG00000011686) #20	setdb1b (ENSGACG00000011675) #22	ENSGACG00000011670	clk2b (ENSGACG00000011669)	ENSGACG00000011666	cyp11c1 (ENSGACG00000011657)	pklr (ENSGACG00000011641)	ENSGACG00000011639	zbtb7b (ENSGACG00000011635)	khdc4 (ENSGACG00000011621)	ENSGACG00000011620	ENSGACG00000011616	ENSGACG00000011600	si:ch211-120k19.1 (ENSGACG00000011594)	rpl18 (ENSGACG00000011547)	SPHK2 (ENSGACG00000011540)	CYTH2 (ENSGACG00000011515)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074	ENSGT01060000248591.b.b
Channel bull blenny	MODERN SPECIES	7	GBA1 (ENSCGOG00000005999)	rnf115a (ENSCGOG00000005990)	polr3c (ENSCGOG00000005762)	ITGA10 (ENSCGOG00000005744)	crabp2a (ENSCGOG00000005736)	ca14 (ENSCGOG00000005720)	CIART (ENSCGOG00000005717)	prpf3 (ENSCGOG00000005098) #8	ENSCGOG00000005088 #9	ENSCGOG00000005086 #9	ENSCGOG00000004683	ENSCGOG00000004667	CELF3 (ENSCGOG00000003981)	CERS2 (ENSCGOG00000003927) #23	arnt (ENSCGOG00000002983) #20	setdb1b (ENSCGOG00000002878) #22	clk2b (ENSCGOG00000002513)	cyp11c1 (ENSCGOG00000002436)	pklr (ENSCGOG00000002409)	ENSCGOG00000002358	zbtb7b (ENSCGOG00000002355)	NDUFV1 (ENSCGOG00000001787)	khdc4 (ENSCGOG00000001720)	ENSCGOG00000001715	ENSCGOG00000001620	ENSCGOG00000019495	si:ch211-120k19.1 (ENSCGOG00000019466)	rpl18 (ENSCGOG00000019459)	ENSCGOG00000019457	CYTH2 (ENSCGOG00000018086)	ENSCGOG00000018056
Pike perch	MODERN SPECIES	15	GBA1 (ENSSLUG00000005653)	rnf115a (ENSSLUG00000005724)	polr3c (ENSSLUG00000005739)	ITGA10 (ENSSLUG00000005771)	crabp2a (ENSSLUG00000005867)	ca14 (ENSSLUG00000005873)	ENSSLUG00000005895	prpf3 (ENSSLUG00000005921) #8	ENSSLUG00000005975	ENSSLUG00000006094	ENSSLUG00000008552	CELF3 (ENSSLUG00000008730)	CERS2 (ENSSLUG00000008735) #23	ENSSLUG00000008743	arnt (ENSSLUG00000008830) #20	setdb1b (ENSSLUG00000010791) #22	clk2b (ENSSLUG00000011632)	cyp11c1 (ENSSLUG00000012330)	pklr (ENSSLUG00000012509)	ENSSLUG00000014327	zbtb7b (ENSSLUG00000014404)	NDUFV1 (ENSSLUG00000014418)	khdc4 (ENSSLUG00000014601)	ENSSLUG00000014607	ENSSLUG00000014612	MYH14 (ENSSLUG00000014628)	si:ch211-120k19.1 (ENSSLUG00000014744)	rpl18 (ENSSLUG00000014754)	ENSSLUG00000014803	CYTH2 (ENSSLUG00000014863)	ENSSLUG00000016205
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838	ENSGT00390000012976
Climbing perch	MODERN SPECIES	7	ENSATEG00000023624	rnf115a (ENSATEG00000023621)	polr3c (ENSATEG00000023618)	ITGA10 (ENSATEG00000023613)	crabp2a (ENSATEG00000023607)	ENSATEG00000023603	ENSATEG00000023599	CIART (ENSATEG00000029124)	ENSATEG00000023583 #8	RPRD2 (ENSATEG00000023579) #9	ENSATEG00000023568	ENSATEG00000023565	ENSATEG00000023560	ENSATEG00000023554 #23	ENSATEG00000023530 #20	ENSATEG00000023520 #22	clk2b (ENSATEG00000023506)	ENSATEG00000023362	pklr (ENSATEG00000023326)	ENSATEG00000023315	ENSATEG00000023301	ENSATEG00000029622	ENSATEG00000022961	ENSATEG00000022951	ENSATEG00000027391	ENSATEG00000022913	si:ch211-120k19.1 (ENSATEG00000022896)	rpl18 (ENSATEG00000022890)	ENSATEG00000022881	ENSATEG00000022859	ENSATEG00000022812
Siamese fighting fish	MODERN SPECIES	7	GBA1 (ENSBSLG00000024067)	rnf115a (ENSBSLG00000024055)	polr3c (ENSBSLG00000024030)	ITGA10 (ENSBSLG00000023999)	ENSBSLG00000023995	crabp2a (ENSBSLG00000023990)	ca14 (ENSBSLG00000023965)	CIART (ENSBSLG00000023958)	prpf3 (ENSBSLG00000023892) #8	RPRD2 (ENSBSLG00000023861) #9	ENSBSLG00000023026	ADAMTSL4 (ENSBSLG00000022961) #13	CELF3 (ENSBSLG00000022896)	CERS2 (ENSBSLG00000022825) #23	arnt (ENSBSLG00000022577) #20	setdb1b (ENSBSLG00000022420) #22	ENSBSLG00000022373	clk2b (ENSBSLG00000022331)	ENSBSLG00000022183	cyp11c1 (ENSBSLG00000021763)	pklr (ENSBSLG00000021417)	ENSBSLG00000021380	ZBTB7B (ENSBSLG00000021370)	ENSBSLG00000021238	khdc4 (ENSBSLG00000021116)	ENSBSLG00000020978	KCNJ14 (ENSBSLG00000020936)	ENSBSLG00000019939	ENSBSLG00000019863	si:ch211-120k19.1 (ENSBSLG00000019854)	rpl18 (ENSBSLG00000019796)
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000014708	rnf115a (ENSMAMG00000027527)	polr3c (ENSMAMG00000014770)	ITGA10 (ENSMAMG00000014814)	crabp2a (ENSMAMG00000025387)	ENSMAMG00000014912	ENSMAMG00000014923	CIART (ENSMAMG00000014954)	ENSMAMG00000014968 #8	RPRD2 (ENSMAMG00000015021) #9	ENSMAMG00000015032	ENSMAMG00000015054	ENSMAMG00000015079	ENSMAMG00000015125 #23	ENSMAMG00000015157 #20	ENSMAMG00000015176 #22	clk2b (ENSMAMG00000015189)	ENSMAMG00000025575	cyp11c1 (ENSMAMG00000015245)	pklr (ENSMAMG00000019025)	ENSMAMG00000019112	ENSMAMG00000019119	ENSMAMG00000019130	ENSMAMG00000019148	ENSMAMG00000019158	ENSMAMG00000019167	ENSMAMG00000019178	si:ch211-120k19.1 (ENSMAMG00000025726)	rpl18 (ENSMAMG00000019271)	ENSMAMG00000019294	ENSMAMG00000019303
Carangaria	ANCESTRAL SPECIES	1	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00390000011379	ENSGT00400000023815	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Seriola	ANCESTRAL SPECIES	28	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Yellowtail amberjack	MODERN SPECIES	2521	GBA1 (ENSSLDG00000015679)	rnf115a (ENSSLDG00000015661)	polr3c (ENSSLDG00000015614)	ITGA10 (ENSSLDG00000015567)	crabp2a (ENSSLDG00000015550)	ENSSLDG00000015537	ca14 (ENSSLDG00000015501)	CIART (ENSSLDG00000015471)	prpf3 (ENSSLDG00000015423) #8	RPRD2 (ENSSLDG00000015396) #9	ENSSLDG00000015367	ENSSLDG00000015340	CELF3 (ENSSLDG00000015302)	CERS2 (ENSSLDG00000015279) #23	arnt (ENSSLDG00000015250) #20	setdb1b (ENSSLDG00000015209) #22	ENSSLDG00000015189	clk2b (ENSSLDG00000015146)	cyp11c1 (ENSSLDG00000015119)	pklr (ENSSLDG00000015078)	ENSSLDG00000015059	zbtb7b (ENSSLDG00000015043)	NDUFV1 (ENSSLDG00000015014)	khdc4 (ENSSLDG00000014999)	ENSSLDG00000014987	ENSSLDG00000014974	ENSSLDG00000014926	si:ch211-120k19.1 (ENSSLDG00000014897)	rpl18 (ENSSLDG00000014880)	ENSSLDG00000014864	CYTH2 (ENSSLDG00000014835)
