Euteleostomi	ANCESTRAL SPECIES	110											ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT01050000245336	ENSGT00940000154035.b	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT01030000235093	ENSGT00950000183003.a.a.b
Sarcopterygii	ANCESTRAL SPECIES	4	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT01050000245336	ENSGT00940000160889	ENSGT00940000154035.b	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT01030000235093
Tetrapoda	ANCESTRAL SPECIES		ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT01050000245336	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT01030000235093
Amniota	ANCESTRAL SPECIES		ENSGT00390000006347.b	ENSGT01060000249379	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT01050000245336	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093
Mammalia	ANCESTRAL SPECIES		ENSGT00390000006347.b	ENSGT01060000249379	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT01050000245336	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32
Theria	ANCESTRAL SPECIES	1	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093
Eutheria	ANCESTRAL SPECIES	17	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093
Boreoeutheria	ANCESTRAL SPECIES	21	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32
Euarchontoglires	ANCESTRAL SPECIES	21	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32
Primates	ANCESTRAL SPECIES	26	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Haplorrhini	ANCESTRAL SPECIES	28	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Simiiformes	ANCESTRAL SPECIES	22	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Catarrhini	ANCESTRAL SPECIES	21	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Cercopithecidae	ANCESTRAL SPECIES	23	ENSGT00910000146881	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Cercopithecinae	ANCESTRAL SPECIES	20	ENSGT00910000146881	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Cercopithecinae_a	ANCESTRAL SPECIES	19	ENSGT00940000156564 #8	ENSGT00910000146881	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Cercopithecinae_b	ANCESTRAL SPECIES	42	ENSGT00940000156564 #8	ENSGT00910000146881	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Olive baboon	MODERN SPECIES	6	ING1 (ENSPANG00000015880) #7	ANKRD10 (ENSPANG00000035969) #8	ARHGEF7 (ENSPANG00000019938) #9	TEX29 (ENSPANG00000000347) #10	ENSPANG00000046246 #11	SPACA7 (ENSPANG00000014123) #12	TUBGCP3 (ENSPANG00000003631) #13	ATP11A (ENSPANG00000024150) #14	MCF2L (ENSPANG00000010991) #15	F7 (ENSPANG00000000902) #16	F10 (ENSPANG00000033696) #17	PROZ (ENSPANG00000004418) #18	PCID2 (ENSPANG00000015796) #19	ENSPANG00000032920 #20	CUL4A (ENSPANG00000009762) #21	LAMP1 (ENSPANG00000009469) #22	GRTP1 (ENSPANG00000020893) #23	ENSPANG00000040806 #24	ENSPANG00000049451 #25	TMCO3 (ENSPANG00000005743) #26	TFDP1 (ENSPANG00000007195) #27	ATP4B (ENSPANG00000015119) #28	GRK1 (ENSPANG00000009761) #29	C13orf46 (ENSPANG00000030253) #30	RASA3 (ENSPANG00000013357) #31	CDC16 (ENSPANG00000008850) #32	UPF3A (ENSPANG00000004346) #33	CHAMP1 (ENSPANG00000020892) #34
Cercopithecinae_d	ANCESTRAL SPECIES	123	ENSGT00910000146881	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT01000000220446	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Drill	MODERN SPECIES	756				ENSMLEG00000041747	SPACA7 (ENSMLEG00000033786) #12	TUBGCP3 (ENSMLEG00000030956) #13	ATP11A (ENSMLEG00000038214) #14	ENSMLEG00000040151	MCF2L (ENSMLEG00000012302) #15	F7 (ENSMLEG00000027695) #16	F10 (ENSMLEG00000033603) #17	PROZ (ENSMLEG00000035155) #18	ENSMLEG00000042198 #20	PCID2 (ENSMLEG00000041052) #19	CUL4A (ENSMLEG00000032816) #21	LAMP1 (ENSMLEG00000010770) #22	GRTP1 (ENSMLEG00000030651) #23	ADPRHL1 (ENSMLEG00000040316) #25	DCUN1D2 (ENSMLEG00000044116)	TMCO3 (ENSMLEG00000030029) #26	TFDP1 (ENSMLEG00000030254) #27	ATP4B (ENSMLEG00000040112) #28	GRK1 (ENSMLEG00000029033) #29	TMEM255B (ENSMLEG00000042852)	GAS6 (ENSMLEG00000035040)	C13orf46 (ENSMLEG00000031255) #30	RASA3 (ENSMLEG00000032362) #31	CDC16 (ENSMLEG00000041314) #32	UPF3A (ENSMLEG00000014726) #33	CHAMP1 (ENSMLEG00000027271) #34	ENSMLEG00000037569
Sooty mangabey	MODERN SPECIES	640	ARHGEF7 (ENSCATG00000034864) #9	TEX29 (ENSCATG00000036869) #10	SOX1 (ENSCATG00000023653)	SPACA7 (ENSCATG00000045046) #12	ENSCATG00000043468	TUBGCP3 (ENSCATG00000039838) #13	ATP11A (ENSCATG00000029085) #14	MCF2L (ENSCATG00000042785) #15	ENSCATG00000027138	F7 (ENSCATG00000029948) #16	F10 (ENSCATG00000042422) #17	PROZ (ENSCATG00000034112) #18	PCID2 (ENSCATG00000034552) #19	ENSCATG00000041549 #20	CUL4A (ENSCATG00000030912) #21	LAMP1 (ENSCATG00000040440) #22	GRTP1 (ENSCATG00000018678) #23	ADPRHL1 (ENSCATG00000041559) #25	DCUN1D2 (ENSCATG00000030801)	TMCO3 (ENSCATG00000002158) #26	TFDP1 (ENSCATG00000042331) #27	ATP4B (ENSCATG00000031476) #28	GRK1 (ENSCATG00000042879) #29	TMEM255B (ENSCATG00000011419)	GAS6 (ENSCATG00000034441)	C13orf46 (ENSCATG00000039261) #30	RASA3 (ENSCATG00000033809) #31	CDC16 (ENSCATG00000044064) #32	UPF3A (ENSCATG00000029733) #33	CHAMP1 (ENSCATG00000035295) #34
Macaca	ANCESTRAL SPECIES	19	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Pig-tailed macaque	MODERN SPECIES	118	ING1 (ENSMNEG00000039980) #7	ANKRD10 (ENSMNEG00000041645) #8	ARHGEF7 (ENSMNEG00000038979) #9	TEX29 (ENSMNEG00000027188) #10	ENSMNEG00000034443	SPACA7 (ENSMNEG00000040845) #12	TUBGCP3 (ENSMNEG00000041136) #13	ATP11A (ENSMNEG00000045207) #14	MCF2L (ENSMNEG00000035811) #15	F7 (ENSMNEG00000011584) #16	F10 (ENSMNEG00000037494) #17	PROZ (ENSMNEG00000040528) #18	ENSMNEG00000033370 #20	PCID2 (ENSMNEG00000033261) #19	CUL4A (ENSMNEG00000043827) #21	LAMP1 (ENSMNEG00000041466) #22	GRTP1 (ENSMNEG00000036000) #23	ENSMNEG00000042178 #23	DCUN1D2 (ENSMNEG00000044056)	TMCO3 (ENSMNEG00000041813) #26	TFDP1 (ENSMNEG00000045023) #27	ATP4B (ENSMNEG00000044326) #28	GRK1 (ENSMNEG00000023369) #29	TMEM255B (ENSMNEG00000043509)	GAS6 (ENSMNEG00000036793)	C13orf46 (ENSMNEG00000041113) #30	RASA3 (ENSMNEG00000041628) #31	CDC16 (ENSMNEG00000023746) #32	UPF3A (ENSMNEG00000036402) #33	CHAMP1 (ENSMNEG00000033831) #34
Macaca_a	ANCESTRAL SPECIES	19	ENSGT01100000263493.a.b.a.b.a.a.b.a.b.b.b.a.b.b.a.a.b.b.b	ENSGT01100000263493.a.a.a.b.b.a.b.a.a.b	ENSGT01100000263493.a.b.b.b.b.a.b.a.a.a	ENSGT00910000146881	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT01100000263493.a.b.b.a.b.a.b.b	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Crab-eating macaque	MODERN SPECIES	8	ENSMFAG00000058567	ENSMFAG00000063297	SPACA7 (ENSMFAG00000023319) #12	TUBGCP3 (ENSMFAG00000033216) #13	ENSMFAG00000063018	ENSMFAG00000051148	ATP11A (ENSMFAG00000032147) #14	ENSMFAG00000063346	MCF2L (ENSMFAG00000031140) #15	F7 (ENSMFAG00000033443) #16	F10 (ENSMFAG00000043700) #17	PROZ (ENSMFAG00000042310) #18	PCID2 (ENSMFAG00000003946) #19	ENSMFAG00000030967 #20	CUL4A (ENSMFAG00000043855) #21	LAMP1 (ENSMFAG00000031309) #22	GRTP1 (ENSMFAG00000039147) #23	ADPRHL1 (ENSMFAG00000034058) #25	DCUN1D2 (ENSMFAG00000016446)	TMCO3 (ENSMFAG00000040684) #26	TFDP1 (ENSMFAG00000035619) #27	ATP4B (ENSMFAG00000036883) #28	GRK1 (ENSMFAG00000039991) #29	TMEM255B (ENSMFAG00000002078)	GAS6 (ENSMFAG00000043611)	C13orf46 (ENSMFAG00000041359) #30	RASA3 (ENSMFAG00000000503) #31	CDC16 (ENSMFAG00000042134) #32	UPF3A (ENSMFAG00000045016) #33	ENSMFAG00000064092	CHAMP1 (ENSMFAG00000045724) #34
Rhesus	MODERN SPECIES	8	ENSMMUG00000054221	ENSMMUG00000059002	ENSMMUG00000056253	ENSMMUG00000056576 #11	SPACA7 (ENSMMUG00000013615) #12	TUBGCP3 (ENSMMUG00000013617) #13	ATP11A (ENSMMUG00000013625) #14	ENSMMUG00000050594	MCF2L (ENSMMUG00000048566) #15	F7 (ENSMMUG00000001036) #16	F10 (ENSMMUG00000001038) #17	PROZ (ENSMMUG00000001039) #18	PCID2 (ENSMMUG00000001041) #19	ENSMMUG00000064790 #20	CUL4A (ENSMMUG00000019297) #21	LAMP1 (ENSMMUG00000009790) #22	GRTP1 (ENSMMUG00000009791) #23	DCUN1D2 (ENSMMUG00000016740) #25	TMCO3 (ENSMMUG00000040562) #26	TFDP1 (ENSMMUG00000007423) #27	ATP4B (ENSMMUG00000061026) #28	GRK1 (ENSMMUG00000007427) #29	TMEM255B (ENSMMUG00000050639)	GAS6 (ENSMMUG00000007428)	C17H13orf46 (ENSMMUG00000054800) #30	RASA3 (ENSMMUG00000007434) #31	CDC16 (ENSMMUG00000007439) #32	UPF3A (ENSMMUG00000007449) #33	CHAMP1 (ENSMMUG00000023599) #34	ENSMMUG00000061524
Vervet Monkey	MODERN SPECIES	22	ARHGEF7 (ENSCSAG00000017462) #9	TEX29 (ENSCSAG00000017461) #10	SOX1 (ENSCSAG00000017460)	ENSCSAG00000017459 #11	SPACA7 (ENSCSAG00000017458) #12	TUBGCP3 (ENSCSAG00000017457) #13	ENSCSAG00000017455	ATP11A (ENSCSAG00000017453) #14	MCF2L (ENSCSAG00000017451) #15	ENSCSAG00000017448	F7 (ENSCSAG00000017446) #16	F10 (ENSCSAG00000017445) #17	PROZ (ENSCSAG00000017442) #18	PCID2 (ENSCSAG00000017441) #19	CUL4A (ENSCSAG00000017438) #21	LAMP1 (ENSCSAG00000017436) #22	GRTP1 (ENSCSAG00000017435) #23	ADPRHL1 (ENSCSAG00000017434) #25	DCUN1D2 (ENSCSAG00000017433)	TMCO3 (ENSCSAG00000017431) #26	TFDP1 (ENSCSAG00000017427) #27	ATP4B (ENSCSAG00000017412) #28	GRK1 (ENSCSAG00000017403) #29	TMEM255B (ENSCSAG00000017401)	GAS6 (ENSCSAG00000017396)	RASA3 (ENSCSAG00000017394) #31	CDC16 (ENSCSAG00000017391) #32	UPF3A (ENSCSAG00000017388) #33	CHAMP1 (ENSCSAG00000000209) #34
Rhinopithecus	ANCESTRAL SPECIES	117	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00910000146881	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00910000147261 #20	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Black snub-nosed monkey	MODERN SPECIES	2234							ENSRBIG00000043763	TUBGCP3 (ENSRBIG00000027625) #13	ATP11A (ENSRBIG00000037242) #14	MCF2L (ENSRBIG00000007262) #15	F7 (ENSRBIG00000031149) #16	F10 (ENSRBIG00000030832) #17	PROZ (ENSRBIG00000033790) #18	PCID2 (ENSRBIG00000038392) #19	CUL4A (ENSRBIG00000040653) #21	LAMP1 (ENSRBIG00000042842) #22	GRTP1 (ENSRBIG00000044502) #23	ENSRBIG00000036828 #23	DCUN1D2 (ENSRBIG00000025460)	TMCO3 (ENSRBIG00000033506) #26	TFDP1 (ENSRBIG00000030425) #27	ATP4B (ENSRBIG00000032663) #28	GRK1 (ENSRBIG00000034883) #29	TMEM255B (ENSRBIG00000027974)	GAS6 (ENSRBIG00000025018)	C13orf46 (ENSRBIG00000036246) #30	RASA3 (ENSRBIG00000043480) #31
Golden snub-nosed monkey	MODERN SPECIES	859						SPACA7 (ENSRROG00000034948) #12	TUBGCP3 (ENSRROG00000042859) #13	ATP11A (ENSRROG00000035552) #14	MCF2L (ENSRROG00000030289) #15	F7 (ENSRROG00000027792) #16	F10 (ENSRROG00000024682) #17	PROZ (ENSRROG00000039937) #18	ENSRROG00000029319 #20	PCID2 (ENSRROG00000040364) #19	CUL4A (ENSRROG00000040311) #21	LAMP1 (ENSRROG00000040348) #22
Hominoidea	ANCESTRAL SPECIES	21	ENSGT00910000146881	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00910000147261 #20	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Hominidae	ANCESTRAL SPECIES	23	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	23	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101.t #19	ENSGT00390000001101.s.a #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b.e #33	ENSGT00730000111351 #34
Gorilla	MODERN SPECIES	4	CARS2 (ENSGGOG00000011255)	ENSGGOG00000013010 #7	ANKRD10 (ENSGGOG00000005180) #8	ARHGEF7 (ENSGGOG00000007561) #9	TEX29 (ENSGGOG00000009741) #10	SPACA7 (ENSGGOG00000026063) #12	TUBGCP3 (ENSGGOG00000011392) #13	ATP11A (ENSGGOG00000014012) #14	MCF2L (ENSGGOG00000014036) #15	F7 (ENSGGOG00000014062) #16	F10 (ENSGGOG00000014085) #17	PROZ (ENSGGOG00000000407) #18	ENSGGOG00000036524 #19	ENSGGOG00000000409 #19	CUL4A (ENSGGOG00000000415) #21	LAMP1 (ENSGGOG00000003044) #22	GRTP1 (ENSGGOG00000003049) #23	ADPRHL1 (ENSGGOG00000027236) #25	DCUN1D2 (ENSGGOG00000027172)	TMCO3 (ENSGGOG00000010596) #26	TFDP1 (ENSGGOG00000004908) #27	ATP4B (ENSGGOG00000012116) #28	ENSGGOG00000017187 #29	GAS6 (ENSGGOG00000017166)	TMEM255B (ENSGGOG00000017167)	ENSGGOG00000042492 #30	RASA3 (ENSGGOG00000008967) #31	CFAP97D2 (ENSGGOG00000041604)	CDC16 (ENSGGOG00000015411) #32	UPF3A (ENSGGOG00000015428) #33	CHAMP1 (ENSGGOG00000037243) #34
Homo/Pan group	ANCESTRAL SPECIES	22	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101.s.a #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b.e #33	ENSGT00730000111351 #34
Pan	ANCESTRAL SPECIES	22	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874.i #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101.s.a #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.f #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00960000190786	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182926.b.d.c.b.a.a	ENSGT00950000182950.B #32
Chimpanzee	MODERN SPECIES	4	ANKRD10 (ENSPTRG00000006038) #8	ARHGEF7 (ENSPTRG00000006039) #9	TEX29 (ENSPTRG00000006041) #10	SOX1 (ENSPTRG00000040942)	SPACA7 (ENSPTRG00000006045) #12	TUBGCP3 (ENSPTRG00000006046) #13	ATP11A (ENSPTRG00000006047) #14	ENSPTRG00000051950	ENSPTRG00000006048 #15	ENSPTRG00000045708	F7 (ENSPTRG00000006049) #16	F10 (ENSPTRG00000006050) #17	PROZ (ENSPTRG00000006051) #18	PCID2 (ENSPTRG00000006053) #19	CUL4A (ENSPTRG00000006054) #21	LAMP1 (ENSPTRG00000006055) #22	GRTP1 (ENSPTRG00000006056) #23	ADPRHL1 (ENSPTRG00000045938) #25	DCUN1D2 (ENSPTRG00000006059)	TMCO3 (ENSPTRG00000006060) #26	TFDP1 (ENSPTRG00000048704) #27	ATP4B (ENSPTRG00000006063) #28	GRK1 (ENSPTRG00000006064) #29	TMEM255B (ENSPTRG00000045155)	ENSPTRG00000043183	C13H13orf46 (ENSPTRG00000047848) #30	RASA3 (ENSPTRG00000006069) #31	CFAP97D2 (ENSPTRG00000050483)	ENSPTRG00000045939	CDC16 (ENSPTRG00000006072) #32	UPF3A (ENSPTRG00000006073) #33
Bonobo	MODERN SPECIES	4	ENSPPAG00000035356	CARS2 (ENSPPAG00000037983)	ING1 (ENSPPAG00000029178) #7	ANKRD10 (ENSPPAG00000038873) #8	ARHGEF7 (ENSPPAG00000024659) #9	TEX29 (ENSPPAG00000035368) #10	ENSPPAG00000006379 #12	TUBGCP3 (ENSPPAG00000010792) #13	ATP11A (ENSPPAG00000031932) #14	MCF2L (ENSPPAG00000037184) #15	F7 (ENSPPAG00000039476) #16	F10 (ENSPPAG00000035028) #17	PROZ (ENSPPAG00000034449) #18	PCID2 (ENSPPAG00000039673) #19	CUL4A (ENSPPAG00000034185) #21	LAMP1 (ENSPPAG00000034963) #22	ENSPPAG00000037417 #23	ADPRHL1 (ENSPPAG00000003407) #25	DCUN1D2 (ENSPPAG00000031617)	TMCO3 (ENSPPAG00000035939) #26	TFDP1 (ENSPPAG00000031115) #27	ATP4B (ENSPPAG00000010621) #28	GRK1 (ENSPPAG00000011431) #29	ENSPPAG00000012872	GAS6 (ENSPPAG00000030726)	ENSPPAG00000032641	C13orf46 (ENSPPAG00000031241) #30	RASA3 (ENSPPAG00000032851) #31	CFAP97D2 (ENSPPAG00000025104)	ENSPPAG00000027566	CDC16 (ENSPPAG00000029807) #32
Human	MODERN SPECIES	4	CARS2 (ENSG00000134905)	ING1 (ENSG00000153487) #7	ANKRD10 (ENSG00000088448) #8	ARHGEF7 (ENSG00000102606) #9	TEX29 (ENSG00000153495) #10	SOX1 (ENSG00000182968)	SPACA7 (ENSG00000153498) #12	TUBGCP3 (ENSG00000126216) #13	ATP11A (ENSG00000068650) #14	MCF2L (ENSG00000126217) #15	F7 (ENSG00000057593) #16	F10 (ENSG00000126218) #17	PROZ (ENSG00000126231) #18	PCID2 (ENSG00000126226) #19	CUL4A (ENSG00000139842) #21	LAMP1 (ENSG00000185896) #22	GRTP1 (ENSG00000139835) #23	ADPRHL1 (ENSG00000153531) #25	DCUN1D2 (ENSG00000150401)	TMCO3 (ENSG00000150403) #26	TFDP1 (ENSG00000198176) #27	ATP4B (ENSG00000186009) #28	GRK1 (ENSG00000185974) #29	TMEM255B (ENSG00000184497)	GAS6 (ENSG00000183087)	C13orf46 (ENSG00000283199) #30	RASA3 (ENSG00000185989) #31	CFAP97D2 (ENSG00000283361)	CDC16 (ENSG00000130177) #32	UPF3A (ENSG00000169062) #33	CHAMP1 (ENSG00000198824) #34
Orangutan	MODERN SPECIES	4	CARS2 (ENSPPYG00000005504)	ING1 (ENSPPYG00000031876) #7	ANKRD10 (ENSPPYG00000005507) #8	ARHGEF7 (ENSPPYG00000005508) #9	ENSPPYG00000005509 #10	SOX1 (ENSPPYG00000005512)	ENSPPYG00000005513 #12	TUBGCP3 (ENSPPYG00000005514) #13	ATP11A (ENSPPYG00000005516) #14	MCF2L (ENSPPYG00000005517) #15	F7 (ENSPPYG00000005519) #16	F10 (ENSPPYG00000005520) #17	PROZ (ENSPPYG00000005521) #18	PCID2 (ENSPPYG00000005522) #19	CUL4A (ENSPPYG00000005523) #21	LAMP1 (ENSPPYG00000005524) #22	GRTP1 (ENSPPYG00000005525) #23	ENSPPYG00000005526 #25	DCUN1D2 (ENSPPYG00000040883)	TMCO3 (ENSPPYG00000005528) #26	TFDP1 (ENSPPYG00000025889) #27	ATP4B (ENSPPYG00000005529) #28	GRK1 (ENSPPYG00000005530) #29	TMEM255B (ENSPPYG00000033687)	GAS6 (ENSPPYG00000005531)	ENSPPYG00000033941 #30	RASA3 (ENSPPYG00000005534) #31	ENSPPYG00000035907	CDC16 (ENSPPYG00000005535) #32	UPF3A (ENSPPYG00000005536) #33
Gibbon	MODERN SPECIES	20	ARHGEF7 (ENSNLEG00000007989) #9	TEX29 (ENSNLEG00000008012) #10	ENSNLEG00000000409	SPACA7 (ENSNLEG00000000412) #12	ENSNLEG00000028455	TUBGCP3 (ENSNLEG00000000422) #13	ATP11A (ENSNLEG00000000431) #14	ENSNLEG00000033777	MCF2L (ENSNLEG00000000451) #15	F7 (ENSNLEG00000000481) #16	F10 (ENSNLEG00000000493) #17	PROZ (ENSNLEG00000000525) #18	PCID2 (ENSNLEG00000000552) #19	ENSNLEG00000031367 #20	CUL4A (ENSNLEG00000000649) #21	LAMP1 (ENSNLEG00000000749) #22	GRTP1 (ENSNLEG00000000754) #23	ADPRHL1 (ENSNLEG00000000795) #25	DCUN1D2 (ENSNLEG00000036326)	TMCO3 (ENSNLEG00000000823) #26	TFDP1 (ENSNLEG00000000849) #27	ATP4B (ENSNLEG00000000867) #28	ENSNLEG00000035412	GAS6 (ENSNLEG00000010348)	RASA3 (ENSNLEG00000007543) #31	CFAP97D2 (ENSNLEG00000030962)	CDC16 (ENSNLEG00000007554) #32	UPF3A (ENSNLEG00000007563) #33	CHAMP1 (ENSNLEG00000035058) #34	ENSNLEG00000027187	ENSNLEG00000034623
Platyrrhini	ANCESTRAL SPECIES	23	ENSGT00940000155401.f #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.e ##27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Cebidae	ANCESTRAL SPECIES	26	ENSGT00390000006347.b	ENSGT00940000155401.f #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.e ##27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Marmoset	MODERN SPECIES		CARS2 (ENSCJAG00000014187)	ING1 (ENSCJAG00000014168) #7	ANKRD10 (ENSCJAG00000014141) #8	ARHGEF7 (ENSCJAG00000014093) #9	TEX29 (ENSCJAG00000014083) #10	ENSCJAG00000051578 #11	SPACA7 (ENSCJAG00000071735) #12	TUBGCP3 (ENSCJAG00000006651) #13	ATP11A (ENSCJAG00000006683) #14	MCF2L (ENSCJAG00000059789) #15	F7 (ENSCJAG00000006721) #16	F10 (ENSCJAG00000006736) #17	PROZ (ENSCJAG00000006758) #18	PCID2 (ENSCJAG00000006773) #19	CUL4A (ENSCJAG00000006831) #21	LAMP1 (ENSCJAG00000006900) #22	GRTP1 (ENSCJAG00000006915) #23	ADPRHL1 (ENSCJAG00000075654) #25	DCUN1D2 (ENSCJAG00000038309)	TMCO3 (ENSCJAG00000006931) #26	ENSCJAG00000057712	ENSCJAG00000077811 ##27	ATP4B (ENSCJAG00000006956) #28	GRK1 (ENSCJAG00000006957) #29	TMEM255B (ENSCJAG00000044914)	GAS6 (ENSCJAG00000018947)	C13orf46 (ENSCJAG00000033547) #30	RASA3 (ENSCJAG00000018972) #31	ENSCJAG00000079000	ENSCJAG00000042504	CDC16 (ENSCJAG00000019010) #32
Cebidae_a	ANCESTRAL SPECIES	60	ENSGT00390000006347.b	ENSGT00940000155401.f #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.e ##27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Bolivian squirrel monkey	MODERN SPECIES	70	NAXD (ENSSBOG00000021199)	CARS2 (ENSSBOG00000018552)	ING1 (ENSSBOG00000018909) #7	ANKRD10 (ENSSBOG00000024976) #8	ARHGEF7 (ENSSBOG00000014203) #9	TEX29 (ENSSBOG00000029787) #10	SPACA7 (ENSSBOG00000032331) #12	TUBGCP3 (ENSSBOG00000031378) #13	ATP11A (ENSSBOG00000024362) #14	MCF2L (ENSSBOG00000026790) #15	F7 (ENSSBOG00000021308) #16	F10 (ENSSBOG00000029681) #17	PROZ (ENSSBOG00000001358) #18	PCID2 (ENSSBOG00000018904) #19	CUL4A (ENSSBOG00000007355) #21	LAMP1 (ENSSBOG00000019903) #22	GRTP1 (ENSSBOG00000035632) #23	ENSSBOG00000021280 #25	DCUN1D2 (ENSSBOG00000028669)	TMCO3 (ENSSBOG00000027320) #26	ENSSBOG00000030012 ##27	ATP4B (ENSSBOG00000024780) #28	GRK1 (ENSSBOG00000019722) #29	TMEM255B (ENSSBOG00000021458)	GAS6 (ENSSBOG00000010249)	C13orf46 (ENSSBOG00000029410) #30	RASA3 (ENSSBOG00000020234) #31	CFAP97D2 (ENSSBOG00000027415)	CDC16 (ENSSBOG00000031301) #32	UPF3A (ENSSBOG00000029989) #33	CHAMP1 (ENSSBOG00000034442) #34
Capuchin	MODERN SPECIES	764																LAMP1 (ENSCCAG00000022328) #22	GRTP1 (ENSCCAG00000018096) #23	ENSCCAG00000030659 #25	DCUN1D2 (ENSCCAG00000024267)	TMCO3 (ENSCCAG00000014045) #26	ENSCCAG00000025955 ##27	ATP4B (ENSCCAG00000033479) #28	GRK1 (ENSCCAG00000024368) #29	ENSCCAG00000022505
Mas night monkey	MODERN SPECIES	1238										MCF2L (ENSANAG00000029605) #15	F7 (ENSANAG00000023242) #16	F10 (ENSANAG00000034266) #17	PROZ (ENSANAG00000026450) #18	PCID2 (ENSANAG00000023747) #19	ENSANAG00000027277 #21	LAMP1 (ENSANAG00000020148) #22	GRTP1 (ENSANAG00000029704) #23	ENSANAG00000024329 #25	DCUN1D2 (ENSANAG00000026398)	TMCO3 (ENSANAG00000005822) #26	ENSANAG00000019998 ##27	ATP4B (ENSANAG00000024249) #28	GRK1 (ENSANAG00000004647) #29	ENSANAG00000026611	GAS6 (ENSANAG00000016500)	ENSANAG00000024410 #30	RASA3 (ENSANAG00000024264) #31	CFAP97D2 (ENSANAG00000023897)
Tarsier	MODERN SPECIES	3614																LAMP1 (ENSTSYG00000009847) #22	GRTP1 (ENSTSYG00000025442) #23
Strepsirrhini	ANCESTRAL SPECIES	27	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B.f #32	ENSGT00390000017146.b #33
Lemuriformes	ANCESTRAL SPECIES	90											ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B.f #32	ENSGT00390000017146.b #33
Mouse lemur	MODERN SPECIES	4	H3-4 (ENSMICG00000045112)	H2AC25 (ENSMICG00000044054)	H2BC26 (ENSMICG00000041996)	ENSMICG00000048090	ENSMICG00000038421	ENSMICG00000046509	ENSMICG00000045969	ENSMICG00000026371	ENSMICG00000026956	ENSMICG00000047302	MCF2L (ENSMICG00000033069) #15	F7 (ENSMICG00000032148) #16	F10 (ENSMICG00000028391) #17	PCID2 (ENSMICG00000028127) #19	ENSMICG00000012670 #21	LAMP1 (ENSMICG00000012709) #22	GRTP1 (ENSMICG00000012739) #23	ENSMICG00000045617 #23	DCUN1D2 (ENSMICG00000046494)	TMCO3 (ENSMICG00000013740) #26	TFDP1 (ENSMICG00000036011) #27	ATP4B (ENSMICG00000046425) #28	GRK1 (ENSMICG00000010545) #29	TMEM255B (ENSMICG00000044484)	GAS6 (ENSMICG00000046084)	RASA3 (ENSMICG00000006158) #31	CFAP97D2 (ENSMICG00000044834)	CDC16 (ENSMICG00000012596) #32	ENSMICG00000042420 #33
Lemuriformes_a	ANCESTRAL SPECIES	189											ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B.f #32	ENSGT01030000235093
Coquerels sifaka	MODERN SPECIES	912											MCF2L (ENSPCOG00000026653) #15	F7 (ENSPCOG00000013316) #16	ENSPCOG00000026790 #17	PCID2 (ENSPCOG00000013649) #19	CUL4A (ENSPCOG00000023223) #21	LAMP1 (ENSPCOG00000022485) #22	GRTP1 (ENSPCOG00000021296) #23	ENSPCOG00000018688 #25	DCUN1D2 (ENSPCOG00000019632)	TMCO3 (ENSPCOG00000009134) #26	TFDP1 (ENSPCOG00000020793) #27	ATP4B (ENSPCOG00000020921) #28	GRK1 (ENSPCOG00000027424) #29
Greater bamboo lemur	MODERN SPECIES	463											MCF2L (ENSPSMG00000016987) #15	F7 (ENSPSMG00000016963) #16	F10 (ENSPSMG00000016947) #17	PCID2 (ENSPSMG00000016895) #19	CUL4A (ENSPSMG00000016788) #21	LAMP1 (ENSPSMG00000016747) #22	GRTP1 (ENSPSMG00000016744) #23	ENSPSMG00000016740 #25	DCUN1D2 (ENSPSMG00000016733)	TMCO3 (ENSPSMG00000016721) #26	TFDP1 (ENSPSMG00000016704) #27	ATP4B (ENSPSMG00000016661) #28	GRK1 (ENSPSMG00000016639) #29	TMEM255B (ENSPSMG00000016630)	GAS6 (ENSPSMG00000016608)	C13orf46 (ENSPSMG00000016589) #30	RASA3 (ENSPSMG00000016562) #31	CFAP97D2 (ENSPSMG00000016480)
Bushbaby	MODERN SPECIES	276	NAXD (ENSOGAG00000010184)	CARS2 (ENSOGAG00000010188)	ING1 (ENSOGAG00000002849) #7	ANKRD10 (ENSOGAG00000004412) #8	ARHGEF7 (ENSOGAG00000002032) #9	TEX29 (ENSOGAG00000030706) #10	ENSOGAG00000034024	SOX1 (ENSOGAG00000034416)	TUBGCP3 (ENSOGAG00000013607) #13	ENSOGAG00000025287 #14	MCF2L (ENSOGAG00000017180) #15	F7 (ENSOGAG00000026266) #16	F10 (ENSOGAG00000017182) #17	PCID2 (ENSOGAG00000017184) #19	CUL4A (ENSOGAG00000017186) #21	LAMP1 (ENSOGAG00000009899) #22	GRTP1 (ENSOGAG00000009900) #23	ENSOGAG00000031596 #25	DCUN1D2 (ENSOGAG00000007173)	TMCO3 (ENSOGAG00000007177) #26	TFDP1 (ENSOGAG00000003532) #27	ATP4B (ENSOGAG00000003536) #28	GRK1 (ENSOGAG00000003539) #29	TMEM255B (ENSOGAG00000006445)	GAS6 (ENSOGAG00000026943)	C13orf46 (ENSOGAG00000031527) #30	RASA3 (ENSOGAG00000010903) #31	CDC16 (ENSOGAG00000010733) #32	UPF3A (ENSOGAG00000004788) #33
Euarchontoglires_A	ANCESTRAL SPECIES	21	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Tree shrew	MODERN SPECIES	4624																ENSTBEG00000001961 #22
Glires	ANCESTRAL SPECIES	22	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Rodentia	ANCESTRAL SPECIES	22	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Rodentia_B	ANCESTRAL SPECIES	25	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Kangaroo rat	MODERN SPECIES	383	Naxd (ENSDORG00000009517)	Cars2 (ENSDORG00000009518)	ENSDORG00000026072 #7	ENSDORG00000000608	ENSDORG00000001451 #8	Arhgef7 (ENSDORG00000004515) #9	Tubgcp3 (ENSDORG00000012578) #13	ENSDORG00000026370 #14	ENSDORG00000011541 #14	Mcf2l (ENSDORG00000009911) #15	F7 (ENSDORG00000009914) #16	F10 (ENSDORG00000009916) #17	Proz (ENSDORG00000009918) #18	Pcid2 (ENSDORG00000009919) #19	Cul4a (ENSDORG00000009920) #21	Lamp1 (ENSDORG00000014590) #22	Grtp1 (ENSDORG00000025526) #23	ENSDORG00000012068	ENSDORG00000012066 #25	Tmco3 (ENSDORG00000012070) #26	Tfdp1 (ENSDORG00000001657) #27	Atp4b (ENSDORG00000001659) #28	Grk1 (ENSDORG00000011055) #29	Tmem255b (ENSDORG00000004434)	Gas6 (ENSDORG00000012090)	ENSDORG00000026305 #30	Rasa3 (ENSDORG00000004107) #31	ENSDORG00000023484	Cdc16 (ENSDORG00000011672) #32	ENSDORG00000011402	Champ1 (ENSDORG00000024164) #34
Myomorpha	ANCESTRAL SPECIES	32	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Muroidea	ANCESTRAL SPECIES	25	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Muroidea_A	ANCESTRAL SPECIES	31	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Murinae	ANCESTRAL SPECIES	35	ENSGT00940000155401.j #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Mus	ANCESTRAL SPECIES	6	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00860000135683	ENSGT00940000162479	ENSGT00900000143323.A	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.i #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00860000135683	ENSGT00940000162479	ENSGT00900000143323.A	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.i #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00860000135683	ENSGT00940000162479	ENSGT00900000143323.A	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.i #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00860000135683	ENSGT00940000162479	ENSGT00900000143323.A	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652.i #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Steppe mouse	MODERN SPECIES	3344	Arhgef7 (ENSMSIG00000009198) #9	Tex29 (ENSMSIG00000009088) #10	ENSMSIG00000009060	ENSMSIG00000009016 #11	ENSMSIG00000009009	Spaca7 (ENSMSIG00000008969) #12	ENSMSIG00000007709 #13	ENSMSIG00000007686	Atp11a (ENSMSIG00000007316) #14	Mcf2l (ENSMSIG00000006777) #15	F7 (ENSMSIG00000006688) #16	F10 (ENSMSIG00000006622) #17	ENSMSIG00000006611 #18	Pcid2 (ENSMSIG00000006579) #19	Cul4a (ENSMSIG00000006476) #21	Lamp1 (ENSMSIG00000006411) #22	Grtp1 (ENSMSIG00000006285) #23	Adprhl1 (ENSMSIG00000006243) #25	ENSMSIG00000006071	Tmco3 (ENSMSIG00000006023) #26	ENSMSIG00000005980 #27	Atp4b (ENSMSIG00000005950) #28	Grk1 (ENSMSIG00000005917) #29	Tmem255b (ENSMSIG00000005845)	Gas6 (ENSMSIG00000005788)	1700029H14Rik (ENSMSIG00000005649) #30	Rasa3 (ENSMSIG00000005579) #31	Cfap97d2 (ENSMSIG00000005516)	Cdc16 (ENSMSIG00000005440) #32	Upf3a (ENSMSIG00000005401) #33