Greater amberjack	MODERN SPECIES	88	rnf115a (ENSSDUG00000006528)	polr3c (ENSSDUG00000006590)	ITGA10 (ENSSDUG00000006650)	crabp2a (ENSSDUG00000006713)	ENSSDUG00000006722	ca14 (ENSSDUG00000006746)	CIART (ENSSDUG00000006818)	prpf3 (ENSSDUG00000006840) #8	ENSSDUG00000007143	RPRD2 (ENSSDUG00000007155) #9	ENSSDUG00000007180	ENSSDUG00000007219	CELF3 (ENSSDUG00000007239)	CERS2 (ENSSDUG00000007278) #23	arnt (ENSSDUG00000007319) #20	setdb1b (ENSSDUG00000007513) #22	clk2b (ENSSDUG00000007545)	cyp11c1 (ENSSDUG00000007605)	pklr (ENSSDUG00000007651)	ENSSDUG00000007688	zbtb7b (ENSSDUG00000007766)	NDUFV1 (ENSSDUG00000007778)	khdc4 (ENSSDUG00000007799)	ENSSDUG00000007819	KCNJ14 (ENSSDUG00000007833)	ENSSDUG00000007861	si:ch211-120k19.1 (ENSSDUG00000007939)	rpl18 (ENSSDUG00000007945)	ENSSDUG00000007958	CYTH2 (ENSSDUG00000007972)	ENSSDUG00000008043
Barramundi perch	MODERN SPECIES	185	GBA1 (ENSLCAG00010025081)	rnf115a (ENSLCAG00010025041)	polr3c (ENSLCAG00010025028)	ITGA10 (ENSLCAG00010024930)	crabp2a (ENSLCAG00010024874)	ENSLCAG00010024871	ca14 (ENSLCAG00010024866)	CIART (ENSLCAG00010024858)	prpf3 (ENSLCAG00010024818) #8	RPRD2 (ENSLCAG00010024785) #9	ENSLCAG00010024719	ENSLCAG00010024687	CELF3 (ENSLCAG00010024666)	CERS2 (ENSLCAG00010024661) #23	arnt (ENSLCAG00010024634) #20	setdb1b (ENSLCAG00010024595) #22	ENSLCAG00010024574	clk2b (ENSLCAG00010024568)	cyp11c1 (ENSLCAG00010024554)	pklr (ENSLCAG00010024465)	ENSLCAG00010024419	zbtb7b (ENSLCAG00010024415)	NDUFV1 (ENSLCAG00010024393)	khdc4 (ENSLCAG00010024376)	ENSLCAG00010024372	KCNJ14 (ENSLCAG00010024369)	ENSLCAG00010023843	si:ch211-120k19.1 (ENSLCAG00010023644)	rpl18 (ENSLCAG00010023638)	ENSLCAG00010023634	CYTH2 (ENSLCAG00010023199)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00940000177218	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Tongue sole	MODERN SPECIES	4	rnf115a (ENSCSEG00000002414)	polr3c (ENSCSEG00000002425)	ITGA10 (ENSCSEG00000002443)	crabp2a (ENSCSEG00000002466)	ENSCSEG00000002472	ca14 (ENSCSEG00000002477)	CIART (ENSCSEG00000002522)	prpf3 (ENSCSEG00000002532) #8	RPRD2 (ENSCSEG00000002555) #9	ENSCSEG00000002562	ENSCSEG00000002578	CELF3 (ENSCSEG00000002581)	CERS2 (ENSCSEG00000002591) #23	arnt (ENSCSEG00000002962) #20	ENSCSEG00000002976	setdb1b (ENSCSEG00000002988) #22	ENSCSEG00000003063	clk2b (ENSCSEG00000003066)	cyp11c1 (ENSCSEG00000003112)	pklr (ENSCSEG00000003394)	ENSCSEG00000003427	zbtb7b (ENSCSEG00000003439)	khdc4 (ENSCSEG00000003443)	ENSCSEG00000003478	ENSCSEG00000003488	ENSCSEG00000003501	si:ch211-120k19.1 (ENSCSEG00000003523)	ENSCSEG00000003527	CYTH2 (ENSCSEG00000003531)	ENSCSEG00000003541	zgc:158689 (ENSCSEG00000003557)
Turbot	MODERN SPECIES		rnf115a (ENSSMAG00000016084)	polr3c (ENSSMAG00000016000)	ITGA10 (ENSSMAG00000015935)	ENSSMAG00000030369	ENSSMAG00000015902	ENSSMAG00000015835	CIART (ENSSMAG00000015791)	ENSSMAG00000015739 #8	ENSSMAG00000030192	RPRD2 (ENSSMAG00000025690) #9	ENSSMAG00000015682	ENSSMAG00000015652	ENSSMAG00000015634	ENSSMAG00000015501 #23	ENSSMAG00000015418 #20	ENSSMAG00000015398 #22	clk2b (ENSSMAG00000015365)	ENSSMAG00000014255	pklr (ENSSMAG00000014175)	ENSSMAG00000014167	ENSSMAG00000014148	ENSSMAG00000014119	ENSSMAG00000014077	ENSSMAG00000014066	ENSSMAG00000014045	ENSSMAG00000014036	ENSSMAG00000013502	si:ch211-120k19.1 (ENSSMAG00000013428)	rpl18 (ENSSMAG00000013409)	ENSSMAG00000030836	ENSSMAG00000028638
Tiger tail seahorse	MODERN SPECIES	300	ENSHCOG00000013885	ENSHCOG00000013900	crabp2a (ENSHCOG00000013915)	ENSHCOG00000013921	ca14 (ENSHCOG00000014032)	CIART (ENSHCOG00000014049)	prpf3 (ENSHCOG00000014058) #8	ENSHCOG00000014067	ENSHCOG00000014082 #9	ENSHCOG00000014119	ENSHCOG00000014130	ENSHCOG00000014147	CELF3 (ENSHCOG00000000397)	CERS2 (ENSHCOG00000014180) #23	arnt (ENSHCOG00000014536) #20	setdb1b (ENSHCOG00000014567) #22	clk2b (ENSHCOG00000014646)	cyp11c1 (ENSHCOG00000014670)	pklr (ENSHCOG00000014717)	ENSHCOG00000014746	zbtb7b (ENSHCOG00000014760)	cyp4t8 (ENSHCOG00000015162)	cyp4t8 (ENSHCOG00000015565)	med18 (ENSHCOG00000015588)	ENSHCOG00000015599	SCMH1 (ENSHCOG00000015614)	cited4b (ENSHCOG00000015625)	ctps1b (ENSHCOG00000015683)	rab42b (ENSHCOG00000015692)	taf12 (ENSHCOG00000015844)	ENSHCOG00000015866
Pinecone sodierfish	MODERN SPECIES	7	GBA1 (ENSMMDG00005016674)	rnf115a (ENSMMDG00005016848)	polr3c (ENSMMDG00005001235)	ITGA10 (ENSMMDG00005001325)	crabp2a (ENSMMDG00005001337)	ENSMMDG00005001343	ca14 (ENSMMDG00005001354)	CIART (ENSMMDG00005001358)	prpf3 (ENSMMDG00005001387) #8	RPRD2 (ENSMMDG00005001477) #9	ENSMMDG00005001699	ENSMMDG00005006773	CELF3 (ENSMMDG00005006781)	CERS2 (ENSMMDG00005006785) #23	arnt (ENSMMDG00005006813) #20	setdb1b (ENSMMDG00005006874) #22	ENSMMDG00005007077	clk2b (ENSMMDG00005007081)	ENSMMDG00005007087	cyp11c1 (ENSMMDG00005007096)	pklr (ENSMMDG00005007168)	ENSMMDG00005007176	zbtb7b (ENSMMDG00005007179)	NDUFV1 (ENSMMDG00005007186)	khdc4 (ENSMMDG00005007296)	ENSMMDG00005007300	ENSMMDG00005007301	ENSMMDG00005007305	si:ch211-120k19.1 (ENSMMDG00005007320)	rpl18 (ENSMMDG00005007327)	ENSMMDG00005007333