spretus	MODERN SPECIES	17	Spaca7b (MGP_SPRETEiJ_G0031929) #12	Arhgef7 (MGP_SPRETEiJ_G0031930) #9	Tex29 (MGP_SPRETEiJ_G0031931) #10	MGP_SPRETEiJ_G0031932	Sox1 (MGP_SPRETEiJ_G0031933)	MGP_SPRETEiJ_G0031934	Spaca7 (MGP_SPRETEiJ_G0031935) #12	Tubgcp3 (MGP_SPRETEiJ_G0031936) #13	Atp11a (MGP_SPRETEiJ_G0031937) #14	Mcf2l (MGP_SPRETEiJ_G0031938) #15	F7 (MGP_SPRETEiJ_G0031939) #16	F10 (MGP_SPRETEiJ_G0031940) #17	Proz (MGP_SPRETEiJ_G0031941) #18	Pcid2 (MGP_SPRETEiJ_G0031942) #19	Cul4a (MGP_SPRETEiJ_G0031943) #21	Lamp1 (MGP_SPRETEiJ_G0031944) #22	Grtp1 (MGP_SPRETEiJ_G0031945) #23	Adprhl1 (MGP_SPRETEiJ_G0031946) #25	Dcun1d2 (MGP_SPRETEiJ_G0031947)	Tmco3 (MGP_SPRETEiJ_G0031948) #26	Tfdp1 (MGP_SPRETEiJ_G0031949) #27	Atp4b (MGP_SPRETEiJ_G0031950) #28	Grk1 (MGP_SPRETEiJ_G0031951) #29	Tmem255b (MGP_SPRETEiJ_G0031952)	Gas6 (MGP_SPRETEiJ_G0031953)	1700029H14Rik (MGP_SPRETEiJ_G0031954) #30	Rasa3 (MGP_SPRETEiJ_G0031955) #31	Cfap97d2 (MGP_SPRETEiJ_G0031956)	Cdc16 (MGP_SPRETEiJ_G0031957) #32	Upf3a (MGP_SPRETEiJ_G0031958) #33	Champ1 (MGP_SPRETEiJ_G0031959) #34
Mouse	MODERN SPECIES	17	Ing1 (ENSMUSG00000045969) #7	Ankrd10 (ENSMUSG00000031508) #8	Spaca7b (ENSMUSG00000031509) #12	Arhgef7 (ENSMUSG00000031511) #9	Tex29 (ENSMUSG00000031512) #10	Sox1 (ENSMUSG00000096014)	Spaca7 (ENSMUSG00000010435) #12	Tubgcp3 (ENSMUSG00000000759) #13	Atp11a (ENSMUSG00000031441) #14	Mcf2l (ENSMUSG00000031442) #15	F7 (ENSMUSG00000031443) #16	F10 (ENSMUSG00000031444) #17	Proz (ENSMUSG00000031445) #18	Pcid2 (ENSMUSG00000038542) #19	Cul4a (ENSMUSG00000031446) #21	Lamp1 (ENSMUSG00000031447) #22	Grtp1 (ENSMUSG00000038515) #23	Adprhl1 (ENSMUSG00000031448) #25	Dcun1d2 (ENSMUSG00000038506)	Tmco3 (ENSMUSG00000038497) #26	Tfdp1 (ENSMUSG00000038482) #27	Atp4b (ENSMUSG00000031449) #28	Grk1 (ENSMUSG00000031450) #29	Tmem255b (ENSMUSG00000038457)	Gas6 (ENSMUSG00000031451)	1700029H14Rik (ENSMUSG00000031452) #30	Rasa3 (ENSMUSG00000031453) #31	Cfap97d2 (ENSMUSG00000090336)	Cdc16 (ENSMUSG00000038416) #32	Upf3a (ENSMUSG00000038398) #33	Semp2l2a (ENSMUSG00000057116)
Ryukyu mouse	MODERN SPECIES	17	MGP_CAROLIEiJ_G0030820 #12	MGP_CAROLIEiJ_G0030821 #9	MGP_CAROLIEiJ_G0030822 #10	MGP_CAROLIEiJ_G0030823	Sox1 (MGP_CAROLIEiJ_G0030824)	MGP_CAROLIEiJ_G0030825	Spaca7 (MGP_CAROLIEiJ_G0030826) #12	MGP_CAROLIEiJ_G0030827	Atp11a (MGP_CAROLIEiJ_G0030828) #14	Mcf2l (MGP_CAROLIEiJ_G0030829) #15	F7 (MGP_CAROLIEiJ_G0030830) #16	MGP_CAROLIEiJ_G0030831 #17	Proz (MGP_CAROLIEiJ_G0030832) #18	Pcid2 (MGP_CAROLIEiJ_G0030833) #19	MGP_CAROLIEiJ_G0030834 #21	Lamp1 (MGP_CAROLIEiJ_G0030835) #22	Grtp1 (MGP_CAROLIEiJ_G0030836) #23	Adprhl1 (MGP_CAROLIEiJ_G0030837) #25	MGP_CAROLIEiJ_G0030838	Tmco3 (MGP_CAROLIEiJ_G0030839) #26	Atp4b (MGP_CAROLIEiJ_G0030840) #28	MGP_CAROLIEiJ_G0030841 #29	Tmem255b (MGP_CAROLIEiJ_G0030842)	Gas6 (MGP_CAROLIEiJ_G0030843)	1700029H14Rik (MGP_CAROLIEiJ_G0030844) #30	Rasa3 (MGP_CAROLIEiJ_G0030845) #31	MGP_CAROLIEiJ_G0030846	Cdc16 (MGP_CAROLIEiJ_G0030847) #32	Upf3a (MGP_CAROLIEiJ_G0030848) #33	Champ1 (MGP_CAROLIEiJ_G0030849) #34	Coprs (MGP_CAROLIEiJ_G0030850)
Shrew mouse	MODERN SPECIES	10	Spaca7b (MGP_PahariEiJ_G0021282) #12	Arhgef7 (MGP_PahariEiJ_G0021283) #9	MGP_PahariEiJ_G0021284 #10	MGP_PahariEiJ_G0021285	Sox1 (MGP_PahariEiJ_G0021286)	MGP_PahariEiJ_G0021287	Spaca7 (MGP_PahariEiJ_G0021288) #12	Tubgcp3 (MGP_PahariEiJ_G0021289) #13	Atp11a (MGP_PahariEiJ_G0021290) #14	Mcf2l (MGP_PahariEiJ_G0021291) #15	F7 (MGP_PahariEiJ_G0021292) #16	F10 (MGP_PahariEiJ_G0021293) #17	Proz (MGP_PahariEiJ_G0021294) #18	Pcid2 (MGP_PahariEiJ_G0021295) #19	Cul4a (MGP_PahariEiJ_G0021296) #21	Lamp1 (MGP_PahariEiJ_G0021297) #22	Grtp1 (MGP_PahariEiJ_G0021298) #23	MGP_PahariEiJ_G0021299 #25	Dcun1d2 (MGP_PahariEiJ_G0021300)	Tmco3 (MGP_PahariEiJ_G0021301) #26	Tfdp1 (MGP_PahariEiJ_G0021302) #27	Atp4b (MGP_PahariEiJ_G0021303) #28	Grk1 (MGP_PahariEiJ_G0021304) #29	Tmem255b (MGP_PahariEiJ_G0021305)	Gas6 (MGP_PahariEiJ_G0021306)	1700029H14Rik (MGP_PahariEiJ_G0021307) #30	Rasa3 (MGP_PahariEiJ_G0021308) #31	MGP_PahariEiJ_G0021309	Cdc16 (MGP_PahariEiJ_G0021310) #32	Upf3a (MGP_PahariEiJ_G0021311) #33	Champ1 (MGP_PahariEiJ_G0021312) #34
Rat	MODERN SPECIES	7	AABR07026557.1 (ENSRNOG00000053136) #12	Arhgef7 (ENSRNOG00000012934) #9	Tex29 (ENSRNOG00000033585) #10	Sox1 (ENSRNOG00000064976)	LOC102553495 (ENSRNOG00000031681) #11	Spaca7 (ENSRNOG00000054006) #12	Tubgcp3 (ENSRNOG00000017085) #13	Atp11a (ENSRNOG00000017154) #14	Mcf2l (ENSRNOG00000028426) #15	F7 (ENSRNOG00000032737) #16	F10 (ENSRNOG00000033444) #17	Proz (ENSRNOG00000019700) #18	Pcid2 (ENSRNOG00000025222) #19	ENSRNOG00000064057	Cul4a (ENSRNOG00000019649) #21	Lamp1 (ENSRNOG00000019629) #22	Adprhl1 (ENSRNOG00000019504) #25	Dcun1d2 (ENSRNOG00000019473)	Tmco3 (ENSRNOG00000046973) #26	Tfdp1 (ENSRNOG00000019222) #27	Atp4b (ENSRNOG00000018543) #28	Grk1 (ENSRNOG00000018430) #29	Tmem255b (ENSRNOG00000026336)	Gas6 (ENSRNOG00000018233)	LOC290876 (ENSRNOG00000026740) #30	Rasa3 (ENSRNOG00000017671) #31	Cfap97d2 (ENSRNOG00000042867)	Cdc16 (ENSRNOG00000017536) #32	Upf3a (ENSRNOG00000017397) #33	Champ1 (ENSRNOG00000000112) #34	Coprs (ENSRNOG00000000111)
Cricetidae	ANCESTRAL SPECIES	23	ENSGT00940000155401.i.a #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Cricetinae	ANCESTRAL SPECIES	25	ENSGT00940000155401.i.a #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	121	ENSCGRG00001015868 #7	ENSCGRG00001016819 #8	ENSCGRG00001020300	Arhgef7 (ENSCGRG00001000930) #9	Sox1 (ENSCGRG00001010891)	ENSCGRG00001015120 #11	Spaca7 (ENSCGRG00001020199) #12	Tubgcp3 (ENSCGRG00001000362) #13	Atp11a (ENSCGRG00001006749) #14	Mcf2l (ENSCGRG00001023772) #15	F7 (ENSCGRG00001000226) #16	F10 (ENSCGRG00001003768) #17	Proz (ENSCGRG00001021551) #18	ENSCGRG00001012494 #19	Cul4a (ENSCGRG00001020187) #21	LAMP1 (ENSCGRG00001005956) #22	Grtp1 (ENSCGRG00001015044) #23	ENSCGRG00001015139 #25	Dcun1d2 (ENSCGRG00001015394)	Tmco3 (ENSCGRG00001018979) #26	Tfdp1 (ENSCGRG00001024323) #27	Atp4b (ENSCGRG00001018412) #28	Grk1 (ENSCGRG00001005647) #29	Tmem255b (ENSCGRG00001002783)	Gas6 (ENSCGRG00001000363)	1700029H14Rik (ENSCGRG00001011401) #30	Rasa3 (ENSCGRG00001018123) #31	ENSCGRG00001000063	Cdc16 (ENSCGRG00001006545) #32	Upf3a (ENSCGRG00001017387) #33	Champ1 (ENSCGRG00001010456) #34
Chinese hamster chok1gshd	MODERN SPECIES	274															Ube3a (ENSCGRG00001010781)	ENSCGRG00001013331 #22	Atp10a (ENSCGRG00001015628)	ENSCGRG00001017022	ENSCGRG00001017313	ENSCGRG00001008003	Gabrb3 (ENSCGRG00001014154)	Gabra5 (ENSCGRG00001016341)	Gabrg3 (ENSCGRG00001009703)	Oca2 (ENSCGRG00001012797)	Herc2 (ENSCGRG00001021715)	Nipa1 (ENSCGRG00001003595)	Nipa2 (ENSCGRG00001004391)	Cyfip1 (ENSCGRG00001009484)	Tubgcp5 (ENSCGRG00001016603)	Siglech (ENSCGRG00001011364)	ENSCGRG00001012620
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00390000006347.b	ENSGT00940000155401.j #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Northern American deer mouse	MODERN SPECIES	8	Ankrd10 (ENSPEMG00000020125) #8	ENSPEMG00000029665	ENSPEMG00000026823	Arhgef7 (ENSPEMG00000017262) #9	ENSPEMG00000027895 #10	ENSPEMG00000029867	Spaca7 (ENSPEMG00000018629) #12	Tubgcp3 (ENSPEMG00000013872) #13	Atp11a (ENSPEMG00000008831) #14	Mcf2l (ENSPEMG00000019409) #15	F7 (ENSPEMG00000019915) #16	F10 (ENSPEMG00000004452) #17	Proz (ENSPEMG00000020154) #18	Pcid2 (ENSPEMG00000019575) #19	Cul4a (ENSPEMG00000019569) #21	Lamp1 (ENSPEMG00000020244) #22	Grtp1 (ENSPEMG00000019914) #23	ENSPEMG00000017800 #25	Dcun1d2 (ENSPEMG00000011440)	Tmco3 (ENSPEMG00000009817) #26	Tfdp1 (ENSPEMG00000020251) #27	Atp4b (ENSPEMG00000020168) #28	Grk1 (ENSPEMG00000019528) #29	ENSPEMG00000030658	Tmem255b (ENSPEMG00000011727)	Gas6 (ENSPEMG00000018326)	1700029H14Rik (ENSPEMG00000003001) #30	Rasa3 (ENSPEMG00000019978) #31	Cfap97d2 (ENSPEMG00000019811)	Cdc16 (ENSPEMG00000020029) #32	Upf3a (ENSPEMG00000019968) #33
Prairie vole	MODERN SPECIES	90	ENSMOCG00000000376 #7	Ankrd10 (ENSMOCG00000018958) #8	Spaca7b (ENSMOCG00000008790) #12	Arhgef7 (ENSMOCG00000018795) #9	Sox1 (ENSMOCG00000003790)	ENSMOCG00000000120 #11	Spaca7 (ENSMOCG00000021890) #12	Tubgcp3 (ENSMOCG00000002056) #13	Atp11a (ENSMOCG00000014274) #14	Mcf2l (ENSMOCG00000022143) #15	F7 (ENSMOCG00000009377) #16	F10 (ENSMOCG00000007866) #17	Proz (ENSMOCG00000004196) #18	Pcid2 (ENSMOCG00000012755) #19	Cul4a (ENSMOCG00000023020) #21	Lamp1 (ENSMOCG00000004708) #22	Grtp1 (ENSMOCG00000012987) #23	ENSMOCG00000018092 #25	Dcun1d2 (ENSMOCG00000012473)	Tmco3 (ENSMOCG00000006466) #26	Tfdp1 (ENSMOCG00000006476) #27	Atp4b (ENSMOCG00000017755) #28	Grk1 (ENSMOCG00000012984) #29	Tmem255b (ENSMOCG00000015749)	Gas6 (ENSMOCG00000019353)	1700029H14Rik (ENSMOCG00000010225) #30	Rasa3 (ENSMOCG00000020040) #31	ENSMOCG00000017693	Cdc16 (ENSMOCG00000021281) #32	Upf3a (ENSMOCG00000000550) #33	Champ1 (ENSMOCG00000001969) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	1434					ENSNGAG00000017969 #9	Spaca7 (ENSNGAG00000019273) #12	Tubgcp3 (ENSNGAG00000015176) #13	Atp11a (ENSNGAG00000022857) #14	ENSNGAG00000019668	Mcf2l (ENSNGAG00000017178) #15	F7 (ENSNGAG00000019114) #16	F10 (ENSNGAG00000023812) #17	Proz (ENSNGAG00000021138) #18	Pcid2 (ENSNGAG00000024060) #19	Cul4a (ENSNGAG00000021973) #21	Lamp1 (ENSNGAG00000010087) #22	Grtp1 (ENSNGAG00000011456) #23	ENSNGAG00000019267 #25	Dcun1d2 (ENSNGAG00000017296)	Tmco3 (ENSNGAG00000023985) #26	Tfdp1 (ENSNGAG00000020008) #27	Atp4b (ENSNGAG00000022498) #28	Grk1 (ENSNGAG00000023548) #29	Tmem255b (ENSNGAG00000007352)	Gas6 (ENSNGAG00000024183)	1700029H14Rik (ENSNGAG00000001039) #30
Lesser Egyptian jerboa	MODERN SPECIES	101	ENSJJAG00000024361	ENSJJAG00000004497	Ing1 (ENSJJAG00000016932) #7	Ankrd10 (ENSJJAG00000018320) #8	Arhgef7 (ENSJJAG00000022343) #9	ENSJJAG00000004445	Tubgcp3 (ENSJJAG00000013461) #13	ENSJJAG00000017861 #14	ENSJJAG00000000605 #14	Mcf2l (ENSJJAG00000009960) #15	F7 (ENSJJAG00000024415) #16	F10 (ENSJJAG00000024431) #17	Proz (ENSJJAG00000010980) #18	Pcid2 (ENSJJAG00000013502) #19	Cul4a (ENSJJAG00000022041) #21	Lamp1 (ENSJJAG00000024430) #22	ENSJJAG00000016679 #23	ENSJJAG00000018306 #25	Dcun1d2 (ENSJJAG00000022654)	Tmco3 (ENSJJAG00000021496) #26	Tfdp1 (ENSJJAG00000011213) #27	Atp4b (ENSJJAG00000018144) #28	Grk1 (ENSJJAG00000011128) #29	Tmem255b (ENSJJAG00000005736)	Gas6 (ENSJJAG00000018871)	1700029H14Rik (ENSJJAG00000017726) #30	Rasa3 (ENSJJAG00000022646) #31	ENSJJAG00000012456	Cdc16 (ENSJJAG00000018327) #32	ENSJJAG00000018099 #33	Champ1 (ENSJJAG00000022260) #34
Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00390000006347.b	ENSGT00940000155401.h #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401.h #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101.r #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b.h #33	ENSGT00730000111351 #34
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401.h #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101.r #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b.h #33	ENSGT00730000111351 #34
Guinea pig	MODERN SPECIES	5	COL4A2 (ENSCPOG00000010611)	RAB20 (ENSCPOG00000034193)	NAXD (ENSCPOG00000019974)	CARS2 (ENSCPOG00000024839)	ING1 (ENSCPOG00000035111) #7	ANKRD10 (ENSCPOG00000032064) #8	ARHGEF7 (ENSCPOG00000010585) #9	TUBGCP3 (ENSCPOG00000027201) #13	ATP11A (ENSCPOG00000010539) #14	MCF2L (ENSCPOG00000025369) #15	F7 (ENSCPOG00000005296) #16	F10 (ENSCPOG00000005297) #17	PROZ (ENSCPOG00000014204) #18	PCID2 (ENSCPOG00000014206) #19	CUL4A (ENSCPOG00000007488) #21	LAMP1 (ENSCPOG00000021441) #22	GRTP1 (ENSCPOG00000013842) #23	ENSCPOG00000014361 #25	DCUN1D2 (ENSCPOG00000014364)	TMCO3 (ENSCPOG00000006999) #26	TFDP1 (ENSCPOG00000013486) #27	ATP4B (ENSCPOG00000013488) #28	GRK1 (ENSCPOG00000013493) #29	TMEM255B (ENSCPOG00000001504)	GAS6 (ENSCPOG00000007335)	C13orf46 (ENSCPOG00000022842) #30	RASA3 (ENSCPOG00000007813) #31	ENSCPOG00000030796	CDC16 (ENSCPOG00000005324) #32	UPF3A (ENSCPOG00000006824) #33	ENSCPOG00000032917
Hystricomorpha_b	ANCESTRAL SPECIES	44	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401.h #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101.r #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b.h #33	ENSGT00730000111351 #34
Long-tailed chinchilla	MODERN SPECIES	111	NAXD (ENSCLAG00000008979)	ING1 (ENSCLAG00000017685) #7	CARS2 (ENSCLAG00000010030)	ANKRD10 (ENSCLAG00000009950) #8	ENSCLAG00000015201	ARHGEF7 (ENSCLAG00000002159) #9	ENSCLAG00000001914 #10	TUBGCP3 (ENSCLAG00000001848) #13	ATP11A (ENSCLAG00000006784) #14	MCF2L (ENSCLAG00000002098) #15	F7 (ENSCLAG00000004276) #16	F10 (ENSCLAG00000004028) #17	PROZ (ENSCLAG00000002909) #18	PCID2 (ENSCLAG00000002752) #19	CUL4A (ENSCLAG00000002629) #21	LAMP1 (ENSCLAG00000003876) #22	GRTP1 (ENSCLAG00000003539) #23	ENSCLAG00000002749 #25	DCUN1D2 (ENSCLAG00000003327)	TMCO3 (ENSCLAG00000003648) #26	TFDP1 (ENSCLAG00000003535) #27	ATP4B (ENSCLAG00000003301) #28	GRK1 (ENSCLAG00000003146) #29	TMEM255B (ENSCLAG00000002978)	GAS6 (ENSCLAG00000002827)	ENSCLAG00000002436 #30	RASA3 (ENSCLAG00000006342) #31	CDC16 (ENSCLAG00000006234) #32	CHAMP1 (ENSCLAG00000017633) #34
Degu	MODERN SPECIES	80	NAXD (ENSODEG00000008623)	CARS2 (ENSODEG00000008933)	ING1 (ENSODEG00000008422) #7	ENSODEG00000008348 #8	ARHGEF7 (ENSODEG00000009477) #9	ENSODEG00000009444	ENSODEG00000019619	TUBGCP3 (ENSODEG00000008609) #13	ENSODEG00000008533	ATP11A (ENSODEG00000008675) #14	MCF2L (ENSODEG00000009412) #15	F10 (ENSODEG00000008696) #17	PROZ (ENSODEG00000009284) #18	PCID2 (ENSODEG00000007738) #19	CUL4A (ENSODEG00000007751) #21	LAMP1 (ENSODEG00000009126) #22	GRTP1 (ENSODEG00000007871) #23	ENSODEG00000008619	ENSODEG00000007633 #25	DCUN1D2 (ENSODEG00000008899)	TMCO3 (ENSODEG00000009661) #26	ENSODEG00000009187 #27	ATP4B (ENSODEG00000007695) #28	GRK1 (ENSODEG00000007663) #29	TMEM255B (ENSODEG00000007605)	GAS6 (ENSODEG00000012335)	C13orf46 (ENSODEG00000007606) #30	RASA3 (ENSODEG00000008030) #31	ENSODEG00000008845	ENSODEG00000019558	CDC16 (ENSODEG00000008438) #32
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000001367	NSDHL (ENSHGLG00000034743)	CETN2 (ENSHGLG00000000679)	ENSHGLG00000034611	ENSHGLG00000041325	GABRQ (ENSHGLG00000000255)	ENSHGLG00000000811	ENSHGLG00000042494	ENSHGLG00000033171	ENSHGLG00000002103 #15	ENSHGLG00000046767 #16	F10 (ENSHGLG00000039136) #17	PROZ (ENSHGLG00000037291) #18	PCID2 (ENSHGLG00000003349) #19	CUL4A (ENSHGLG00000002538) #21	LAMP1 (ENSHGLG00000002376) #22	ENSHGLG00000002306 #23	ENSHGLG00000036527 #24	DCUN1D2 (ENSHGLG00000004905)	TMCO3 (ENSHGLG00000003925) #26	TFDP1 (ENSHGLG00000003633) #27	ATP4B (ENSHGLG00000003223) #28	GRK1 (ENSHGLG00000002895) #29	TMEM255B (ENSHGLG00000002627)	GAS6 (ENSHGLG00000002481)	ENSHGLG00000038427	ENSHGLG00000002286 #30	RASA3 (ENSHGLG00000002110) #31	CFAP97D2 (ENSHGLG00000049782)	CDC16 (ENSHGLG00000001834) #32	ENSHGLG00000034132 #33
Sciuridae	ANCESTRAL SPECIES	46	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401.g #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Marmotini	ANCESTRAL SPECIES	29	ENSGT00940000157678	ENSGT00940000157234	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401.g #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Alpin marmot	MODERN SPECIES	13	RAB20 (ENSMMMG00000020082)	NAXD (ENSMMMG00000020065)	CARS2 (ENSMMMG00000019885)	ENSMMMG00000019878 #7	ENSMMMG00000019874 #8	ENSMMMG00000019872 #8	ARHGEF7 (ENSMMMG00000019817) #9	ENSMMMG00000019809	TUBGCP3 (ENSMMMG00000019793) #13	ATP11A (ENSMMMG00000019764) #14	MCF2L (ENSMMMG00000019681) #15	F7 (ENSMMMG00000019651) #16	F10 (ENSMMMG00000019639) #17	PCID2 (ENSMMMG00000019625) #19	CUL4A (ENSMMMG00000014686) #21	LAMP1 (ENSMMMG00000014633) #22	GRTP1 (ENSMMMG00000014534) #23	ENSMMMG00000014528 #25	ENSMMMG00000014431	TMCO3 (ENSMMMG00000014404) #26	TFDP1 (ENSMMMG00000014381) #27	ATP4B (ENSMMMG00000014370) #28	GRK1 (ENSMMMG00000014330) #29	TMEM255B (ENSMMMG00000014307)	GAS6 (ENSMMMG00000014286)	C13orf46 (ENSMMMG00000014275) #30	RASA3 (ENSMMMG00000014242) #31	CDC16 (ENSMMMG00000014221) #32	UPF3A (ENSMMMG00000014171) #33	CHAMP1 (ENSMMMG00000014156) #34
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00940000157678	ENSGT00940000157234	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401.g #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271
Squirrel	MODERN SPECIES	72	COL4A1 (ENSSTOG00000004254)	COL4A2 (ENSSTOG00000026757)	RAB20 (ENSSTOG00000008251)	NAXD (ENSSTOG00000012153)	CARS2 (ENSSTOG00000012158)	ENSSTOG00000026920 #7	ANKRD10 (ENSSTOG00000023244) #8	ARHGEF7 (ENSSTOG00000014578) #9	TUBGCP3 (ENSSTOG00000000803) #13	ATP11A (ENSSTOG00000000270) #14	MCF2L (ENSSTOG00000003498) #15	F7 (ENSSTOG00000025843) #16	F10 (ENSSTOG00000020166) #17	PCID2 (ENSSTOG00000003919) #19	CUL4A (ENSSTOG00000003940) #21	LAMP1 (ENSSTOG00000003961) #22	GRTP1 (ENSSTOG00000003972) #23	ENSSTOG00000007972 #25	DCUN1D2 (ENSSTOG00000007978)	TMCO3 (ENSSTOG00000023226) #26	TFDP1 (ENSSTOG00000002592) #27	ATP4B (ENSSTOG00000013113) #28	GRK1 (ENSSTOG00000027210) #29	TMEM255B (ENSSTOG00000026508)	GAS6 (ENSSTOG00000020442)
Arctic ground squirrel	MODERN SPECIES	649								ENSUPAG00010011925	TUBGCP3 (ENSUPAG00010011868) #13	ATP11A (ENSUPAG00010011811) #14	MCF2L (ENSUPAG00010011660) #15	F7 (ENSUPAG00010011625) #16	F10 (ENSUPAG00010011613) #17	PCID2 (ENSUPAG00010011560) #19	CUL4A (ENSUPAG00010011517) #21	LAMP1 (ENSUPAG00010011509) #22	GRTP1 (ENSUPAG00010011479) #23
Eurasian red squirrel	MODERN SPECIES	13	ING1 (ENSSVLG00005000309) #7	ENSSVLG00005000341 #8	ARHGEF7 (ENSSVLG00005000486) #9	SOX1 (ENSSVLG00005000621)	ENSSVLG00005000637 #12	ENSSVLG00005000688 #13	ENSSVLG00005000771	ATP11A (ENSSVLG00005000814) #14	MCF2L (ENSSVLG00005001241) #15	ENSSVLG00005001682	F7 (ENSSVLG00005001724) #16	F10 (ENSSVLG00005001796) #17	PCID2 (ENSSVLG00005001897) #19	ENSSVLG00005001960 #21	ENSSVLG00005002003	LAMP1 (ENSSVLG00005002018) #22	GRTP1 (ENSSVLG00005002053) #23	ENSSVLG00005002088 #25	ENSSVLG00005002123	TMCO3 (ENSSVLG00005002150) #26	ATP4B (ENSSVLG00005002190) #28	GRK1 (ENSSVLG00005002225) #29	TMEM255B (ENSSVLG00005002264)	GAS6 (ENSSVLG00005002307)	ENSSVLG00005002351 #30	RASA3 (ENSSVLG00005002398) #31	CFAP97D2 (ENSSVLG00005002430)	ENSSVLG00005002469 #32	ENSSVLG00005002544 #32	ENSSVLG00005002676	CHAMP1 (ENSSVLG00005002688) #34
Lagomorpha	ANCESTRAL SPECIES	255														ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927.g #29
Rabbit	MODERN SPECIES	688														PCID2 (ENSOCUG00000009600) #19	CUL4A (ENSOCUG00000009610) #21	LAMP1 (ENSOCUG00000022480) #22	ENSOCUG00000021086 #23	ENSOCUG00000026982 #25	DCUN1D2 (ENSOCUG00000001448)	TMCO3 (ENSOCUG00000025173) #26	TFDP1 (ENSOCUG00000006771) #27	ATP4B (ENSOCUG00000027254) #28	ENSOCUG00000014700 #29
Pika	MODERN SPECIES	4115																ENSOPRG00000010019 #22
Laurasiatheria	ANCESTRAL SPECIES	20	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182899.B.a #22
Common shrew	MODERN SPECIES	6090																ENSSARG00000000241 #22
Laurasiatheria_a	ANCESTRAL SPECIES	21	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00940000164099.a.a
Artiodactyla	ANCESTRAL SPECIES	21	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32
Suina	ANCESTRAL SPECIES	29	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Chacoan peccary	MODERN SPECIES	909											MCF2L (ENSCWAG00000009522) #15	F7 (ENSCWAG00000009824) #16	F10 (ENSCWAG00000009966) #17	PCID2 (ENSCWAG00000010034) #19	CUL4A (ENSCWAG00000010155) #21	LAMP1 (ENSCWAG00000010230) #22	GRTP1 (ENSCWAG00000010327) #23
Pig	MODERN SPECIES	2	CARS2 (ENSSSCG00000031757)	ING1 (ENSSSCG00000034818) #7	ANKRD10 (ENSSSCG00000033732) #8	ENSSSCG00000036545	ARHGEF7 (ENSSSCG00000009551) #9	ENSSSCG00000046437	TEX29 (ENSSSCG00000061055) #10	SOX1 (ENSSSCG00000052182)	TUBGCP3 (ENSSSCG00000009553) #13	ATP11A (ENSSSCG00000037561) #14	MCF2L (ENSSSCG00000021158) #15	F7 (ENSSSCG00000029503) #16	F10 (ENSSSCG00000009558) #17	PCID2 (ENSSSCG00000009557) #19	CUL4A (ENSSSCG00000009556) #21	LAMP1 (ENSSSCG00000009555) #22	GRTP1 (ENSSSCG00000009554) #23	ENSSSCG00000048674	ENSSSCG00000024103 #25	DCUN1D2 (ENSSSCG00000026536)	TMCO3 (ENSSSCG00000009563) #26	TFDP1 (ENSSSCG00000009560) #27	ATP4B (ENSSSCG00000009561) #28	GRK1 (ENSSSCG00000009562) #29	TMEM255B (ENSSSCG00000009564)	GAS6 (ENSSSCG00000009565)	C13orf46 (ENSSSCG00000009566) #30	RASA3 (ENSSSCG00000009567) #31	ENSSSCG00000054303	CDC16 (ENSSSCG00000020899) #32	UPF3A (ENSSSCG00000024679) #33
Artiodactyla_a	ANCESTRAL SPECIES	22	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32
Artiodactyla_b	ANCESTRAL SPECIES	22	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32
Cetacea	ANCESTRAL SPECIES	20	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Odontoceti	ANCESTRAL SPECIES	21	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888.a	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Odontoceti_a	ANCESTRAL SPECIES	30	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888.a	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Odontoceti_b	ANCESTRAL SPECIES	21	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888.a	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888.a	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT01030000234551.k.d.b.b.c.a	ENSGT00390000000337	ENSGT00940000161993.a
Narwhal	MODERN SPECIES	315	CARS2 (ENSMMNG00015018079)	ING1 (ENSMMNG00015018040) #7	ANKRD10 (ENSMMNG00015017964) #8	ENSMMNG00015017913	ARHGEF7 (ENSMMNG00015017417) #9	ENSMMNG00015017235 #10	TUBGCP3 (ENSMMNG00015017186) #13	ATP11A (ENSMMNG00015017059) #14	ENSMMNG00015017016	ENSMMNG00015017002 #15	F7 (ENSMMNG00015016773) #16	F10 (ENSMMNG00015016667) #17	PROZ (ENSMMNG00015016546) #18	PCID2 (ENSMMNG00015016467) #19	CUL4A (ENSMMNG00015016366) #21	LAMP1 (ENSMMNG00015016263) #22	GRTP1 (ENSMMNG00015016213) #23	ENSMMNG00015016151 #25	ENSMMNG00015016112	TMCO3 (ENSMMNG00015016015) #26	TFDP1 (ENSMMNG00015015948) #27	ATP4B (ENSMMNG00015021905) #28	GRK1 (ENSMMNG00015021903) #29	TMEM255B (ENSMMNG00015021897)	GAS6 (ENSMMNG00015021891)	ENSMMNG00015021883 #30	RASA3 (ENSMMNG00015021872) #31	ENSMMNG00015021864	ENSMMNG00015021860	CDC16 (ENSMMNG00015021856) #32	UPF3A (ENSMMNG00015021850) #33
Beluga whale	MODERN SPECIES	31	NAXD (ENSDLEG00000018877)	CARS2 (ENSDLEG00000018850)	ING1 (ENSDLEG00000018846) #7	ANKRD10 (ENSDLEG00000018841) #8	ENSDLEG00000018836	ARHGEF7 (ENSDLEG00000018759) #9	ENSDLEG00000018740 #10	TUBGCP3 (ENSDLEG00000018701) #13	ATP11A (ENSDLEG00000013893) #14	MCF2L (ENSDLEG00000009953) #15	F7 (ENSDLEG00000009557) #16	F10 (ENSDLEG00000009458) #17	ENSDLEG00000009398 #18	PCID2 (ENSDLEG00000009170) #19	CUL4A (ENSDLEG00000009095) #21	LAMP1 (ENSDLEG00000009027) #22	GRTP1 (ENSDLEG00000008989) #23	ENSDLEG00000008952 #25	TMCO3 (ENSDLEG00000008916) #26	TFDP1 (ENSDLEG00000008869) #27	ATP4B (ENSDLEG00000008807) #28	GRK1 (ENSDLEG00000008779) #29	ENSDLEG00000008749	GAS6 (ENSDLEG00000008711)	ENSDLEG00000008690 #30	RASA3 (ENSDLEG00000008616) #31	ENSDLEG00000008601	CDC16 (ENSDLEG00000008538) #32	UPF3A (ENSDLEG00000008466) #33	CHAMP1 (ENSDLEG00000008435) #34
Vaquita	MODERN SPECIES	9	CARS2 (ENSPSNG00000017101)	ING1 (ENSPSNG00000017292) #7	ANKRD10 (ENSPSNG00000017351) #8	ENSPSNG00000017382	ARHGEF7 (ENSPSNG00000017521) #9	ENSPSNG00000018010	ENSPSNG00000018033 #10	TUBGCP3 (ENSPSNG00000018215) #13	ATP11A (ENSPSNG00000018389) #14	MCF2L (ENSPSNG00000018842) #15	F7 (ENSPSNG00000020088) #16	F10 (ENSPSNG00000020166) #17	PROZ (ENSPSNG00000020298) #18	PCID2 (ENSPSNG00000020365) #19	CUL4A (ENSPSNG00000020396) #21	LAMP1 (ENSPSNG00000020457) #22	GRTP1 (ENSPSNG00000020527) #23	ENSPSNG00000020658 #25	TMCO3 (ENSPSNG00000020760) #26	TFDP1 (ENSPSNG00000020838) #27	ATP4B (ENSPSNG00000020874) #28	GRK1 (ENSPSNG00000020915) #29	TMEM255B (ENSPSNG00000020974)	GAS6 (ENSPSNG00000021065)	C13orf46 (ENSPSNG00000021173) #30	RASA3 (ENSPSNG00000021227) #31	ENSPSNG00000021288	ENSPSNG00000021321	CDC16 (ENSPSNG00000021357) #32	UPF3A (ENSPSNG00000021422) #33	CHAMP1 (ENSPSNG00000021459) #34
Dolphin	MODERN SPECIES	186														PCID2 (ENSTTRG00000004428) #19	CUL4A (ENSTTRG00000004451) #21	LAMP1 (ENSTTRG00000004460) #22	GRTP1 (ENSTTRG00000004466) #23
Sperm whale	MODERN SPECIES	4	NAXD (ENSPCTG00005019675)	CARS2 (ENSPCTG00005019781)	ENSPCTG00005019933 #7	ANKRD10 (ENSPCTG00005019971) #8	ARHGEF7 (ENSPCTG00005020013) #9	ENSPCTG00005020189 #10	SOX1 (ENSPCTG00005020231)	TUBGCP3 (ENSPCTG00005020246) #13	ATP11A (ENSPCTG00005020296) #14	ENSPCTG00005020372	MCF2L (ENSPCTG00005020455) #15	F7 (ENSPCTG00005021082) #16	F10 (ENSPCTG00005021151) #17	PCID2 (ENSPCTG00005021192) #19	CUL4A (ENSPCTG00005021256) #21	LAMP1 (ENSPCTG00005004277) #22	GRTP1 (ENSPCTG00005004335) #23	ADPRHL1 (ENSPCTG00005004408) #23	TMCO3 (ENSPCTG00005004451) #26	TFDP1 (ENSPCTG00005004541) #27	ATP4B (ENSPCTG00005004620) #28	GRK1 (ENSPCTG00005004647) #29	TMEM255B (ENSPCTG00005004695)	GAS6 (ENSPCTG00005004752)	RASA3 (ENSPCTG00005004836) #31	CDC16 (ENSPCTG00005004859) #32	UPF3A (ENSPCTG00005004980) #33	CHAMP1 (ENSPCTG00005005025) #34	CACNA1B (ENSPCTG00005005186)	EHMT1 (ENSPCTG00005006443)	ARRDC1 (ENSPCTG00005006679)
Blue whale	MODERN SPECIES	9	ING1 (ENSBMSG00010018290) #7	ANKRD10 (ENSBMSG00010018322) #8	ARHGEF7 (ENSBMSG00010018422) #9	ENSBMSG00010019702 #10	SOX1 (ENSBMSG00010019722)	TUBGCP3 (ENSBMSG00010019754) #13	ATP11A (ENSBMSG00010019835) #14	ENSBMSG00010019911	ENSBMSG00010019926 #15	ENSBMSG00010019955 #15	F7 (ENSBMSG00010019994) #16	ENSBMSG00010020037 #17	PROZ (ENSBMSG00010020083) #18	PCID2 (ENSBMSG00010020101) #19	CUL4A (ENSBMSG00010020133) #21	LAMP1 (ENSBMSG00010020185) #22	GRTP1 (ENSBMSG00010020224) #23	ENSBMSG00010020259 #25	TMCO3 (ENSBMSG00010020320) #26	TFDP1 (ENSBMSG00010020381) #27	ATP4B (ENSBMSG00010020427) #28	GRK1 (ENSBMSG00010020466) #29	ENSBMSG00010020501	ENSBMSG00010020511	GAS6 (ENSBMSG00010020537)	RASA3 (ENSBMSG00010020612) #31	ENSBMSG00010020643	CDC16 (ENSBMSG00010020690) #32	UPF3A (ENSBMSG00010020774) #33	CHAMP1 (ENSBMSG00010020841) #34