Cod	MODERN SPECIES	2	mlf2 (ENSGMOG00000015661)	cdc42l (ENSGMOG00000015685)	wnt4b (ENSGMOG00000015702)	ENSGMOG00000015722	ptpn6 (ENSGMOG00000015780)	rbp5 (ENSGMOG00000015812)	ENSGMOG00000026565	ENSGMOG00000033939	c1r (ENSGMOG00000015841)	ENSGMOG00000032831	ENSGMOG00000006214 #9	ENSGMOG00000006184	ENSGMOG00000006107	ENSGMOG00000006087 #23	ENSGMOG00000006058 #20	ENSGMOG00000005993 #22	ENSGMOG00000022689	clk2b (ENSGMOG00000005932)	ENSGMOG00000005891	pklr (ENSGMOG00000005863)	ENSGMOG00000005846	ENSGMOG00000033220	ENSGMOG00000005710	ENSGMOG00000005673	ENSGMOG00000005657	ENSGMOG00000005645	ENSGMOG00000005568	si:ch211-120k19.1 (ENSGMOG00000005544)	rpl18 (ENSGMOG00000005521)	ENSGMOG00000032629	ENSGMOG00000005478
Osteoglossiformes	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000166610	ENSGT00390000018360.a	ENSGT00390000011497 #8	ENSGT00950000183094.a.m #9	ENSGT00940000159348	ENSGT00940000161136 #13	ENSGT00940000154716	ENSGT01030000234515.a.b.a.a.f #23	ENSGT00940000157585 #20	ENSGT00940000157471.a #22	ENSGT00940000164374.A	ENSGT00940000154947.k	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c.k	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197
P. kingsleyae	MODERN SPECIES	252					ENSPKIG00000010408	ca14 (ENSPKIG00000010425)	mrps21 (ENSPKIG00000010445)	CIART (ENSPKIG00000010455)	prpf3 (ENSPKIG00000010501) #8	RPRD2 (ENSPKIG00000010576) #9	ENSPKIG00000010658	ENSPKIG00000010786 #13	celf3a (ENSPKIG00000010833)	CERS2 (ENSPKIG00000010860) #23	arnt (ENSPKIG00000010903) #20	setdb1b (ENSPKIG00000010963) #22	ENSPKIG00000011018	clk2a (ENSPKIG00000011053)	ENSPKIG00000011075	cyp11c1 (ENSPKIG00000011095)	pklr (ENSPKIG00000011117)	ENSPKIG00000011152	zbtb7b (ENSPKIG00000011228)	khdc4 (ENSPKIG00000011269)	ENSPKIG00000011318	ENSPKIG00000011337	KCNJ14 (ENSPKIG00000011360)	ENSPKIG00000011407	si:ch211-120k19.1 (ENSPKIG00000011515)	SPHK2 (ENSPKIG00000011535)	ENSPKIG00000011548
Asian bonytongue	MODERN SPECIES	9	GBA1 (ENSSFOG00015021833)	rnf115a (ENSSFOG00015021845)	polr3c (ENSSFOG00015021863)	ITGA10 (ENSSFOG00015021906)	crabp2a (ENSSFOG00015021942)	ca14 (ENSSFOG00015021971)	ENSSFOG00015021982	CIART (ENSSFOG00015021990)	prpf3 (ENSSFOG00015022014) #8	RPRD2 (ENSSFOG00015022056) #9	ENSSFOG00015022086	ENSSFOG00015022109 #13	celf3a (ENSSFOG00015022130)	CERS2 (ENSSFOG00015030046) #23	arnt (ENSSFOG00015022161) #20	setdb1b (ENSSFOG00015022183) #22	trim108 (ENSSFOG00015022196)	ENSSFOG00015031896	clk2a (ENSSFOG00015022213)	ENSSFOG00015022224	cyp11c1 (ENSSFOG00015022229)	pklr (ENSSFOG00015022235)	ENSSFOG00015022252	zbtb7b (ENSSFOG00015030270)	NDUFV1 (ENSSFOG00015022273)	khdc4 (ENSSFOG00015022282)	ENSSFOG00015022296	ENSSFOG00015022316	ENSSFOG00015022350	si:ch211-120k19.1 (ENSSFOG00015022434)	rpl18 (ENSSFOG00015022442)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157471.b #22
Clupeocephala	ANCESTRAL SPECIES	764																ENSGT00940000157471.b #22	ENSGT00940000154947.k
Otomorpha	ANCESTRAL SPECIES	662																ENSGT00940000157471.b #22	ENSGT00940000154947.k	ENSGT01060000248708.b
Clupeiformes	ANCESTRAL SPECIES	699																ENSGT00940000157471.b #22	ENSGT00940000154947.k	ENSGT01060000248708.b
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	12	cacng6a (ENSDCDG00000025730)	ENSDCDG00000025734	slc2a3a (ENSDCDG00000025784)	ENSDCDG00000027332	clcn1a (ENSDCDG00000027369)	FAM131B (ENSDCDG00000029813)	ing4 (ENSDCDG00000029818)	IFFO1 (ENSDCDG00000029819)	vamp1a (ENSDCDG00000029822)	ENSDCDG00000029825	si:dkey-211g8.1 (ENSDCDG00000029827)	usf2 (ENSDCDG00000024115)	si:dkey-211g8.6 (ENSDCDG00000024134)	tekt2 (ENSDCDG00000024138)	cdc20 (ENSDCDG00000024140)	setdb1a (ENSDCDG00000024143) #22	ENSDCDG00000024146	clk2a (ENSDCDG00000024158)	si:ch211-81a5.8 (ENSDCDG00000026315)	znf687b (ENSDCDG00000026318)	hax1 (ENSDCDG00000026320)	ubap2l (ENSDCDG00000026329)	ENSDCDG00000026346	cgnb (ENSDCDG00000026348)	pygo2 (ENSDCDG00000026356)	s100s (ENSDCDG00000026359)	s100u (ENSDCDG00000026362)	s100a11 (ENSDCDG00000026364)	ENSDCDG00000026366	cks1b (ENSDCDG00000026369)	si:dkey-266f7.9 (ENSDCDG00000026373)
Denticle herring	MODERN SPECIES	12	C1QL2 (ENSDCDG00000034850)	insig2 (ENSDCDG00000034849)	ccdc93 (ENSDCDG00000034741)	ddx18 (ENSDCDG00000034704)	ENSDCDG00000034555	ENSDCDG00000033821	actr3 (ENSDCDG00000033512)	ENSDCDG00000033491	ENSDCDG00000033488	atp9b (ENSDCDG00000031729)	nfatc1 (ENSDCDG00000031606)	slc52a2 (ENSDCDG00000031600)	ENSDCDG00000031598	ENSDCDG00000031594	ENSDCDG00000031590	ENSDCDG00000031587 #22	ENSDCDG00000031582	tekt2 (ENSDCDG00000031577)	olah (ENSDCDG00000031575)	ago3b (ENSDCDG00000028648)	slc9a3.1 (ENSDCDG00000028338)	ENSDCDG00000028334	lipea (ENSDCDG00000028235)	ENSDCDG00000028055	tomm40l (ENSDCDG00000028040)	ENSDCDG00000028025	apoa4a (ENSDCDG00000028021)	apoea (ENSDCDG00000027971)	psmd4a (ENSDCDG00000027909)	cers2a (ENSDCDG00000027900) #23	celf3a (ENSDCDG00000027831)
Atlantic herring	MODERN SPECIES	10	sema6d (ENSCHAG00000007598) #34	ENSCHAG00000007758	tnfaip8l2a (ENSCHAG00000007782) #35	ENSCHAG00000007801	LIX1L (ENSCHAG00000007816)	sall3b (ENSCHAG00000007900)	atp9b (ENSCHAG00000008142)	nfatc1 (ENSCHAG00000013880)	ENSCHAG00000013905	slc52a2 (ENSCHAG00000014082)	ENSCHAG00000014096	ENSCHAG00000014102	ENSCHAG00000014118	ENSCHAG00000014142	ENSCHAG00000014351	setdb1a (ENSCHAG00000014402) #22	clk2a (ENSCHAG00000014565)	si:ch211-81a5.8 (ENSCHAG00000016779)	ENSCHAG00000016811	zfpm2b (ENSCHAG00000017466)	lrp12 (ENSCHAG00000017476)	DCSTAMP (ENSCHAG00000017523)	ENSCHAG00000017572	slc25a32a (ENSCHAG00000018728)	cthrc1a (ENSCHAG00000018745)	mc5ra (ENSCHAG00000018780)	rnmt (ENSCHAG00000018809)	fam210aa (ENSCHAG00000018827)	LDLRAD4 (ENSCHAG00000018847)	seh1l (ENSCHAG00000018866)	ENSCHAG00000018934
Otophysi	ANCESTRAL SPECIES	64	ENSGT00940000158021.c	ENSGT00940000165795	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e #23	ENSGT00940000154716.gc.b	ENSGT00950000183094.a.n #9	ENSGT00390000018360.b	ENSGT00940000166610	ENSGT00940000157619.a.b	ENSGT00940000160917	ENSGT00940000157203.d	ENSGT00940000156698.c	ENSGT00440000034367	ENSGT00940000157471.b #22	ENSGT00940000154947.k	ENSGT01060000248708.b	ENSGT00940000154743.A.a.b	ENSGT00390000010641.i.b	ENSGT00940000163756.c.a	ENSGT01030000235274	ENSGT01010000223632	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b	ENSGT00940000153298.i.b	ENSGT00940000159033	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00940000160313
Characiphysae	ANCESTRAL SPECIES	75	ENSGT00940000165795	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e #23	ENSGT00940000154716.gc.b	ENSGT00940000154716.hc.b	ENSGT00950000183094.a.n #9	ENSGT00390000018360.b	ENSGT00940000166610	ENSGT00940000157619.a.b	ENSGT00940000160917	ENSGT00940000157203.d	ENSGT00940000156698.c	ENSGT00440000034367	ENSGT00940000157471.b #22	ENSGT00940000154947.k	ENSGT01060000248708.b	ENSGT00940000154743.A.a.b	ENSGT00390000010641.i.b	ENSGT00940000163756.c.a	ENSGT01030000235274	ENSGT01010000223632	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b	ENSGT00940000153298.i.b	ENSGT00940000159033	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00390000009359.a.a
Channel catfish	MODERN SPECIES	3	Tekt2 (ENSIPUG00000008755)	olah (ENSIPUG00000008685)	ago3b (ENSIPUG00000008548)	slc9a3.1 (ENSIPUG00000008503)	lipea (ENSIPUG00000008463)	ENSIPUG00000008367	tomm40l (ENSIPUG00000008316)	cers2 (ENSIPUG00000008297) #23	celf3a (ENSIPUG00000008218)	rprd2 (ENSIPUG00000008155) #9	mrps21 (ENSIPUG00000008123)	crabp2 (ENSIPUG00000008111)	scamp3 (ENSIPUG00000008098)	ash1l (ENSIPUG00000007968)	lrrc71 (ENSIPUG00000007933)	setdb1a (ENSIPUG00000007923) #22	clk2a (ENSIPUG00000007888)	si:ch211-81a5.8 (ENSIPUG00000007878)	ENSIPUG00000007871	Ndufv1 (ENSIPUG00000007826)	ENSIPUG00000007805	ENSIPUG00000007783	EFNA1 (ENSIPUG00000007772)	dpm3 (ENSIPUG00000007763)	trim46b (ENSIPUG00000007689)	s100a10a (ENSIPUG00000007659)	Snx27 (ENSIPUG00000007587)	chrna11 (ENSIPUG00000007547)	rps27.1 (ENSIPUG00000007437)	morn3 (ENSIPUG00000007423)	ENSIPUG00000007408
Characiphysae_b	ANCESTRAL SPECIES	61	ENSGT00940000165795	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e #23	ENSGT00940000154716.gc.b	ENSGT00940000154716.hc.b	ENSGT00950000183094.a.n #9	ENSGT00390000018360.b	ENSGT00940000166610	ENSGT00940000157619.a.b	ENSGT00940000160917	ENSGT00940000157203.d	ENSGT00940000156698.c	ENSGT00440000034367	ENSGT00940000157471.b #22	ENSGT00940000154947.k	ENSGT01060000248708.b	ENSGT00940000154743.A.a.b	ENSGT00390000010641.i.b	ENSGT00940000163756.c.a	ENSGT01030000235274	ENSGT01010000223632	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b	ENSGT00940000153298.i.b	ENSGT00940000159033	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a	ENSGT00940000167696	ENSGT00390000009359.a.a
Characoidei	ANCESTRAL SPECIES	82	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182891.b.b.b.b.a.b	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e #23	ENSGT00940000154716.gc.b	ENSGT00940000154716.hc.b	ENSGT00950000183094.a.n #9	ENSGT00390000018360.b	ENSGT00940000166610	ENSGT00940000157619.a.b	ENSGT00940000160917	ENSGT00940000157203.d	ENSGT00940000156698.c	ENSGT00440000034367	ENSGT00940000157471.b #22	ENSGT00940000154947.k	ENSGT01060000248708.b	ENSGT00940000154743.A.a.b	ENSGT00390000010641.i.b	ENSGT00940000163756.c.a.e
Red-bellied piranha	MODERN SPECIES	251	trim46b (ENSPNAG00000017549)	s100a10a (ENSPNAG00000017454)	snx27a (ENSPNAG00000017445)	chrna11 (ENSPNAG00000017403)	rps27.1 (ENSPNAG00000017336)	cers2a (ENSPNAG00000017316) #23	celf3a (ENSPNAG00000017276)	rprd2a (ENSPNAG00000017205) #9	ENSPNAG00000017143	mrps21 (ENSPNAG00000017115)	crabp2b (ENSPNAG00000017056)	scamp3 (ENSPNAG00000003461)	ENSPNAG00000003460	ash1l (ENSPNAG00000016981)	lrrc71 (ENSPNAG00000016823)	setdb1a (ENSPNAG00000003444) #22	clk2a (ENSPNAG00000016768)	si:ch211-81a5.8 (ENSPNAG00000016739)	ENSPNAG00000016712	ndufv1 (ENSPNAG00000016658)	ENSPNAG00000016594
Mexicana tetra	MODERN SPECIES	15	snx27a (ENSAMXG00000009816)	chrna11 (ENSAMXG00000009834)	ENSAMXG00000033744	ENSAMXG00000001908	cers2a (ENSAMXG00000009905) #23	celf3a (ENSAMXG00000009926)	ENSAMXG00000036838	rprd2a (ENSAMXG00000042601) #9	ciarta (ENSAMXG00000035450)	mrps21 (ENSAMXG00000032876)	crabp2b (ENSAMXG00000032195)	scamp3 (ENSAMXG00000032081)	ENSAMXG00000042305	ash1l (ENSAMXG00000009994)	lrrc71 (ENSAMXG00000031291)	setdb1a (ENSAMXG00000010030) #22	clk2a (ENSAMXG00000010041)	si:ch211-81a5.8 (ENSAMXG00000010045)	ENSAMXG00000039788	ENSAMXG00000036542	slc2a3a (ENSAMXG00000009319)	ENSAMXG00000029103	cacng6a (ENSAMXG00000030494)	cacng8a (ENSAMXG00000043635)	cacng7a (ENSAMXG00000029894)	ENSAMXG00000009395	GRIK5 (ENSAMXG00000014408)	ENSAMXG00000043063	GSK3A (ENSAMXG00000014384)	ENSAMXG00000036025	erf (ENSAMXG00000014343)