Pecora	ANCESTRAL SPECIES	23	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Percora_a	ANCESTRAL SPECIES	25	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B.e #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Bovidae	ANCESTRAL SPECIES	25	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B.e #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Caprinae	ANCESTRAL SPECIES	28	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B.e #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Rambouillet Sheep	MODERN SPECIES	1	CARS2 (ENSOARG00020004534)	ING1 (ENSOARG00020004606) #7	ANKRD10 (ENSOARG00020004618) #8	ENSOARG00020004658 #10	ARHGEF7 (ENSOARG00020004697) #9	SOX1 (ENSOARG00020004913)	ENSOARG00020004925 #11	TUBGCP3 (ENSOARG00020004966) #13	ATP11A (ENSOARG00020005296) #14	MCF2L (ENSOARG00020005760) #15	F7 (ENSOARG00020006189) #16	F10 (ENSOARG00020006223) #17	PROZ (ENSOARG00020006261) #18	PCID2 (ENSOARG00020006389) #19	CUL4A (ENSOARG00020006678) #21	LAMP1 (ENSOARG00020006894) #22	GRTP1 (ENSOARG00020007004) #23	ENSOARG00020007147 #25	ENSOARG00020007174	TMCO3 (ENSOARG00020007230) #26	ATP4B (ENSOARG00020007387) #28	GRK1 (ENSOARG00020007457) #29	ENSOARG00020007532	GAS6 (ENSOARG00020007775)	C13orf46 (ENSOARG00020008261) #30	RASA3 (ENSOARG00020008377) #31	ENSOARG00020008741	CDC16 (ENSOARG00020008793) #32	UPF3A (ENSOARG00020008874) #33	CHAMP1 (ENSOARG00020008984) #34
Goat	MODERN SPECIES	35										MCF2L (ENSCHIG00000000066) #15	F7 (ENSCHIG00000000103) #16	F10 (ENSCHIG00000000133) #17	PROZ (ENSCHIG00000000165) #18	PCID2 (ENSCHIG00000000201) #19	CUL4A (ENSCHIG00000000240) #21	LAMP1 (ENSCHIG00000000277) #22	GRTP1 (ENSCHIG00000000310) #23	ENSCHIG00000000345 #25	DCUN1D2 (ENSCHIG00000000376)	TMCO3 (ENSCHIG00000000410) #26	TFDP1 (ENSCHIG00000000446) #27	ATP4B (ENSCHIG00000009370) #28	GRK1 (ENSCHIG00000009083) #29	TMEM255B (ENSCHIG00000012958)	GAS6 (ENSCHIG00000015637)	ENSCHIG00000018425 #30	RASA3 (ENSCHIG00000020780) #31	CDC16 (ENSCHIG00000024332) #32	UPF3A (ENSCHIG00000008682) #33	CHAMP1 (ENSCHIG00000018564) #34
Bovinae	ANCESTRAL SPECIES	29	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B.e #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Bos	ANCESTRAL SPECIES	28	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B.e #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Bos_b	ANCESTRAL SPECIES	33	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B.e #9	ENSGT00510000049560 #10	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Hybrid Bos Indicus	MODERN SPECIES	3	RAB20 (ENSBIXG00005023601)	NAXD (ENSBIXG00005007733)	CARS2 (ENSBIXG00005004028)	ING1 (ENSBIXG00005004006) #7	ANKRD10 (ENSBIXG00005023340) #8	ARHGEF7 (ENSBIXG00005023213) #9	ENSBIXG00005022984 #10	TUBGCP3 (ENSBIXG00005022899) #13	ATP11A (ENSBIXG00005022819) #14	MCF2L (ENSBIXG00005006665) #15	F7 (ENSBIXG00005003839) #16	F10 (ENSBIXG00005022502) #17	PROZ (ENSBIXG00005022483) #18	PCID2 (ENSBIXG00005022462) #19	CUL4A (ENSBIXG00005022354) #21	ENSBIXG00005022163 #22	GRTP1 (ENSBIXG00005022121) #23	ENSBIXG00005022098 #24	ENSBIXG00005003745 #25	TMCO3 (ENSBIXG00005022038) #26	TFDP1 (ENSBIXG00005003709) #27	ATP4B (ENSBIXG00005021961) #28	GRK1 (ENSBIXG00005021942) #29	TMEM255B (ENSBIXG00005021917)	GAS6 (ENSBIXG00005021889)	ENSBIXG00005021836 #30	RASA3 (ENSBIXG00005003674) #31	ENSBIXG00005021714	CDC16 (ENSBIXG00005021663) #32	UPF3A (ENSBIXG00005003638) #33	CHAMP1 (ENSBIXG00005021552) #34
Cow	MODERN SPECIES	3	NAXD (ENSBTAG00000011466)	CARS2 (ENSBTAG00000011471)	ING1 (ENSBTAG00000025211) #7	ANKRD10 (ENSBTAG00000004041) #8	ARHGEF7 (ENSBTAG00000020726) #9	TEX29 (ENSBTAG00000007298) #10	SPACA7 (ENSBTAG00000054563) #12	TUBGCP3 (ENSBTAG00000044184) #13	ATP11A (ENSBTAG00000000446) #14	MCF2L (ENSBTAG00000017289) #15	F7 (ENSBTAG00000007411) #16	F10 (ENSBTAG00000016385) #17	PROZ (ENSBTAG00000019440) #18	PCID2 (ENSBTAG00000021725) #19	CUL4A (ENSBTAG00000020093) #21	LAMP1 (ENSBTAG00000010242) #22	GRTP1 (ENSBTAG00000010246) #23	ENSBTAG00000048756 #24	ENSBTAG00000020928 #25	DCUN1D2 (ENSBTAG00000018671)	TMCO3 (ENSBTAG00000015704) #26	TFDP1 (ENSBTAG00000019645) #27	ATP4B (ENSBTAG00000019961) #28	GRK1 (ENSBTAG00000019963) #29	TMEM255B (ENSBTAG00000019965)	GAS6 (ENSBTAG00000019964)	C12H13orf46 (ENSBTAG00000025192) #30	RASA3 (ENSBTAG00000019967) #31	ENSBTAG00000050250	CDC16 (ENSBTAG00000019971) #32	ENSBTAG00000051419
Bos_a	ANCESTRAL SPECIES	19	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B.e #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Domestic yak	MODERN SPECIES	6	ANKRD10 (ENSBGRG00000008761) #8	ARHGEF7 (ENSBGRG00000008825) #9	TEX29 (ENSBGRG00000009509) #10	SOX1 (ENSBGRG00000009555)	ENSBGRG00000009615 #11	ENSBGRG00000009648	TUBGCP3 (ENSBGRG00000009683) #13	ATP11A (ENSBGRG00000010116) #14	MCF2L (ENSBGRG00000010896) #15	F7 (ENSBGRG00000015550) #16	F10 (ENSBGRG00000015612) #17	PROZ (ENSBGRG00000015676) #18	PCID2 (ENSBGRG00000015739) #19	CUL4A (ENSBGRG00000015961) #21	GRTP1 (ENSBGRG00000016213) #23	LAMP1 (ENSBGRG00000016325) #22	ENSBGRG00000016539 #25	ENSBGRG00000016617	TMCO3 (ENSBGRG00000016679) #26	TFDP1 (ENSBGRG00000017078) #27	ATP4B (ENSBGRG00000017325) #28	GRK1 (ENSBGRG00000017415) #29	TMEM255B (ENSBGRG00000017560)	GAS6 (ENSBGRG00000017756)	ENSBGRG00000017918 #30	RASA3 (ENSBGRG00000017995) #31	ENSBGRG00000018383	CDC16 (ENSBGRG00000018425) #32	UPF3A (ENSBGRG00000019190) #33	CHAMP1 (ENSBGRG00000019502) #34	ENSBGRG00000019514
Wild yak	MODERN SPECIES	1390										MCF2L (ENSBMUG00000014257) #15	F7 (ENSBMUG00000013075) #16	F10 (ENSBMUG00000013057) #17	ENSBMUG00000013024 #18	PCID2 (ENSBMUG00000013003) #19	CUL4A (ENSBMUG00000012942) #21	LAMP1 (ENSBMUG00000012898) #22	GRTP1 (ENSBMUG00000012813) #23	ENSBMUG00000012657 #23
American bison	MODERN SPECIES	3372	RAB20 (ENSBBBG00000019390)	NAXD (ENSBBBG00000019410)	CARS2 (ENSBBBG00000019426)	ING1 (ENSBBBG00000019448) #7	ANKRD10 (ENSBBBG00000019453) #8	ENSBBBG00000019656 #9	ENSBBBG00000007320 #10	TUBGCP3 (ENSBBBG00000019707) #13	ATP11A (ENSBBBG00000019894) #14	MCF2L (ENSBBBG00000019938) #15	F7 (ENSBBBG00000019947) #16	F10 (ENSBBBG00000019957) #17	PROZ (ENSBBBG00000005399) #18	PCID2 (ENSBBBG00000005422) #19	CUL4A (ENSBBBG00000020099) #21	LAMP1 (ENSBBBG00000020108) #22	ENSBBBG00000020114 #23	ENSBBBG00000020134 #25	ENSBBBG00000005083	TMCO3 (ENSBBBG00000020141) #26	TFDP1 (ENSBBBG00000020185) #27	ATP4B (ENSBBBG00000005069) #28	GRK1 (ENSBBBG00000020202) #29	ENSBBBG00000005064	RASA3 (ENSBBBG00000005457) #31	ENSBBBG00000020227	CDC16 (ENSBBBG00000005497) #32	ENSBBBG00000020356 #33	CHAMP1 (ENSBBBG00000020367) #34	ENSBBBG00000020377
Siberian musk deer	MODERN SPECIES	20	NAXD (ENSMMSG00000000267)	CARS2 (ENSMMSG00000000313)	ING1 (ENSMMSG00000000347) #7	ANKRD10 (ENSMMSG00000000364) #8	ARHGEF7 (ENSMMSG00000000431) #9	TEX29 (ENSMMSG00000000595) #10	SOX1 (ENSMMSG00000000612)	TUBGCP3 (ENSMMSG00000000631) #13	ATP11A (ENSMMSG00000000712) #14	MCF2L (ENSMMSG00000000897) #15	F7 (ENSMMSG00000001702) #16	F10 (ENSMMSG00000001746) #17	PROZ (ENSMMSG00000001768) #18	PCID2 (ENSMMSG00000001797) #19	CUL4A (ENSMMSG00000001881) #21	LAMP1 (ENSMMSG00000001901) #22	GRTP1 (ENSMMSG00000001912) #23	ENSMMSG00000001939 #25	ENSMMSG00000001954	TMCO3 (ENSMMSG00000001974) #26	TFDP1 (ENSMMSG00000002023) #27	ATP4B (ENSMMSG00000002052) #28	GRK1 (ENSMMSG00000002083) #29	TMEM255B (ENSMMSG00000002118)	GAS6 (ENSMMSG00000002167)	C13orf46 (ENSMMSG00000002198) #30	RASA3 (ENSMMSG00000002214) #31	ENSMMSG00000002243	CDC16 (ENSMMSG00000002276) #32	UPF3A (ENSMMSG00000002343) #33	CHAMP1 (ENSMMSG00000002373) #34
Yarkand deer	MODERN SPECIES	23									ATP11A (ENSCHYG00000018094) #14	MCF2L (ENSCHYG00000017459) #15	F7 (ENSCHYG00000017328) #16	F10 (ENSCHYG00000017255) #17	PROZ (ENSCHYG00000017202) #18	PCID2 (ENSCHYG00000017042) #19	CUL4A (ENSCHYG00000016945) #21	LAMP1 (ENSCHYG00000016867) #22	ENSCHYG00000016699 #23	ENSCHYG00000016675 #24	ENSCHYG00000016564 #25	ENSCHYG00000016510	TMCO3 (ENSCHYG00000016262) #26	TFDP1 (ENSCHYG00000016100) #27	ATP4B (ENSCHYG00000015990) #28	GRK1 (ENSCHYG00000015899) #29	ENSCHYG00000015786	GAS6 (ENSCHYG00000015362)	C13orf46 (ENSCHYG00000015209) #30	RASA3 (ENSCHYG00000014733) #31	ENSCHYG00000014685	CDC16 (ENSCHYG00000014460) #32	CHAMP1 (ENSCHYG00000014228) #34
Camelidae	ANCESTRAL SPECIES	14	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Arabian camel	MODERN SPECIES	5	ENSCDRG00005007189	ING1 (ENSCDRG00005007312) #7	ANKRD10 (ENSCDRG00005007334) #8	ARHGEF7 (ENSCDRG00005007390) #9	ENSCDRG00005007753 #10	TUBGCP3 (ENSCDRG00005007799) #13	ENSCDRG00005007975 #14	ENSCDRG00005008440 #14	ENSCDRG00005008484	MCF2L (ENSCDRG00005008530) #15	F7 (ENSCDRG00005009648) #16	F10 (ENSCDRG00005009751) #17	ENSCDRG00005009810 #18	PCID2 (ENSCDRG00005009867) #19	CUL4A (ENSCDRG00005010048) #21	LAMP1 (ENSCDRG00005010170) #22	ENSCDRG00005010814 #23	ENSCDRG00005010884 #24	ENSCDRG00005010905 #25	TMCO3 (ENSCDRG00005010983) #26	TFDP1 (ENSCDRG00005011177) #27	ATP4B (ENSCDRG00005011261) #28	GRK1 (ENSCDRG00005011378) #29	TMEM255B (ENSCDRG00005011459)	GAS6 (ENSCDRG00005011499)	C13orf46 (ENSCDRG00005011630) #30	ENSCDRG00005011723 #31	ENSCDRG00005011776	CDC16 (ENSCDRG00005011819) #32	UPF3A (ENSCDRG00005012082) #33	CHAMP1 (ENSCDRG00005012265) #34
Laurasiatheria_b	ANCESTRAL SPECIES	21	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32
Laurasiatheria_c	ANCESTRAL SPECIES	22	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Chiroptera	ANCESTRAL SPECIES	39	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Microchiroptera	ANCESTRAL SPECIES	40	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00940000169077	ENSGT00510000049560 #10	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1332												ENSMLUG00000027524 #17	PROZ (ENSMLUG00000026284) #18	ENSMLUG00000002542 #19	CUL4A (ENSMLUG00000002556) #21	ENSMLUG00000015113 #22	GRTP1 (ENSMLUG00000015120) #23	ENSMLUG00000015121 #25	DCUN1D2 (ENSMLUG00000008249)	TMCO3 (ENSMLUG00000012149) #26	TFDP1 (ENSMLUG00000012165) #27	ATP4B (ENSMLUG00000003617) #28	GRK1 (ENSMLUG00000028939) #29	TMEM255B (ENSMLUG00000007643)	GAS6 (ENSMLUG00000007593)	C13orf46 (ENSMLUG00000025384) #30	RASA3 (ENSMLUG00000008114) #31	CDC16 (ENSMLUG00000015888) #32	UPF3A (ENSMLUG00000015905) #33	CHAMP1 (ENSMLUG00000011032) #34
Microbat	MODERN SPECIES	1181	ENSMLUG00000011365	ETV2 (ENSMLUG00000011347)	RBM42 (ENSMLUG00000011334)	HAUS5 (ENSMLUG00000016158)	ENSMLUG00000023510	ATP4A (ENSMLUG00000016393)	TMEM147 (ENSMLUG00000016383)	ENSMLUG00000027122	SBSN (ENSMLUG00000017105)	DMKN (ENSMLUG00000016376)	KRTDAP (ENSMLUG00000016368)	FFAR2 (ENSMLUG00000012387)	ENSMLUG00000012400	FFAR1 (ENSMLUG00000027056)	CD22 (ENSMLUG00000011794)	ENSMLUG00000025953 #22	MAG (ENSMLUG00000024023)	HAMP (ENSMLUG00000006207)	USF2 (ENSMLUG00000028063)	LSR (ENSMLUG00000029908)	FAM187B (ENSMLUG00000011342)	ENSMLUG00000006444	FXYD7 (ENSMLUG00000006441)	FXYD1 (ENSMLUG00000006437)	LGI4 (ENSMLUG00000006431)	FXYD3 (ENSMLUG00000006421)
Greater horseshoe bat	MODERN SPECIES	22	ING1 (ENSRFEG00010009011) #7	ANKRD10 (ENSRFEG00010009097) #8	ARHGEF7 (ENSRFEG00010009215) #9	ENSRFEG00010009729	ENSRFEG00010009777 #10	ENSRFEG00010009816 #11	ENSRFEG00010009835 #12	TUBGCP3 (ENSRFEG00010009921) #13	ATP11A (ENSRFEG00010010044) #14	MCF2L (ENSRFEG00010010305) #15	F7 (ENSRFEG00010010605) #16	F10 (ENSRFEG00010010691) #17	PROZ (ENSRFEG00010010742) #18	PCID2 (ENSRFEG00010011124) #19	CUL4A (ENSRFEG00010011199) #21	LAMP1 (ENSRFEG00010011295) #22	GRTP1 (ENSRFEG00010011453) #23	ENSRFEG00010011517 #25	DCUN1D2 (ENSRFEG00010011582)	TMCO3 (ENSRFEG00010011735) #26	TFDP1 (ENSRFEG00010011835) #27	ATP4B (ENSRFEG00010011884) #28	GRK1 (ENSRFEG00010012010) #29	TMEM255B (ENSRFEG00010012116)	GAS6 (ENSRFEG00010012156)	ENSRFEG00010012181	C13orf46 (ENSRFEG00010012200) #30	RASA3 (ENSRFEG00010012338) #31	CFAP97D2 (ENSRFEG00010012393)	CDC16 (ENSRFEG00010012448) #32	UPF3A (ENSRFEG00010012600) #33
Megabat	MODERN SPECIES	3098							ENSPVAG00000009172	ATP11A (ENSPVAG00000009173) #14	MCF2L (ENSPVAG00000009175) #15	ENSPVAG00000009185	F7 (ENSPVAG00000009192) #16	F10 (ENSPVAG00000009195) #17	PROZ (ENSPVAG00000009196) #18	PCID2 (ENSPVAG00000009199) #19	CUL4A (ENSPVAG00000009202) #21	LAMP1 (ENSPVAG00000009205) #22
Equus	ANCESTRAL SPECIES	26	ENSGT00940000155401 #7	ENSGT00940000156564.o.a #8	ENSGT00940000168071	ENSGT00940000163452	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Donkey	MODERN SPECIES	2	ING1 (ENSEASG00005021941) #7	ANKRD10 (ENSEASG00005030463) #8	ENSEASG00005025664	ENSEASG00005021938	ARHGEF7 (ENSEASG00005021934) #9	TEX29 (ENSEASG00005034991) #10	ENSEASG00005021930 #11	TUBGCP3 (ENSEASG00005021926) #13	ATP11A (ENSEASG00005021923) #14	MCF2L (ENSEASG00005021918) #15	F7 (ENSEASG00005021916) #16	F10 (ENSEASG00005021915) #17	PROZ (ENSEASG00005033631) #18	PCID2 (ENSEASG00005021913) #19	CUL4A (ENSEASG00005021912) #21	LAMP1 (ENSEASG00005021911) #22	ENSEASG00005030226	GRTP1 (ENSEASG00005021910) #23	ENSEASG00005028233 #23	DCUN1D2 (ENSEASG00005021907)	TMCO3 (ENSEASG00005021905) #26	TFDP1 (ENSEASG00005021904) #27	ATP4B (ENSEASG00005021903) #28	GRK1 (ENSEASG00005021902) #29	TMEM255B (ENSEASG00005021901)	GAS6 (ENSEASG00005021899)	RASA3 (ENSEASG00005021892) #31	ENSEASG00005025824	CDC16 (ENSEASG00005021889) #32	ENSEASG00005028212 #33	ENSEASG00005021884
Horse	MODERN SPECIES	8	ANKRD10 (ENSECAG00000017363) #8	ENSECAG00000028452 #12	ARHGEF7 (ENSECAG00000019366) #9	ENSECAG00000032863	TEX29 (ENSECAG00000019679) #10	ENSECAG00000029259 #11	TUBGCP3 (ENSECAG00000019850) #13	ATP11A (ENSECAG00000014304) #14	MCF2L (ENSECAG00000016662) #15	F7 (ENSECAG00000004998) #16	F10 (ENSECAG00000015294) #17	PROZ (ENSECAG00000024697) #18	PCID2 (ENSECAG00000005087) #19	CUL4A (ENSECAG00000018984) #21	ENSECAG00000060077	LAMP1 (ENSECAG00000017618) #22	GRTP1 (ENSECAG00000023426) #23	ENSECAG00000033224 #24	DCUN1D2 (ENSECAG00000005413)	TMCO3 (ENSECAG00000009685) #26	TFDP1 (ENSECAG00000013054) #27	ATP4B (ENSECAG00000020199) #28	GRK1 (ENSECAG00000000815) #29	TMEM255B (ENSECAG00000031501)	GAS6 (ENSECAG00000000014)	RASA3 (ENSECAG00000014387) #31	ENSECAG00000038480	CDC16 (ENSECAG00000020620) #32	UPF3A (ENSECAG00000017141) #33	CHAMP1 (ENSECAG00000022061) #34
Carnivora	ANCESTRAL SPECIES	23	ENSGT01060000249379	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32
Felidae	ANCESTRAL SPECIES	23	ENSGT01060000249379	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Panthera	ANCESTRAL SPECIES	21	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT01060000249379	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT01030000236386	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
Tiger	MODERN SPECIES	55	RAB20 (ENSPTIG00000020834)	NAXD (ENSPTIG00000020711)	CARS2 (ENSPTIG00000020575)	ING1 (ENSPTIG00000020554) #7	ANKRD10 (ENSPTIG00000020457) #8	ARHGEF7 (ENSPTIG00000020158) #9	TEX29 (ENSPTIG00000020108) #10	ENSPTIG00000019920 #11	TUBGCP3 (ENSPTIG00000019880) #13	ATP11A (ENSPTIG00000019523) #14	MCF2L (ENSPTIG00000018406) #15	F7 (ENSPTIG00000018271) #16	F10 (ENSPTIG00000018260) #17	PCID2 (ENSPTIG00000017986) #19	CUL4A (ENSPTIG00000017679) #21	LAMP1 (ENSPTIG00000017543) #22	GRTP1 (ENSPTIG00000017519) #23	ENSPTIG00000017462 #23	ENSPTIG00000017378	TMCO3 (ENSPTIG00000017252) #26	TFDP1 (ENSPTIG00000017077) #27	ATP4B (ENSPTIG00000016958) #28	GRK1 (ENSPTIG00000016916) #29	ENSPTIG00000016900	ENSPTIG00000016882	GAS6 (ENSPTIG00000016865)	ENSPTIG00000016805 #30	RASA3 (ENSPTIG00000016547) #31	ENSPTIG00000016536	CDC16 (ENSPTIG00000015588) #32	ENSPTIG00000015511
Panthera_a	ANCESTRAL SPECIES	23	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT01060000249379	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33
lion	MODERN SPECIES	1	CARS2 (ENSPLOG00000004110)	ENSPLOG00000004104	ING1 (ENSPLOG00000004101) #7	ANKRD10 (ENSPLOG00000004093) #8	ARHGEF7 (ENSPLOG00000004037) #9	TEX29 (ENSPLOG00000003995) #10	SOX1 (ENSPLOG00000003988)	ENSPLOG00000003983	TUBGCP3 (ENSPLOG00000003950) #13	ATP11A (ENSPLOG00000003893) #14	MCF2L (ENSPLOG00000003725) #15	F7 (ENSPLOG00000003628) #16	F10 (ENSPLOG00000003474) #17	PCID2 (ENSPLOG00000003395) #19	CUL4A (ENSPLOG00000003364) #21	LAMP1 (ENSPLOG00000003345) #22	GRTP1 (ENSPLOG00000003325) #23	ENSPLOG00000003309 #23	ENSPLOG00000003294	TMCO3 (ENSPLOG00000003272) #26	TFDP1 (ENSPLOG00000003246) #27	ATP4B (ENSPLOG00000003229) #28	GRK1 (ENSPLOG00000003214) #29	TMEM255B (ENSPLOG00000003188)	GAS6 (ENSPLOG00000003099)	RASA3 (ENSPLOG00000003052) #31	CDC16 (ENSPLOG00000002978) #32	UPF3A (ENSPLOG00000002938) #33
leopard	MODERN SPECIES	10	RAB20 (ENSPPRG00000001136)	NAXD (ENSPPRG00000002441)	CARS2 (ENSPPRG00000003053)	ING1 (ENSPPRG00000003787) #7	ANKRD10 (ENSPPRG00000004351) #8	ARHGEF7 (ENSPPRG00000010349) #9	TEX29 (ENSPPRG00000010665) #10	SOX1 (ENSPPRG00000018932)	TUBGCP3 (ENSPPRG00000012189) #13	ATP11A (ENSPPRG00000021273) #14	MCF2L (ENSPPRG00000001812) #15	F7 (ENSPPRG00000003637) #16	F10 (ENSPPRG00000003960) #17	PCID2 (ENSPPRG00000005351) #19	CUL4A (ENSPPRG00000007172) #21	LAMP1 (ENSPPRG00000008168) #22	GRTP1 (ENSPPRG00000008634) #23	ENSPPRG00000009079 #23	ENSPPRG00000009210	TMCO3 (ENSPPRG00000010438) #26	TFDP1 (ENSPPRG00000011390) #27	ATP4B (ENSPPRG00000011679) #28	GRK1 (ENSPPRG00000011925) #29	ENSPPRG00000012455	GAS6 (ENSPPRG00000012687)	RASA3 (ENSPPRG00000013946) #31	ENSPPRG00000014572	CDC16 (ENSPPRG00000021528) #32	UPF3A (ENSPPRG00000025062) #33
Cat	MODERN SPECIES		ANKRD10 (ENSFCAG00000023512) #8	ENSFCAG00000050103	ARHGEF7 (ENSFCAG00000014533) #9	ENSFCAG00000049928	TEX29 (ENSFCAG00000031278) #10	ENSFCAG00000045942 #11	ENSFCAG00000049480 #12	TUBGCP3 (ENSFCAG00000003787) #13	ENSFCAG00000031875	ATP11A (ENSFCAG00000014241) #14	MCF2L (ENSFCAG00000014242) #15	F7 (ENSFCAG00000014243) #16	F10 (ENSFCAG00000014244) #17	PCID2 (ENSFCAG00000014245) #19	CUL4A (ENSFCAG00000014246) #21	LAMP1 (ENSFCAG00000014247) #22	GRTP1 (ENSFCAG00000014248) #23	ENSFCAG00000014249 #23	DCUN1D2 (ENSFCAG00000018528)	TMCO3 (ENSFCAG00000014250) #26	TFDP1 (ENSFCAG00000005399) #27	ATP4B (ENSFCAG00000005403) #28	GRK1 (ENSFCAG00000006899) #29	TMEM255B (ENSFCAG00000006900)	ENSFCAG00000049919	GAS6 (ENSFCAG00000006901)	CA1H13orf46 (ENSFCAG00000031102) #30	RASA3 (ENSFCAG00000003256) #31	ENSFCAG00000040167	CDC16 (ENSFCAG00000014600) #32	UPF3A (ENSFCAG00000014602) #33
Caniformia	ANCESTRAL SPECIES	24	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000168071	ENSGT00390000018090 #12	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093
Canidae	ANCESTRAL SPECIES	38	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905.p #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33
Canis_lupus	ANCESTRAL SPECIES	35	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00940000156564.p #8	ENSGT00940000168071	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905.p #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00940000157453	ENSGT00950000182895.a.a.a.a.b	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Dingo	MODERN SPECIES	337	ENSCAFG00020020168 #7	ENSCAFG00020020165	ANKRD10 (ENSCAFG00020020159) #8	ENSCAFG00020020154	ARHGEF7 (ENSCAFG00020020152) #9	TEX29 (ENSCAFG00020020147) #10	SOX1 (ENSCAFG00020020144)	ENSCAFG00020020143 #11	TUBGCP3 (ENSCAFG00020020036) #13	ATP11A (ENSCAFG00020019648) #14	MCF2L (ENSCAFG00020019596) #15	F7 (ENSCAFG00020019593) #16	F10 (ENSCAFG00020019535) #17	PCID2 (ENSCAFG00020019522) #19	CUL4A (ENSCAFG00020016099) #21	LAMP1 (ENSCAFG00020016036) #22	GRTP1 (ENSCAFG00020016030) #23	ENSCAFG00020016026 #23	DCUN1D2 (ENSCAFG00020015991)	ENSCAFG00020015988	TMCO3 (ENSCAFG00020015979) #26	TFDP1 (ENSCAFG00020015970) #27	ATP4B (ENSCAFG00020015967) #28	GRK1 (ENSCAFG00020015959) #29	ENSCAFG00020015947	GAS6 (ENSCAFG00020015941)	RASA3 (ENSCAFG00020014345) #31	ENSCAFG00020014305	CDC16 (ENSCAFG00020014295) #32	UPF3A (ENSCAFG00020014268) #33	CHAMP1 (ENSCAFG00020014265) #34
Dog	MODERN SPECIES	14	ANKRD10 (ENSCAFG00845021262) #8	ENSCAFG00845021374	ARHGEF7 (ENSCAFG00845021560) #9	ENSCAFG00845022261	ENSCAFG00845022282 #10	ENSCAFG00845022459 #12	TUBGCP3 (ENSCAFG00845022572) #13	ATP11A (ENSCAFG00845023079) #14	ENSCAFG00845023704	ENSCAFG00845023759	MCF2L (ENSCAFG00845023822) #15	F7 (ENSCAFG00845024066) #16	F10 (ENSCAFG00845024167) #17	PCID2 (ENSCAFG00845024265) #19	ENSCAFG00845024793 #21	LAMP1 (ENSCAFG00845026590) #22	ENSCAFG00845026659 #21	GRTP1 (ENSCAFG00845026708) #23	ENSCAFG00845026745 #24	ADPRHL1 (ENSCAFG00845026762) #23	ENSCAFG00845026806	TMCO3 (ENSCAFG00845026864) #26	TFDP1 (ENSCAFG00845027014) #27	ATP4B (ENSCAFG00845027108) #28	GRK1 (ENSCAFG00845027167) #29	TMEM255B (ENSCAFG00845027262)	GAS6 (ENSCAFG00845027414)	RASA3 (ENSCAFG00845027619) #31	ENSCAFG00845027769	CDC16 (ENSCAFG00845027881) #32	ENSCAFG00845028100
Red fox	MODERN SPECIES	73	ING1 (ENSVVUG00000019927) #7	ENSVVUG00000019924	ANKRD10 (ENSVVUG00000019920) #8	ARHGEF7 (ENSVVUG00000019891) #9	ENSVVUG00000019887 #10	ENSVVUG00000019866 #11	ENSVVUG00000019850	ENSVVUG00000019845	TUBGCP3 (ENSVVUG00000019837) #13	ATP11A (ENSVVUG00000019821) #14	MCF2L (ENSVVUG00000019769) #15	F7 (ENSVVUG00000019755) #16	F10 (ENSVVUG00000019750) #17	PCID2 (ENSVVUG00000019740) #19	CUL4A (ENSVVUG00000013815) #21	LAMP1 (ENSVVUG00000013673) #22	GRTP1 (ENSVVUG00000013662) #23	ENSVVUG00000013658 #25	DCUN1D2 (ENSVVUG00000013633)	ENSVVUG00000013630	TMCO3 (ENSVVUG00000013609) #26	TFDP1 (ENSVVUG00000013603) #27	ATP4B (ENSVVUG00000013595) #28	GRK1 (ENSVVUG00000013586) #29	CEBPG (ENSVVUG00000013584)	ENSVVUG00000013582	GAS6 (ENSVVUG00000013580)	ENSVVUG00000013577 #30	RASA3 (ENSVVUG00000013569) #31	ENSVVUG00000013568	CDC16 (ENSVVUG00000013555) #32
Caniformia_b	ANCESTRAL SPECIES	26	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00640000092035 #11	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093
Mustelinae	ANCESTRAL SPECIES	75	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
American mink	MODERN SPECIES	162	RAB20 (ENSNVIG00000001482)	NAXD (ENSNVIG00000001444)	CARS2 (ENSNVIG00000001408)	ING1 (ENSNVIG00000001401) #7	ANKRD10 (ENSNVIG00000001389) #8	ARHGEF7 (ENSNVIG00000001079) #9	ENSNVIG00000001041 #10	ENSNVIG00000001034 #11	TUBGCP3 (ENSNVIG00000000986) #13	ATP11A (ENSNVIG00000000966) #14	MCF2L (ENSNVIG00000000805) #15	F7 (ENSNVIG00000000766) #16	F10 (ENSNVIG00000000297) #17	PCID2 (ENSNVIG00000000184) #19	CUL4A (ENSNVIG00000000178) #21	LAMP1 (ENSNVIG00000000172) #22	GRTP1 (ENSNVIG00000000160) #23	ENSNVIG00000000143 #23	ENSNVIG00000000138	TMCO3 (ENSNVIG00000000089) #26	TFDP1 (ENSNVIG00000000051) #27	ATP4B (ENSNVIG00000000044) #28	GRK1 (ENSNVIG00000020952) #29	TMEM255B (ENSNVIG00000020936)	GAS6 (ENSNVIG00000020915)	ENSNVIG00000020906	RASA3 (ENSNVIG00000020857) #31	ENSNVIG00000020840	CDC16 (ENSNVIG00000020685) #32	UPF3A (ENSNVIG00000020636) #33	CHAMP1 (ENSNVIG00000020624) #34
Ferret	MODERN SPECIES	179	ING1 (ENSMPUG00000010625) #7	ANKRD10 (ENSMPUG00000010620) #8	NAXD (ENSMPUG00000010617)	ARHGEF7 (ENSMPUG00000010609) #9	TEX29 (ENSMPUG00000010598) #10	ENSMPUG00000010594	ENSMPUG00000010590	TUBGCP3 (ENSMPUG00000010469) #13	ATP11A (ENSMPUG00000010457) #14	ENSMPUG00000018671	MCF2L (ENSMPUG00000010436) #15	F7 (ENSMPUG00000010383) #16	F10 (ENSMPUG00000010244) #17	PCID2 (ENSMPUG00000010226) #19	CUL4A (ENSMPUG00000009958) #21	LAMP1 (ENSMPUG00000009948) #22	ENSMPUG00000009861 #23	DCUN1D2 (ENSMPUG00000009807)	TMCO3 (ENSMPUG00000009799) #26	TFDP1 (ENSMPUG00000009700) #27	ATP4B (ENSMPUG00000009485) #28	GRK1 (ENSMPUG00000009251) #29	TMEM255B (ENSMPUG00000009216)	GAS6 (ENSMPUG00000009204)	ENSMPUG00000009196	RASA3 (ENSMPUG00000009172) #31	ENSMPUG00000009166	CDC16 (ENSMPUG00000009151) #32	UPF3A (ENSMPUG00000009139) #33	CHAMP1 (ENSMPUG00000018670) #34
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00950000182899.B.a.e #22
Giant Panda	DUPLICATION
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	545																ENSAMEG00000023689 #22
Giant Panda	MODERN SPECIES	749																ENSAMEG00000026820 #22
Giant Panda	MODERN SPECIES	2065																ENSAMEG00000030038 #22
Ursidae	ANCESTRAL SPECIES	27	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b.q	ENSGT00940000155401 #7	ENSGT00940000156564.p #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00390000018090 #12	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.f #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214889	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33
Ursus	ANCESTRAL SPECIES	75	ENSGT00940000157678	ENSGT00940000157234	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b.q	ENSGT00940000155401 #7	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.f #22	ENSGT00940000154927 #23	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Polar bear	MODERN SPECIES	118	ENSUMAG00000022186	NAXD (ENSUMAG00000022182)	CARS2 (ENSUMAG00000022150)	ING1 (ENSUMAG00000022142) #7	ARHGEF7 (ENSUMAG00000022136) #9	ENSUMAG00000022121	ENSUMAG00000022115 #11	TUBGCP3 (ENSUMAG00000022102) #13	ATP11A (ENSUMAG00000021457) #14	ENSUMAG00000021340 #15	MCF2L (ENSUMAG00000021336) #15	F7 (ENSUMAG00000021332) #16	F10 (ENSUMAG00000021272) #17	PCID2 (ENSUMAG00000021251) #19	CUL4A (ENSUMAG00000020946) #21	LAMP1 (ENSUMAG00000020905) #22	GRTP1 (ENSUMAG00000020903) #23	ENSUMAG00000020901 #23	DCUN1D2 (ENSUMAG00000020896)	TMCO3 (ENSUMAG00000020888) #26	TFDP1 (ENSUMAG00000020802) #27	ATP4B (ENSUMAG00000020776) #28	GRK1 (ENSUMAG00000020762) #29	ENSUMAG00000020760	GAS6 (ENSUMAG00000020749)	ENSUMAG00000020742 #30	RASA3 (ENSUMAG00000020735) #31	CDC16 (ENSUMAG00000020318) #32	ENSUMAG00000020211 #33	CHAMP1 (ENSUMAG00000020207) #34
American black bear	MODERN SPECIES	1717																LAMP1 (ENSUAMG00000006526) #22	GRTP1 (ENSUAMG00000006530) #23	ENSUAMG00000006532 #23	DCUN1D2 (ENSUAMG00000006537)	TMCO3 (ENSUAMG00000006539) #26	TFDP1 (ENSUAMG00000006541) #27	ATP4B (ENSUAMG00000006542) #28
Giant Panda	MODERN SPECIES	17	NAXD (ENSAMEG00000017031)	CARS2 (ENSAMEG00000017043)	ING1 (ENSAMEG00000017057) #7	ANKRD10 (ENSAMEG00000017061) #8	ENSAMEG00000023553 #12	ARHGEF7 (ENSAMEG00000017068) #9	TEX29 (ENSAMEG00000017101) #10	ENSAMEG00000024022 #12	TUBGCP3 (ENSAMEG00000001007) #13	ATP11A (ENSAMEG00000001333) #14	MCF2L (ENSAMEG00000010304) #15	F7 (ENSAMEG00000010289) #16	F10 (ENSAMEG00000010248) #17	PCID2 (ENSAMEG00000010216) #19	CUL4A (ENSAMEG00000010104) #21	LAMP1 (ENSAMEG00000004770) #22	GRTP1 (ENSAMEG00000004752) #23	ENSAMEG00000004712 #25	DCUN1D2 (ENSAMEG00000026282)	TMCO3 (ENSAMEG00000004683) #26	TFDP1 (ENSAMEG00000004645) #27	ATP4B (ENSAMEG00000004610) #28	GRK1 (ENSAMEG00000004552) #29	TMEM255B (ENSAMEG00000004534)	GAS6 (ENSAMEG00000004441)	RASA3 (ENSAMEG00000004351) #31	ENSAMEG00000031438	CDC16 (ENSAMEG00000004301) #32	ENSAMEG00000004259 #33	ENSAMEG00000019446 #34