Electric eel	MODERN SPECIES	59	efna1a (ENSEEEG00000006642)	dpm3 (ENSEEEG00000006645)	trim46b (ENSEEEG00000006649)	s100a10a (ENSEEEG00000006673)	snx27a (ENSEEEG00000006678)	chrna11 (ENSEEEG00000006704)	ENSEEEG00000006713	cers2a (ENSEEEG00000006778) #23	celf3a (ENSEEEG00000006785)	rprd2a (ENSEEEG00000006790) #9	mrps21 (ENSEEEG00000006801)	crabp2b (ENSEEEG00000006804)	scamp3 (ENSEEEG00000006822)	ENSEEEG00000006823	lrrc71 (ENSEEEG00000006827)	setdb1a (ENSEEEG00000006828) #22	ENSEEEG00000006829	clk2a (ENSEEEG00000006851)	ENSEEEG00000007649	ndufv1 (ENSEEEG00000007653)	vamp1a (ENSEEEG00000007690)	IFFO1 (ENSEEEG00000007691)	ENSEEEG00000007706	ing4 (ENSEEEG00000007813)	FAM131B (ENSEEEG00000007815)	clcn1a (ENSEEEG00000007829)	ENSEEEG00000008475	necap1 (ENSEEEG00000008482)	epn1b (ENSEEEG00000008485)
Cyprinoidei	ANCESTRAL SPECIES	33	ENSGT00940000158021.c	ENSGT00940000165795	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e #23	ENSGT00940000154716.gc.b	ENSGT00950000183094.a.n #9	ENSGT00390000018360.b	ENSGT00940000166610	ENSGT00940000157619.a.b	ENSGT00940000160917	ENSGT00940000157203.d	ENSGT00940000156698.c	ENSGT00440000034367	ENSGT00940000157471.b #22	ENSGT00940000154947.k	ENSGT01060000248708.b	ENSGT00940000154743.A.a.b	ENSGT00390000010641.i.b	ENSGT00940000163756.c.a	ENSGT01030000235274.b	ENSGT01030000235274.a	ENSGT01010000223632	ENSGT00940000164382.b.a	ENSGT00510000046803.b.a.b.a	ENSGT00940000159033	ENSGT00950000183106.a.b.a	ENSGT00940000157383.g.a.j	ENSGT00940000167696	ENSGT00940000160313
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	185	ENSGT00940000158021.c.d	ENSGT00940000165795.g.b	ENSGT00950000183212.C.c.a.b	ENSGT00940000164921.b.e	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e.b #23	ENSGT00940000154716.gc.b.b	ENSGT00950000183094.a.n.b #9	ENSGT00390000018360.b.b	ENSGT00940000166610.e.b	ENSGT00940000157619.a.b.a.a	ENSGT00940000160917.p	ENSGT00940000157203.d.a	ENSGT00940000156698.c.b	ENSGT00440000034367.a.b	ENSGT00940000157471.b.c #22	ENSGT00940000154947.k.f	ENSGT01060000248708.b.b	ENSGT00940000154743.A.a.b.b	ENSGT00390000010641.i.b.b	ENSGT00940000163756.c.a.h	ENSGT01030000235274.b.a	ENSGT01030000235274.a.b	ENSGT00510000046803.b.a.b.a.b	ENSGT00940000159033.j
Goldfish	MODERN SPECIES	38	ENSCARG00000023211	edn1 (ENSCARG00000023201)	ENSCARG00000023191	necap1 (ENSCARG00000023130)	epn1b (ENSCARG00000023124)	si:ch211-232m10.6 (ENSCARG00000023117)	rcvrn3 (ENSCARG00000023107)	tmem238a (ENSCARG00000023103)	ccdc106b (ENSCARG00000023094)	u2af2b (ENSCARG00000023057)	cnot3b (ENSCARG00000023031)	ENSCARG00000023012	znf865 (ENSCARG00000023011)	dbpa (ENSCARG00000023004)	lrrc71 (ENSCARG00000022956)	setdb1a (ENSCARG00000022930) #22	clk2a (ENSCARG00000022883)	si:ch211-81a5.8 (ENSCARG00000022865)	ENSCARG00000022844	ndufv1 (ENSCARG00000021898)	ENSCARG00000021677	ENSCARG00000021656	ENSCARG00000021644	vamp1a (ENSCARG00000021633)	IFFO1 (ENSCARG00000021620)	ing4 (ENSCARG00000021590)	ENSCARG00000021574	clcn1a (ENSCARG00000020690)	slc2a3a (ENSCARG00000020585)	ENSCARG00000020574	scamp3 (ENSCARG00000020559)
Cyprininae_a	ANCESTRAL SPECIES	1	ENSGT00940000158021.c.d	ENSGT00940000165795.g.b	ENSGT00950000183212.C.c.a.b	ENSGT00940000164921.b.e	ENSGT00950000182891.b.b.a	ENSGT01030000234515.a.b.a.a.e.b #23	ENSGT00940000154716.gc.b.b	ENSGT00950000183094.a.n.b #9	ENSGT00390000018360.b.b	ENSGT00940000166610.e.b	ENSGT00940000157619.a.b.b	ENSGT00940000157619.a.b.a.a	ENSGT00940000160917.p	ENSGT00940000157203.d.a	ENSGT00940000156698.c.b	ENSGT00940000157471.b.c #22	ENSGT00940000154947.k.f	ENSGT01060000248708.b.b	ENSGT00940000154743.A.a.b.b	ENSGT00390000010641.i.b.b	ENSGT00940000163756.c.a.h	ENSGT01030000235274.b.a.b	ENSGT01030000235274.a.b	ENSGT00510000046803.b.a.b.a.b	ENSGT00940000159033.i.a	ENSGT00950000183106.a.b.a.b	ENSGT00940000157383.g.a.j.a.b	ENSGT00940000167696.b	ENSGT00940000160313.b	ENSGT01060000248591.b.a.b	ENSGT00390000007786.b.h.c
Common carp reference	MODERN SPECIES	31	efna1a (ENSCCRG00000017809)	dpm3 (ENSCCRG00000068446)	trim46b (ENSCCRG00000042143)	s100a10a (ENSCCRG00000069788)	snx27a (ENSCCRG00000042297)	chrna11 (ENSCCRG00000006710)	ENSCCRG00000074680	cers2a (ENSCCRG00000072257) #23	celf3a (ENSCCRG00000076770)	rprd2a (ENSCCRG00000068133) #9	mrps21 (ENSCCRG00000080584)	crabp2b (ENSCCRG00000048557)	scamp3 (ENSCCRG00000049033)	ENSCCRG00000007470	ash1l (ENSCCRG00000076046)	setdb1a (ENSCCRG00000049021) #22	clk2a (ENSCCRG00000048580)	si:ch211-81a5.8 (ENSCCRG00000048562)	ENSCCRG00000076116	ndufv1 (ENSCCRG00000081798)	ENSCCRG00000048536	ENSCCRG00000048531	ENSCCRG00000048530	vamp1a (ENSCCRG00000064123)	ENSCCRG00000074568	ENSCCRG00000048485	ing4 (ENSCCRG00000048533)	ENSCCRG00000048534	clcn1a (ENSCCRG00000078740)	slc2a3a (ENSCCRG00000043784)	ENSCCRG00000003314
Golden-line barbel	MODERN SPECIES	267	si:dkey-266f7.5 (ENSSGRG00000030076)	ENSSGRG00000030078	ENSSGRG00000030081	trim46b (ENSSGRG00000030082)	snx27a (ENSSGRG00000030135)	chrna11 (ENSSGRG00000030472)	ENSSGRG00000030475	cers2a (ENSSGRG00000030503) #23	celf3a (ENSSGRG00000030554)	rprd2a (ENSSGRG00000030806) #9	ciarta (ENSSGRG00000030807)	mrps21 (ENSSGRG00000030808)	crabp2b (ENSSGRG00000030810)	scamp3 (ENSSGRG00000030813)	ash1l (ENSSGRG00000030817)	setdb1a (ENSSGRG00000030842) #22	clk2a (ENSSGRG00000030848)	si:ch211-81a5.8 (ENSSGRG00000031845)	ENSSGRG00000031846	ndufv1 (ENSSGRG00000031847)	ENSSGRG00000031849	ENSSGRG00000031854	ENSSGRG00000031855	ENSSGRG00000031857	IFFO1 (ENSSGRG00000031861)	ing4 (ENSSGRG00000031876)	FAM131B (ENSSGRG00000031877)	clcn1a (ENSSGRG00000031879)	ENSSGRG00000031880	slc2a3a (ENSSGRG00000031889)	ENSSGRG00000031894
Cyprininae	ANCESTRAL SPECIES	307	ENSGT00950000183212.C.c.a.a	ENSGT00940000164921.b.f	ENSGT00950000182891.b.b.b.b.a	ENSGT01030000234515.a.b.a.a.e.a #23	ENSGT00940000154716.gc.b.a	ENSGT00950000183094.a.n.a #9	ENSGT00390000018360.b.a	ENSGT00940000166610.e.a	ENSGT00940000157619.a.b.b	ENSGT00940000166610.f	ENSGT00940000157619.a.b.a.b	ENSGT00940000160917.o	ENSGT00940000157203.d.b	ENSGT00940000156698.c.a	ENSGT00440000034367.a.a	ENSGT00940000157471.b.d #22	ENSGT00940000154947.k.e	ENSGT01060000248708.b.a	ENSGT00940000154743.A.a.b.a	ENSGT00390000010641.i.b.a	ENSGT00940000163756.c.a.g	ENSGT01010000223632	ENSGT00940000164382.b.a.j	ENSGT00510000046803.b.a.b.a.a	ENSGT00940000159033.i.b	ENSGT00950000183106.a.b.a.a	ENSGT00940000157383.g.a.j.a.a	ENSGT00940000167696.a	ENSGT00940000160313.a	ENSGT01060000248591.b.a.a	ENSGT00390000007786.b.h.d
Goldfish	MODERN SPECIES	10	dpm3 (ENSCARG00000016515)	trim46b (ENSCARG00000016523)	s100a10a (ENSCARG00000016534)	snx27a (ENSCARG00000016563)	chrna11 (ENSCARG00000016660)	ENSCARG00000016663	cers2a (ENSCARG00000014414) #23	celf3a (ENSCARG00000014451)	rprd2a (ENSCARG00000014486) #9	ciarta (ENSCARG00000014494)	mrps21 (ENSCARG00000014502)	crabp2b (ENSCARG00000014510)	scamp3 (ENSCARG00000014519)	ash1l (ENSCARG00000014568)	lrrc71 (ENSCARG00000015977)	setdb1a (ENSCARG00000016001) #22	clk2a (ENSCARG00000016064)	si:ch211-81a5.8 (ENSCARG00000016067)	ENSCARG00000016073	ndufv1 (ENSCARG00000016127)	ENSCARG00000016612	NCDN (ENSCARG00000016735)	tfap2e (ENSCARG00000016744)	psmb2 (ENSCARG00000016760)	ENSCARG00000016785	CLSPN (ENSCARG00000016789)	ago4 (ENSCARG00000016810)	ENSCARG00000016917	c19h1orf109 (ENSCARG00000016927)	cdca8 (ENSCARG00000016931)	ENSCARG00000016965
Cyprininae_a	ANCESTRAL SPECIES	52	ENSGT00940000165795.g.a	ENSGT00950000183212.C.c.a.a	ENSGT00940000164921.b.f	ENSGT00950000182891.b.b.b.b.a	ENSGT01030000234515.a.b.a.a.e.a #23	ENSGT00940000154716.gc.b.a	ENSGT00950000183094.a.n.a #9	ENSGT00390000018360.b.a	ENSGT00940000166610.e.a	ENSGT00940000166610.f	ENSGT00940000157619.a.b.a.b	ENSGT00940000160917.o	ENSGT00940000157203.d.b	ENSGT00940000156698.c.a	ENSGT00440000034367.a.a	ENSGT00940000157471.b.d #22	ENSGT00940000154947.k.e	ENSGT01060000248708.b.a	ENSGT00940000154743.A.a.b.a	ENSGT00390000010641.i.b.a	ENSGT00940000163756.c.a.g	ENSGT01010000223632	ENSGT00940000164382.b.a.j	ENSGT00510000046803.b.a.b.a.a	ENSGT00940000159033.i.b	ENSGT00950000183106.a.b.a.a	ENSGT00940000157383.g.a.j.b	ENSGT00940000157383.g.a.j.a.a	ENSGT00940000167696.a	ENSGT00940000160313.a	ENSGT01060000248591.b.a.a
Common carp reference	MODERN SPECIES	12	s100a10a (ENSCCRG00000075828)	snx27a (ENSCCRG00000035444)	chrna11 (ENSCCRG00000056448)	ENSCCRG00000075527	cers2a (ENSCCRG00000024592) #23	ENSCCRG00000060057	celf3a (ENSCCRG00000024042)	rprd2a (ENSCCRG00000024017) #9	ciarta (ENSCCRG00000049041)	mrps21 (ENSCCRG00000067203)	crabp2b (ENSCCRG00000070701)	scamp3 (ENSCCRG00000060760)	ENSCCRG00000062250	ash1l (ENSCCRG00000048996)	lrrc71 (ENSCCRG00000048989)	setdb1a (ENSCCRG00000048984) #22	clk2a (ENSCCRG00000053694)	si:ch211-81a5.8 (ENSCCRG00000057966)	ENSCCRG00000071140	ndufv1 (ENSCCRG00000017955)	ENSCCRG00000008447	ENSCCRG00000048537	ENSCCRG00000076586	ENSCCRG00000055597	ENSCCRG00000048473	ENSCCRG00000034649	clcn1a (ENSCCRG00000043732)	ENSCCRG00000030733	slc2a3a (ENSCCRG00000026954)	ENSCCRG00000026911	cacng6a (ENSCCRG00000007430)
Golden-line barbel	MODERN SPECIES	115	trim46b (ENSSGRG00000054540)	ENSSGRG00000054539	s100a10a (ENSSGRG00000054538)	snx27a (ENSSGRG00000054467)	chrna11 (ENSSGRG00000054457)	rps27.1 (ENSSGRG00000054449)	cers2a (ENSSGRG00000054438) #23	celf3a (ENSSGRG00000054406)	rprd2a (ENSSGRG00000054404) #9	ciarta (ENSSGRG00000054403)	mrps21 (ENSSGRG00000054402)	crabp2b (ENSSGRG00000054401)	scamp3 (ENSSGRG00000054400)	ash1l (ENSSGRG00000054398)	lrrc71 (ENSSGRG00000054397)	setdb1a (ENSSGRG00000054394) #22	clk2a (ENSSGRG00000054252)	si:ch211-81a5.8 (ENSSGRG00000054250)	ENSSGRG00000054249	ndufv1 (ENSSGRG00000054097)	ENSSGRG00000054088	ENSSGRG00000054087	ENSSGRG00000054086	vamp1a (ENSSGRG00000054084)	IFFO1 (ENSSGRG00000054083)	ENSSGRG00000054082	ing4 (ENSSGRG00000054081)	ENSSGRG00000054079	ENSSGRG00000054075	CLCN1 (ENSSGRG00000054074)	slc2a3a (ENSSGRG00000053961)
Zebrafish	MODERN SPECIES	10	trim46b (ENSDARG00000058649)	snx27a (ENSDARG00000033804)	chrna11 (ENSDARG00000037427)	rps27.1 (ENSDARG00000023298)	cers2a (ENSDARG00000013704) #23	ENSDARG00000103224	celf3a (ENSDARG00000034668)	rprd2a (ENSDARG00000058089) #9	ciarta (ENSDARG00000058094)	mrps21 (ENSDARG00000070985)	crabp2b (ENSDARG00000030449)	scamp3 (ENSDARG00000016765)	ENSDARG00000062900	ash1l (ENSDARG00000070981)	lrrc71 (ENSDARG00000036412)	setdb1a (ENSDARG00000041243) #22	clk2a (ENSDARG00000062954)	si:ch211-81a5.8 (ENSDARG00000070972)	ENSDARG00000027192	ndufv1 (ENSDARG00000036438)	ENSDARG00000062962	si:rp71-15k1.1 (ENSDARG00000070964)	si:ch73-15n24.1 (ENSDARG00000079901)	ENSDARG00000070960	ENSDARG00000070959	vamp1a (ENSDARG00000031283)	IFFO1 (ENSDARG00000062976)	ing4 (ENSDARG00000030716)	ENSDARG00000070952	clcn1a (ENSDARG00000062084)	ENSDARG00000070950