Atlantogenata	ANCESTRAL SPECIES	39	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00940000169167	ENSGT00730000111351 #34
Xenarthra	ANCESTRAL SPECIES	178						ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29
Sloth	MODERN SPECIES	6841																LAMP1 (ENSCHOG00000005626) #22	GRTP1 (ENSCHOG00000005637) #23
Armadillo	MODERN SPECIES	780			ENSDNOG00000042197	SOX1 (ENSDNOG00000023758)	ENSDNOG00000046814 #11	ENSDNOG00000033024	TUBGCP3 (ENSDNOG00000033260) #13	ATP11A (ENSDNOG00000004534) #14	ENSDNOG00000047086	MCF2L (ENSDNOG00000003552) #15	F7 (ENSDNOG00000006958) #16	F10 (ENSDNOG00000001808) #17	PROZ (ENSDNOG00000047224) #18	PCID2 (ENSDNOG00000045988) #19	CUL4A (ENSDNOG00000024001) #21	LAMP1 (ENSDNOG00000018277) #22	GRTP1 (ENSDNOG00000017542) #23	ENSDNOG00000033668 #25	DCUN1D2 (ENSDNOG00000049603)	ENSDNOG00000045332 #26	ENSDNOG00000033275	ENSDNOG00000049735 #27	ENSDNOG00000037401	ATP4B (ENSDNOG00000014552) #28	GRK1 (ENSDNOG00000003990) #29	ENSDNOG00000048244
Afrotheria	ANCESTRAL SPECIES	102	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23
Afrotheria_a	ANCESTRAL SPECIES	105	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23
Elephant	MODERN SPECIES	294	COL4A2 (ENSLAFG00000009012)	RAB20 (ENSLAFG00000009022)	NAXD (ENSLAFG00000018000)	ING1 (ENSLAFG00000032747) #7	ANKRD10 (ENSLAFG00000009565) #8	ARHGEF7 (ENSLAFG00000001580) #9	TEX29 (ENSLAFG00000022594) #10	TUBGCP3 (ENSLAFG00000017665) #13	ATP11A (ENSLAFG00000008843) #14	MCF2L (ENSLAFG00000005963) #15	F7 (ENSLAFG00000005968) #16	F10 (ENSLAFG00000031458) #17	PROZ (ENSLAFG00000030196) #18	PCID2 (ENSLAFG00000011123) #19	CUL4A (ENSLAFG00000011128) #21	LAMP1 (ENSLAFG00000011133) #22	GRTP1 (ENSLAFG00000011140) #23
Hyrax	MODERN SPECIES	9658																LAMP1 (ENSPCAG00000011079) #22
Tenrec	MODERN SPECIES	7635																ENSETEG00000004225 #22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00390000016480 #30	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT01030000235093
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00510000049560 #10	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00860000135888	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33
Diprotodontia	ANCESTRAL SPECIES	49	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Diprotodontia_a	ANCESTRAL SPECIES	47	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT01000000214655	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1020	ENSVURG00010005256	ENSVURG00010005263	ENSVURG00010005287	ENSVURG00010005460 #7	ENSVURG00010005474 #8	ENSVURG00010005518 #9	ENSVURG00010005562	ENSVURG00010005607 #13	ENSVURG00010005662 #14	ENSVURG00010005780 #15	ENSVURG00010005892 #16	ENSVURG00010005904 #17	ENSVURG00010005918 #18	ENSVURG00010005929 #19	ENSVURG00010005946 #21	ENSVURG00010006000 #22	ENSVURG00010006026 #23	ENSVURG00010006050 #23	ENSVURG00010006138	ENSVURG00010006153 #26	ENSVURG00010006175 #27	ENSVURG00010006193 #28	ENSVURG00010006220 #29	ENSVURG00010006252	ENSVURG00010006303	ENSVURG00010006386 #31	ENSVURG00010006422	ENSVURG00010006428	ENSVURG00010006439 #32	ENSVURG00010006470	ENSVURG00010006476 #33
Common wonbat	MODERN SPECIES	1020	ENSVURG00010022506	ENSVURG00010022510	ENSVURG00010022526	ENSVURG00010022573 #7	ENSVURG00010022576 #8	ENSVURG00010022584 #9	ENSVURG00010022598	ENSVURG00010022604 #13	ENSVURG00010000177 #14	ENSVURG00010000304 #15	ENSVURG00010000439 #16	ENSVURG00010000459 #17	ENSVURG00010000484 #18	ENSVURG00010000504 #19	ENSVURG00010000548 #21	ENSVURG00010000561 #22	ENSVURG00010000573 #23	ENSVURG00010000600 #23	ENSVURG00010000711	ENSVURG00010000730 #26	ENSVURG00010000833 #27	ENSVURG00010000857 #28	ENSVURG00010000887 #29	ENSVURG00010000982	ENSVURG00010001010	ENSVURG00010001234 #31	ENSVURG00010001302	ENSVURG00010001304	ENSVURG00010001340 #32	ENSVURG00010001494	ENSVURG00010001499 #33
koala	MODERN SPECIES	158	ENSPCIG00000010364 #10	ENSPCIG00000014967	TUBGCP3 (ENSPCIG00000019456) #13	ENSPCIG00000026974	ATP11A (ENSPCIG00000015971) #14	ENSPCIG00000019443 #15	MCF2L (ENSPCIG00000019435) #15	F7 (ENSPCIG00000012955) #16	F10 (ENSPCIG00000035934) #17	PROZ (ENSPCIG00000030529) #18	PCID2 (ENSPCIG00000030530) #19	CUL4A (ENSPCIG00000030551) #21	ENSPCIG00000030553	ENSPCIG00000030555	ENSPCIG00000030557	LAMP1 (ENSPCIG00000016552) #22	GRTP1 (ENSPCIG00000016553) #23	ENSPCIG00000036504 #25	DCUN1D2 (ENSPCIG00000016558)	TMCO3 (ENSPCIG00000015615) #26	TFDP1 (ENSPCIG00000015609) #27	ATP4B (ENSPCIG00000015605) #28	GRK1 (ENSPCIG00000015597) #29	TMEM255B (ENSPCIG00000011724)	GAS6 (ENSPCIG00000011722)	ENSPCIG00000032352	ENSPCIG00000022035 #30	RASA3 (ENSPCIG00000017443) #31	ENSPCIG00000012510	CDC16 (ENSPCIG00000019661) #32	ENSPCIG00000019590 #33
Wallaby	MODERN SPECIES	9232																LAMP1 (ENSMEUG00000003360) #22	GRTP1 (ENSMEUG00000003368) #23
Tasmanian devil	MODERN SPECIES	2	ING1 (ENSSHAG00000031807) #7	ANKRD10 (ENSSHAG00000000011) #8	ARHGEF7 (ENSSHAG00000010398) #9	ENSSHAG00000028950 #10	SOX1 (ENSSHAG00000022549)	ENSSHAG00000032007 #11	TUBGCP3 (ENSSHAG00000018311) #13	ATP11A (ENSSHAG00000017823) #14	ENSSHAG00000030369	MCF2L (ENSSHAG00000017277) #15	F7 (ENSSHAG00000017231) #16	F10 (ENSSHAG00000017128) #17	PROZ (ENSSHAG00000017001) #18	PCID2 (ENSSHAG00000016909) #19	CUL4A (ENSSHAG00000016779) #21	LAMP1 (ENSSHAG00000016646) #22	GRTP1 (ENSSHAG00000025498) #23	ENSSHAG00000029927 #24	ENSSHAG00000016185 #25	DCUN1D2 (ENSSHAG00000016097)	TMCO3 (ENSSHAG00000015782) #26	TFDP1 (ENSSHAG00000015145) #27	ATP4B (ENSSHAG00000015082) #28	GRK1 (ENSSHAG00000015004) #29	TMEM255B (ENSSHAG00000023182)	GAS6 (ENSSHAG00000014196)	RASA3 (ENSSHAG00000011276) #31	ENSSHAG00000023328	CDC16 (ENSSHAG00000010088) #32	UPF3A (ENSSHAG00000009895) #33	ENSSHAG00000029169 #34
Opossum	MODERN SPECIES	6	ANKRD10 (ENSMODG00000046223) #8	ENSMODG00000041582	ENSMODG00000050777	ARHGEF7 (ENSMODG00000004481) #9	ENSMODG00000029047	ENSMODG00000004254	TUBGCP3 (ENSMODG00000004240) #13	ATP11A (ENSMODG00000004191) #14	MCF2L (ENSMODG00000004096) #15	F7 (ENSMODG00000004015) #16	F10 (ENSMODG00000003988) #17	PROZ (ENSMODG00000039812) #18	ENSMODG00000028569	PCID2 (ENSMODG00000003945) #19	CUL4A (ENSMODG00000003915) #21	LAMP1 (ENSMODG00000003894) #22	GRTP1 (ENSMODG00000003875) #23	ENSMODG00000003846 #25	DCUN1D2 (ENSMODG00000003808)	TMCO3 (ENSMODG00000003789) #26	TFDP1 (ENSMODG00000003737) #27	ATP4B (ENSMODG00000003720) #28	GRK1 (ENSMODG00000003710) #29	TMEM255B (ENSMODG00000039770)	GAS6 (ENSMODG00000003633)	ENSMODG00000027827	ENSMODG00000027706 #30	RASA3 (ENSMODG00000003579) #31	ENSMODG00000042942	CDC16 (ENSMODG00000003192) #32	UPF3A (ENSMODG00000003159) #33
Platypus	MODERN SPECIES	12	TXNDC9 (ENSOANG00000005821)	ENSOANG00000022457	RASA3 (ENSOANG00000039021) #31	ENSOANG00000039015 #30	GAS6 (ENSOANG00000015645)	ENSOANG00000015644	TUBGCP3 (ENSOANG00000015642) #13	ATP11A (ENSOANG00000015641) #14	MCF2L (ENSOANG00000015640) #15	F7 (ENSOANG00000040107) #16	F10 (ENSOANG00000015639) #17	ENSOANG00000015638 #18	PCID2 (ENSOANG00000015637) #19	ENSOANG00000015636 #21	ENSOANG00000050494 #21	LAMP1 (ENSOANG00000015635) #22	GRTP1 (ENSOANG00000015634) #23	ENSOANG00000015632 #25	DCUN1D2 (ENSOANG00000043642)	TMCO3 (ENSOANG00000015628) #26	TFDP1 (ENSOANG00000015627) #27	GRK1 (ENSOANG00000015626) #29	ARHGEF7 (ENSOANG00000015625) #9	ANKRD10 (ENSOANG00000047091) #8	ING1 (ENSOANG00000041904) #7	CARS2 (ENSOANG00000015623)	ENSOANG00000015622	ENSOANG00000044597	RAB20 (ENSOANG00000015621)	ENSOANG00000015616	ENSOANG00000044308
Sauria	ANCESTRAL SPECIES	2	ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00940000169167
Archelosauria	ANCESTRAL SPECIES		ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00940000169167
Archosauria	ANCESTRAL SPECIES	2	ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00940000169167
Aves	ANCESTRAL SPECIES		ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Neognathae	ANCESTRAL SPECIES	1	ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00990000209490	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00390000000917	ENSGT00940000161024	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.lb.a #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00990000209490	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238
Anatidae	ANCESTRAL SPECIES	32					ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.lb.a #17	ENSGT00940000157694.lb.b #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00990000209490	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238
Pink-footed goose	MODERN SPECIES	89	NAXD (ENSABRG00000007027)	RAB20 (ENSABRG00000007047)	COL4A2 (ENSABRG00000007169)	COL4A1 (ENSABRG00000007408)	IRS2 (ENSABRG00000007510)	MYO16 (ENSABRG00000000818)	TUBGCP3 (ENSABRG00000001109) #13	ATP11A (ENSABRG00000001228) #14	MCF2L (ENSABRG00000007123) #15	F7 (ENSABRG00000010949) #16	ENSABRG00000010952 #17	ENSABRG00000010962 #17	PROZ (ENSABRG00000010965) #18	PCID2 (ENSABRG00000011022) #19	CUL4A (ENSABRG00000011313) #21	LAMP1 (ENSABRG00000013022) #22	GRTP1 (ENSABRG00000013042) #23	ENSABRG00000013074 #25	DCUN1D2 (ENSABRG00000013123)	TMCO3 (ENSABRG00000013129) #26	TFDP1 (ENSABRG00000013136) #27	ATP4B (ENSABRG00000013139) #28	TMEM255B (ENSABRG00000013143)	GAS6 (ENSABRG00000013167)	RASA3 (ENSABRG00000013177) #31	CDC16 (ENSABRG00000013187) #32	UPF3A (ENSABRG00000013198) #33	CHAMP1 (ENSABRG00000013212) #34	SOWAHC (ENSABRG00000013222)	SEPTIN10 (ENSABRG00000013282)	SH3RF3 (ENSABRG00000014132)
Duck	MODERN SPECIES		ENSAPLG00000025346	ENSAPLG00000030115	ENSAPLG00000021889	IRS2 (ENSAPLG00000021237)	MYO16 (ENSAPLG00000007605)	TUBGCP3 (ENSAPLG00000009382) #13	ATP11A (ENSAPLG00000008836) #14	MCF2L (ENSAPLG00000016231) #15	GRTP1 (ENSAPLG00000015320) #23	F7 (ENSAPLG00000003743) #16	ENSAPLG00000002945 #17	ENSAPLG00000021900 #17	PROZ (ENSAPLG00000002834) #18	PCID2 (ENSAPLG00000002544) #19	CUL4A (ENSAPLG00000001201) #21	LAMP1 (ENSAPLG00000015580) #22	ADPRHL1 (ENSAPLG00000021170) #25	DCUN1D2 (ENSAPLG00000021253)	TMCO3 (ENSAPLG00000014778) #26	TFDP1 (ENSAPLG00000014438) #27	ATP4B (ENSAPLG00000014125) #28	TMEM255B (ENSAPLG00000014031)	GAS6 (ENSAPLG00000013696)	RASA3 (ENSAPLG00000012988) #31	ENSAPLG00000030370	CDC16 (ENSAPLG00000012294) #32	UPF3A (ENSAPLG00000012944) #33	CHAMP1 (ENSAPLG00000029506) #34	SOWAHC (ENSAPLG00000022641)	SEPTIN10 (ENSAPLG00000012998)	SH3RF3 (ENSAPLG00000019711)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000161024	ENSGT01030000238084	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.lb.a #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405
Japanese quail	MODERN SPECIES		RAB20 (ENSCJPG00005015930)	ENSCJPG00005015926	ENSCJPG00005015925	ENSCJPG00005015924	COL4A1 (ENSCJPG00005015920)	IRS2 (ENSCJPG00005015917)	MYO16 (ENSCJPG00005015895)	TUBGCP3 (ENSCJPG00005015884) #13	ATP11A (ENSCJPG00005015706) #14	MCF2L (ENSCJPG00005014431) #15	F7 (ENSCJPG00005014430) #16	F10 (ENSCJPG00005014429) #17	PROZ (ENSCJPG00005014428) #18	PCID2 (ENSCJPG00005014427) #19	CUL4A (ENSCJPG00005013683) #21	LAMP1 (ENSCJPG00005013682) #22	GRTP1 (ENSCJPG00005013681) #23	ADPRHL1 (ENSCJPG00005013665) #25	DCUN1D2 (ENSCJPG00005013664)	TMCO3 (ENSCJPG00005013645) #26	TFDP1 (ENSCJPG00005013541) #27	ATP4B (ENSCJPG00005013540) #28	TMEM255B (ENSCJPG00005013537)	GAS6 (ENSCJPG00005013533)	RASA3 (ENSCJPG00005013532) #31	CDC16 (ENSCJPG00005013264) #32	UPF3A (ENSCJPG00005013262) #33	CHAMP1 (ENSCJPG00005013261) #34	SOWAHC (ENSCJPG00005013260)	SEPTIN10 (ENSCJPG00005013259)	SH3RF3 (ENSCJPG00005013258)
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000161024	ENSGT01030000238084	ENSGT00940000157234	ENSGT00940000157678	ENSGT00940000161407	ENSGT00940000158920	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.lb.a #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405
Chicken	MODERN SPECIES		NAXD (ENSGALG00010014362)	RAB20 (ENSGALG00010014355)	ENSGALG00010014349	COL4A2 (ENSGALG00010014324)	COL4A1 (ENSGALG00010014128)	IRS2 (ENSGALG00010013322)	MYO16 (ENSGALG00010013310)	TUBGCP3 (ENSGALG00010013293) #13	ATP11A (ENSGALG00010013263) #14	MCF2L (ENSGALG00010014903) #15	F7 (ENSGALG00010014789) #16	F10 (ENSGALG00010014766) #17	PROZ (ENSGALG00010014742) #18	PCID2 (ENSGALG00010014703) #19	CUL4A (ENSGALG00010014687) #21	LAMP1 (ENSGALG00010014654) #22	GRTP1 (ENSGALG00010014617) #23	ENSGALG00010014488 #24	DCUN1D2 (ENSGALG00010014517)	TMCO3 (ENSGALG00010014469) #26	TFDP1 (ENSGALG00010016472) #27	ATP4B (ENSGALG00010014454) #28	TMEM255B (ENSGALG00010014414)	GAS6 (ENSGALG00010014399)	RASA3 (ENSGALG00010014217) #31	CDC16 (ENSGALG00010014001) #32	UPF3A (ENSGALG00010013940) #33	CHAMP1 (ENSGALG00010013398) #34	SOWAHC (ENSGALG00010013388)	SEPT14 (ENSGALG00010013383)	SH3RF3 (ENSGALG00010013378)
Turkey	MODERN SPECIES		RAB20 (ENSMGAG00000014864)	ENSMGAG00000022291	COL4A2 (ENSMGAG00000014863)	COL4A1 (ENSMGAG00000014861)	MYO16 (ENSMGAG00000014859)	TUBGCP3 (ENSMGAG00000014858) #13	ATP11A (ENSMGAG00000014857) #14	ENSMGAG00000022516	MCF2L (ENSMGAG00000014856) #15	F7 (ENSMGAG00000014854) #16	F10 (ENSMGAG00000017978) #17	ENSMGAG00000018754 #17	PROZ (ENSMGAG00000014853) #18	PCID2 (ENSMGAG00000014852) #19	CUL4A (ENSMGAG00000014851) #21	LAMP1 (ENSMGAG00000014850) #22	GRTP1 (ENSMGAG00000014849) #23	ENSMGAG00000020004 #24	ENSMGAG00000014848 #23	DCUN1D2 (ENSMGAG00000014847)	TMCO3 (ENSMGAG00000014846) #26	TFDP1 (ENSMGAG00000014844) #27	ATP4B (ENSMGAG00000014843) #28	TMEM255B (ENSMGAG00000014842)	GAS6 (ENSMGAG00000014841)	RASA3 (ENSMGAG00000014839) #31	CDC16 (ENSMGAG00000014838) #32	UPF3A (ENSMGAG00000014837) #33	CHAMP1 (ENSMGAG00000019956) #34	SOWAHC (ENSMGAG00000020228)	SEPTIN10 (ENSMGAG00000014835)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00990000209490	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT01060000249379	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00990000209490	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Golden eagle	MODERN SPECIES	15	ENSACCG00020015256	RAB20 (ENSACCG00020015268)	NAXD (ENSACCG00020015324)	CARS2 (ENSACCG00020015359)	ING1 (ENSACCG00020015383) #7	ENSACCG00020015388	ANKRD10 (ENSACCG00020015409) #8	ARHGEF7 (ENSACCG00020015453) #9	TUBGCP3 (ENSACCG00020015546) #13	ATP11A (ENSACCG00020016228) #14	MCF2L (ENSACCG00020016512) #15	F10 (ENSACCG00020016548) #17	PROZ (ENSACCG00020016556) #18	PCID2 (ENSACCG00020016560) #19	CUL4A (ENSACCG00020016563) #21	LAMP1 (ENSACCG00020016570) #22	GRTP1 (ENSACCG00020016575) #23	ADPRHL1 (ENSACCG00020016581) #25	DCUN1D2 (ENSACCG00020016585)	TMCO3 (ENSACCG00020016588) #26	TFDP1 (ENSACCG00020016592) #27	ATP4B (ENSACCG00020016597) #28	TMEM255B (ENSACCG00020016600)	GAS6 (ENSACCG00020016605)	RASA3 (ENSACCG00020016609) #31	ENSACCG00020011534	CDC16 (ENSACCG00020011557) #32	ENSACCG00020011584	ENSACCG00020011603 #33	CHAMP1 (ENSACCG00020011630) #34	SOWAHC (ENSACCG00020011734)
Kakapo	MODERN SPECIES	11	ENSSHBG00005008037	RAB20 (ENSSHBG00005008012)	NAXD (ENSSHBG00005007995)	CARS2 (ENSSHBG00005007924)	ING1 (ENSSHBG00005007901) #7	ANKRD10 (ENSSHBG00005007891) #8	ARHGEF7 (ENSSHBG00005007870) #9	TUBGCP3 (ENSSHBG00005007732) #13	ATP11A (ENSSHBG00005007439) #14	MCF2L (ENSSHBG00005007204) #15	F7 (ENSSHBG00005007144) #16	F10 (ENSSHBG00005007112) #17	PROZ (ENSSHBG00005007080) #18	PCID2 (ENSSHBG00005007047) #19	CUL4A (ENSSHBG00005004987) #21	LAMP1 (ENSSHBG00005004843) #22	GRTP1 (ENSSHBG00005004833) #23	ENSSHBG00005004819 #25	DCUN1D2 (ENSSHBG00005004812)	TMCO3 (ENSSHBG00005004795) #26	TFDP1 (ENSSHBG00005004780) #27	ATP4B (ENSSHBG00005004773) #28	TMEM255B (ENSSHBG00005004767)	GAS6 (ENSSHBG00005004761)	RASA3 (ENSSHBG00005004607) #31	CDC16 (ENSSHBG00005004545) #32	UPF3A (ENSSHBG00005004535) #33	CHAMP1 (ENSSHBG00005004530) #34	SOWAHC (ENSSHBG00005004521)	SEPTIN10 (ENSSHBG00005004492)	SH3RF3 (ENSSHBG00005004481)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT01030000235093	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00980000198897	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.kb #17	ENSGT00940000157694.jb #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.kb #17	ENSGT00940000157694.jb #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238	ENSGT00940000160405
Zebra finch	MODERN SPECIES		RAB20 (ENSTGUG00000008797)	NAXD (ENSTGUG00000008803)	CARS2 (ENSTGUG00000008828)	ING1 (ENSTGUG00000008851) #7	ANKRD10 (ENSTGUG00000008852) #8	ARHGEF7 (ENSTGUG00000008859) #9	ENSTGUG00000022113 #11	TUBGCP3 (ENSTGUG00000008919) #13	ATP11A (ENSTGUG00000008975) #14	MCF2L (ENSTGUG00000009021) #15	F7 (ENSTGUG00000026248) #16	F10 (ENSTGUG00000009098) #17	PROZ (ENSTGUG00000009129) #18	PCID2 (ENSTGUG00000009135) #19	CUL4A (ENSTGUG00000009155) #21	LAMP1 (ENSTGUG00000009185) #22	GRTP1 (ENSTGUG00000009208) #23	ADPRHL1 (ENSTGUG00000009227) #25	DCUN1D2 (ENSTGUG00000009237)	TMCO3 (ENSTGUG00000009257) #26	TFDP1 (ENSTGUG00000009272) #27	ATP4B (ENSTGUG00000009299) #28	TMEM255B (ENSTGUG00000009312)	GAS6 (ENSTGUG00000009321)	RASA3 (ENSTGUG00000009356) #31	CDC16 (ENSTGUG00000009440) #32	UPF3A (ENSTGUG00000009493) #33	CHAMP1 (ENSTGUG00000020637) #34	SOWAHC (ENSTGUG00000029468)	SEPTIN10 (ENSTGUG00000009529)	SH3RF3 (ENSTGUG00000009533)
Common canary	MODERN SPECIES	4	NAXD (ENSSCAG00000004845)	CARS2 (ENSSCAG00000004733)	ING1 (ENSSCAG00000004700) #7	ANKRD10 (ENSSCAG00000004697) #8	ARHGEF7 (ENSSCAG00000004684) #9	ENSSCAG00000004668 #11	ENSSCAG00000004663	TUBGCP3 (ENSSCAG00000004639) #13	ATP11A (ENSSCAG00000004614) #14	MCF2L (ENSSCAG00000004538) #15	F7 (ENSSCAG00000004513) #16	ENSSCAG00000004508 #17	PROZ (ENSSCAG00000004499) #18	PCID2 (ENSSCAG00000004491) #19	CUL4A (ENSSCAG00000004482) #21	LAMP1 (ENSSCAG00000004473) #22	GRTP1 (ENSSCAG00000004464) #23	ENSSCAG00000004450 #25	DCUN1D2 (ENSSCAG00000004446)	TMCO3 (ENSSCAG00000004437) #26	TFDP1 (ENSSCAG00000004434) #27	ATP4B (ENSSCAG00000004430) #28	TMEM255B (ENSSCAG00000004419)	GAS6 (ENSSCAG00000004388)	RASA3 (ENSSCAG00000004378) #31	CDC16 (ENSSCAG00000004352) #32	UPF3A (ENSSCAG00000004347) #33	CHAMP1 (ENSSCAG00000004345) #34	SEPTIN10 (ENSSCAG00000004339)	SH3RF3 (ENSSCAG00000004328)	EDAR (ENSSCAG00000004303)
Medium ground finch	MODERN SPECIES	18	RAB20 (ENSGFOG00000003600)	NAXD (ENSGFOG00000003617)	CARS2 (ENSGFOG00000003646)	ING1 (ENSGFOG00000003803) #7	ANKRD10 (ENSGFOG00000003812) #8	ARHGEF7 (ENSGFOG00000003831) #9	TUBGCP3 (ENSGFOG00000003879) #13	ATP11A (ENSGFOG00000003931) #14	MCF2L (ENSGFOG00000004166) #15	F7 (ENSGFOG00000004252) #16	ENSGFOG00000004269 #17	ENSGFOG00000004295 #17	PROZ (ENSGFOG00000004310) #18	PCID2 (ENSGFOG00000004324) #19	CUL4A (ENSGFOG00000004332) #21	LAMP1 (ENSGFOG00000004344) #22	GRTP1 (ENSGFOG00000004361) #23	ENSGFOG00000004367 #25	DCUN1D2 (ENSGFOG00000004377)	TMCO3 (ENSGFOG00000004383) #26	TFDP1 (ENSGFOG00000004395) #27	ATP4B (ENSGFOG00000004414) #28	TMEM255B (ENSGFOG00000004446)	GAS6 (ENSGFOG00000004457)	RASA3 (ENSGFOG00000005159) #31	CDC16 (ENSGFOG00000005174) #32	UPF3A (ENSGFOG00000005199) #33	CHAMP1 (ENSGFOG00000005234) #34	SEPTIN10 (ENSGFOG00000005236)	SH3RF3 (ENSGFOG00000005262)	EDAR (ENSGFOG00000005287)
Flycatcher	MODERN SPECIES		ENSFALG00000025079	RAB20 (ENSFALG00000027339)	NAXD (ENSFALG00000004401)	CARS2 (ENSFALG00000004392)	ING1 (ENSFALG00000004387) #7	ANKRD10 (ENSFALG00000004386) #8	ARHGEF7 (ENSFALG00000004384) #9	TUBGCP3 (ENSFALG00000004381) #13	ATP11A (ENSFALG00000004378) #14	MCF2L (ENSFALG00000004376) #15	F7 (ENSFALG00000004361) #16	F10 (ENSFALG00000004357) #17	PROZ (ENSFALG00000003195) #18	PCID2 (ENSFALG00000003216) #19	CUL4A (ENSFALG00000003226) #21	LAMP1 (ENSFALG00000027496) #22	GRTP1 (ENSFALG00000003266) #23	ENSFALG00000023900 #24	ENSFALG00000003283 #25	DCUN1D2 (ENSFALG00000024235)	TMCO3 (ENSFALG00000003317) #26	TFDP1 (ENSFALG00000003322) #27	ATP4B (ENSFALG00000003337) #28	TMEM255B (ENSFALG00000003357)	GAS6 (ENSFALG00000003371)	RASA3 (ENSFALG00000003402) #31	CDC16 (ENSFALG00000003438) #32	UPF3A (ENSFALG00000028444) #33	CHAMP1 (ENSFALG00000014953) #34	SEPTIN10 (ENSFALG00000003471)	SH3RF3 (ENSFALG00000003486)
Great tit	MODERN SPECIES		RAB20 (ENSPMJG00000011566)	NAXD (ENSPMJG00000011569)	CARS2 (ENSPMJG00000011570)	ING1 (ENSPMJG00000011571) #7	ANKRD10 (ENSPMJG00000011573) #8	ARHGEF7 (ENSPMJG00000011576) #9	TUBGCP3 (ENSPMJG00000011580) #13	ATP11A (ENSPMJG00000011581) #14	MCF2L (ENSPMJG00000011582) #15	F7 (ENSPMJG00000011589) #16	F10 (ENSPMJG00000011590) #17	ENSPMJG00000011591	PROZ (ENSPMJG00000011592) #18	PCID2 (ENSPMJG00000011593) #19	CUL4A (ENSPMJG00000011594) #21	LAMP1 (ENSPMJG00000011595) #22	GRTP1 (ENSPMJG00000011596) #23	ENSPMJG00000011597 #23	DCUN1D2 (ENSPMJG00000011598)	TMCO3 (ENSPMJG00000011599) #26	TFDP1 (ENSPMJG00000011600) #27	ATP4B (ENSPMJG00000011601) #28	TMEM255B (ENSPMJG00000011602)	GAS6 (ENSPMJG00000011603)	RASA3 (ENSPMJG00000011605) #31	CDC16 (ENSPMJG00000011606) #32	ENSPMJG00000011607	ENSPMJG00000011608 #33	CHAMP1 (ENSPMJG00000011610) #34	SOWAHC (ENSPMJG00000011611)	SEPTIN10 (ENSPMJG00000011612)
African ostrich	MODERN SPECIES	287								TUBGCP3 (ENSSCUG00000001235) #13	ATP11A (ENSSCUG00000001257) #14	MCF2L (ENSSCUG00000001286) #15	F7 (ENSSCUG00000001296) #16	F10 (ENSSCUG00000001297) #17	PROZ (ENSSCUG00000001298) #18	PCID2 (ENSSCUG00000001300) #19	CUL4A (ENSSCUG00000001312) #21	LAMP1 (ENSSCUG00000001331) #22	GRTP1 (ENSSCUG00000001336) #23	ENSSCUG00000001343 #23	DCUN1D2 (ENSSCUG00000001345)	TMCO3 (ENSSCUG00000001348) #26	TFDP1 (ENSSCUG00000001354) #27	ATP4B (ENSSCUG00000001357) #28	TMEM255B (ENSSCUG00000001360)	GAS6 (ENSSCUG00000001365)	RASA3 (ENSSCUG00000001373) #31	ENSSCUG00000001378	CDC16 (ENSSCUG00000001391) #32	ENSSCUG00000001400 #33	ENSSCUG00000001401 #33	ENSSCUG00000001404	CHAMP1 (ENSSCUG00000001405) #34
Australian saltwater crocodile	MODERN SPECIES	27	ING1 (ENSCPRG00005016473) #7	ANKRD10 (ENSCPRG00005016466) #8	ARHGEF7 (ENSCPRG00005016448) #9	ENSCPRG00005016444	ENSCPRG00005016438 #11	TUBGCP3 (ENSCPRG00005016423) #13	ATP11A (ENSCPRG00005016415) #14	ENSCPRG00005016402	MCF2L (ENSCPRG00005016380) #15	F7 (ENSCPRG00005016369) #16	F10 (ENSCPRG00005016344) #17	PROZ (ENSCPRG00005016332) #18	PCID2 (ENSCPRG00005016327) #19	CUL4A (ENSCPRG00005016321) #21	ENSCPRG00005016319	LAMP1 (ENSCPRG00005016313) #22	GRTP1 (ENSCPRG00005016310) #23	DCUN1D2 (ENSCPRG00005016301)	TMCO3 (ENSCPRG00005016295) #26	TFDP1 (ENSCPRG00005016290) #27	ATP4B (ENSCPRG00005016275) #28	TMEM255B (ENSCPRG00005016252)	GAS6 (ENSCPRG00005016206)	RASA3 (ENSCPRG00005016183) #31	CDC16 (ENSCPRG00005016180) #32	UPF3A (ENSCPRG00005016177) #33	ENSCPRG00005016173	CHAMP1 (ENSCPRG00005016169) #34	SOWAHC (ENSCPRG00005016166)	SEPTIN10 (ENSCPRG00005015747)	SH3RF3 (ENSCPRG00005015635)
Cryptodira	ANCESTRAL SPECIES		ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00990000208345	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT01030000235093	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000155401 #7	ENSGT00940000156564.c #8	ENSGT00940000155360.B #9	ENSGT00640000092035 #11	ENSGT00990000208345	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.nb.a #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453.l	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT01030000235093	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Emydidae	ANCESTRAL SPECIES	30	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564.c #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.nb.a #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453.l	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238
Three-toed box turtle	MODERN SPECIES	4	RAB20 (ENSTMTG00000000557)	NAXD (ENSTMTG00000000572)	CARS2 (ENSTMTG00000000584)	ING1 (ENSTMTG00000000603) #7	ANKRD10 (ENSTMTG00000000612) #8	ARHGEF7 (ENSTMTG00000000637) #9	SOX1 (ENSTMTG00000000684)	TUBGCP3 (ENSTMTG00000000709) #13	ATP11A (ENSTMTG00000000821) #14	MCF2L (ENSTMTG00000001311) #15	F7 (ENSTMTG00000001381) #16	F10 (ENSTMTG00000001390) #17	PROZ (ENSTMTG00000001402) #18	PCID2 (ENSTMTG00000001432) #19	CUL4A (ENSTMTG00000001550) #21	LAMP1 (ENSTMTG00000001573) #22	GRTP1 (ENSTMTG00000001583) #23	ENSTMTG00000001595 #25	DCUN1D2 (ENSTMTG00000001625)	TMCO3 (ENSTMTG00000001638) #26	TFDP1 (ENSTMTG00000001653) #27	ATP4B (ENSTMTG00000001663) #28	TMEM255B (ENSTMTG00000001682)	GAS6 (ENSTMTG00000001704)	RASA3 (ENSTMTG00000001744) #31	CDC16 (ENSTMTG00000001761) #32	UPF3A (ENSTMTG00000001772) #33	CHAMP1 (ENSTMTG00000001780) #34	SOWAHC (ENSTMTG00000001791)	SEPTIN10 (ENSTMTG00000001808)	ENSTMTG00000001825
painted turtle	MODERN SPECIES	841						ARHGEF7 (ENSCPBG00000019002) #9	ENSCPBG00000019015 #11	TUBGCP3 (ENSCPBG00000019025) #13	ATP11A (ENSCPBG00000019044) #14	MCF2L (ENSCPBG00000019479) #15	F7 (ENSCPBG00000019548) #16	F10 (ENSCPBG00000019558) #17	ENSCPBG00000019564 #17	PCID2 (ENSCPBG00000019573) #19	CUL4A (ENSCPBG00000019794) #21	LAMP1 (ENSCPBG00000019798) #22	GRTP1 (ENSCPBG00000019801) #23	ADPRHL1 (ENSCPBG00000019806) #25	DCUN1D2 (ENSCPBG00000019811)
Testudinidae	ANCESTRAL SPECIES		ENSGT00940000156564.c #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694.nb.a #17	ENSGT00940000157694.nb.b #17	ENSGT00960000187127.d	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453.l	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT01030000235093	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Abingdon island giant tortoise	MODERN SPECIES	575									F7 (ENSCABG00000013944) #16	ENSCABG00000013913 #17	ENSCABG00000013909 #17	ENSCABG00000013908	PROZ (ENSCABG00000013906) #18	PCID2 (ENSCABG00000013901) #19	CUL4A (ENSCABG00000013897) #21	LAMP1 (ENSCABG00000013895) #22	GRTP1 (ENSCABG00000013894) #23	ENSCABG00000013891	ENSCABG00000013889 #25	DCUN1D2 (ENSCABG00000013885)	TMCO3 (ENSCABG00000013818) #26	TFDP1 (ENSCABG00000013814) #27	ATP4B (ENSCABG00000013813) #28	TMEM255B (ENSCABG00000013812)	GAS6 (ENSCABG00000013809)	ENSCABG00000013807	RASA3 (ENSCABG00000013804) #31	ENSCABG00000013802	CDC16 (ENSCABG00000013378) #32	UPF3A (ENSCABG00000013372) #33	CHAMP1 (ENSCABG00000013371) #34
Goode s thornscrub tortoise	MODERN SPECIES		ARHGEF7 (ENSGEVG00005010513) #9	ENSGEVG00005012703	SOX1 (ENSGEVG00005012731)	TUBGCP3 (ENSGEVG00005012766) #13	ATP11A (ENSGEVG00005013095) #14	ENSGEVG00005014940	ENSGEVG00005014970 #15	ENSGEVG00005015013	MCF2L (ENSGEVG00005015055) #15	F7 (ENSGEVG00005015262) #16	ENSGEVG00005015355 #17	ENSGEVG00005015385 #17	PROZ (ENSGEVG00005015531) #18	PCID2 (ENSGEVG00005015583) #19	CUL4A (ENSGEVG00005015607) #21	LAMP1 (ENSGEVG00005015630) #22	GRTP1 (ENSGEVG00005015677) #23	ENSGEVG00005015913 #25	DCUN1D2 (ENSGEVG00005016074)	TMCO3 (ENSGEVG00005016102) #26	TFDP1 (ENSGEVG00005016191) #27	ATP4B (ENSGEVG00005016229) #28	TMEM255B (ENSGEVG00005016359)	GAS6 (ENSGEVG00005016458)	RASA3 (ENSGEVG00005016699) #31	ENSGEVG00005016735	CDC16 (ENSGEVG00005016901) #32	UPF3A (ENSGEVG00005017802) #33	ENSGEVG00005017863	CHAMP1 (ENSGEVG00005017879) #34	SOWAHC (ENSGEVG00005017888)
Chinese turtle	MODERN SPECIES	2234					ENSPSIG00000008384 #9	SOX1 (ENSPSIG00000008370)	TUBGCP3 (ENSPSIG00000005606) #13	ATP11A (ENSPSIG00000017100) #14	MCF2L (ENSPSIG00000016899) #15	F7 (ENSPSIG00000016364) #16	F10 (ENSPSIG00000015394) #17	PROZ (ENSPSIG00000014986) #18	PCID2 (ENSPSIG00000014349) #19	ENSPSIG00000014177 #21	ENSPSIG00000014174 #21	LAMP1 (ENSPSIG00000013720) #22	GRTP1 (ENSPSIG00000013333) #23	ENSPSIG00000013014 #25	DCUN1D2 (ENSPSIG00000012906)	TMCO3 (ENSPSIG00000012855) #26	ENSPSIG00000012426
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00940000169167	ENSGT00730000111351 #34
tuatara	MODERN SPECIES	108												F10 (ENSSPUG00000002422) #17	ENSSPUG00000002359 #18	PCID2 (ENSSPUG00000002345) #19	CUL4A (ENSSPUG00000002327) #21	LAMP1 (ENSSPUG00000002311) #22	GRTP1 (ENSSPUG00000002276) #23	ENSSPUG00000002252 #25	ENSSPUG00000002244	ENSSPUG00000002239	TMCO3 (ENSSPUG00000002229) #26	TFDP1 (ENSSPUG00000002220) #27	ATP4B (ENSSPUG00000002201) #28	TMEM255B (ENSSPUG00000002174)	GAS6 (ENSSPUG00000002141)	RASA3 (ENSSPUG00000002101) #31	CDC16 (ENSSPUG00000002062) #32	ENSSPUG00000002033	CHAMP1 (ENSSPUG00000002031) #34	SEPTIN10 (ENSSPUG00000001930)	SH3RF3 (ENSSPUG00000001878)
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00940000169167	ENSGT00730000111351 #34
Laterata	ANCESTRAL SPECIES		ENSGT00390000006347.b	ENSGT01060000249379	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00950000186102 #24	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00940000169167	ENSGT00730000111351 #34
Common wall lizard	MODERN SPECIES	12	ENSPMRG00000013944	ING1 (ENSPMRG00000013940) #7	ENSPMRG00000013938	ANKRD10 (ENSPMRG00000013931) #8	ARHGEF7 (ENSPMRG00000013843) #9	ENSPMRG00000013815	SOX1 (ENSPMRG00000013814)	TUBGCP3 (ENSPMRG00000013736) #13	ATP11A (ENSPMRG00000012988) #14	MCF2L (ENSPMRG00000012700) #15	F7 (ENSPMRG00000012544) #16	F10 (ENSPMRG00000012514) #17	PROZ (ENSPMRG00000012509) #18	PCID2 (ENSPMRG00000012504) #19	CUL4A (ENSPMRG00000012497) #21	LAMP1 (ENSPMRG00000012490) #22	GRTP1 (ENSPMRG00000012444) #23	ENSPMRG00000012431 #24	ENSPMRG00000012425 #25	ENSPMRG00000012420	ENSPMRG00000012403	TMCO3 (ENSPMRG00000012392) #26	ENSPMRG00000012388	TFDP1 (ENSPMRG00000012383) #27	ATP4B (ENSPMRG00000012379) #28	TMEM255B (ENSPMRG00000012361)	GAS6 (ENSPMRG00000012342)	RASA3 (ENSPMRG00000012188) #31	CDC16 (ENSPMRG00000012083) #32	ENSPMRG00000012374 #33	ENSPMRG00000012370 #33
Argentine black and white tegu	MODERN SPECIES		ING1 (ENSSMRG00000000521) #7	ANKRD10 (ENSSMRG00000000523) #8	ARHGEF7 (ENSSMRG00000000549) #9	SOX1 (ENSSMRG00000000638)	ENSSMRG00000000666	TUBGCP3 (ENSSMRG00000000680) #13	ATP11A (ENSSMRG00000000729) #14	MCF2L (ENSSMRG00000000926) #15	ENSSMRG00000001180	ENSSMRG00000001184	F7 (ENSSMRG00000001186) #16	F10 (ENSSMRG00000001190) #17	PROZ (ENSSMRG00000001195) #18	PCID2 (ENSSMRG00000001198) #19	CUL4A (ENSSMRG00000001203) #21	LAMP1 (ENSSMRG00000001211) #22	GRTP1 (ENSSMRG00000001307) #23	ENSSMRG00000001309 #25	DCUN1D2 (ENSSMRG00000001331)	TMCO3 (ENSSMRG00000001340) #26	TFDP1 (ENSSMRG00000001345) #27	ATP4B (ENSSMRG00000001393) #28	TMEM255B (ENSSMRG00000001405)	GAS6 (ENSSMRG00000001425)	RASA3 (ENSSMRG00000001472) #31	ENSSMRG00000001510	CDC16 (ENSSMRG00000001513) #32	UPF3A (ENSSMRG00000001544) #33	ENSSMRG00000001617	CHAMP1 (ENSSMRG00000001622) #34	SOWAHC (ENSSMRG00000001624)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00940000169167	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Lizard	MODERN SPECIES	2	NAXD (ENSACAG00000006067)	CARS2 (ENSACAG00000006129)	ING1 (ENSACAG00000006183) #7	ANKRD10 (ENSACAG00000006186) #8	ENSACAG00000040941	ARHGEF7 (ENSACAG00000006216) #9	TUBGCP3 (ENSACAG00000006362) #13	ATP11A (ENSACAG00000006490) #14	MCF2L (ENSACAG00000006709) #15	F7 (ENSACAG00000024935) #16	F10 (ENSACAG00000006917) #17	ENSACAG00000040426	PROZ (ENSACAG00000000179) #18	PCID2 (ENSACAG00000000188) #19	CUL4A (ENSACAG00000000212) #21	LAMP1 (ENSACAG00000000264) #22	GRTP1 (ENSACAG00000000265) #23	ENSACAG00000036970	ENSACAG00000043871	ENSACAG00000000274 #23	DCUN1D2 (ENSACAG00000000309)	TMCO3 (ENSACAG00000000367) #26	TFDP1 (ENSACAG00000000428) #27	ATP4B (ENSACAG00000039908) #28	TMEM255B (ENSACAG00000000417)	GAS6 (ENSACAG00000000689)	RASA3 (ENSACAG00000000864) #31	ENSACAG00000043917	ENSACAG00000043158	CFAP97D2 (ENSACAG00000038248)	ENSACAG00000039995
Elapidae	ANCESTRAL SPECIES	13	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT00640000092035 #11	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00940000169167	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Elapidae_a	ANCESTRAL SPECIES	16	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00990000208345	ENSGT00940000162479	ENSGT01000000221099	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00990000210881	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00940000169167	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b
Acanthophiinae	ANCESTRAL SPECIES	21													ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000160889	ENSGT00940000161271	ENSGT00940000157953 #31	ENSGT00940000164099.a.a	ENSGT00950000182950.B #32	ENSGT00390000017146.b #33	ENSGT00730000111351 #34	ENSGT00950000183003.a.a.b	ENSGT00940000155238.o
Mainland tiger snake	MODERN SPECIES	17														ENSNSUG00000018583 #18	PCID2 (ENSNSUG00000018584) #19	LAMP1 (ENSNSUG00000018587) #22	GRTP1 (ENSNSUG00000018588) #23	ENSNSUG00000018589 #25	DCUN1D2 (ENSNSUG00000018590)	TMCO3 (ENSNSUG00000018591) #26	TFDP1 (ENSNSUG00000018592) #27	ATP4B (ENSNSUG00000018593) #28	TMEM255B (ENSNSUG00000018594)	GAS6 (ENSNSUG00000000025)	RASA3 (ENSNSUG00000000041) #31	ENSNSUG00000000064	CDC16 (ENSNSUG00000000094) #32	UPF3A (ENSNSUG00000001182) #33	CHAMP1 (ENSNSUG00000001183) #34	SH3RF3 (ENSNSUG00000001196)	SEPTIN10 (ENSNSUG00000001220)
Eastern brown snake	MODERN SPECIES	35													F10 (ENSPTXG00000001925) #17	PROZ (ENSPTXG00000001923) #18	PCID2 (ENSPTXG00000001922) #19	LAMP1 (ENSPTXG00000001919) #22	GRTP1 (ENSPTXG00000001918) #23	ENSPTXG00000001917 #25	DCUN1D2 (ENSPTXG00000001915)	TMCO3 (ENSPTXG00000001912) #26	TFDP1 (ENSPTXG00000001911) #27	ATP4B (ENSPTXG00000001909) #28	TMEM255B (ENSPTXG00000001908)	ENSPTXG00000001905	RASA3 (ENSPTXG00000000919) #31	CDC16 (ENSPTXG00000000875) #32	UPF3A (ENSPTXG00000000553) #33	CHAMP1 (ENSPTXG00000000512) #34	SOWAHC (ENSPTXG00000000506)	SEPTIN10 (ENSPTXG00000000492)	SH3RF3 (ENSPTXG00000000477)
Blue-lipped sea krait	MODERN SPECIES	9014																ENSLLTG00000004077 #22	GRTP1 (ENSLLTG00000004093) #23
Indian cobra	MODERN SPECIES	5	ING1 (ENSNNAG00000018139) #7	ANKRD10 (ENSNNAG00000018132) #8	ARHGEF7 (ENSNNAG00000018027) #9	ENSNNAG00000018004	ENSNNAG00000018002	SOX1 (ENSNNAG00000017999)	ENSNNAG00000017995 #11	TUBGCP3 (ENSNNAG00000017989) #13	ATP11A (ENSNNAG00000017956) #14	ENSNNAG00000017948	ENSNNAG00000017945	MCF2L (ENSNNAG00000017774) #15	F7 (ENSNNAG00000017712) #16	F10 (ENSNNAG00000017693) #17	PCID2 (ENSNNAG00000017682) #19	LAMP1 (ENSNNAG00000017675) #22	GRTP1 (ENSNNAG00000017671) #23	ENSNNAG00000017664 #25	DCUN1D2 (ENSNNAG00000017656)	TMCO3 (ENSNNAG00000017650) #26	TFDP1 (ENSNNAG00000017646) #27	ATP4B (ENSNNAG00000017638) #28	TMEM255B (ENSNNAG00000017632)	GAS6 (ENSNNAG00000017610)	RASA3 (ENSNNAG00000017298) #31	CDC16 (ENSNNAG00000017085) #32	UPF3A (ENSNNAG00000017035) #33	CHAMP1 (ENSNNAG00000017015) #34	SOWAHC (ENSNNAG00000017002)	SEPTIN10 (ENSNNAG00000016727)	SH3RF3 (ENSNNAG00000016650)
Anura	ANCESTRAL SPECIES	3	ENSGT00940000161024	ENSGT00390000000917	ENSGT00390000006347.b	ENSGT00940000155401 #7	ENSGT00940000156564 #8	ENSGT00940000155360.B #9	ENSGT00940000162479	ENSGT00940000157872 #13	ENSGT00940000157849 #14	ENSGT00940000157874 #15	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT01070000257274	ENSGT00940000154287.a	ENSGT00940000154659.a	ENSGT00950000182972.a.a.a.a.b	ENSGT00390000001397	ENSGT00940000161625	ENSGT00390000014995	ENSGT00940000158722
Frog	MODERN SPECIES	2	ENSXETG00000048517	arhgef7 (ENSXETG00000008213) #9	sox1 (ENSXETG00000047619)	ENSXETG00000040514	ENSXETG00000047946	tubgcp3 (ENSXETG00000001903) #13	ENSXETG00000037130	atp11a (ENSXETG00000001905) #14	mcf2l (ENSXETG00000001920) #15	f7 (ENSXETG00000001932) #16	f10 (ENSXETG00000025492) #17	proz (ENSXETG00000025493) #18	pcid2 (ENSXETG00000001931) #19	ENSXETG00000041289	cul4a (ENSXETG00000001957) #21	ppara (ENSXETG00000001958) #22	grtp1 (ENSXETG00000001972) #23	dcun1d2 (ENSXETG00000016823) #25	tmco3 (ENSXETG00000017774) #26	ENSXETG00000045864	tfdp1 (ENSXETG00000017776) #27	atp4b (ENSXETG00000017778) #28	grk1 (ENSXETG00000017782) #29	ENSXETG00000048965	ENSXETG00000046211	shox (ENSXETG00000035986)	ENSXETG00000042464	ppp2r3b (ENSXETG00000004122)	ENSXETG00000004123	gtpbp6 (ENSXETG00000004125)	plcxd1 (ENSXETG00000004126)
Leishan spiny toad	MODERN SPECIES	5	ANKRD10 (ENSLLEG00000005188) #8	ARHGEF7 (ENSLLEG00000004921) #9	ENSLLEG00000004866	ENSLLEG00000004857	ENSLLEG00000004850	SOX1 (ENSLLEG00000004847)	TUBGCP3 (ENSLLEG00000004736) #13	ATP11A (ENSLLEG00000004602) #14	ENSLLEG00000004565	MCF2L (ENSLLEG00000004429) #15	F7 (ENSLLEG00000004361) #16	F10 (ENSLLEG00000004352) #17	PROZ (ENSLLEG00000004342) #18	PCID2 (ENSLLEG00000004308) #19	ENSLLEG00000004280 #21	LAMP1 (ENSLLEG00000004271) #22	GRTP1 (ENSLLEG00000004268) #23	ENSLLEG00000004263 #25	ENSLLEG00000004262	TMCO3 (ENSLLEG00000004249) #26	ENSLLEG00000004243	TFDP1 (ENSLLEG00000004231) #27	ATP4B (ENSLLEG00000004222) #28	GRK1 (ENSLLEG00000004216) #29	ENSLLEG00000004210	ENSLLEG00000004204	SHOX (ENSLLEG00000004198)	ENSLLEG00000004196	PPP2R3B (ENSLLEG00000004190)	ENSLLEG00000004062	GTPBP6 (ENSLLEG00000003983)
Coelacanth	MODERN SPECIES	651												F10 (ENSLACG00000001156) #17	PROZ (ENSLACG00000003205) #18	PCID2 (ENSLACG00000003545) #19	CUL4A (ENSLACG00000004198) #21	LAMP1 (ENSLACG00000005998) #22	ENSLACG00000007224 #23	DCUN1D2 (ENSLACG00000009664)	TMCO3 (ENSLACG00000010362) #26	TFDP1 (ENSLACG00000011116) #27	ATP4B (ENSLACG00000012034) #28	GRK1 (ENSLACG00000012291) #29	ENSLACG00000013481	ENSLACG00000013498	TMEM255B (ENSLACG00000013997)	ENSLACG00000014211	PROS1 (ENSLACG00000014640)	RASA3 (ENSLACG00000015061) #31
Actinopterygii	ANCESTRAL SPECIES	32	ENSGT00390000018895.a	ENSGT00950000183058.A.b	ENSGT00950000183058.A.a	ENSGT00940000160248	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000157694 #17	ENSGT00940000154505.A #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953 #31	ENSGT00390000014623	ENSGT00940000156596	ENSGT00940000159229	ENSGT00940000163631	ENSGT00510000049619
Neopterygii	ANCESTRAL SPECIES	15	ENSGT00940000160248	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953 #31	ENSGT00390000014623	ENSGT00940000156596	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Osteoglossocephalai	ANCESTRAL SPECIES	129	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00940000157453.s	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652 #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596	ENSGT00940000159229
Osteoglossiformes	ANCESTRAL SPECIES	88	ENSGT00950000183058.A.b	ENSGT00950000183058.A.a.e	ENSGT00940000160248.a	ENSGT00940000154851.A.a	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a #22	ENSGT00940000154927 #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.m #27	ENSGT00940000159927 #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596	ENSGT00940000163631	ENSGT00390000009400
P. kingsleyae	MODERN SPECIES	107	ildr1a (ENSPKIG00000010032)	ildr2 (ENSPKIG00000009993)	ENSPKIG00000009968	ENSPKIG00000009925	POU2F1 (ENSPKIG00000009872)	CD247 (ENSPKIG00000009835)	creg1 (ENSPKIG00000009816)	ENSPKIG00000009795	f7l (ENSPKIG00000009762) #16	f7 (ENSPKIG00000009741) ##16	f7i (ENSPKIG00000009720) ##16	f10 (ENSPKIG00000009705) #17	ENSPKIG00000009688 #17	pcid2 (ENSPKIG00000009646) #19	cul4a (ENSPKIG00000009599) #21	lamp1b (ENSPKIG00000009576) #22	grtp1b (ENSPKIG00000009522) #23	dcun1d2b (ENSPKIG00000009475)	TMCO3 (ENSPKIG00000009448) #26	TFDP1 (ENSPKIG00000009395) #27	grk1a (ENSPKIG00000009360) #29	ENSPKIG00000009335	ENSPKIG00000009307	pros1 (ENSPKIG00000009276)	RASA3 (ENSPKIG00000009237) #31	ENSPKIG00000009204 #31	TPP2 (ENSPKIG00000009054)	mettl21cb (ENSPKIG00000008979)	ENSPKIG00000008946	blzf1 (ENSPKIG00000008931)	tmem47 (ENSPKIG00000008919)
Asian bonytongue	MODERN SPECIES	3	ildr1a (ENSSFOG00015008468)	ildr2 (ENSSFOG00015008440)	ENSSFOG00015008380	ENSSFOG00015030130	pou2f1b (ENSSFOG00015008295)	CD247 (ENSSFOG00015008233)	creg1 (ENSSFOG00015027964)	ENSSFOG00015008204	f7l (ENSSFOG00015008184) #16	f7 (ENSSFOG00015008174) ##16	f7i (ENSSFOG00015008166) ##16	f10 (ENSSFOG00015008132) #17	prozb (ENSSFOG00015008112) #18	pcid2 (ENSSFOG00015008025) #19	cul4a (ENSSFOG00015007952) #21	lamp1b (ENSSFOG00015007939) #22	grtp1b (ENSSFOG00015007908) #23	adprhl1 (ENSSFOG00015007880) #25	dcun1d2b (ENSSFOG00015032196)	TMCO3 (ENSSFOG00015007797) #26	TFDP1 (ENSSFOG00015007745) #27	grk1a (ENSSFOG00015007717) #29	ENSSFOG00015007660	gas6 (ENSSFOG00015007634)	pros1 (ENSSFOG00015007604)	RASA3 (ENSSFOG00015007579) #31	TPP2 (ENSSFOG00015007447)	mettl21cb (ENSSFOG00015007422)	ENSSFOG00015007413	blzf1 (ENSSFOG00015025115)	ENSSFOG00015007356
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	109	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00530000066677	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631
Otomorpha	ANCESTRAL SPECIES	104	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631
Otophysi	ANCESTRAL SPECIES	60	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c.b
Characiphysae	ANCESTRAL SPECIES	64	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c.b	ENSGT00940000156596.c.a
Channel catfish	MODERN SPECIES	18	ENSIPUG00000011515	ENSIPUG00000011490	dusp27 (ENSIPUG00000011465)	pou2f1 (ENSIPUG00000011393)	cd247 (ENSIPUG00000011307)	creg1 (ENSIPUG00000011270)	ENSIPUG00000011231	ENSIPUG00000011157	F7 (ENSIPUG00000011104) #16	f7 (ENSIPUG00000011097) ##16	f7i (ENSIPUG00000011007) ##16	F10 (ENSIPUG00000010966) #17	prozb (ENSIPUG00000010955) #18	pcid2 (ENSIPUG00000010821) #19	cul4a (ENSIPUG00000010780) #21	lamp1 (ENSIPUG00000010750) #22	grtp1a (ENSIPUG00000010730) #23	adprhl1 (ENSIPUG00000010721) #25	dcun1d2b (ENSIPUG00000010673)	Tmco3 (ENSIPUG00000010628) #26	tfdp1b (ENSIPUG00000010569) #27	ATP4B (ENSIPUG00000010519) #28	Grk1 (ENSIPUG00000010489) #29	ENSIPUG00000010474	cenpe (ENSIPUG00000010340)	ENSIPUG00000010319	pros1 (ENSIPUG00000010305)	gas6 (ENSIPUG00000010280)	rasa3 (ENSIPUG00000010252) #31	tpp2 (ENSIPUG00000010120)	ENSIPUG00000010061
Characiphysae_b	ANCESTRAL SPECIES	45	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c.b	ENSGT00940000156596.c.a
Characoidei	ANCESTRAL SPECIES	42	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c.b	ENSGT00940000159229
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000016020	dusp27 (ENSAMXG00000033251)	ENSAMXG00000037806	CD247 (ENSAMXG00000030068)	creg1 (ENSAMXG00000039279)	ENSAMXG00000039576	ENSAMXG00000016092	f7l (ENSAMXG00000033258) #16	f7 (ENSAMXG00000031178) ##16	f7i (ENSAMXG00000039589) ##16	f10 (ENSAMXG00000016120) #17	prozb (ENSAMXG00000016125) #18	pcid2 (ENSAMXG00000016135) #19	cul4a (ENSAMXG00000016143) #21	ENSAMXG00000031398	LAMP1 (ENSAMXG00000034169) #22	grtp1a (ENSAMXG00000037615) #23	adprhl1 (ENSAMXG00000038082) #25	ENSAMXG00000040104	dcun1d2b (ENSAMXG00000032204)	TMCO3 (ENSAMXG00000016183) #26	tfdp1b (ENSAMXG00000016202) #27	ATP4B (ENSAMXG00000016214) #28	grk1a (ENSAMXG00000032932) #29	cenpe (ENSAMXG00000037702)	ENSAMXG00000009521	ENSAMXG00000038597	pros1 (ENSAMXG00000009492)	RASA3 (ENSAMXG00000034928) #31	GFUS (ENSAMXG00000042658)	GFUS (ENSAMXG00000032502)
Red-bellied piranha	MODERN SPECIES	78	ENSPNAG00000011569	ENSPNAG00000001789	dusp27 (ENSPNAG00000001783)	ENSPNAG00000011512	CD247 (ENSPNAG00000011477)	creg1 (ENSPNAG00000001749)	ENSPNAG00000011463	ENSPNAG00000011459	f7l (ENSPNAG00000011388) #16	f7 (ENSPNAG00000011383) ##16	f7i (ENSPNAG00000011375) ##16	f10 (ENSPNAG00000011366) #17	prozb (ENSPNAG00000001697) #18	pcid2 (ENSPNAG00000006808) #19	cul4a (ENSPNAG00000011253) #21	LAMP1 (ENSPNAG00000011224) #22	grtp1a (ENSPNAG00000011216) #23	ENSPNAG00000011206 #25	dcun1d2b (ENSPNAG00000011188)	TMCO3 (ENSPNAG00000011155) #26	tfdp1b (ENSPNAG00000001561) #27	ATP4B (ENSPNAG00000001555) #28	grk1a (ENSPNAG00000011116) #29	ENSPNAG00000001525	ENSPNAG00000011077	ENSPNAG00000001497	ENSPNAG00000010946	pros1 (ENSPNAG00000010927)	RASA3 (ENSPNAG00000001462) #31	TPP2 (ENSPNAG00000010860)	ENSPNAG00000010712
Electric eel	MODERN SPECIES	8	ILDR2 (ENSEEEG00000011925)	GPA33 (ENSEEEG00000011929)	ENSEEEG00000011935	dusp27 (ENSEEEG00000011939)	ENSEEEG00000011940	CD247 (ENSEEEG00000011941)	creg1 (ENSEEEG00000011942)	ENSEEEG00000011943	ENSEEEG00000011944	f7i (ENSEEEG00000011945) ##16	f10 (ENSEEEG00000012023) #17	ENSEEEG00000012085 #17	ENSEEEG00000012087	pcid2 (ENSEEEG00000012089) #19	cul4a (ENSEEEG00000012123) #21	LAMP1 (ENSEEEG00000012337) #22	grtp1a (ENSEEEG00000012340) #23	adprhl1 (ENSEEEG00000012344) #25	dcun1d2b (ENSEEEG00000012381)	TMCO3 (ENSEEEG00000012415) #26	ENSEEEG00000012467	tfdp1b (ENSEEEG00000012468) #27	ATP4B (ENSEEEG00000012470) #28	grk1a (ENSEEEG00000012472) #29	ENSEEEG00000012491	ENSEEEG00000012492	ENSEEEG00000012494	pros1 (ENSEEEG00000012497)	RASA3 (ENSEEEG00000012509) #31	TPP2 (ENSEEEG00000013124)	ENSEEEG00000013127
Cyprinoidei	ANCESTRAL SPECIES	34	ENSGT00940000160248.b	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000157831.l.b	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT00940000159927 #29	ENSGT00940000160597	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00940000172032	ENSGT00390000014623	ENSGT00940000156596.c.b	ENSGT00940000156596.c.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	119	ENSGT00390000000155.a.a.b	ENSGT00390000018895.a.f	ENSGT00950000183058.A.a.d.b	ENSGT00940000154851.A.d	ENSGT00940000157831.l.a	ENSGT00990000210185	ENSGT00390000005914.a.j	ENSGT00940000153118.e	ENSGT00940000154474.A.j #16	ENSGT00940000154474.B.a.j ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694.d #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905.a #21	ENSGT00950000182899.B.a.i.a.a #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r.b	ENSGT00390000001394 #26	ENSGT00940000154652.o.c.b #27	ENSGT00940000159927.a #29	ENSGT00940000160597.e	ENSGT00940000154035.b.e.b	ENSGT00940000157953.b.b #31	ENSGT00390000014623.b	ENSGT00940000156596.c.b.b	ENSGT00940000159229.c	ENSGT00940000163631	ENSGT00390000009400.k	ENSGT00530000063169.b.b.g
Cyprininae_a	ANCESTRAL SPECIES	125	ENSGT00390000000155.a.a.b	ENSGT00390000018895.a.f	ENSGT00950000183058.A.a.d.b	ENSGT00940000154851.A.d	ENSGT00940000157831.l.a	ENSGT00990000210185	ENSGT00390000005914.a.j	ENSGT00940000153118.e	ENSGT00940000154474.A.j #16	ENSGT00940000154474.B.a.j ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694.d #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905.a #21	ENSGT00950000182899.B.a.i.a.a #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r.b	ENSGT00390000001394 #26	ENSGT00940000154652.o.c.b #27	ENSGT00940000159927.a #29	ENSGT00940000160597.e	ENSGT00940000166849	ENSGT00940000154035.b.f	ENSGT00940000161271.a	ENSGT00940000154035.b.e.b	ENSGT00940000157953.b.b #31	ENSGT00390000014623.b	ENSGT00940000156596.c.b.b	ENSGT00940000159229.c
Common carp reference	MODERN SPECIES	22	tmem39a (ENSCCRG00000024492)	ildr1a (ENSCCRG00000047905)	ENSCCRG00000073453	ENSCCRG00000014946	ENSCCRG00000001008	ENSCCRG00000076913	ENSCCRG00000000977	ENSCCRG00000000954	ENSCCRG00000075371	f7 (ENSCCRG00000055192) ##16	f7i (ENSCCRG00000052477) ##16	f10 (ENSCCRG00000052475) #17	prozb (ENSCCRG00000017700) #18	pcid2 (ENSCCRG00000017657) #19	cul4a (ENSCCRG00000057822) #21	LAMP1 (ENSCCRG00000017507) #22	grtp1a (ENSCCRG00000029007) #23	ENSCCRG00000053059	adprhl1 (ENSCCRG00000072194) #25	dcun1d2b (ENSCCRG00000063904)	TMCO3 (ENSCCRG00000029510) #26	tfdp1b (ENSCCRG00000029503) #27	grk1a (ENSCCRG00000029499) #29	cenpe (ENSCCRG00000081119)	ENSCCRG00000063313	gas6 (ENSCCRG00000012226)	ENSCCRG00000064039	pros1 (ENSCCRG00000012237)	ENSCCRG00000023415 #31	ENSCCRG00000042323	ENSCCRG00000053952
Goldfish	MODERN SPECIES		ENSCARG00000027202	ENSCARG00000027196	ENSCARG00000027148	ENSCARG00000027126	creg1 (ENSCARG00000027114)	ENSCARG00000027108	ENSCARG00000027103	f7i (ENSCARG00000027072) ##16	f10 (ENSCARG00000027004) #17	ENSCARG00000026994	prozb (ENSCARG00000026965) #18	ENSCARG00000026957	ENSCARG00000026949	ENSCARG00000026942	pcid2 (ENSCARG00000026862) #19	LAMP1 (ENSCARG00000026835) #22	grtp1a (ENSCARG00000026820) #23	adprhl1 (ENSCARG00000026806) #25	dcun1d2b (ENSCARG00000026668)	cul4a (ENSCARG00000026218) #21	tfdp1b (ENSCARG00000026144) #27	grk1a (ENSCARG00000026103) #29	cenpe (ENSCARG00000026007)	ENSCARG00000025960	ENSCARG00000025842	pros1 (ENSCARG00000025780)	RASA3 (ENSCARG00000025477) #31	TPP2 (ENSCARG00000025207)	mettl21e (ENSCARG00000025166)	ENSCARG00000025124	blzf1 (ENSCARG00000025102)
Cyprininae	ANCESTRAL SPECIES	1341															ENSGT00940000156905.b #21	ENSGT00950000182899.B.a.i.a.b #22
Cyprininae_a	ANCESTRAL SPECIES	1011															ENSGT00940000156905.b #21	ENSGT00950000182899.B.a.i.a.b #22
Common carp reference	MODERN SPECIES	27	tmem39a (ENSCCRG00000047906)	ILDR2 (ENSCCRG00000082215)	ENSCCRG00000070152	ENSCCRG00000079561	ENSCCRG00000063707	STYXL2 (ENSCCRG00000018027)	ENSCCRG00000060903	CD247 (ENSCCRG00000058388)	creg1 (ENSCCRG00000017997)	ENSCCRG00000065089	ENSCCRG00000018008	f7l (ENSCCRG00000077146) #16	ENSCCRG00000069274 ##16	f10 (ENSCCRG00000059290) #17	ENSCCRG00000080137 #21	ENSCCRG00000022028 #22	dcun1d2b (ENSCCRG00000022337)	tfdp1b (ENSCCRG00000022095) #27	grk1a (ENSCCRG00000077687) #29	cenpe (ENSCCRG00000022008)	ENSCCRG00000026603	ENSCCRG00000022001	pros1 (ENSCCRG00000007074)	ENSCCRG00000007087 #31	ENSCCRG00000015694	ENSCCRG00000062772	ENSCCRG00000009911	ENSCCRG00000009980	mrpl16 (ENSCCRG00000072990)	ENSCCRG00000056818	ENSCCRG00000067716
Goldfish	MODERN SPECIES	18	ildr1a (ENSCARG00000015164)	tmem39a (ENSCARG00000015108)	PRSS23 (ENSCARG00000015089)	hikeshi (ENSCARG00000015061)	eed (ENSCARG00000015002)	cep97 (ENSCARG00000014981)	rpl24 (ENSCARG00000014961)	dusp27 (ENSCARG00000014946)	ENSCARG00000014930	ENSCARG00000014906	ENSCARG00000014903	ENSCARG00000014896	f7l (ENSCARG00000014881) #16	f7 (ENSCARG00000014870) ##16	f10 (ENSCARG00000014838) #17	ENSCARG00000014797 #22	ENSCARG00000014792	tfdp1b (ENSCARG00000014786) #27	grk1a (ENSCARG00000014773) #29	ENSCARG00000014764	pros1 (ENSCARG00000014317)	RASA3 (ENSCARG00000014100) #31	ENSCARG00000014050	mettl21e (ENSCARG00000014035)	trmt10c (ENSCARG00000014028)	mrpl16 (ENSCARG00000014021)	ENSCARG00000014017	ENSCARG00000014007	jam2a (ENSCARG00000013978)	atp5pf (ENSCARG00000013964)	APP (ENSCARG00000005185)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000182899.B.a.i.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000182899.B.a.i.b #22
Golden-line barbel	MODERN SPECIES	1663																LAMP1 (ENSSGRG00000026036) #22	grtp1a (ENSSGRG00000026013) #23	adprhl1 (ENSSGRG00000026008) #25	dcun1d2b (ENSSGRG00000025962)	grk1a (ENSSGRG00000025924) #29	ENSSGRG00000025880	ENSSGRG00000025877	gas6 (ENSSGRG00000025874)	pros1 (ENSSGRG00000025873)	ENSSGRG00000025706 #31
Zebrafish	MODERN SPECIES		ENSDARG00000099319	eed (ENSDARG00000099640)	hikeshi (ENSDARG00000104071)	tmem39a (ENSDARG00000102746)	ildr1a (ENSDARG00000103929)	ENSDARG00000101073	gpa33a (ENSDARG00000100223)	f7l (ENSDARG00000100782) #16	f7 (ENSDARG00000034862) ##16	f7i (ENSDARG00000075827) ##16	f10 (ENSDARG00000088581) #17	prozb (ENSDARG00000076900) #18	pcid2 (ENSDARG00000013802) #19	cul4a (ENSDARG00000096578) #21	ENSDARG00000109848	LAMP1 (ENSDARG00000100181) #22	grtp1a (ENSDARG00000029936) #23	adprhl1 (ENSDARG00000041589) #25	dcun1d2b (ENSDARG00000041592)	TMCO3 (ENSDARG00000075108) #26	tfdp1b (ENSDARG00000016304) #27	grk1a (ENSDARG00000058803) #29	cenpe (ENSDARG00000063385)	gas6 (ENSDARG00000007804)	pros1 (ENSDARG00000068261)	RASA3 (ENSDARG00000063371) #31	TPP2 (ENSDARG00000078751)	METTL21C (ENSDARG00000078878)	mettl21e (ENSDARG00000016343)	ENSDARG00000023678	blzf1 (ENSDARG00000011299)
Clupeiformes	ANCESTRAL SPECIES	126	ENSGT00940000159723	ENSGT00940000157831	ENSGT00940000179735	ENSGT01020000232945	ENSGT00390000018208	ENSGT00390000005914.a	ENSGT00940000153118	ENSGT00940000158209	ENSGT00940000154474.A #16	ENSGT00940000154474.B.a ##16	ENSGT00940000154474.B.b ##16	ENSGT00940000157694 #17	ENSGT00940000154505.A.c #18	ENSGT00390000001101 #19	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00940000155696.ub	ENSGT00860000133881	ENSGT00940000161407.b	ENSGT00940000161024.d	ENSGT00390000006347.b	ENSGT00940000155075.a.a.b	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927 #29	ENSGT00940000166849	ENSGT00940000154035.b
Denticle herring	MODERN SPECIES	6	ENSDCDG00000035202	ENSDCDG00000035199	dusp27 (ENSDCDG00000035196)	ENSDCDG00000035194	ENSDCDG00000035193	creg1 (ENSDCDG00000035191)	ENSDCDG00000035190	ENSDCDG00000035187	f7l (ENSDCDG00000035158) #16	f7 (ENSDCDG00000035136) ##16	f7i (ENSDCDG00000035125) ##16	f10 (ENSDCDG00000035118) #17	ENSDCDG00000035096 ##16	pcid2 (ENSDCDG00000035079) #19	cul4a (ENSDCDG00000035031) #21	LAMP1 (ENSDCDG00000035018) #22	grtp1a (ENSDCDG00000035016) #23	ENSDCDG00000035012	ENSDCDG00000035009	ENSDCDG00000035002	ENSDCDG00000034994	ENSDCDG00000034992	ENSDCDG00000034988	grip1 (ENSDCDG00000034280)	cand1 (ENSDCDG00000033952)	dyrk2 (ENSDCDG00000033928)	ENSDCDG00000033924	ENSDCDG00000033923	ENSDCDG00000033920	mdm1 (ENSDCDG00000033916)	ENSDCDG00000033908
Euteleosteomorpha	ANCESTRAL SPECIES	173														ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Protacanthopterygii	ANCESTRAL SPECIES	161	ENSGT00940000156851.d	ENSGT00910000144296	ENSGT00390000004153.d	ENSGT00940000162528	ENSGT00940000156083	ENSGT00940000154200.A.b	ENSGT00940000157563	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00390000001134.a.b	ENSGT00390000005954	ENSGT00390000013790	ENSGT00530000063106.C	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271