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000157471.b #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000157471.b #22
Northern pike	MODERN SPECIES	9	RNF5 (ENSELUG00000005660)	slc44a4 (ENSELUG00000005710)	ehmt2 (ENSELUG00000005771)	zbtb12.2 (ENSELUG00000005796)	nelfe (ENSELUG00000005830)	skic2 (ENSELUG00000000181)	ENSELUG00000005939	tmem268 (ENSELUG00000006018)	ENSELUG00000006050	ENSELUG00000026652	ciarta (ENSELUG00000006069)	rprd2a (ENSELUG00000006084) #9	celf3a (ENSELUG00000006121)	cers2a (ENSELUG00000006172) #23	ENSELUG00000029967	ENSELUG00000006204 #22	clk2a (ENSELUG00000006243)	dnajc8 (ENSELUG00000006366)	hnrnpr (ENSELUG00000006441)	atp5if1 (ENSELUG00000027942)	ADGRB1 (ENSELUG00000006553)	HERPUD2 (ENSELUG00000006593)	SLC4A7 (ENSELUG00000006776)	eomesa (ENSELUG00000006834)	ENSELUG00000006905	ENSELUG00000029852	TGFBR2 (ENSELUG00000006940)	STT3B (ENSELUG00000006981)	OSBPL10 (ENSELUG00000000248)	TMEM42 (ENSELUG00000007069)	zdhhc3b (ENSELUG00000007094)
Salmoninae	ANCESTRAL SPECIES	659									ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c #9	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #23	ENSGT00940000157471.b #22	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f
Salmoninae_a	ANCESTRAL SPECIES	48	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00950000182904.a.a.a.b.c.b	ENSGT00950000182891.b.a.a	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c #9	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #23	ENSGT00940000157471.b #22	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.d	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n	ENSGT00390000012690.b.a
Salmo	ANCESTRAL SPECIES	40	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00950000182904.a.a.a.b.c.b	ENSGT00950000182891.b.a.a	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c #9	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #23	ENSGT00940000157471.b #22	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n	ENSGT00940000155721.b.a.f	ENSGT00950000183130.C
River trout	MODERN SPECIES	27	ENSSTUG00000042240	ENSSTUG00000042278	s100a10a (ENSSTUG00000042289)	ENSSTUG00000042315	snx27a (ENSSTUG00000042380)	chrna11 (ENSSTUG00000037089)	ENSSTUG00000037109	ash1l (ENSSTUG00000037149)	RNF115 (ENSSTUG00000037253)	scamp3 (ENSSTUG00000037278)	crabp2b (ENSSTUG00000037284)	ciarta (ENSSTUG00000037291)	rprd2a (ENSSTUG00000037297) #9	celf3a (ENSSTUG00000037316)	cers2a (ENSSTUG00000037420) #23	setdb1a (ENSSTUG00000037595) #22	clk2a (ENSSTUG00000037867)	dnajc8 (ENSSTUG00000039024)	hnrnpr (ENSSTUG00000039215)	ENSSTUG00000039826	ADGRB1 (ENSSTUG00000039877)	ENSSTUG00000040871	ENSSTUG00000040881	ENSSTUG00000040914	SLC4A7 (ENSSTUG00000041565)	eomesa (ENSSTUG00000047602)	ENSSTUG00000047616	TGFBR2 (ENSSTUG00000047751)	STT3B (ENSSTUG00000047761)	OSBPL10 (ENSSTUG00000047799)	zdhhc3b (ENSSTUG00000047822)
Atlantic salmon	MODERN SPECIES	19	s10a4 (ENSSSAG00000054772)	ENSSSAG00000084587	s100a10a (ENSSSAG00000118630)	snx27a (ENSSSAG00000054800)	chrna11 (ENSSSAG00000096453)	ENSSSAG00000090235	ENSSSAG00000107195	ENSSSAG00000055243	ENSSSAG00000055397	scamp3 (ENSSSAG00000055404)	crabp2b (ENSSSAG00000055413)	ciarta (ENSSSAG00000107330)	rprd2a (ENSSSAG00000055435) #9	celf3a (ENSSSAG00000055446)	cers2a (ENSSSAG00000055868) #23	ENSSSAG00000055973 #22	ENSSSAG00000056033	dnjc8 (ENSSSAG00000059917)	HNRPR (ENSSSAG00000061343)	ENSSSAG00000084525	ENSSSAG00000063533	ENSSSAG00000107886	ENSSSAG00000063607	ENSSSAG00000063614	ENSSSAG00000064060	ENSSSAG00000077826	ENSSSAG00000077832	ENSSSAG00000071403	TGFBR2 (ENSSSAG00000078078)	STT3B (ENSSSAG00000078086)	OSBPL10 (ENSSSAG00000078104)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00970000197205.B	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00950000182891.b.a.a	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c #9	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #23	ENSGT00940000157471.b.e #22	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.d	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n	ENSGT00390000012690.b.a
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000042008	ENSOMYG00000042011	ENSOMYG00000042020	snx27a (ENSOMYG00000042083)	ENSOMYG00000042663	ENSOMYG00000049157	ENSOMYG00000042802	ash1l (ENSOMYG00000042810)	ENSOMYG00000042816	scamp3 (ENSOMYG00000042820)	crabp2b (ENSOMYG00000042831)	ciarta (ENSOMYG00000042838)	rprd2a (ENSOMYG00000042841) #9	celf3a (ENSOMYG00000024971)	cers2a (ENSOMYG00000042862) #23	ENSOMYG00000042924 #22	ENSOMYG00000042945	dnjc8 (ENSOMYG00000043024)	ENSOMYG00000043110	ENSOMYG00000077778	ENSOMYG00000006112	ENSOMYG00000006610	ENSOMYG00000007482	ENSOMYG00000010766	eomesa (ENSOMYG00000024395)	ENSOMYG00000062979	ENSOMYG00000053898	ENSOMYG00000071320	ENSOMYG00000024443	TGFBR2 (ENSOMYG00000024495)	STT3B (ENSOMYG00000024719)