Salmoninae	ANCESTRAL SPECIES	425	ENSGT00910000144296	ENSGT00390000004153.d	ENSGT00940000162528	ENSGT00940000156083	ENSGT00940000160645.o.z	ENSGT00940000154200.A.b	ENSGT00940000157563	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00390000001134.a.b	ENSGT00390000005954.lb	ENSGT00390000013790	ENSGT00530000063106.C.o.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271
Huchen	MODERN SPECIES	1091										ENSHHUG00000030183	mzt1 (ENSHHUG00000030178)	bora (ENSHHUG00000030171)	DIS3 (ENSHHUG00000030063)	tgfbrap1 (ENSHHUG00000030032)	cul4a (ENSHHUG00000030003) #21	LAMP1 (ENSHHUG00000029995) #22	grtp1a (ENSHHUG00000029993) #23	adprhl1 (ENSHHUG00000029984) #25	dcun1d2b (ENSHHUG00000029982)	TMCO3 (ENSHHUG00000029977) #26	tfdp1b (ENSHHUG00000029961) #27	ATP4B (ENSHHUG00000029957) #28	grk1a (ENSHHUG00000029878) #29	gas6 (ENSHHUG00000029872)	lims1 (ENSHHUG00000029855)	ENSHHUG00000029851
Salmoninae_a	ANCESTRAL SPECIES	81	ENSGT00940000162528	ENSGT00940000156083	ENSGT00940000160645.o.z	ENSGT00940000154200.A.b	ENSGT00940000157563	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b.c.a	ENSGT00390000001134.a.b	ENSGT00390000005954.mb	ENSGT00390000013790	ENSGT00530000063106.C.o.a	ENSGT00530000063872.B.a	ENSGT00530000063106.C.o.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000154927.d #23	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000154652.o #27	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000153518.d.b.a.b.h
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	148	ENSGT00940000156083	ENSGT00940000160645.o.z	ENSGT00940000154200.A.b	ENSGT00940000157563	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b.c.b	ENSGT01030000234518.C.a.b.a.b.b.c.a	ENSGT00390000001134.a.b	ENSGT00390000005954.mb	ENSGT00390000013790	ENSGT00530000063106.C.o.b	ENSGT00530000063596.A.i.e	ENSGT00990000213224	ENSGT00940000156905.f #21	ENSGT00950000182899.B.a.i.d #22	ENSGT00950000182899.B.a.i.c #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r.h	ENSGT00390000001394.i #26
Atlantic salmon	MODERN SPECIES	7	vps8 (ENSSSAG00000109736)	marchf4l (ENSSSAG00000015958)	pcca (ENSSSAG00000112929)	zic2b (ENSSSAG00000110691)	ENSSSAG00000108019	tm9sf2 (ENSSSAG00000092761)	ENSSSAG00000110573	GPR183 (ENSSSAG00000085874)	ENSSSAG00000099155	mzt1 (ENSSSAG00000105328)	ENSSSAG00000080926	DIS3 (ENSSSAG00000102477)	ENSSSAG00000098871	cul4a (ENSSSAG00000040266) #21	ENSSSAG00000099231	LAMP1 (ENSSSAG00000061034) #22	grtp1a (ENSSSAG00000007826) #23	ENSSSAG00000091292 #25	dcun1d2b (ENSSSAG00000103588)	TMCO3 (ENSSSAG00000082047) #26	tfdp1b (ENSSSAG00000054501) #27	ATP4B (ENSSSAG00000106346) #28	grk1a (ENSSSAG00000089769) #29	ENSSSAG00000118771	ENSSSAG00000060142	ENSSSAG00000117135	ENSSSAG00000006290	ENSSSAG00000100277	ENSSSAG00000119076	ENSSSAG00000105556	ENSSSAG00000102624
River trout	MODERN SPECIES	32	ENSSTUG00000035046	grtp1a (ENSSTUG00000035012) #23	adprhl1 (ENSSTUG00000034988) #25	dcun1d2b (ENSSTUG00000034933)	TMCO3 (ENSSTUG00000034539) #26	tfdp1b (ENSSTUG00000034478) #27	ATP4B (ENSSTUG00000034422) #28	grk1a (ENSSTUG00000034405) #29	mzt1 (ENSSTUG00000034386)	bora (ENSSTUG00000034377)	DIS3 (ENSSTUG00000034005)	ENSSTUG00000033968	tgfbrap1 (ENSSTUG00000033880)	ENSSTUG00000033873	cul4a (ENSSTUG00000033526) #21	LAMP1 (ENSSTUG00000033357) #22	ENSSTUG00000033300 #25	dcun1d2b (ENSSTUG00000033235)	TMCO3 (ENSSTUG00000033045) #26	tfdp1b (ENSSTUG00000032999) #27	ATP4B (ENSSTUG00000032984) #28	grk1a (ENSSTUG00000032960) #29	ENSSTUG00000032954	gas6 (ENSSTUG00000032074)	lims2 (ENSSTUG00000031751)	ENSSTUG00000031628	ENSSTUG00000031600	ENSSTUG00000031590	ENSSTUG00000031584	ENSSTUG00000031517	ENSSTUG00000031432
Salmo	ANCESTRAL SPECIES	148	ENSGT00940000158179.a	ENSGT00940000156083	ENSGT00940000160645.o.z	ENSGT00940000154200.A.b	ENSGT00940000157563	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b.c.b	ENSGT01030000234518.C.a.b.a.b.b.c.a	ENSGT00390000001134.a.b	ENSGT00390000005954.mb	ENSGT00390000013790	ENSGT00530000063106.C.o.b	ENSGT00530000063596.A.i.e	ENSGT00990000213224	ENSGT00940000156905.f #21	ENSGT00950000182899.B.a.i.d #22	ENSGT00950000182899.B.a.i.c #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r.h	ENSGT00390000001394.i #26
Atlantic salmon	MODERN SPECIES	8	marchf4l (ENSSSAG00000105954)	ENSSSAG00000107659	pcca (ENSSSAG00000007599)	zic2b (ENSSSAG00000018305)	ENSSSAG00000110044	tm9sf2 (ENSSSAG00000105348)	ENSSSAG00000065600	GPR183 (ENSSSAG00000102450)	ENSSSAG00000110367	mzt1 (ENSSSAG00000080935)	ENSSSAG00000087976	DIS3 (ENSSSAG00000080828)	ENSSSAG00000092162	ENSSSAG00000007944	cul4a (ENSSSAG00000006568) #21	LAMP1 (ENSSSAG00000103986) #22	grtp1a (ENSSSAG00000092925) #23	ENSSSAG00000097404 #23	dcun1d2b (ENSSSAG00000085478)	TMCO3 (ENSSSAG00000015529) #26	tfdp1b (ENSSSAG00000108935) #27	ATP4B (ENSSSAG00000083259) #28	grk1a (ENSSSAG00000120457) #29	ENSSSAG00000118388	gas6 (ENSSSAG00000089342)	lims1 (ENSSSAG00000054422)	ENSSSAG00000103201	ENSSSAG00000117534	ENSSSAG00000109233	ENSSSAG00000099847	ENSSSAG00000010044
Oncorhynchus	ANCESTRAL SPECIES	80	ENSGT00910000144296.g	ENSGT00390000004153.d.d.b	ENSGT00940000162528	ENSGT00940000154200.A.b.a.a	ENSGT00940000157563	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b.c.a	ENSGT00390000001134.a.b	ENSGT00390000005954.mb	ENSGT00390000013790	ENSGT00530000063106.C.o.a	ENSGT00530000063872.B.a	ENSGT00530000063106.C.o.b	ENSGT00530000063596.A.i	ENSGT00940000156905.g.a #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000154927.d #23	ENSGT00940000157453.r	ENSGT00390000001394.l #26
Oncorhynchus_a	ANCESTRAL SPECIES	126	ENSGT00390000007662.d.b.i.a.b	ENSGT00390000007741.b	ENSGT00940000159106.b.c.b	ENSGT00940000156851.d.a	ENSGT00910000144296.g	ENSGT00390000004153.d.d.b	ENSGT00940000162528	ENSGT00950000182999.b.b	ENSGT01030000234518.C.a.b.a.b.b.c.a	ENSGT00390000001134.a.b	ENSGT00390000005954.mb	ENSGT00390000013790	ENSGT00530000063106.C.o.b	ENSGT00530000063596.A.i	ENSGT00940000156905.g.a #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394.l #26
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	34	vps8 (ENSOKIG00005044818)	marchf4l (ENSOKIG00005045292)	pcca (ENSOKIG00005045312)	zic2b (ENSOKIG00005045375)	ENSOKIG00005045389	tm9sf2 (ENSOKIG00005045451)	ubac2 (ENSOKIG00005045915)	GPR183 (ENSOKIG00005045922)	ENSOKIG00005045936	mzt1 (ENSOKIG00005045960)	ENSOKIG00005045968	ENSOKIG00005045980	DIS3 (ENSOKIG00005046013)	TGFBRAP1 (ENSOKIG00005046274)	cul4a (ENSOKIG00005046293) #21	LAMP1 (ENSOKIG00005046382) #22	grtp1a (ENSOKIG00005046415) #23	adprhl1 (ENSOKIG00005046426) #25	dcun1d2b (ENSOKIG00005046433)	ENSOKIG00005046456 #26	ENSOKIG00005046489	tfdp1b (ENSOKIG00005046498) #27	ATP4B (ENSOKIG00005046510) #28	grk1a (ENSOKIG00005046514) #29	gas6 (ENSOKIG00005046526)	ENSOKIG00005046593	ENSOKIG00005046598	ENSOKIG00005046603	ENSOKIG00005046606	ENSOKIG00005046611	ENSOKIG00005046633
Coho salmon	MODERN SPECIES	1456						ENSOKIG00005029067	TM9SF2 (ENSOKIG00005029123)	UBAC2 (ENSOKIG00005030577)	GPR183 (ENSOKIG00005030611)	ENSOKIG00005030621	mzt1 (ENSOKIG00005030630)	bora (ENSOKIG00005030667)	DIS3 (ENSOKIG00005030731)	tgfbrap1 (ENSOKIG00005031387)	cul4a (ENSOKIG00005031441) #21	ENSOKIG00005031586 #22	grtp1a (ENSOKIG00005031640) #23	ENSOKIG00005031663 #23
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000048776	ENSOMYG00000072676	tm9sf2 (ENSOMYG00000049082)	gpr183b (ENSOMYG00000008578)	UBAC2 (ENSOMYG00000008429)	ENSOMYG00000056517	ENSOMYG00000074122	ENSOMYG00000063967	mzt1 (ENSOMYG00000055359)	ENSOMYG00000053592	DIS3 (ENSOMYG00000001391)	ENSOMYG00000047844	ENSOMYG00000001321	cul4a (ENSOMYG00000053139) #21	ENSOMYG00000065200	LAMP1 (ENSOMYG00000076797) #22	ENSOMYG00000076197	grtp1a (ENSOMYG00000035234) #23	ENSOMYG00000052168 #23	dcun1d2b (ENSOMYG00000062734)	ENSOMYG00000053676	TMCO3 (ENSOMYG00000075740) #26	tfdp1b (ENSOMYG00000008776) #27	ATP4B (ENSOMYG00000076641) #28	grk1a (ENSOMYG00000048425) #29	ENSOMYG00000053783	ENSOMYG00000055340	ENSOMYG00000008829	ENSOMYG00000075963	ENSOMYG00000058326	ENSOMYG00000024460
Rainbow trout	MODERN SPECIES	28	pcca (ENSOMYG00000008649)	zic2b (ENSOMYG00000074707)	ENSOMYG00000075718	tm9sf2 (ENSOMYG00000054802)	gpr183b (ENSOMYG00000067837)	UBAC2 (ENSOMYG00000074970)	ENSOMYG00000056429	ENSOMYG00000069409	ENSOMYG00000077855	mzt1 (ENSOMYG00000068050)	ENSOMYG00000001675	DIS3 (ENSOMYG00000002169)	ENSOMYG00000001422	cul4a (ENSOMYG00000001533) #21	ENSOMYG00000061134	LAMP1 (ENSOMYG00000059493) #22	grtp1a (ENSOMYG00000031215) #23	adprhl1 (ENSOMYG00000055668) #25	dcun1d2b (ENSOMYG00000066411)	ENSOMYG00000072226	TMCO3 (ENSOMYG00000066652) #26	tfdp1b (ENSOMYG00000064070) #27	ATP4B (ENSOMYG00000063533) #28	grk1a (ENSOMYG00000067094) #29	ENSOMYG00000057334	ENSOMYG00000008665	ENSOMYG00000011777	ENSOMYG00000048120	ENSOMYG00000064258	ENSOMYG00000029433	ENSOMYG00000026891
Northern pike	MODERN SPECIES	21	vps8 (ENSELUG00000002419)	marchf4l (ENSELUG00000002392)	pcca (ENSELUG00000002383)	zic2b (ENSELUG00000002373)	ENSELUG00000028408	tm9sf2 (ENSELUG00000002363)	ubac2 (ENSELUG00000002348)	gpr183b (ENSELUG00000002343)	dachc (ENSELUG00000002336)	bora (ENSELUG00000002324)	mzt1 (ENSELUG00000002314)	DIS3 (ENSELUG00000002309)	tgfbrap1 (ENSELUG00000024564)	cul4a (ENSELUG00000024538) #21	ENSELUG00000024413 #25	LAMP1 (ENSELUG00000001363) #22	grtp1a (ENSELUG00000001075) #23	dcun1d2b (ENSELUG00000024319)	TMCO3 (ENSELUG00000024215) #26	tfdp1b (ENSELUG00000001013) #27	ATP4B (ENSELUG00000024161) #28	grk1a (ENSELUG00000024140) #29	ENSELUG00000024121	ENSELUG00000024106	ENSELUG00000024087	FBXL3 (ENSELUG00000023952)	ENSELUG00000023940	ENSELUG00000023869	pcdh17 (ENSELUG00000023856)	ENSELUG00000030528	diaph3 (ENSELUG00000023826)
Acanthomorphata	ANCESTRAL SPECIES	68		ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	25	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00900000143708	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Tiger tail seahorse	MODERN SPECIES	333	cyp27c1 (ENSHCOG00000002017)	RBM26 (ENSHCOG00000000066)	ENSHCOG00000002112	pou4f1 (ENSHCOG00000002118)	PCDH9 (ENSHCOG00000002129)	PCDH20 (ENSHCOG00000002135)	tdrd3 (ENSHCOG00000002157)	diaph3 (ENSHCOG00000002189)	ENSHCOG00000002195	pcdh17 (ENSHCOG00000002202)	ENSHCOG00000002219	lims1 (ENSHCOG00000002245)	ENSHCOG00000002256	tgfbrap1 (ENSHCOG00000002272)	cul4a (ENSHCOG00000002299) #21	LAMP1 (ENSHCOG00000002316) #22	grtp1a (ENSHCOG00000002324) #23	adprhl1 (ENSHCOG00000002333) #25	dcun1d2b (ENSHCOG00000000072)	TMCO3 (ENSHCOG00000002553) #26	ENSHCOG00000002583	ENSHCOG00000002608
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00900000143708	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT01030000234575.c.a.a.a.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT01030000234575.c.a.a.a.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
Poecilia	ANCESTRAL SPECIES	4	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
NAME_6	ANCESTRAL SPECIES	5						ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c.n.a	ENSGT00940000156596.c.n.b	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Sailfin molly	MODERN SPECIES	747												lims1 (ENSPLAG00000009895)	ENSPLAG00000009923	tgfbrap1 (ENSPLAG00000009967)	cul4a (ENSPLAG00000010026) #21	LAMP1 (ENSPLAG00000010031) #22	grtp1a (ENSPLAG00000000227) #23	adprhl1 (ENSPLAG00000010101) #25	dcun1d2b (ENSPLAG00000010125)	TMCO3 (ENSPLAG00000010182) #26	grk1a (ENSPLAG00000010206) #29	ENSPLAG00000010242	ENSPLAG00000010262	pros1 (ENSPLAG00000010309)	RASA3 (ENSPLAG00000010493) #31	TPP2 (ENSPLAG00000010666)	METTL21C (ENSPLAG00000010707)	ENSPLAG00000010721	mettl21e (ENSPLAG00000010738)	ENSPLAG00000010748	blzf1 (ENSPLAG00000010765)
Amazon molly	MODERN SPECIES	311							PCDH20 (ENSPFOG00000019987)	tdrd3 (ENSPFOG00000012450)	diaph3 (ENSPFOG00000011544)	pcdh17 (ENSPFOG00000011453)	ENSPFOG00000011445	ENSPFOG00000011372	ENSPFOG00000011351	tgfbrap1 (ENSPFOG00000011250)	cul4a (ENSPFOG00000011066) #21	LAMP1 (ENSPFOG00000011032) #22	grtp1a (ENSPFOG00000010898) #23	adprhl1 (ENSPFOG00000024757) #25	dcun1d2b (ENSPFOG00000010792)	TMCO3 (ENSPFOG00000010638) #26	grk1a (ENSPFOG00000010579) #29	ENSPFOG00000010447	ENSPFOG00000010310	pros1 (ENSPFOG00000010160)	RASA3 (ENSPFOG00000009695) #31	TPP2 (ENSPFOG00000009375)	ENSPFOG00000024431	ENSPFOG00000009290	mettl21e (ENSPFOG00000023678)	ENSPFOG00000009287	blzf1 (ENSPFOG00000009221)
Guppy	MODERN SPECIES	455	ercc3 (ENSPREG00000020921)	cyp27c1 (ENSPREG00000020972)	RBM26 (ENSPREG00000021003)	ENSPREG00000021061	pou4f1 (ENSPREG00000021072)	PCDH9 (ENSPREG00000021112)	PCDH20 (ENSPREG00000021133)	tdrd3 (ENSPREG00000021145)	diaph3 (ENSPREG00000021206)	pcdh17 (ENSPREG00000021357)	lims2 (ENSPREG00000021388)	ENSPREG00000021396	ENSPREG00000021402	tgfbrap1 (ENSPREG00000021428)	cul4a (ENSPREG00000021475) #21	LAMP1 (ENSPREG00000021502) #22	grtp1a (ENSPREG00000021523) #23	adprhl1 (ENSPREG00000021533) #25	dcun1d2b (ENSPREG00000021540)	TMCO3 (ENSPREG00000021558) #26	grk1a (ENSPREG00000021588) #29	ENSPREG00000021598	ENSPREG00000021606	pros1 (ENSPREG00000021616)	RASA3 (ENSPREG00000021641) #31	TPP2 (ENSPREG00000021701)	ENSPREG00000021755	mettl21e (ENSPREG00000021761)	ENSPREG00000021777	blzf1 (ENSPREG00000021800)	trmt10c (ENSPREG00000021808)
Platyfish	MODERN SPECIES	18	RBM26 (ENSXMAG00000001679)	ENSXMAG00000001676	pou4f1 (ENSXMAG00000025737)	PCDH9 (ENSXMAG00000001671)	ENSXMAG00000021368	PCDH20 (ENSXMAG00000005117)	tdrd3 (ENSXMAG00000005103)	diaph3 (ENSXMAG00000005027)	pcdh17 (ENSXMAG00000028214)	ENSXMAG00000026089	ENSXMAG00000019298	lims2 (ENSXMAG00000019297)	ENSXMAG00000019295	tgfbrap1 (ENSXMAG00000019291)	cul4a (ENSXMAG00000019288) #21	LAMP1 (ENSXMAG00000019282) #22	grtp1a (ENSXMAG00000019280) #23	adprhl1 (ENSXMAG00000020870) #25	dcun1d2b (ENSXMAG00000019276)	TMCO3 (ENSXMAG00000019274) #26	grk1a (ENSXMAG00000019265) #29	ENSXMAG00000019262	ENSXMAG00000019259	pros1 (ENSXMAG00000019256)	RASA3 (ENSXMAG00000019239) #31	TPP2 (ENSXMAG00000019214)	ENSXMAG00000023842	mettl21e (ENSXMAG00000019209)	ENSXMAG00000019207	trmt10c (ENSXMAG00000019205)	blzf1 (ENSXMAG00000019198)
NAME_4	ANCESTRAL SPECIES	6	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
Sheepshead minnow	MODERN SPECIES	324								ENSCVAG00000007973	diaph3 (ENSCVAG00000008903)	pcdh17 (ENSCVAG00000008934)	ENSCVAG00000008963	lims1 (ENSCVAG00000009001)	ENSCVAG00000009018	tgfbrap1 (ENSCVAG00000009053)	cul4a (ENSCVAG00000009119) #21	LAMP1 (ENSCVAG00000009146) #22	grtp1a (ENSCVAG00000009193) #23	adprhl1 (ENSCVAG00000009221) #25	dcun1d2b (ENSCVAG00000009241)	TMCO3 (ENSCVAG00000009283) #26	grk1a (ENSCVAG00000009306) #29	ENSCVAG00000009311	ENSCVAG00000009327	pros1 (ENSCVAG00000009364)
Mummichog	MODERN SPECIES	2316				PCDH20 (ENSFHEG00000009488)	ENSFHEG00000009498	tdrd3 (ENSFHEG00000009513)	diaph3 (ENSFHEG00000009564)	pcdh17 (ENSFHEG00000009587)	ENSFHEG00000009604	ENSFHEG00000009661	ENSFHEG00000009682	lims2 (ENSFHEG00000009702)	ENSFHEG00000009729	tgfbrap1 (ENSFHEG00000009757)	cul4a (ENSFHEG00000009804) #21	LAMP1 (ENSFHEG00000009812) #22	grtp1a (ENSFHEG00000009846) #23	adprhl1 (ENSFHEG00000009880) #25	dcun1d2b (ENSFHEG00000009914)	TMCO3 (ENSFHEG00000009985) #26	grk1a (ENSFHEG00000010010) #29	ENSFHEG00000010065	ENSFHEG00000010074	pros1 (ENSFHEG00000010089)	RASA3 (ENSFHEG00000000226) #31
Aplocheiloidei	ANCESTRAL SPECIES	16	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
Mangrove rivulus	MODERN SPECIES	5	cyp27c1 (ENSKMAG00000021776)	RBM26 (ENSKMAG00000021802)	ENSKMAG00000021828	pou4f1 (ENSKMAG00000021832)	PCDH9 (ENSKMAG00000021839)	PCDH20 (ENSKMAG00000021845)	tdrd3 (ENSKMAG00000021849)	diaph3 (ENSKMAG00000021857)	ENSKMAG00000021870	pcdh17 (ENSKMAG00000021875)	ENSKMAG00000021883	lims1 (ENSKMAG00000021887)	ENSKMAG00000021897	tgfbrap1 (ENSKMAG00000021903)	cul4a (ENSKMAG00000021914) #21	LAMP1 (ENSKMAG00000021920) #22	grtp1a (ENSKMAG00000021923) #23	ENSKMAG00000021927 #25	dcun1d2b (ENSKMAG00000021932)	TMCO3 (ENSKMAG00000021942) #26	grk1a (ENSKMAG00000021947) #29	ENSKMAG00000021951	ENSKMAG00000021955	pros1 (ENSKMAG00000021960)	RASA3 (ENSKMAG00000021969) #31	TPP2 (ENSKMAG00000021999)	ENSKMAG00000022012	mettl21e (ENSKMAG00000022016)	ENSKMAG00000022019	blzf1 (ENSKMAG00000022025)	trmt10c (ENSKMAG00000022027)
Oryzias	ANCESTRAL SPECIES	13	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b	ENSGT00390000002038
Indian medaka	MODERN SPECIES	26	ENSOMEG00000015601	pou4f1 (ENSOMEG00000015573)	PCDH9 (ENSOMEG00000000992)	PCDH20 (ENSOMEG00000015652)	tdrd3 (ENSOMEG00000015668)	diaph3 (ENSOMEG00000015857)	pcdh17 (ENSOMEG00000015923)	ENSOMEG00000015944	ENSOMEG00000015964	ENSOMEG00000015995	lims1 (ENSOMEG00000016031)	ENSOMEG00000016073	ENSOMEG00000016092	tgfbrap1 (ENSOMEG00000016116)	cul4a (ENSOMEG00000016152) #21	LAMP1 (ENSOMEG00000016182) #22	grtp1a (ENSOMEG00000016233) #23	ENSOMEG00000016259 #23	dcun1d2b (ENSOMEG00000016277)	TMCO3 (ENSOMEG00000016319) #26	grk1a (ENSOMEG00000016347) #29	ENSOMEG00000016377	ENSOMEG00000016401	pros1 (ENSOMEG00000016445)	RASA3 (ENSOMEG00000000413) #31	TPP2 (ENSOMEG00000016689)	ENSOMEG00000016522	mettl21e (ENSOMEG00000016739)	ENSOMEG00000016762	ENSOMEG00000016797	trmt10c (ENSOMEG00000016820)
Javanese ricefish	MODERN SPECIES	17	RBM26 (ENSOJAG00000013453)	ENSOJAG00000015371	pou4f1 (ENSOJAG00000015400)	PCDH9 (ENSOJAG00000015413)	ENSOJAG00000015458	PCDH20 (ENSOJAG00000015465)	tdrd3 (ENSOJAG00000015477)	diaph3 (ENSOJAG00000015716)	pcdh17 (ENSOJAG00000017896)	ENSOJAG00000017942	ENSOJAG00000017949	lims1 (ENSOJAG00000018005)	FBXL3 (ENSOJAG00000018459)	tgfbrap1 (ENSOJAG00000018479)	cul4a (ENSOJAG00000018530) #21	LAMP1 (ENSOJAG00000018701) #22	grtp1a (ENSOJAG00000018802) #23	adprhl1 (ENSOJAG00000018817) #25	dcun1d2b (ENSOJAG00000018855)	TMCO3 (ENSOJAG00000018966) #26	grk1a (ENSOJAG00000019126) #29	ENSOJAG00000019144	ENSOJAG00000003676	pros1 (ENSOJAG00000003849)	RASA3 (ENSOJAG00000004793) #31	TPP2 (ENSOJAG00000006472)	ENSOJAG00000006694	mettl21e (ENSOJAG00000006720)	ENSOJAG00000006733	trmt10c (ENSOJAG00000006744)	txnl4b (ENSOJAG00000006750)
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT01100000263510.A.a.b.c.a.b.b.b.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159491.hb.b	ENSGT00530000063596.A.i.c	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00530000063169.b.b	ENSGT00390000010779.a.b.b
Chinese medaka	MODERN SPECIES	72	cyp27c1 (ENSOSIG00000015634)	RBM26 (ENSOSIG00000015639)	pou4f1 (ENSOSIG00000015718)	PCDH9 (ENSOSIG00000015722)	ENSOSIG00000015726	PCDH20 (ENSOSIG00000015730)	tdrd3 (ENSOSIG00000015734)	ENSOSIG00000015736	diaph3 (ENSOSIG00000015745)	pcdh17 (ENSOSIG00000015757)	ENSOSIG00000015760	lims1 (ENSOSIG00000015777)	ENSOSIG00000016527	tgfbrap1 (ENSOSIG00000016530)	cul4a (ENSOSIG00000016568) #21	LAMP1 (ENSOSIG00000016696) #22	grtp1a (ENSOSIG00000016700) #23	adprhl1 (ENSOSIG00000016702) #25	dcun1d2b (ENSOSIG00000016713)	TMCO3 (ENSOSIG00000016762) #26	grk1a (ENSOSIG00000016772) #29	ENSOSIG00000016778	ENSOSIG00000016797	pros1 (ENSOSIG00000017050)	RASA3 (ENSOSIG00000017118) #31	ENSOSIG00000017455	TPP2 (ENSOSIG00000017481)	mettl21e (ENSOSIG00000017525)	ENSOSIG00000017531	trmt10c (ENSOSIG00000017535)	txnl4b (ENSOSIG00000017537)
Japanese Medaka HdrR	MODERN SPECIES	17	PCDH9 (ENSORLG00000004456)	ENSORLG00000023378	ENSORLG00000022764	PCDH20 (ENSORLG00000027072)	tdrd3 (ENSORLG00000004502)	diaph3 (ENSORLG00000004522)	pcdh17 (ENSORLG00000004535)	ENSORLG00000030243	ENSORLG00000023965	ENSORLG00000027862	ENSORLG00000004548	lims1 (ENSORLG00000004567)	ENSORLG00000004577	tgfbrap1 (ENSORLG00000004590)	cul4a (ENSORLG00000004625) #21	LAMP1 (ENSORLG00000004652) #22	grtp1a (ENSORLG00000004671) #23	adprhl1 (ENSORLG00000004693) #25	dcun1d2b (ENSORLG00000004697)	TMCO3 (ENSORLG00000004713) #26	grk1a (ENSORLG00000004724) #29	gas6 (ENSORLG00000004757)	ENSORLG00000004739	pros1 (ENSORLG00000004826)	RASA3 (ENSORLG00000004873) #31	TPP2 (ENSORLG00000004938)	ENSORLG00000004952	mettl21e (ENSORLG00000004958)	ENSORLG00000004984	trmt10c (ENSORLG00000004992)	txnl4b (ENSORLG00000004999)
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT01030000234575.c.a.a.a.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Burton s mouthbrooder	MODERN SPECIES	417										pcdh17 (ENSHBUG00000001848)	ENSHBUG00000001835	ENSHBUG00000001817	ENSHBUG00000001813	tgfbrap1 (ENSHBUG00000001801)	cul4a (ENSHBUG00000001784) #21	LAMP1 (ENSHBUG00000000017) #22	grtp1a (ENSHBUG00000001762) #23	adprhl1 (ENSHBUG00000001754) #25	dcun1d2b (ENSHBUG00000001745)	TMCO3 (ENSHBUG00000001730) #26	ATP4B (ENSHBUG00000001715) #28	grk1a (ENSHBUG00000001709) #29	ENSHBUG00000001698	ENSHBUG00000001693	pros1 (ENSHBUG00000001683)	RASA3 (ENSHBUG00000001663) #31	TPP2 (ENSHBUG00000001641)	METTL21C (ENSHBUG00000001631)	mettl21e (ENSHBUG00000001626)	ENSHBUG00000001620	blzf1 (ENSHBUG00000001610)
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
P. nyererei	MODERN SPECIES	306	RBM26 (ENSPNYG00000001371)	ENSPNYG00000001437	pou4f1 (ENSPNYG00000001463)	ENSPNYG00000001508	PCDH9 (ENSPNYG00000001537)	PCDH20 (ENSPNYG00000001556)	tdrd3 (ENSPNYG00000001569)	diaph3 (ENSPNYG00000001606)	pcdh17 (ENSPNYG00000002247)	ENSPNYG00000002265	ENSPNYG00000002292	lims2 (ENSPNYG00000002341)	ENSPNYG00000002383	tgfbrap1 (ENSPNYG00000002419)	cul4a (ENSPNYG00000002481) #21	LAMP1 (ENSPNYG00000002543) #22	grtp1a (ENSPNYG00000002562) #23	adprhl1 (ENSPNYG00000002579) #25	dcun1d2b (ENSPNYG00000002670)	TMCO3 (ENSPNYG00000003055) #26	ATP4B (ENSPNYG00000003115) #28	grk1a (ENSPNYG00000003163) #29	ENSPNYG00000003216	ENSPNYG00000003226	pros1 (ENSPNYG00000003243)	RASA3 (ENSPNYG00000003298) #31	TPP2 (ENSPNYG00000003396)	ENSPNYG00000003506	mettl21e (ENSPNYG00000003525)	ENSPNYG00000003544	ENSPNYG00000003556
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394.e #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Zebra mbuna	MODERN SPECIES	1091	PCDH9 (ENSMZEG00005004655)	ENSMZEG00005004605	ENSMZEG00005004591	PCDH20 (ENSMZEG00005004582)	tdrd3 (ENSMZEG00005004551)	diaph3 (ENSMZEG00005003495)	ENSMZEG00005003447	ENSMZEG00005003437	ENSMZEG00005003400	pcdh17 (ENSMZEG00005003369)	ENSMZEG00005003317	lims1 (ENSMZEG00005003279)	ENSMZEG00005003249	tgfbrap1 (ENSMZEG00005003186)	cul4a (ENSMZEG00005003132) #21	LAMP1 (ENSMZEG00005003105) #22	grtp1a (ENSMZEG00005003096) #23	adprhl1 (ENSMZEG00005003088) #25	dcun1d2b (ENSMZEG00005003066)	TMCO3 (ENSMZEG00005003027) #26	ATP4B (ENSMZEG00005002959) #28	grk1a (ENSMZEG00005002946) #29	TMCO3 (ENSMZEG00005002910) #26	ATP4B (ENSMZEG00005002835) #28	grk1a (ENSMZEG00005002807) #29	ENSMZEG00005002798	ENSMZEG00005002777	ENSMZEG00005002762	pros1 (ENSMZEG00005002744)	RASA3 (ENSMZEG00005002698) #31	gpc5a (ENSMZEG00005002681)
Eastern happy	MODERN SPECIES		PCDH9 (ENSACLG00000022872)	ENSACLG00000022894	ENSACLG00000022918	PCDH20 (ENSACLG00000022951)	tdrd3 (ENSACLG00000022962)	diaph3 (ENSACLG00000023006)	ENSACLG00000023735	pcdh17 (ENSACLG00000023743)	ENSACLG00000023786	ENSACLG00000023788	ENSACLG00000023796	lims2 (ENSACLG00000023804)	ENSACLG00000023835	tgfbrap1 (ENSACLG00000023851)	cul4a (ENSACLG00000023869) #21	LAMP1 (ENSACLG00000023937) #22	grtp1a (ENSACLG00000023970) #23	adprhl1 (ENSACLG00000024026) #25	dcun1d2b (ENSACLG00000024076)	TMCO3 (ENSACLG00000024096) #26	ATP4B (ENSACLG00000024118) #28	grk1a (ENSACLG00000024149) #29	ENSACLG00000024158	ENSACLG00000024163	pros1 (ENSACLG00000024181)	RASA3 (ENSACLG00000024189) #31	TPP2 (ENSACLG00000024212)	ENSACLG00000024252	mettl21e (ENSACLG00000024253)	ENSACLG00000024257	blzf1 (ENSACLG00000024263)
Lyretail cichlid	MODERN SPECIES	290	pou4f1 (ENSNBRG00000018897)	PCDH9 (ENSNBRG00000018844)	ENSNBRG00000018821	PCDH20 (ENSNBRG00000018810)	tdrd3 (ENSNBRG00000018789)	diaph3 (ENSNBRG00000018722)	ENSNBRG00000018702	ENSNBRG00000018684	ENSNBRG00000018665	pcdh17 (ENSNBRG00000018651)	ENSNBRG00000018637	lims2 (ENSNBRG00000018614)	ENSNBRG00000018594	tgfbrap1 (ENSNBRG00000018562)	cul4a (ENSNBRG00000018399) #21	ENSNBRG00000018337 #22	grtp1a (ENSNBRG00000018315) #23	TMCO3 (ENSNBRG00000018294) #26	ATP4B (ENSNBRG00000018254) #28	grk1a (ENSNBRG00000018225) #29	ENSNBRG00000018199	ENSNBRG00000018185	pros1 (ENSNBRG00000018158)	RASA3 (ENSNBRG00000018113) #31	TPP2 (ENSNBRG00000018039)	ENSNBRG00000018019	mettl21e (ENSNBRG00000018001)	ENSNBRG00000017983	ENSNBRG00000017953	blzf1 (ENSNBRG00000017924)	trmt10c (ENSNBRG00000017903)
Nile tilapia	MODERN SPECIES		RBM26 (ENSONIG00000003242)	ENSONIG00000037616	pou4f1 (ENSONIG00000038653)	PCDH9 (ENSONIG00000003239)	PCDH20 (ENSONIG00000003238)	ENSONIG00000030929	tdrd3 (ENSONIG00000003233)	diaph3 (ENSONIG00000003222)	ENSONIG00000034660	pcdh17 (ENSONIG00000003221)	ENSONIG00000003219	lims2 (ENSONIG00000003214)	ENSONIG00000035834	tgfbrap1 (ENSONIG00000003210)	cul4a (ENSONIG00000003207) #21	LAMP1 (ENSONIG00000003203) #22	grtp1a (ENSONIG00000003200) #23	adprhl1 (ENSONIG00000003194) #25	dcun1d2b (ENSONIG00000003192)	TMCO3 (ENSONIG00000003186) #26	ATP4B (ENSONIG00000003180) #28	grk1a (ENSONIG00000003174) #29	ENSONIG00000003170	gas6 (ENSONIG00000003162)	pros1 (ENSONIG00000003156)	RASA3 (ENSONIG00000003142) #31	TPP2 (ENSONIG00000003136)	METTL21C (ENSONIG00000003135)	ENSONIG00000003134	mettl21e (ENSONIG00000003133)	ENSONIG00000003129
Midas cichlid	MODERN SPECIES	533											ENSACIG00000022694	lims2 (ENSACIG00000022685)	ENSACIG00000022675	tgfbrap1 (ENSACIG00000022666)	cul4a (ENSACIG00000022636) #21	LAMP1 (ENSACIG00000022622) #22	grtp1a (ENSACIG00000022610) #23	adprhl1 (ENSACIG00000022602) #25	dcun1d2b (ENSACIG00000022592)	TMCO3 (ENSACIG00000022580) #26	ATP4B (ENSACIG00000022557) #28	grk1a (ENSACIG00000022463) #29	ENSACIG00000022444	gas6 (ENSACIG00000022420)	pros1 (ENSACIG00000022406)	RASA3 (ENSACIG00000022371) #31	TPP2 (ENSACIG00000022341)	METTL21C (ENSACIG00000022326)	ENSACIG00000022314	mettl21e (ENSACIG00000022305)	ENSACIG00000022296
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00900000143708	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT01030000234575.c.a.a.a.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Pomacentridae_A	ANCESTRAL SPECIES	28	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT01030000234575.c.a.a.a.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Amphiprion	ANCESTRAL SPECIES	37	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT01030000234575.c.a.a.a.b	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Orange clownfish	MODERN SPECIES		pou4f1 (ENSAPEG00000022986)	PCDH9 (ENSAPEG00000022943)	PCDH20 (ENSAPEG00000022914)	tdrd3 (ENSAPEG00000022810)	diaph3 (ENSAPEG00000022762)	ENSAPEG00000022741	pcdh17 (ENSAPEG00000022726)	ENSAPEG00000022717	pcdh17 (ENSAPEG00000022711)	ENSAPEG00000022683	lims2 (ENSAPEG00000022642)	ENSAPEG00000022625	ENSAPEG00000022591	tgfbrap1 (ENSAPEG00000022555)	cul4a (ENSAPEG00000022509) #21	LAMP1 (ENSAPEG00000022496) #22	grtp1a (ENSAPEG00000022481) #23	adprhl1 (ENSAPEG00000022438) #25	dcun1d2b (ENSAPEG00000022422)	TMCO3 (ENSAPEG00000022378) #26	ATP4B (ENSAPEG00000022369) #28	grk1a (ENSAPEG00000022352) #29	ENSAPEG00000022312	ENSAPEG00000022301	pros1 (ENSAPEG00000022260)	RASA3 (ENSAPEG00000022179) #31	TPP2 (ENSAPEG00000022067)	ENSAPEG00000022051	mettl21e (ENSAPEG00000022038)	ENSAPEG00000022018	ENSAPEG00000022002
Clown anemonefish	MODERN SPECIES	4									pcdh17 (ENSAOCG00000024760)	ENSAOCG00000024759	lims1 (ENSAOCG00000024756)	ENSAOCG00000024753	ENSAOCG00000024747	tgfbrap1 (ENSAOCG00000024745)	cul4a (ENSAOCG00000024741) #21	LAMP1 (ENSAOCG00000024736) #22	grtp1a (ENSAOCG00000024733) #23	adprhl1 (ENSAOCG00000024729) #25	dcun1d2b (ENSAOCG00000024727)	TMCO3 (ENSAOCG00000024719) #26	ATP4B (ENSAOCG00000024713) #28	grk1a (ENSAOCG00000024707) #29	ENSAOCG00000024680	ENSAOCG00000024677	pros1 (ENSAOCG00000024673)	RASA3 (ENSAOCG00000024671) #31
Spiny chromis	MODERN SPECIES	108										ENSAPOG00000005035	lims2 (ENSAPOG00000005000)	FBXL3 (ENSAPOG00000004955)	ENSAPOG00000004928	tgfbrap1 (ENSAPOG00000004897)	cul4a (ENSAPOG00000004830) #21	LAMP1 (ENSAPOG00000004787) #22	grtp1a (ENSAPOG00000004762) #23	adprhl1 (ENSAPOG00000004736) #25	dcun1d2b (ENSAPOG00000004673)	TMCO3 (ENSAPOG00000004655) #26	grk1a (ENSAPOG00000004612) #29	ATP4B (ENSAPOG00000004589) #28	ENSAPOG00000004494	ENSAPOG00000004463	pros1 (ENSAPOG00000004438)	RASA3 (ENSAPOG00000004364) #31	TPP2 (ENSAPOG00000004249)	METTL21C (ENSAPOG00000004117)	mettl21e (ENSAPOG00000004058)	ENSAPOG00000004036	blzf1 (ENSAPOG00000003921)
Bicolor damselfish	MODERN SPECIES	290			PCDH20 (ENSSPAG00000005368)	tdrd3 (ENSSPAG00000005342)	ENSSPAG00000005334	diaph3 (ENSSPAG00000005301)	ENSSPAG00000005287	pcdh17 (ENSSPAG00000005272)	ENSSPAG00000005256	ENSSPAG00000005247	ENSSPAG00000005206	ENSSPAG00000005184	ENSSPAG00000005139	tgfbrap1 (ENSSPAG00000005098)	cul4a (ENSSPAG00000005052) #21	LAMP1 (ENSSPAG00000005016) #22	grtp1a (ENSSPAG00000004876) #23	adprhl1 (ENSSPAG00000004841) #25	dcun1d2b (ENSSPAG00000004522)
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00900000143708	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00900000143708	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Fugu	MODERN SPECIES	4	RBM26 (ENSTRUG00000017189)	ENSTRUG00000020149	pou4f1 (ENSTRUG00000028145)	PCDH9 (ENSTRUG00000017191)	ENSTRUG00000027005	ENSTRUG00000026562	PCDH20 (ENSTRUG00000017193)	tdrd3 (ENSTRUG00000017194)	diaph3 (ENSTRUG00000017195)	pcdh17 (ENSTRUG00000017196)	ENSTRUG00000017197	ENSTRUG00000017198	ENSTRUG00000020541	ENSTRUG00000017203	cul4a (ENSTRUG00000017207) #21	LAMP1 (ENSTRUG00000020902) #22	grtp1a (ENSTRUG00000017214) #23	adprhl1 (ENSTRUG00000017215) #25	dcun1d2b (ENSTRUG00000017216)	TMCO3 (ENSTRUG00000017217) #26	grk1a (ENSTRUG00000017218) #29	ENSTRUG00000017219	gas6 (ENSTRUG00000017220)	pros1 (ENSTRUG00000017221)	RASA3 (ENSTRUG00000017222) #31	TPP2 (ENSTRUG00000017223)	ENSTRUG00000017225	mettl21e (ENSTRUG00000017226)	ENSTRUG00000017227	blzf1 (ENSTRUG00000017228)	trmt10c (ENSTRUG00000024252)
Tetraodon	MODERN SPECIES	20	RBM26 (ENSTNIG00000009468)	ENSTNIG00000009467	pou4f1 (ENSTNIG00000009466)	PCDH9 (ENSTNIG00000009465)	ENSTNIG00000008584	PCDH20 (ENSTNIG00000009464)	ENSTNIG00000009463	ENSTNIG00000009462	ENSTNIG00000009461	pcdh17 (ENSTNIG00000009460)	ENSTNIG00000009459	lims1 (ENSTNIG00000009458)	ENSTNIG00000009457	tgfbrap1 (ENSTNIG00000009456)	cul4a (ENSTNIG00000009455) #21	LAMP1 (ENSTNIG00000009454) #22	grtp1a (ENSTNIG00000001396) #23	adprhl1 (ENSTNIG00000001139) #25	dcun1d2b (ENSTNIG00000009453)	TMCO3 (ENSTNIG00000009452) #26	grk1a (ENSTNIG00000009451) #29	ENSTNIG00000009450	ENSTNIG00000009449	pros1 (ENSTNIG00000009448)	RASA3 (ENSTNIG00000006413) #31	TPP2 (ENSTNIG00000009446)	METTL21C (ENSTNIG00000009445)	ENSTNIG00000009444	mettl21e (ENSTNIG00000009443)	ENSTNIG00000001841	ENSTNIG00000009442
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00900000143708	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	82	gpc6a (ENSLBEG00000013579)	gpc5a (ENSLBEG00000013545)	efnb2b (ENSLBEG00000013315)	ENSLBEG00000013244	ENSLBEG00000013225	mrpl16 (ENSLBEG00000013193)	txnl4b (ENSLBEG00000013154)	trmt10c (ENSLBEG00000013143)	blzf1 (ENSLBEG00000013104)	ENSLBEG00000013058	ENSLBEG00000013019	mettl21e (ENSLBEG00000012994)	ENSLBEG00000012968	tgfbrap1 (ENSLBEG00000012905)	cul4a (ENSLBEG00000012847) #21	LAMP1 (ENSLBEG00000012793) #22	grtp1a (ENSLBEG00000012742) #23	adprhl1 (ENSLBEG00000012678) #25	dcun1d2b (ENSLBEG00000012612)	TMCO3 (ENSLBEG00000012504) #26	grk1a (ENSLBEG00000012439) #29	ENSLBEG00000012419	gas6 (ENSLBEG00000012383)	pros1 (ENSLBEG00000012349)	RASA3 (ENSLBEG00000012228) #31	TPP2 (ENSLBEG00000012052)	ENSLBEG00000011965	ENSLBEG00000011946	ENSLBEG00000011923	ENSLBEG00000011903	ENSLBEG00000011880
Ballan wrasse	MODERN SPECIES	961																ENSLBEG00000019142 #22
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
European seabass	MODERN SPECIES	18	ENSDLAG00005012451	ENSDLAG00005012245	RBM26 (ENSDLAG00005011212)	ENSDLAG00005011172	pou4f1 (ENSDLAG00005032736)	PCDH9 (ENSDLAG00005011113)	PCDH20 (ENSDLAG00005011104)	TDRD3 (ENSDLAG00005010902)	diaph3 (ENSDLAG00005010465)	PCDH17 (ENSDLAG00005010416)	ENSDLAG00005010407	ENSDLAG00005010330	ENSDLAG00005028262	ENSDLAG00005010293	cul4a (ENSDLAG00005008240) #21	LAMP1 (ENSDLAG00005008145) #22	grtp1a (ENSDLAG00005031884) #23	adprhl1 (ENSDLAG00005008125) #25	dcun1d2b (ENSDLAG00005032226)	TMCO3 (ENSDLAG00005007734) #26	ATP4B (ENSDLAG00005007721) #28	grk1a (ENSDLAG00005007708) #29	ENSDLAG00005007697	ENSDLAG00005007579	pros1 (ENSDLAG00005007171)	ENSDLAG00005005833 #31	ENSDLAG00005001586	ENSDLAG00005001290	mettl21e (ENSDLAG00005029210)	ENSDLAG00005024094	blzf1 (ENSDLAG00005030858)
Large yellow croaker	MODERN SPECIES	480	PTPRM (ENSLCRG00005000531)	ENSLCRG00005000520	TMEM200C (ENSLCRG00005000519)	ENSLCRG00005000435	ARHGAP28 (ENSLCRG00005000424)	PCDH20 (ENSLCRG00005000421)	tdrd3 (ENSLCRG00005000399)	diaph3 (ENSLCRG00005000351)	pcdh17 (ENSLCRG00005000307)	ENSLCRG00005000298	ENSLCRG00005000212	ENSLCRG00005000169	ENSLCRG00005023331	tgfbrap1 (ENSLCRG00005023330)	cul4a (ENSLCRG00005022972) #21	LAMP1 (ENSLCRG00005022966) #22	grtp1a (ENSLCRG00005022965) #23	adprhl1 (ENSLCRG00005022964) #25	dcun1d2b (ENSLCRG00005022962)	TMCO3 (ENSLCRG00005022951) #26	ATP4B (ENSLCRG00005022946) #28	grk1a (ENSLCRG00005022945) #29	ENSLCRG00005022944	ENSLCRG00005022943	slc7a6os (ENSLCRG00005022942)	slc7a6 (ENSLCRG00005022868)	adgrg1 (ENSLCRG00005022866)	adgrg1 (ENSLCRG00005022864)	SYAP1 (ENSLCRG00005022863)	phospho2 (ENSLCRG00005022861)	KLHL23 (ENSLCRG00005022860)
Gilthead seabream	MODERN SPECIES	18	RBM26 (ENSSAUG00010022628)	ENSSAUG00010022639	pou4f1 (ENSSAUG00010022641)	PCDH9 (ENSSAUG00010022642)	PCDH20 (ENSSAUG00010022643)	tdrd3 (ENSSAUG00010022647)	diaph3 (ENSSAUG00010022660)	pcdh17 (ENSSAUG00010022668)	ENSSAUG00010022672	ENSSAUG00010022684	ENSSAUG00010023304	ENSSAUG00010000178	ENSSAUG00010000193	tgfbrap1 (ENSSAUG00010000221)	cul4a (ENSSAUG00010000323) #21	LAMP1 (ENSSAUG00010000472) #22	grtp1a (ENSSAUG00010000477) #23	adprhl1 (ENSSAUG00010000483) #25	dcun1d2b (ENSSAUG00010000498)	TMCO3 (ENSSAUG00010000530) #26	ATP4B (ENSSAUG00010000556) #28	grk1a (ENSSAUG00010000561) #29	ENSSAUG00010000568	gas6 (ENSSAUG00010000592)	pros1 (ENSSAUG00010000723)	RASA3 (ENSSAUG00010000781) #31	TPP2 (ENSSAUG00010000874)	ENSSAUG00010000895	mettl21e (ENSSAUG00010000897)	ENSSAUG00010000899	blzf1 (ENSSAUG00010000903)
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000157981.a.a.a	ENSGT00940000153665.b.a.a	ENSGT00940000154490.a.b	ENSGT00940000156459.k	ENSGT00690000101915.i.b	ENSGT00940000161074.b	ENSGT00950000183159.b.c.a	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000155868.e	ENSGT01020000230438.B.a.b	ENSGT00390000005599	ENSGT00390000002038	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00940000157981.a.a.a	ENSGT00940000153665.b.a.a	ENSGT00940000154490.a.b	ENSGT00940000156459.k	ENSGT00690000101915.i.b	ENSGT00940000161074.b	ENSGT00950000183159.b.c.a	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000155868.e	ENSGT01020000230438.B.a.b	ENSGT00390000005599	ENSGT00390000002038	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400	ENSGT00530000063169.b.b
Lumpfish	MODERN SPECIES	18	ENSCLMG00005000550	nsun3 (ENSCLMG00005000546)	EPHA6 (ENSCLMG00005000538)	arl6 (ENSCLMG00005000532)	SLC5A7 (ENSCLMG00005000531)	kctd12.2 (ENSCLMG00005000529)	ENSCLMG00005000527	gpc6a (ENSCLMG00005000509)	gpc5a (ENSCLMG00005000504)	ENSCLMG00005000491	ENSCLMG00005000487	ENSCLMG00005000484	mrpl16 (ENSCLMG00005000482)	tgfbrap1 (ENSCLMG00005000346)	cul4a (ENSCLMG00005000175) #21	LAMP1 (ENSCLMG00005000056) #22	grtp1a (ENSCLMG00005000048) #23	adprhl1 (ENSCLMG00005000034) #25	dcun1d2b (ENSCLMG00005000010)	TMCO3 (ENSCLMG00005008224) #26	ATP4B (ENSCLMG00005008219) #28	ENSCLMG00005008218	ENSCLMG00005008075	pros1 (ENSCLMG00005007967)	RASA3 (ENSCLMG00005006144) #31	TPP2 (ENSCLMG00005006080)	ENSCLMG00005006071	mettl21e (ENSCLMG00005006070)	ENSCLMG00005006069	blzf1 (ENSCLMG00005006068)	trmt10c (ENSCLMG00005006067)
Stickleback	MODERN SPECIES	1	rrad (ENSGACG00000015391)	atp5mc3b (ENSGACG00000015390)	nsun3 (ENSGACG00000015388)	EPHA6 (ENSGACG00000015384)	arl6 (ENSGACG00000015382)	SLC5A7 (ENSGACG00000015378)	kctd12.2 (ENSGACG00000015376)	ENSGACG00000015375	gpc6a (ENSGACG00000015374)	gpc5a (ENSGACG00000015368)	ENSGACG00000015366	ENSGACG00000015365	mrpl16 (ENSGACG00000015363)	tgfbrap1 (ENSGACG00000015359)	cul4a (ENSGACG00000015356) #21	LAMP1 (ENSGACG00000015350) #22	grtp1a (ENSGACG00000015345) #23	adprhl1 (ENSGACG00000015338) #25	dcun1d2b (ENSGACG00000015337)	TMCO3 (ENSGACG00000015331) #26	ATP4B (ENSGACG00000015325) #28	grk1a (ENSGACG00000015322) #29	ENSGACG00000015319	ENSGACG00000015310	pros1 (ENSGACG00000015305)	RASA3 (ENSGACG00000015302) #31	TPP2 (ENSGACG00000015300)	ENSGACG00000015298	METTL21C (ENSGACG00000015297)	mettl21e (ENSGACG00000015294)	ENSGACG00000015292
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000157981.a.a.a	ENSGT00940000153665.b.a.a	ENSGT00940000154490.a.b	ENSGT00940000156459.k	ENSGT00690000101915.i.b	ENSGT00940000161074.b	ENSGT00950000183159.b.c.a	ENSGT01050000244897.a.b.b.a.b	ENSGT01050000244955.a.a	ENSGT00940000155868.e	ENSGT01020000230438.B.a.b	ENSGT00390000005599	ENSGT00390000002038	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Pike perch	MODERN SPECIES	44	ENSSLUG00000006384	nsun3 (ENSSLUG00000006264)	EPHA6 (ENSSLUG00000006222)	arl6 (ENSSLUG00000006214)	SLC5A7 (ENSSLUG00000006200)	kctd12.2 (ENSSLUG00000006184)	lmo7b (ENSSLUG00000006154)	ENSSLUG00000016020	gpc6a (ENSSLUG00000016007)	gpc5a (ENSSLUG00000015960)	ENSSLUG00000015862	ENSSLUG00000015851	mrpl16 (ENSSLUG00000015819)	tgfbrap1 (ENSSLUG00000015787)	cul4a (ENSSLUG00000011727) #21	LAMP1 (ENSSLUG00000011459) #22	grtp1a (ENSSLUG00000011108) #23	adprhl1 (ENSSLUG00000011082) #25	dcun1d2b (ENSSLUG00000011047)	TMCO3 (ENSSLUG00000011022) #26	ATP4B (ENSSLUG00000011007) #28	grk1a (ENSSLUG00000010999) #29	ENSSLUG00000010985	gas6 (ENSSLUG00000010706)	pros1 (ENSSLUG00000010478)	RASA3 (ENSSLUG00000010443) #31	TPP2 (ENSSLUG00000010280)	ENSSLUG00000010227	mettl21e (ENSSLUG00000010224)	ENSSLUG00000010218	ENSSLUG00000010216
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Siamese fighting fish	MODERN SPECIES	14	RBM26 (ENSBSLG00000007972)	ENSBSLG00000007874	pou4f1 (ENSBSLG00000007857)	PCDH9 (ENSBSLG00000007812)	ENSBSLG00000007709	PCDH20 (ENSBSLG00000007217)	tdrd3 (ENSBSLG00000007210)	diaph3 (ENSBSLG00000006951)	ENSBSLG00000006901	pcdh17 (ENSBSLG00000006800)	ENSBSLG00000006784	ENSBSLG00000006493	ENSBSLG00000006114	tgfbrap1 (ENSBSLG00000006105)	cul4a (ENSBSLG00000005539) #21	LAMP1 (ENSBSLG00000005368) #22	grtp1a (ENSBSLG00000005298) #23	ENSBSLG00000005241 #23	dcun1d2b (ENSBSLG00000004904)	TMCO3 (ENSBSLG00000004778) #26	ATP4B (ENSBSLG00000004558) #28	grk1a (ENSBSLG00000004557) #29	ENSBSLG00000004555	gas6 (ENSBSLG00000004522)	pros1 (ENSBSLG00000004332)	RASA3 (ENSBSLG00000003913) #31	TPP2 (ENSBSLG00000002640)	ENSBSLG00000002495	mettl21e (ENSBSLG00000002454)	ENSBSLG00000002340	blzf1 (ENSBSLG00000002289)
Climbing perch	MODERN SPECIES	16	ENSATEG00000014826	RBM26 (ENSATEG00000014718)	ENSATEG00000014681	pou4f1 (ENSATEG00000025877)	PCDH9 (ENSATEG00000014626)	ENSATEG00000028240	TDRD3 (ENSATEG00000014570)	diaph3 (ENSATEG00000014115)	pcdh17 (ENSATEG00000014054)	ENSATEG00000014045	ENSATEG00000014038	lims1 (ENSATEG00000014009)	ENSATEG00000029447	ENSATEG00000013950	cul4a (ENSATEG00000013870) #21	LAMP1 (ENSATEG00000013833) #22	grtp1a (ENSATEG00000013759) #23	adprhl1 (ENSATEG00000013739) #25	dcun1d2b (ENSATEG00000013723)	TMCO3 (ENSATEG00000013663) #26	ATP4B (ENSATEG00000013536) #28	grk1a (ENSATEG00000013307) #29	ENSATEG00000013244	ENSATEG00000013221	pros1 (ENSATEG00000013201)	ENSATEG00000013072 #31	ENSATEG00000012914	ENSATEG00000012785	mettl21e (ENSATEG00000012759)	ENSATEG00000030103	blzf1 (ENSATEG00000012613)
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000004496	RBM26 (ENSMAMG00000004375)	ENSMAMG00000004327	pou4f1 (ENSMAMG00000028317)	PCDH9 (ENSMAMG00000004031)	PCDH20 (ENSMAMG00000004021)	ENSMAMG00000025638	TDRD3 (ENSMAMG00000003998)	diaph3 (ENSMAMG00000003918)	PCDH17 (ENSMAMG00000003882)	ENSMAMG00000003861	ENSMAMG00000026445	ENSMAMG00000003778	ENSMAMG00000003714	cul4a (ENSMAMG00000003652) #21	LAMP1 (ENSMAMG00000003642) #22	grtp1a (ENSMAMG00000003632) #23	adprhl1 (ENSMAMG00000003618) #25	dcun1d2b (ENSMAMG00000025323)	ENSMAMG00000028578	TMCO3 (ENSMAMG00000003542) #26	ATP4B (ENSMAMG00000003520) #28	grk1a (ENSMAMG00000003488) #29	ENSMAMG00000003460	ENSMAMG00000003445	pros1 (ENSMAMG00000003430)	RASA3 (ENSMAMG00000003408) #31	ENSMAMG00000003239	ENSMAMG00000003393	mettl21e (ENSMAMG00000003214)	ENSMAMG00000003197
Carangaria	ANCESTRAL SPECIES	11	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Seriola	ANCESTRAL SPECIES	52							ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.a.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Greater amberjack	MODERN SPECIES	233						PCDH20 (ENSSDUG00000004580)	tdrd3 (ENSSDUG00000004594)	diaph3 (ENSSDUG00000004644)	pcdh17 (ENSSDUG00000005201)	ENSSDUG00000005216	lims1 (ENSSDUG00000005233)	FBXL3 (ENSSDUG00000005257)	ENSSDUG00000005273	tgfbrap1 (ENSSDUG00000005289)	cul4a (ENSSDUG00000005333) #21	LAMP1 (ENSSDUG00000005369) #22	grtp1a (ENSSDUG00000005384) #23	adprhl1 (ENSSDUG00000005420) #25	dcun1d2b (ENSSDUG00000005486)	TMCO3 (ENSSDUG00000005811) #26	ATP4B (ENSSDUG00000005841) #28	grk1a (ENSSDUG00000005914) #29	ENSSDUG00000005950	ENSSDUG00000005990	pros1 (ENSSDUG00000006011)	RASA3 (ENSSDUG00000006041) #31	TPP2 (ENSSDUG00000006178)	METTL21C (ENSSDUG00000006305)	mettl21e (ENSSDUG00000006363)	ENSSDUG00000006374	blzf1 (ENSSDUG00000006398)
Yellowtail amberjack	MODERN SPECIES	3074				ENSSLDG00000003195	PCDH20 (ENSSLDG00000003190)	tdrd3 (ENSSLDG00000002918)	ENSSLDG00000002777	diaph3 (ENSSLDG00000002611)	pcdh17 (ENSSLDG00000002579)	ENSSLDG00000002551	ENSSLDG00000002509	ENSSLDG00000002474	ENSSLDG00000002343	tgfbrap1 (ENSSLDG00000002258)	cul4a (ENSSLDG00000002181) #21	LAMP1 (ENSSLDG00000002164) #22	grtp1a (ENSSLDG00000002122) #23	adprhl1 (ENSSLDG00000002109) #25	dcun1d2b (ENSSLDG00000001833)	TMCO3 (ENSSLDG00000001750) #26	ATP4B (ENSSLDG00000001730) #28	grk1a (ENSSLDG00000001686) #29	ENSSLDG00000001675	gas6 (ENSSLDG00000001601)	pros1 (ENSSLDG00000001528)	RASA3 (ENSSLDG00000001433) #31	TPP2 (ENSSLDG00000001249)	ENSSLDG00000001226	METTL21C (ENSSLDG00000001160)	mettl21e (ENSSLDG00000001148)	ENSSLDG00000001074
Barramundi perch	MODERN SPECIES	96	cyp27c1 (ENSLCAG00010008713)	RBM26 (ENSLCAG00010008730)	ENSLCAG00010008750	pou4f1 (ENSLCAG00010008784)	PCDH9 (ENSLCAG00010008790)	ENSLCAG00010008799	PCDH20 (ENSLCAG00010008803)	tdrd3 (ENSLCAG00010008812)	diaph3 (ENSLCAG00010009004)	pcdh17 (ENSLCAG00010009773)	ENSLCAG00010009774	ENSLCAG00010009775	FBXL3 (ENSLCAG00010009786)	tgfbrap1 (ENSLCAG00010009793)	cul4a (ENSLCAG00010009830) #21	LAMP1 (ENSLCAG00010009878) #22	grtp1a (ENSLCAG00010009882) #23	adprhl1 (ENSLCAG00010009886) #25	dcun1d2b (ENSLCAG00010009892)	TMCO3 (ENSLCAG00010009920) #26	ATP4B (ENSLCAG00010009957) #28	grk1a (ENSLCAG00010009964) #29	ENSLCAG00010009976	ENSLCAG00010009988	pros1 (ENSLCAG00010010000)	RASA3 (ENSLCAG00010010073) #31	TPP2 (ENSLCAG00010010226)	ENSLCAG00010010298	mettl21e (ENSLCAG00010010304)	ENSLCAG00010010310	blzf1 (ENSLCAG00010010314)
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00390000002204	ENSGT00950000182905.a.b	ENSGT00510000046929.a	ENSGT00390000013512	ENSGT00940000162154	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000157767	ENSGT00940000156894.c	ENSGT00650000093443	ENSGT00940000153518.d.b.b.w.b	ENSGT00940000159395.d	ENSGT00530000063596.A.i	ENSGT00940000156905 #21	ENSGT00950000182899.B.a.i #22	ENSGT00940000154927.c.a #23	ENSGT00530000063627.a #25	ENSGT00940000157453.r	ENSGT00390000001394 #26	ENSGT01030000234579.B.b #28	ENSGT00940000159927.d.a #29	ENSGT00940000166849	ENSGT00940000161271	ENSGT00940000154035.b	ENSGT00940000157953.b #31	ENSGT00390000014623	ENSGT00940000156596.c	ENSGT00940000159229	ENSGT00940000163631	ENSGT00390000009400
Tongue sole	MODERN SPECIES	15	BAZ2B (ENSCSEG00000000800)	diaph3 (ENSCSEG00000000696)	tdrd3 (ENSCSEG00000000670)	PCDH20 (ENSCSEG00000000665)	ENSCSEG00000000660	ENSCSEG00000000647	pou4f1 (ENSCSEG00000000641)	PCDH9 (ENSCSEG00000000632)	ENSCSEG00000000626	pcdh17 (ENSCSEG00000000621)	ENSCSEG00000000615	lims1 (ENSCSEG00000000607)	ENSCSEG00000000599	tgfbrap1 (ENSCSEG00000000575)	cul4a (ENSCSEG00000000560) #21	ENSCSEG00000000511 #22	grtp1a (ENSCSEG00000000499) #23	MMP15 (ENSCSEG00000000492)	dhcr7 (ENSCSEG00000000484)	ctrb.3 (ENSCSEG00000000477)	ENSCSEG00000000461	ENSCSEG00000000409	DPY19L3 (ENSCSEG00000000368)	ZNF507 (ENSCSEG00000000352)	tshz3b (ENSCSEG00000000344)	ZNF536 (ENSCSEG00000000339)	ccne1 (ENSCSEG00000000327)	ENSCSEG00000000324	si:ch211-260e23.8 (ENSCSEG00000000323)	efcab2 (ENSCSEG00000000319)	ENSCSEG00000000310
Turbot	MODERN SPECIES	17	ENSSMAG00000011900	RBM26 (ENSSMAG00000011760)	ENSSMAG00000011754	ENSSMAG00000011725	pou4f1 (ENSSMAG00000011724)	PCDH9 (ENSSMAG00000011700)	ENSSMAG00000032592	TDRD3 (ENSSMAG00000011677)	diaph3 (ENSSMAG00000011516)	pcdh17 (ENSSMAG00000011495)	ENSSMAG00000011465	lims1 (ENSSMAG00000011392)	ENSSMAG00000022065	ENSSMAG00000011317	cul4a (ENSSMAG00000011265) #21	LAMP1 (ENSSMAG00000011246) #22	grtp1a (ENSSMAG00000011236) #23	adprhl1 (ENSSMAG00000011222) #25	dcun1d2b (ENSSMAG00000011178)	TMCO3 (ENSSMAG00000011028) #26	paqr5b (ENSSMAG00000011014)	glceb (ENSSMAG00000010870)	anp32a (ENSSMAG00000025689)	CORO2B (ENSSMAG00000025688)	itga11a (ENSSMAG00000010760)	ENSSMAG00000010749	ENSSMAG00000010718	ENSSMAG00000010699	ENSSMAG00000010669	ENSSMAG00000010613	trip4 (ENSSMAG00000010539)
Pinecone sodierfish	MODERN SPECIES	17	RBM26 (ENSMMDG00005009956)	ENSMMDG00005009994	pou4f1 (ENSMMDG00005009997)	PCDH9 (ENSMMDG00005010001)	ENSMMDG00005010003	PCDH20 (ENSMMDG00005010006)	tdrd3 (ENSMMDG00005010014)	ENSMMDG00005010112	diaph3 (ENSMMDG00005010172)	pcdh17 (ENSMMDG00005013059)	ENSMMDG00005013060	lims1 (ENSMMDG00005013087)	ENSMMDG00005014204	tgfbrap1 (ENSMMDG00005014212)	cul4a (ENSMMDG00005014219) #21	LAMP1 (ENSMMDG00005014353) #22	grtp1a (ENSMMDG00005014358) #23	adprhl1 (ENSMMDG00005014362) #25	dcun1d2b (ENSMMDG00005014372)	TMCO3 (ENSMMDG00005014455) #26	ATP4B (ENSMMDG00005014472) #28	grk1a (ENSMMDG00005014474) #29	ENSMMDG00005014479	ENSMMDG00005014491	pros1 (ENSMMDG00005014681)	RASA3 (ENSMMDG00005014852) #31	TPP2 (ENSMMDG00005015081)	METTL21C (ENSMMDG00005015126)	mettl21e (ENSMMDG00005015130)	ENSMMDG00005015135	blzf1 (ENSMMDG00005015138)
Clupeocephala	ANCESTRAL SPECIES	58	ENSGT00530000063528.B	ENSGT00940000154517.mb	ENSGT00940000155202	ENSGT00520000055625.a	ENSGT00940000164470.a	ENSGT00950000182827.A	ENSGT00940000158556	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000157231.b	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	98						ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000157231.b	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00940000158618	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Percomorphaceae	ANCESTRAL SPECIES	23	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Tiger tail seahorse	MODERN SPECIES	440	gpr161b (ENSHCOG00000004391)	dcaf6 (ENSHCOG00000004359)	nxpe3 (ENSHCOG00000004332)	ENSHCOG00000004309	ENSHCOG00000004306	rpl24 (ENSHCOG00000004302)	mpc2b (ENSHCOG00000004294)	nxpe3 (ENSHCOG00000004287)	nxpe3 (ENSHCOG00000004270)	me3 (ENSHCOG00000004262)	ENSHCOG00000004252	ildr1b (ENSHCOG00000004243)	ildr2 (ENSHCOG00000004233)	ENSHCOG00000004183	pou2f1b (ENSHCOG00000004173)	lamp1b (ENSHCOG00000004146) #22	dcun1d2a (ENSHCOG00000004132)	tfdp1a (ENSHCOG00000004113) #27	grk1a (ENSHCOG00000004087) #29	mettl21cb (ENSHCOG00000004066)	jam2b (ENSHCOG00000004042)	st6gal2a (ENSHCOG00000004006)	tmtops2b (ENSHCOG00000003998)	uxs1 (ENSHCOG00000003990)	ecrg4a (ENSHCOG00000003963)	nck2a (ENSHCOG00000003956)	FHL2 (ENSHCOG00000003948)	si:dkeyp-118h3.6 (ENSHCOG00000003943)	GPR45 (ENSHCOG00000003938)	ENSHCOG00000003928	tmem182a (ENSHCOG00000003914)
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Pomacentridae	ANCESTRAL SPECIES	29	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Pomacentridae_A	ANCESTRAL SPECIES	29	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Amphiprion	ANCESTRAL SPECIES	24	ENSGT00940000159616	ENSGT00390000014242.k.c	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00970000193381.a.a.a.a.b.b.a.b.e	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Orange clownfish	MODERN SPECIES	3	ENSAPEG00000007861	OTC (ENSAPEG00000007840)	gpr161b (ENSAPEG00000007822)	ENSAPEG00000007807	ENSAPEG00000007794	mpc2b (ENSAPEG00000007773)	rpl24 (ENSAPEG00000007741)	ENSAPEG00000007718	nxpe3 (ENSAPEG00000007710)	me3 (ENSAPEG00000007656)	ildr1b (ENSAPEG00000007639)	ildr2 (ENSAPEG00000007611)	ENSAPEG00000007598	pou2f1b (ENSAPEG00000007532)	ENSAPEG00000007502	lamp1b (ENSAPEG00000007472) #22	grtp1b (ENSAPEG00000007446) #23	dcun1d2a (ENSAPEG00000007417)	tfdp1a (ENSAPEG00000007359) #27	grk1a (ENSAPEG00000007350) #29	mettl21cb (ENSAPEG00000007331)	jam2b (ENSAPEG00000007298)	ENSAPEG00000007265	tmtops2b (ENSAPEG00000007230)	ENSAPEG00000007212	ENSAPEG00000007207	uxs1 (ENSAPEG00000007185)	nck2a (ENSAPEG00000007168)	FHL2 (ENSAPEG00000007116)	ENSAPEG00000007078	si:dkeyp-118h3.6 (ENSAPEG00000007056)
Clown anemonefish	MODERN SPECIES	396																lamp1b (ENSAOCG00000016403) #22	GRTP1 (ENSAOCG00000016431) #23	dcun1d2a (ENSAOCG00000016456)	tfdp1a (ENSAOCG00000016489) #27
Spiny chromis	MODERN SPECIES	504	srpx (ENSAPOG00000007919)	ENSAPOG00000007963	OTC (ENSAPOG00000008021)	gpr161b (ENSAPOG00000008056)	dcaf6 (ENSAPOG00000008108)	mpc2b (ENSAPOG00000008148)	rpl24 (ENSAPOG00000008183)	ENSAPOG00000008206	nxpe3 (ENSAPOG00000008219)	me3 (ENSAPOG00000008289)	ildr1b (ENSAPOG00000008303)	ildr2 (ENSAPOG00000008336)	ENSAPOG00000000220	pou2f1b (ENSAPOG00000008392)	ENSAPOG00000008409	lamp1b (ENSAPOG00000008417) #22	grtp1b (ENSAPOG00000001132) #23	dcun1d2a (ENSAPOG00000008487)	tfdp1a (ENSAPOG00000008568) #27	grk1a (ENSAPOG00000008583) #29	mettl21cb (ENSAPOG00000008590)	ENSAPOG00000008598	jam2b (ENSAPOG00000008626)	ENSAPOG00000008654	tmtops2b (ENSAPOG00000008680)	uxs1 (ENSAPOG00000008696)	ecrg4a (ENSAPOG00000008713)	ENSAPOG00000008726
Bicolor damselfish	MODERN SPECIES	291	SYTL5 (ENSSPAG00000005896)	srpx (ENSSPAG00000005947)	ENSSPAG00000005972	OTC (ENSSPAG00000005999)	gpr161b (ENSSPAG00000006038)	dcaf6 (ENSSPAG00000006077)	mpc2b (ENSSPAG00000006155)	rpl24 (ENSSPAG00000006170)	cep97 (ENSSPAG00000006188)	nxpe3 (ENSSPAG00000006266)	me3 (ENSSPAG00000006275)	ildr1b (ENSSPAG00000006318)	ildr2 (ENSSPAG00000006336)	pou2f1b (ENSSPAG00000006360)	ENSSPAG00000006409	lamp1b (ENSSPAG00000006429) #22	grtp1b (ENSSPAG00000006445) #23	dcun1d2a (ENSSPAG00000006498)	tfdp1a (ENSSPAG00000006545) #27	grk1a (ENSSPAG00000006586) #29	mettl21cb (ENSSPAG00000006612)	ENSSPAG00000006631	jam2b (ENSSPAG00000006640)	ENSSPAG00000006669	tmtops2b (ENSSPAG00000006682)	uxs1 (ENSSPAG00000006703)	ecrg4a (ENSSPAG00000006723)	ENSSPAG00000006736	nck2a (ENSSPAG00000006745)	ENSSPAG00000006754	FHL2 (ENSSPAG00000006760)
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000157849.n.d.b #14	ENSGT00940000162479.b	ENSGT00940000155360.B.l #9	ENSGT00950000182974.b	ENSGT00940000156374	ENSGT00390000015645	ENSGT00940000163829	ENSGT00390000010868	ENSGT00940000163031.b.a.b	ENSGT00940000175825	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000157874.q.b #15	ENSGT00940000157849.n.d.b #14	ENSGT00940000162479.b	ENSGT00940000155360.B.l #9	ENSGT00950000182974.b	ENSGT00940000156374	ENSGT00390000015645	ENSGT00940000163829	ENSGT00390000010868	ENSGT00940000163031.b.a.b	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000157874.q.b #15	ENSGT00940000157849.n.d.b #14	ENSGT00940000162479.b	ENSGT00940000155360.B.l #9	ENSGT00940000178426	ENSGT00940000156374	ENSGT00390000015645	ENSGT00940000163829	ENSGT00390000010868	ENSGT00940000163031.b.a.b	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Haplochromini	ANCESTRAL SPECIES	29	ENSGT00940000157874.q.b #15	ENSGT00940000157849.n.d.b #14	ENSGT00940000162479.b	ENSGT00940000155360.B.l #9	ENSGT00940000178426	ENSGT00940000156374	ENSGT00390000015645	ENSGT00940000163829	ENSGT00390000010868	ENSGT00940000163031.b.a.b	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Haplochromini_A	ANCESTRAL SPECIES	31	ENSGT00940000157874.q.b #15	ENSGT00940000157849.n.d.b #14	ENSGT00940000162479.b	ENSGT00940000155360.B.l #9	ENSGT00940000178426	ENSGT00940000156374	ENSGT00390000015645	ENSGT00940000163829	ENSGT00390000010868	ENSGT00940000163031.b.a.b	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Haplochromini_B	ANCESTRAL SPECIES	17	ENSGT00940000157874.q.b #15	ENSGT00940000157849.n.d.b #14	ENSGT00940000162479.b	ENSGT00940000155360.B.l #9	ENSGT00940000178426	ENSGT00940000156374	ENSGT00390000015645	ENSGT00940000163829	ENSGT00390000010868	ENSGT00940000163031.b.a.b	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Zebra mbuna	MODERN SPECIES	1098	MCF2L (ENSMZEG00005021949) #15	ATP11A (ENSMZEG00005021983) #14	sox1a (ENSMZEG00005022003)	arhgef7a (ENSMZEG00005022013) #9	ENSMZEG00005022025	rev1 (ENSMZEG00005022029)	txndc9 (ENSMZEG00005022034)	mrpl30 (ENSMZEG00005022036)	mitd1 (ENSMZEG00005022038)	ENSMZEG00005022041	ildr1b (ENSMZEG00005022044)	ildr2 (ENSMZEG00005022047)	ENSMZEG00005022051	pou2f1b (ENSMZEG00005022060)	ENSMZEG00005022076	lamp1b (ENSMZEG00005022082) #22	grtp1b (ENSMZEG00005022085) #23	dcun1d2a (ENSMZEG00005022093)	tfdp1a (ENSMZEG00005022098) #27	grk1a (ENSMZEG00005022103) #29	mettl21cb (ENSMZEG00005022107)	ENSMZEG00005022111	jam2b (ENSMZEG00005022113)	st6gal2a (ENSMZEG00005022119)	ENSMZEG00005022123	tmtops2b (ENSMZEG00005022124)	uxs1 (ENSMZEG00005022125)	ecrg4a (ENSMZEG00005022131)	ENSMZEG00005022133	nck2a (ENSMZEG00005022136)	FHL2 (ENSMZEG00005022139)