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000158021.c.a	ENSGT00970000197205.B	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c #9	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #23	ENSGT00940000157471.b.e #22	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.d	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n	ENSGT00390000012690.b.a
Coho salmon	MODERN SPECIES	8	ENSOKIG00005020635	s100a10a (ENSOKIG00005020627)	ENSOKIG00005020618	SNX27 (ENSOKIG00005020457)	ENSOKIG00005020354	ENSOKIG00005020327	ENSOKIG00005020310	ash1l (ENSOKIG00005019998)	ENSOKIG00005019989	scamp3 (ENSOKIG00005028025)	crabp2b (ENSOKIG00005028014)	ciarta (ENSOKIG00005027997)	rprd2a (ENSOKIG00005027984) #9	celf3a (ENSOKIG00005027935)	cers2a (ENSOKIG00005027727) #23	ENSOKIG00005027160 #22	clk2a (ENSOKIG00005026569)	dnajc8 (ENSOKIG00005026404)	hnrnpr (ENSOKIG00005026241)	ENSOKIG00005026216	ADGRB1 (ENSOKIG00005026031)	HERPUD2 (ENSOKIG00005026004)	ENSOKIG00005025515	ENSOKIG00005025460	SLC4A7 (ENSOKIG00005024339)	eomesa (ENSOKIG00005024234)	ENSOKIG00005024150	TGFBR2 (ENSOKIG00005024091)	STT3B (ENSOKIG00005023762)	OSBPL10 (ENSOKIG00005023733)	TMEM42 (ENSOKIG00005023721)
Chinook salmon	MODERN SPECIES	5	ENSOTSG00005009878	ENSOTSG00005009879	ENSOTSG00005009880	s100a10a (ENSOTSG00005009881)	ENSOTSG00005009882	snx27a (ENSOTSG00005009884)	chrna11 (ENSOTSG00005010149)	ENSOTSG00005010194	ENSOTSG00005010214	scamp3 (ENSOTSG00005010217)	crabp2b (ENSOTSG00005010221)	ciarta (ENSOTSG00005010224)	rprd2a (ENSOTSG00005010227) #9	celf3a (ENSOTSG00005010230)	cers2a (ENSOTSG00005010239) #23	ENSOTSG00005010266 #22	clk2a (ENSOTSG00005010267)	dnajc8 (ENSOTSG00005011501)	ENSOTSG00005011733	ENSOTSG00005012261	ADGRB1 (ENSOTSG00005012277)	HERPUD2 (ENSOTSG00005012859)	ENSOTSG00005012867	SLC4A7 (ENSOTSG00005013377)	eomesa (ENSOTSG00005015312)	ENSOTSG00005015313	ENSOTSG00005015314	mrpl28 (ENSOTSG00005015315)	ENSOTSG00005015316	ppp1r37 (ENSOTSG00005015319)	bmp16 (ENSOTSG00005015323)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000157471.b.f #22
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000074965	snx27a (ENSOMYG00000005256)	chrna11 (ENSOMYG00000011456)	ENSOMYG00000004215	ENSOMYG00000004382	ENSOMYG00000004535	ash1l (ENSOMYG00000011156)	ENSOMYG00000011264	scamp3 (ENSOMYG00000069466)	ENSOMYG00000060647	mrps21 (ENSOMYG00000023645)	ciarta (ENSOMYG00000023629)	rprd2a (ENSOMYG00000062185) #9	celf3a (ENSOMYG00000024025)	cers2a (ENSOMYG00000071708) #23	ENSOMYG00000062891 #22	ENSOMYG00000004855	dnajc8 (ENSOMYG00000004831)	ENSOMYG00000031715	ENSOMYG00000075777	ENSOMYG00000008228	ENSOMYG00000071431	ENSOMYG00000011522	ENSOMYG00000061912	ENSOMYG00000011488	ENSOMYG00000062475	ENSOMYG00000064068	tgfr2 (ENSOMYG00000004242)	STT3B (ENSOMYG00000003955)	ENSOMYG00000052697	OSBPL10 (ENSOMYG00000003778)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1842																ENSHHUG00000000044 #22	clk2a (ENSHHUG00000000068)	dnajc8 (ENSHHUG00000000336)	hnrnpr (ENSHHUG00000000477)	ENSHHUG00000000827	ADGRB1 (ENSHHUG00000000881)
Huchen	MODERN SPECIES	70	ENSHHUG00000033963	ENSHHUG00000033959	ENSHHUG00000033946	ENSHHUG00000033900	lrrc71 (ENSHHUG00000033889)	ENSHHUG00000033897	ash1l (ENSHHUG00000033874)	ENSHHUG00000033861	scamp3 (ENSHHUG00000033855)	crabp2b (ENSHHUG00000033844)	mrps21 (ENSHHUG00000033835)	ciarta (ENSHHUG00000033820)	rprd2a (ENSHHUG00000033815) #9	celf3a (ENSHHUG00000033743)	cers2a (ENSHHUG00000033733) #23	ENSHHUG00000033730 #22	clk2a (ENSHHUG00000033548)	dnajc8 (ENSHHUG00000033401)	ENSHHUG00000033394	hnrnpr (ENSHHUG00000033360)	ADGRB1 (ENSHHUG00000033118)	HERPUD2 (ENSHHUG00000033105)	SLC4A7 (ENSHHUG00000032793)	eomesa (ENSHHUG00000032772)	ENSHHUG00000032653	TGFBR2 (ENSHHUG00000032630)	STT3B (ENSHHUG00000032620)	OSBPL10 (ENSHHUG00000032615)	TMEM42 (ENSHHUG00000032611)	zdhhc3b (ENSHHUG00000032604)	CLEC3B (ENSHHUG00000032601)
Spotted gar	MODERN SPECIES	663	chrna11 (ENSLOCG00000006790)	snx27b (ENSLOCG00000006767)	smad10a (ENSLOCG00000006749)	snapin (ENSLOCG00000006741)	NUP210L (ENSLOCG00000006713)	RPS27 (ENSLOCG00000006701)	rab13 (ENSLOCG00000006687)	APH1A (ENSLOCG00000006674)	ENSLOCG00000017678	ENSLOCG00000006658	ENSLOCG00000006639	pklr (ENSLOCG00000006611)	clk2a (ENSLOCG00000006600)	ARNT (ENSLOCG00000006585) #20	ENSLOCG00000006575	ENSLOCG00000006560 #22	cers2a (ENSLOCG00000006535) #23	celf3a (ENSLOCG00000006518)	ENSLOCG00000006471 #13	ENSLOCG00000006450 #9	ca14 (ENSLOCG00000006442)	crabp2b (ENSLOCG00000006421)	polr3c (ENSLOCG00000006400)	ENSLOCG00000006385	dap3 (ENSLOCG00000006373)	ITGA10 (ENSLOCG00000006355)	ENSLOCG00000006338	ENSLOCG00000006319	ENTREP3 (ENSLOCG00000006299)	khdc4 (ENSLOCG00000006286)	ENSLOCG00000006268
Reedfish	MODERN SPECIES	10	scamp3 (ENSECRG00000000775)	crabp2b (ENSECRG00000000813)	slc25a44b (ENSECRG00000000835)	ENSECRG00000000856	ENSECRG00000000886	ENSECRG00000000918	ENSECRG00000001124	pklr (ENSECRG00000001821)	ENSECRG00000001870	fdps (ENSECRG00000001906)	ENSECRG00000001946	ash1l (ENSECRG00000001983)	dap3 (ENSECRG00000002149)	ARNT (ENSECRG00000003366) #20	ENSECRG00000007573	setdb1b (ENSECRG00000007597) #22	cers2a (ENSECRG00000007629) #23	celf3a (ENSECRG00000007662)	ENSECRG00000007687 #13	ENSECRG00000007723	ENSECRG00000007751	ENSECRG00000007761	ENSECRG00000007771	ENSECRG00000007880	ENSECRG00000008281	ENSECRG00000008315	smad10a (ENSECRG00000008339)	snapin (ENSECRG00000008354)	chtopb (ENSECRG00000008373)	ilf2 (ENSECRG00000008418)	ENSECRG00000008525