Eastern happy	MODERN SPECIES	7	ATP11A (ENSACLG00000001016) #14	ENSACLG00000001148	sox1a (ENSACLG00000001158)	arhgef7a (ENSACLG00000001178) #9	ENSACLG00000001333	rev1 (ENSACLG00000001351)	txndc9 (ENSACLG00000001392)	mrpl30 (ENSACLG00000001506)	mitd1 (ENSACLG00000001515)	ENSACLG00000001541	ildr1b (ENSACLG00000001571)	ildr2 (ENSACLG00000001592)	ENSACLG00000001621	pou2f1b (ENSACLG00000001697)	ENSACLG00000001810	lamp1b (ENSACLG00000001842) #22	grtp1b (ENSACLG00000001890) #23	dcun1d2a (ENSACLG00000001916)	tfdp1a (ENSACLG00000001941) #27	grk1a (ENSACLG00000002001) #29	mettl21cb (ENSACLG00000002034)	ENSACLG00000002043	jam2b (ENSACLG00000002049)	ENSACLG00000002058	st6gal2a (ENSACLG00000002133)	ENSACLG00000002151	tmtops2b (ENSACLG00000002156)	uxs1 (ENSACLG00000002184)	ecrg4a (ENSACLG00000002205)	ENSACLG00000002219	nck2a (ENSACLG00000002227)
P. nyererei	MODERN SPECIES	350	MCF2L (ENSPNYG00000013785) #15	ATP11A (ENSPNYG00000013891) #14	sox1a (ENSPNYG00000014161)	arhgef7a (ENSPNYG00000014185) #9	ENSPNYG00000014214	rev1 (ENSPNYG00000014241)	txndc9 (ENSPNYG00000014292)	mrpl30 (ENSPNYG00000014319)	mitd1 (ENSPNYG00000014335)	ENSPNYG00000014359	ildr1b (ENSPNYG00000014365)	ildr2 (ENSPNYG00000014387)	ENSPNYG00000014440	pou2f1b (ENSPNYG00000014491)	ENSPNYG00000014522	lamp1b (ENSPNYG00000014527) #22	grtp1b (ENSPNYG00000014544) #23	dcun1d2a (ENSPNYG00000014568)	tfdp1a (ENSPNYG00000014583) #27	grk1a (ENSPNYG00000014607) #29	mettl21cb (ENSPNYG00000014627)	jam2b (ENSPNYG00000014651)	st6gal2a (ENSPNYG00000014666)	tmtops2b (ENSPNYG00000014676)	uxs1 (ENSPNYG00000014694)	ecrg4a (ENSPNYG00000014718)	ENSPNYG00000014726	nck2a (ENSPNYG00000014751)	FHL2 (ENSPNYG00000014777)	si:dkeyp-118h3.6 (ENSPNYG00000014795)	GPR45 (ENSPNYG00000014812)
Burton s mouthbrooder	MODERN SPECIES	602	MCF2L (ENSHBUG00000005842) #15	ATP11A (ENSHBUG00000005772) #14	sox1a (ENSHBUG00000005534)	arhgef7a (ENSHBUG00000005520) #9	ENSHBUG00000005477	rev1 (ENSHBUG00000001097)	ENSHBUG00000005408	mrpl30 (ENSHBUG00000005392)	mitd1 (ENSHBUG00000005386)	ENSHBUG00000005358	ildr1b (ENSHBUG00000000134)	ildr2 (ENSHBUG00000005335)	ENSHBUG00000005310	pou2f1b (ENSHBUG00000005279)	ENSHBUG00000005179	lamp1b (ENSHBUG00000005162) #22	grtp1b (ENSHBUG00000005151) #23	dcun1d2a (ENSHBUG00000005110)	tfdp1a (ENSHBUG00000005084) #27	grk1a (ENSHBUG00000005053) #29	mettl21cb (ENSHBUG00000005022)	ENSHBUG00000004994	jam2b (ENSHBUG00000005010)
Lyretail cichlid	MODERN SPECIES	303	rcbtb1 (ENSNBRG00000003449)	ENSNBRG00000003497	ATP11A (ENSNBRG00000003607) #14	sox1a (ENSNBRG00000003701)	arhgef7a (ENSNBRG00000003705) #9	rev1 (ENSNBRG00000003777)	txndc9 (ENSNBRG00000003903)	mrpl30 (ENSNBRG00000003924)	mitd1 (ENSNBRG00000003932)	ENSNBRG00000003962	ildr1b (ENSNBRG00000003969)	ildr2 (ENSNBRG00000003988)	ENSNBRG00000004045	pou2f1b (ENSNBRG00000004114)	ENSNBRG00000004198	lamp1b (ENSNBRG00000004215) #22	grtp1b (ENSNBRG00000004229) #23	dcun1d2a (ENSNBRG00000004260)	tfdp1a (ENSNBRG00000004270) #27	grk1a (ENSNBRG00000004323) #29	mettl21cb (ENSNBRG00000004347)	jam2b (ENSNBRG00000004373)	st6gal2a (ENSNBRG00000004445)	tmtops2b (ENSNBRG00000004460)	uxs1 (ENSNBRG00000004485)	ecrg4a (ENSNBRG00000004602)	ENSNBRG00000004617	nck2a (ENSNBRG00000004625)	FHL2 (ENSNBRG00000004639)	si:dkeyp-118h3.6 (ENSNBRG00000004648)	GPR45 (ENSNBRG00000004683)
Nile tilapia	MODERN SPECIES	7	ENSONIG00000006637	MCF2L (ENSONIG00000006622) #15	ATP11A (ENSONIG00000006612) #14	arhgef7a (ENSONIG00000014144) #9	ENSONIG00000014151	rev1 (ENSONIG00000014152)	txndc9 (ENSONIG00000042716)	mrpl30 (ENSONIG00000039700)	mitd1 (ENSONIG00000014171)	ENSONIG00000030615	ildr1b (ENSONIG00000014174)	ildr2 (ENSONIG00000014179)	ENSONIG00000014182	pou2f1b (ENSONIG00000014184)	ENSONIG00000031362	lamp1b (ENSONIG00000041007) #22	grtp1b (ENSONIG00000014191) #23	ENSONIG00000033155	dcun1d2a (ENSONIG00000014193)	tfdp1a (ENSONIG00000014194) #27	grk1a (ENSONIG00000014200) #29	mettl21cb (ENSONIG00000014204)	ENSONIG00000036838	jam2b (ENSONIG00000014209)	st6gal2a (ENSONIG00000014212)	tmtops2b (ENSONIG00000014214)	uxs1 (ENSONIG00000014216)	ecrg4a (ENSONIG00000014218)	ENSONIG00000033459	nck2a (ENSONIG00000014219)	FHL2 (ENSONIG00000042852)
Midas cichlid	MODERN SPECIES	486	rcbtb1 (ENSACIG00000022200)	MCF2L (ENSACIG00000022225) #15	ATP11A (ENSACIG00000022256) #14	sox1a (ENSACIG00000022280)	arhgef7a (ENSACIG00000022288) #9	rev1 (ENSACIG00000022317)	txndc9 (ENSACIG00000022348)	mrpl30 (ENSACIG00000022360)	mitd1 (ENSACIG00000022399)	ENSACIG00000022432	ildr1b (ENSACIG00000022440)	ildr2 (ENSACIG00000022464)	ENSACIG00000022491	pou2f1b (ENSACIG00000022501)	ENSACIG00000022561	lamp1b (ENSACIG00000022570) #22	grtp1b (ENSACIG00000022575) #23	dcun1d2a (ENSACIG00000022583)	tfdp1a (ENSACIG00000022588) #27	grk1a (ENSACIG00000022613) #29	mettl21cb (ENSACIG00000022739)	jam2b (ENSACIG00000022748)	ENSACIG00000022759	tmtops2b (ENSACIG00000022764)	uxs1 (ENSACIG00000022771)	ecrg4a (ENSACIG00000022778)	ENSACIG00000022781	nck2a (ENSACIG00000022783)	FHL2 (ENSACIG00000022788)	si:dkeyp-118h3.6 (ENSACIG00000022796)	GPR45 (ENSACIG00000022803)
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Oryzias	ANCESTRAL SPECIES	10	ENSGT00940000157028	ENSGT00940000165604.b	ENSGT00940000165376	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000154633.id.a	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a.y	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b	ENSGT00940000164385.a.a.a.a	ENSGT00390000017581.b.a
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT00940000157028	ENSGT00940000165604.b	ENSGT00940000165376	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000154633.id.a	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a.y	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b.e #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b	ENSGT00940000164385.a.a.a.a	ENSGT00390000017581.b.a
Indian medaka	MODERN SPECIES	18	ENSOMEG00000009822	ENSOMEG00000009891	ENSOMEG00000009956	mpc2b (ENSOMEG00000009993)	rpl24 (ENSOMEG00000010034)	il17d (ENSOMEG00000010050)	eef1akmt1 (ENSOMEG00000010074)	cep97 (ENSOMEG00000010128)	me3 (ENSOMEG00000010145)	nxpe3 (ENSOMEG00000010159)	me3 (ENSOMEG00000010229)	ildr1b (ENSOMEG00000010265)	ildr2 (ENSOMEG00000010332)	ENSOMEG00000010363	pou2f1b (ENSOMEG00000000766)	lamp1b (ENSOMEG00000010496) #22	grtp1b (ENSOMEG00000010514) #23	dcun1d2a (ENSOMEG00000010554)	tfdp1a (ENSOMEG00000010606) #27	grk1a (ENSOMEG00000010633) #29	jam2b (ENSOMEG00000010652)	st6gal2a (ENSOMEG00000010676)	tmtops2b (ENSOMEG00000010705)	uxs1 (ENSOMEG00000010779)	ecrg4a (ENSOMEG00000010822)	nck2a (ENSOMEG00000010876)	FHL2 (ENSOMEG00000010894)	si:dkeyp-118h3.6 (ENSOMEG00000010912)	GPR45 (ENSOMEG00000010925)	ENSOMEG00000010934	tmem182a (ENSOMEG00000010949)
Javanese ricefish	MODERN SPECIES	13	ENSOJAG00000003856	ENSOJAG00000004044	ENSOJAG00000004128	ENSOJAG00000004469	mpc2b (ENSOJAG00000004762)	rpl24 (ENSOJAG00000004798)	cep97 (ENSOJAG00000004862)	nxpe3 (ENSOJAG00000004943)	me3 (ENSOJAG00000005176)	ildr1b (ENSOJAG00000006050)	ENSOJAG00000006076	ENSOJAG00000006112	ENSOJAG00000006274	ENSOJAG00000006301	pou2f1b (ENSOJAG00000006335)	lamp1b (ENSOJAG00000006604) #22	ENSOJAG00000006626 #23	grtp1b (ENSOJAG00000006635) #23	dcun1d2a (ENSOJAG00000006689)	tfdp1a (ENSOJAG00000006900) #27	grk1a (ENSOJAG00000006990) #29	jam2b (ENSOJAG00000007016)	st6gal2a (ENSOJAG00000007062)	tmtops2b (ENSOJAG00000007091)	uxs1 (ENSOJAG00000007195)	ecrg4a (ENSOJAG00000008000)	nck2a (ENSOJAG00000008032)	FHL2 (ENSOJAG00000008063)	si:dkeyp-118h3.6 (ENSOJAG00000008168)	GPR45 (ENSOJAG00000008179)	ENSOJAG00000008192
Oryzias_a	ANCESTRAL SPECIES	36	ENSGT00730000111087	ENSGT00940000165376	ENSGT00530000063927.a.b	ENSGT00940000157559	ENSGT00940000154633.id.a	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00940000180737	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a.y	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b	ENSGT00940000164385.a.a.a.a	ENSGT00390000017581.b.a
Chinese medaka	MODERN SPECIES	1125												ildr1b (ENSOSIG00000020067)	ildr2 (ENSOSIG00000020066)	ENSOSIG00000020062	pou2f1b (ENSOSIG00000020053)	lamp1b (ENSOSIG00000020042) #22	grtp1b (ENSOSIG00000020039) #23	dcun1d2a (ENSOSIG00000020007)	tfdp1a (ENSOSIG00000019993) #27	grk1a (ENSOSIG00000019987) #29	ENSOSIG00000019985
Japanese Medaka HdrR	MODERN SPECIES	13	ENSORLG00000012855	ENSORLG00000022779	ENSORLG00000029313	ENSORLG00000012818	ENSORLG00000012779	mpc2b (ENSORLG00000012767)	rpl24 (ENSORLG00000012759)	ENSORLG00000024100	cep97 (ENSORLG00000012748)	nxpe3 (ENSORLG00000029535)	me3 (ENSORLG00000003470)	ildr1b (ENSORLG00000012732)	ildr2 (ENSORLG00000012725)	ENSORLG00000012710	pou2f1b (ENSORLG00000012704)	lamp1b (ENSORLG00000012668) #22	grtp1b (ENSORLG00000012661) #23	dcun1d2a (ENSORLG00000023724)	tfdp1a (ENSORLG00000012628) #27	GRK1 (ENSORLG00000012586) #29	ENSORLG00000024699	jam2b (ENSORLG00000012572)	st6gal2a (ENSORLG00000012556)	tmtops2b (ENSORLG00000012534)	ENSORLG00000027753	uxs1 (ENSORLG00000012524)	ecrg4a (ENSORLG00000026630)	nck2a (ENSORLG00000012499)	FHL2 (ENSORLG00000012482)	GPR45 (ENSORLG00000022352)	si:dkeyp-118h3.6 (ENSORLG00000012460)
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00940000158618	ENSGT00940000160302	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Mangrove rivulus	MODERN SPECIES	15	SYTL5 (ENSKMAG00000022118)	srpx (ENSKMAG00000022123)	OTC (ENSKMAG00000022126)	gpr161b (ENSKMAG00000022128)	dcaf6 (ENSKMAG00000022131)	mpc2b (ENSKMAG00000000168)	rpl24 (ENSKMAG00000000219)	ENSKMAG00000000242	nxpe3 (ENSKMAG00000000269)	me3 (ENSKMAG00000000282)	ildr1b (ENSKMAG00000000366)	ildr2 (ENSKMAG00000000375)	ENSKMAG00000000391	pou2f1b (ENSKMAG00000000503)	ENSKMAG00000000541	lamp1b (ENSKMAG00000000552) #22	grtp1b (ENSKMAG00000000562) #23	dcun1d2a (ENSKMAG00000000616)	tfdp1a (ENSKMAG00000000634) #27	grk1a (ENSKMAG00000000709) #29	mettl21cb (ENSKMAG00000000746)	ENSKMAG00000000759	jam2b (ENSKMAG00000000765)	st6gal2a (ENSKMAG00000000782)	tmtops2b (ENSKMAG00000000796)	uxs1 (ENSKMAG00000000837)	ecrg4a (ENSKMAG00000000853)	nck2a (ENSKMAG00000000872)	FHL2 (ENSKMAG00000000896)	si:dkeyp-118h3.6 (ENSKMAG00000000929)	GPR45 (ENSKMAG00000000936)
Turquoise killifish	MODERN SPECIES	1623	SYTL5 (ENSNFUG00015004794)	ENSNFUG00015022758	SRPX (ENSNFUG00015022745)	GPR161 (ENSNFUG00015022724)	DCAF6 (ENSNFUG00015021341)	BRP44 (ENSNFUG00015021310)	rpl24 (ENSNFUG00015021304)	cep97 (ENSNFUG00015021303)	NXPE3 (ENSNFUG00015021302)	me3 (ENSNFUG00015021277)	ildr1b (ENSNFUG00015021275)	ildr2 (ENSNFUG00015021274)	ENSNFUG00015021271	ENSNFUG00015021269	POU2F1B (ENSNFUG00015021264)	lamp1b (ENSNFUG00015021261) #22	grtp1b (ENSNFUG00015021260) #23	RP42-PEN (ENSNFUG00015021254)	TFDP1A (ENSNFUG00015021253) #27	grk1a (ENSNFUG00015021250) #29	mettl21cb (ENSNFUG00015021247)	ENSNFUG00015021245	jam2b (ENSNFUG00015021242)	ST6GAL2 (ENSNFUG00015021237)	Nfu_g_1_005948 (ENSNFUG00015021234)	UXS1 (ENSNFUG00015021211)	C2ORF40 (ENSNFUG00015021207)	NCK2 (ENSNFUG00015021206)	FHL2 (ENSNFUG00015021201)	si:dkeyp-118h3.6 (ENSNFUG00015021199)	GPR45 (ENSNFUG00015021196)
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
NAME_4	ANCESTRAL SPECIES	25	ENSGT00940000158618	ENSGT00940000160302	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s.f	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Mummichog	MODERN SPECIES	2211	srpx (ENSFHEG00000000726)	OTC (ENSFHEG00000014260)	gpr161b (ENSFHEG00000014236)	dcaf6 (ENSFHEG00000014215)	mpc2b (ENSFHEG00000014184)	rpl24 (ENSFHEG00000014168)	ENSFHEG00000000622	cep97 (ENSFHEG00000014151)	nxpe3 (ENSFHEG00000014140)	me3 (ENSFHEG00000014126)	ildr1b (ENSFHEG00000014096)	ildr2 (ENSFHEG00000014081)	ENSFHEG00000014050	pou2f1b (ENSFHEG00000014004)	ENSFHEG00000013979	lamp1b (ENSFHEG00000013969) #22	grtp1b (ENSFHEG00000013959) #23	dcun1d2a (ENSFHEG00000013928)	tfdp1a (ENSFHEG00000013896) #27	grk1a (ENSFHEG00000013842) #29	mettl21cb (ENSFHEG00000013195)	ENSFHEG00000013185	jam2b (ENSFHEG00000013179)	st6gal2a (ENSFHEG00000013166)	tmtops2b (ENSFHEG00000000300)	uxs1 (ENSFHEG00000013125)	ecrg4a (ENSFHEG00000013118)	nck2a (ENSFHEG00000013112)	FHL2 (ENSFHEG00000000297)	si:dkeyp-118h3.6 (ENSFHEG00000013093)	GPR45 (ENSFHEG00000013044)
Sheepshead minnow	MODERN SPECIES	1024		slc9a2 (ENSCVAG00000017981)	inpp4aa (ENSCVAG00000018119)	si:dkey-4e7.3 (ENSCVAG00000018142)	si:dkey-4e7.3 (ENSCVAG00000018172)	coa5 (ENSCVAG00000018174)	MGAT4A (ENSCVAG00000018256)	creg2 (ENSCVAG00000018271)	ENSCVAG00000018298	mitd1 (ENSCVAG00000018324)	mrpl30 (ENSCVAG00000018330)	txndc9 (ENSCVAG00000018343)	rev1 (ENSCVAG00000018356)	pou2f1b (ENSCVAG00000018375)	ENSCVAG00000018380	lamp1b (ENSCVAG00000018388) #22	grtp1b (ENSCVAG00000018440) #23	DCUN1D2 (ENSCVAG00000018470)
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Poecilia	ANCESTRAL SPECIES	13	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
NAME_6	ANCESTRAL SPECIES	49	ENSGT00940000158618	ENSGT00940000160302	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Amazon molly	MODERN SPECIES	321	srpx (ENSPFOG00000014216)	ENSPFOG00000014293	OTC (ENSPFOG00000014360)	gpr161b (ENSPFOG00000014435)	OTC (ENSPFOG00000014396)	dcaf6 (ENSPFOG00000014465)	mpc2b (ENSPFOG00000014548)	rpl24 (ENSPFOG00000014554)	cep97 (ENSPFOG00000014597)	nxpe3 (ENSPFOG00000014675)	me3 (ENSPFOG00000014688)	ildr1b (ENSPFOG00000014793)	ildr2 (ENSPFOG00000014843)	ENSPFOG00000014866	pou2f1b (ENSPFOG00000014888)	lamp1b (ENSPFOG00000014931) #22	grtp1b (ENSPFOG00000014947) #23	dcun1d2a (ENSPFOG00000014984)	tfdp1a (ENSPFOG00000015018) #27	grk1a (ENSPFOG00000015075) #29	mettl21cb (ENSPFOG00000015105)	ENSPFOG00000022949	jam2b (ENSPFOG00000015115)	st6gal2a (ENSPFOG00000015157)	tmtops2b (ENSPFOG00000015179)	uxs1 (ENSPFOG00000015215)	ecrg4a (ENSPFOG00000015288)	nck2a (ENSPFOG00000015297)	FHL2 (ENSPFOG00000015302)	si:dkeyp-118h3.6 (ENSPFOG00000015324)	GPR45 (ENSPFOG00000020103)
Sailfin molly	MODERN SPECIES	725			OTC (ENSPLAG00000020832)	gpr161b (ENSPLAG00000020805)	dcaf6 (ENSPLAG00000020784)	mpc2b (ENSPLAG00000020690)	rpl24 (ENSPLAG00000020665)	cep97 (ENSPLAG00000020659)	nxpe3 (ENSPLAG00000020552)	me3 (ENSPLAG00000020525)	ildr1b (ENSPLAG00000020490)	ildr2 (ENSPLAG00000020447)	ENSPLAG00000020425	pou2f1b (ENSPLAG00000020393)	ENSPLAG00000020379	lamp1b (ENSPLAG00000020363) #22	grtp1b (ENSPLAG00000020352) #23	dcun1d2a (ENSPLAG00000020328)	tfdp1a (ENSPLAG00000020307) #27	grk1a (ENSPLAG00000020297) #29	mettl21cb (ENSPLAG00000020271)	jam2b (ENSPLAG00000020248)
Guppy	MODERN SPECIES	450	srpx (ENSPREG00000010207)	ENSPREG00000010180	OTC (ENSPREG00000010161)	gpr161b (ENSPREG00000010136)	dcaf6 (ENSPREG00000010047)	mpc2b (ENSPREG00000010013)	rpl24 (ENSPREG00000009982)	ENSPREG00000009971	ENSPREG00000009941	nxpe3 (ENSPREG00000009934)	me3 (ENSPREG00000009844)	ildr1b (ENSPREG00000009773)	ildr2 (ENSPREG00000009751)	ENSPREG00000009722	pou2f1b (ENSPREG00000009681)	lamp1b (ENSPREG00000009647) #22	grtp1b (ENSPREG00000009638) #23	dcun1d2a (ENSPREG00000009618)	tfdp1a (ENSPREG00000009556) #27	grk1a (ENSPREG00000009528) #29	mettl21cb (ENSPREG00000009472)	jam2b (ENSPREG00000009428)	st6gal2a (ENSPREG00000009371)	tmtops2b (ENSPREG00000009345)	uxs1 (ENSPREG00000009314)	ecrg4a (ENSPREG00000009295)	nck2a (ENSPREG00000009287)	FHL2 (ENSPREG00000009261)	GPR45 (ENSPREG00000009256)	ENSPREG00000009250	tmem182a (ENSPREG00000009229)
Platyfish	MODERN SPECIES	21	ENSXMAG00000024447	ENSXMAG00000024323	OTC (ENSXMAG00000011883)	gpr161b (ENSXMAG00000028591)	dcaf6 (ENSXMAG00000011866)	mpc2b (ENSXMAG00000029845)	rpl24 (ENSXMAG00000029781)	cep97 (ENSXMAG00000011833)	nxpe3 (ENSXMAG00000011826)	me3 (ENSXMAG00000011790)	ildr1b (ENSXMAG00000011785)	ildr2 (ENSXMAG00000011776)	ENSXMAG00000011769	pou2f1b (ENSXMAG00000011697)	ENSXMAG00000028594	lamp1b (ENSXMAG00000011695) #22	grtp1b (ENSXMAG00000011689) #23	dcun1d2a (ENSXMAG00000026746)	tfdp1a (ENSXMAG00000011667) #27	grk1a (ENSXMAG00000011659) #29	mettl21cb (ENSXMAG00000025863)	ENSXMAG00000028777	jam2b (ENSXMAG00000024003)	st6gal2a (ENSXMAG00000029471)	tmtops2b (ENSXMAG00000011639)	uxs1 (ENSXMAG00000011616)	ecrg4a (ENSXMAG00000011609)	nck2a (ENSXMAG00000022396)	FHL2 (ENSXMAG00000011596)	si:dkeyp-118h3.6 (ENSXMAG00000011593)	GPR45 (ENSXMAG00000019935)
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT01100000265732	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b	ENSGT00940000164385.a.a.a.a
Climbing perch	MODERN SPECIES	12	SYTL5 (ENSATEG00000010343)	srpx (ENSATEG00000010304)	ENSATEG00000025996	OTC (ENSATEG00000010214)	gpr161b (ENSATEG00000010177)	ENSATEG00000010130	mpc2b (ENSATEG00000025228)	RPL24 (ENSATEG00000028928)	ENSATEG00000029367	nxpe3 (ENSATEG00000010047)	me3 (ENSATEG00000009991)	ildr1b (ENSATEG00000009968)	ildr2 (ENSATEG00000009911)	pou2f1b (ENSATEG00000009788)	ENSATEG00000009773	lamp1b (ENSATEG00000009745) #22	grtp1b (ENSATEG00000028451) #23	dcun1d2a (ENSATEG00000027873)	tfdp1a (ENSATEG00000009617) #27	ENSATEG00000009573 #29	mettl21cb (ENSATEG00000009547)	jam2b (ENSATEG00000009527)	st6gal2a (ENSATEG00000009508)	tmtops2b (ENSATEG00000009482)	uxs1 (ENSATEG00000009425)	ecrg4a (ENSATEG00000009419)	nck2a (ENSATEG00000009402)	FHL2 (ENSATEG00000009384)	si:dkeyp-118h3.6 (ENSATEG00000009349)	GPR45 (ENSATEG00000009341)	ENSATEG00000009329
Siamese fighting fish	MODERN SPECIES	11	srpx (ENSBSLG00000017343)	ENSBSLG00000016973	OTC (ENSBSLG00000016720)	gpr161b (ENSBSLG00000016592)	dcaf6 (ENSBSLG00000014774)	mpc2b (ENSBSLG00000014713)	rpl24 (ENSBSLG00000014687)	cep97 (ENSBSLG00000014673)	nxpe3 (ENSBSLG00000014647)	me3 (ENSBSLG00000014177)	ildr1b (ENSBSLG00000014142)	ildr2 (ENSBSLG00000014093)	ENSBSLG00000014058	pou2f1b (ENSBSLG00000013759)	ENSBSLG00000013747	lamp1b (ENSBSLG00000013740) #22	grtp1b (ENSBSLG00000013729) #23	dcun1d2a (ENSBSLG00000013626)	tfdp1a (ENSBSLG00000013519) #27	grk1a (ENSBSLG00000013574) #29	mettl21cb (ENSBSLG00000013495)	jam2b (ENSBSLG00000013463)	st6gal2a (ENSBSLG00000013433)	tmtops2b (ENSBSLG00000013423)	uxs1 (ENSBSLG00000013321)	ecrg4a (ENSBSLG00000013277)	nck2a (ENSBSLG00000013220)	FHL2 (ENSBSLG00000013194)	si:dkeyp-118h3.6 (ENSBSLG00000013177)	GPR45 (ENSBSLG00000013157)	ENSBSLG00000013137
Zig-zag eel	MODERN SPECIES	13	srpx (ENSMAMG00000015764)	ENSMAMG00000027193	OTC (ENSMAMG00000015836)	gpr161b (ENSMAMG00000015881)	ENSMAMG00000015891	mpc2b (ENSMAMG00000026972)	RPL24 (ENSMAMG00000026770)	ENSMAMG00000015960	nxpe3 (ENSMAMG00000015975)	me3 (ENSMAMG00000015988)	ildr1b (ENSMAMG00000016021)	ildr2 (ENSMAMG00000016035)	ENSMAMG00000016075	pou2f1b (ENSMAMG00000016182)	ENSMAMG00000028131	lamp1b (ENSMAMG00000016314) #22	grtp1b (ENSMAMG00000016347) #23	dcun1d2a (ENSMAMG00000016370)	tfdp1a (ENSMAMG00000016403) #27	ENSMAMG00000016422 #29	mettl21cb (ENSMAMG00000016443)	jam2b (ENSMAMG00000025440)	st6gal2a (ENSMAMG00000024515)	tmtops2b (ENSMAMG00000016465)	uxs1 (ENSMAMG00000016482)	ecrg4a (ENSMAMG00000016523)	ENSMAMG00000016529	nck2a (ENSMAMG00000016535)	FHL2 (ENSMAMG00000026000)	si:dkeyp-118h3.6 (ENSMAMG00000016562)	GPR45 (ENSMAMG00000016579)
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT01100000265732	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b	ENSGT00940000164385.a.a.a.a
Turbot	MODERN SPECIES	5	ENSSMAG00000019254	OTC (ENSSMAG00000019270)	gpr161b (ENSSMAG00000019278)	ENSSMAG00000019291	mpc2b (ENSSMAG00000019389)	RPL24 (ENSSMAG00000019403)	ENSSMAG00000019410	nxpe3 (ENSSMAG00000019472)	me3 (ENSSMAG00000019475)	ildr1b (ENSSMAG00000019498)	ildr2 (ENSSMAG00000019518)	ENSSMAG00000019530	pou2f1b (ENSSMAG00000019533)	ENSSMAG00000019577	ENSSMAG00000019585	lamp1b (ENSSMAG00000022080) #22	grtp1b (ENSSMAG00000019606) #23	dcun1d2a (ENSSMAG00000019610)	TFDP1 (ENSSMAG00000019629) #27	ENSSMAG00000019666 #29	mettl21cb (ENSSMAG00000027488)	ENSSMAG00000019686	ENSSMAG00000036309	jam2b (ENSSMAG00000019696)	st6gal2a (ENSSMAG00000036420)	tmtops2b (ENSSMAG00000019726)	uxs1 (ENSSMAG00000019732)	ecrg4a (ENSSMAG00000029064)	nck2a (ENSSMAG00000019775)	FHL2 (ENSSMAG00000023656)	si:dkeyp-118h3.6 (ENSSMAG00000019796)
Tongue sole	MODERN SPECIES	7	SYTL5 (ENSCSEG00000003988)	srpx (ENSCSEG00000003992)	OTC (ENSCSEG00000003995)	gpr161b (ENSCSEG00000004004)	dcaf6 (ENSCSEG00000004015)	mpc2b (ENSCSEG00000004043)	rpl24 (ENSCSEG00000004049)	ENSCSEG00000004059	tuba8l2 (ENSCSEG00000004061)	nxpe3 (ENSCSEG00000004065)	me3 (ENSCSEG00000004073)	ildr1b (ENSCSEG00000004095)	ildr2 (ENSCSEG00000004104)	ENSCSEG00000004112	pou2f1b (ENSCSEG00000004122)	lamp1b (ENSCSEG00000004146) #22	grtp1b (ENSCSEG00000004149) #23	dcun1d2a (ENSCSEG00000004160)	tfdp1a (ENSCSEG00000004170) #27	grk1a (ENSCSEG00000004181) #29	mettl21cb (ENSCSEG00000004190)	jam2b (ENSCSEG00000004200)	st6gal2a (ENSCSEG00000004208)	tmtops2b (ENSCSEG00000004215)	uxs1 (ENSCSEG00000004218)	ecrg4a (ENSCSEG00000004235)	mrpl30 (ENSCSEG00000004238)	txndc9 (ENSCSEG00000004242)	mitd1 (ENSCSEG00000004249)	ENSCSEG00000004259	creg2 (ENSCSEG00000004269)
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A.d	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT01100000265732	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Barramundi perch	MODERN SPECIES	142	COL6A2 (ENSLCAG00010023774)	xrcc5 (ENSLCAG00010023762)	OTC (ENSLCAG00010023748)	gpr161b (ENSLCAG00010023744)	dcaf6 (ENSLCAG00010023701)	mpc2b (ENSLCAG00010023666)	rpl24 (ENSLCAG00010023664)	cep97 (ENSLCAG00010023653)	nxpe3 (ENSLCAG00010023641)	me3 (ENSLCAG00010023581)	ildr1b (ENSLCAG00010023542)	ildr2 (ENSLCAG00010023539)	ENSLCAG00010023532	pou2f1b (ENSLCAG00010023521)	ENSLCAG00010023516	lamp1b (ENSLCAG00010023514) #22	grtp1b (ENSLCAG00010023511) #23	dcun1d2a (ENSLCAG00010023492)	tfdp1a (ENSLCAG00010023480) #27	grk1a (ENSLCAG00010023310) #29	mettl21cb (ENSLCAG00010023275)	jam2b (ENSLCAG00010023271)	st6gal2a (ENSLCAG00010023267)	tmtops2b (ENSLCAG00010023265)	uxs1 (ENSLCAG00010023160)	ecrg4a (ENSLCAG00010023116)	ENSLCAG00010023114	nck2a (ENSLCAG00010023112)
Seriola	ANCESTRAL SPECIES	6	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A.d	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT01100000265732	ENSGT00940000165208.b	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Yellowtail amberjack	MODERN SPECIES	2951	SYTL5 (ENSSLDG00000019172)	srpx (ENSSLDG00000019085)	ENSSLDG00000019042	OTC (ENSSLDG00000019002)	gpr161b (ENSSLDG00000018990)	dcaf6 (ENSSLDG00000018835)	mpc2b (ENSSLDG00000018785)	rpl24 (ENSSLDG00000018738)	ENSSLDG00000018723	nxpe3 (ENSSLDG00000018710)	me3 (ENSSLDG00000018670)	ildr1b (ENSSLDG00000018651)	ildr2 (ENSSLDG00000018630)	ENSSLDG00000018601	pou2f1b (ENSSLDG00000018572)	lamp1b (ENSSLDG00000018552) #22	grtp1b (ENSSLDG00000018522) #23	dcun1d2a (ENSSLDG00000018504)	tfdp1a (ENSSLDG00000018465) #27	grk1a (ENSSLDG00000018437) #29	mettl21cb (ENSSLDG00000018426)	ENSSLDG00000018413	jam2b (ENSSLDG00000018403)	ENSSLDG00000018389	tmtops2b (ENSSLDG00000018373)	uxs1 (ENSSLDG00000018356)	ecrg4a (ENSSLDG00000018344)	ENSSLDG00000018330
Greater amberjack	MODERN SPECIES	21	srpx (ENSSDUG00000005569)	ENSSDUG00000005597	OTC (ENSSDUG00000005612)	gpr161b (ENSSDUG00000005660)	dcaf6 (ENSSDUG00000005699)	mpc2b (ENSSDUG00000005722)	rpl24 (ENSSDUG00000005745)	ENSSDUG00000005781	nxpe3 (ENSSDUG00000005794)	me3 (ENSSDUG00000005817)	ildr1b (ENSSDUG00000005895)	ildr2 (ENSSDUG00000005917)	ENSSDUG00000005959	pou2f1b (ENSSDUG00000005992)	ENSSDUG00000006057	lamp1b (ENSSDUG00000006073) #22	grtp1b (ENSSDUG00000006094) #23	dcun1d2a (ENSSDUG00000006119)	tfdp1a (ENSSDUG00000006151) #27	grk1a (ENSSDUG00000006185) #29	mettl21cb (ENSSDUG00000006196)	jam2b (ENSSDUG00000006202)	ENSSDUG00000006221	tmtops2b (ENSSDUG00000006252)	uxs1 (ENSSDUG00000006271)	ecrg4a (ENSSDUG00000006292)	ENSSDUG00000006333	nck2a (ENSSDUG00000006337)	FHL2 (ENSSDUG00000006358)	si:dkeyp-118h3.6 (ENSSDUG00000006375)	GPR45 (ENSSDUG00000006419)
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000155009.a	ENSGT00940000158618	ENSGT00940000160302	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.a.a	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	13	srpx (ENSTNIG00000013905)	OTC (ENSTNIG00000013904)	gpr161b (ENSTNIG00000013903)	dcaf6 (ENSTNIG00000013902)	rpl24 (ENSTNIG00000013901)	cep97 (ENSTNIG00000013900)	nxpe3 (ENSTNIG00000013899)	me3 (ENSTNIG00000013898)	ildr1b (ENSTNIG00000013897)	ildr2 (ENSTNIG00000013896)	ENSTNIG00000013895	ENSTNIG00000013894	ENSTNIG00000013893	pou2f1b (ENSTNIG00000013892)	lamp1b (ENSTNIG00000001256) #22	lamp1b (ENSTNIG00000001591) #22	grtp1b (ENSTNIG00000013891) #23	dcun1d2a (ENSTNIG00000013890)	tfdp1a (ENSTNIG00000013889) #27	grk1a (ENSTNIG00000013888) #29	mettl21cb (ENSTNIG00000013887)	ENSTNIG00000013886	jam2b (ENSTNIG00000013885)	ST6GAL2 (ENSTNIG00000013884)	tmtops2b (ENSTNIG00000000321)	uxs1 (ENSTNIG00000013883)	ecrg4a (ENSTNIG00000013882)	nck2a (ENSTNIG00000013881)	FHL2 (ENSTNIG00000000462)	ENSTNIG00000000423	MAPK12 (ENSTNIG00000013880)
Tetraodon	MODERN SPECIES	13	DYNLT3 (ENSTNIG00000013906)	srpx (ENSTNIG00000013905)	OTC (ENSTNIG00000013904)	gpr161b (ENSTNIG00000013903)	dcaf6 (ENSTNIG00000013902)	rpl24 (ENSTNIG00000013901)	cep97 (ENSTNIG00000013900)	nxpe3 (ENSTNIG00000013899)	me3 (ENSTNIG00000013898)	ildr1b (ENSTNIG00000013897)	ildr2 (ENSTNIG00000013896)	ENSTNIG00000013895	ENSTNIG00000013894	ENSTNIG00000013893	pou2f1b (ENSTNIG00000013892)	lamp1b (ENSTNIG00000001256) #22	lamp1b (ENSTNIG00000001591) #22	grtp1b (ENSTNIG00000013891) #23	dcun1d2a (ENSTNIG00000013890)	tfdp1a (ENSTNIG00000013889) #27	grk1a (ENSTNIG00000013888) #29	mettl21cb (ENSTNIG00000013887)	ENSTNIG00000013886	jam2b (ENSTNIG00000013885)	ST6GAL2 (ENSTNIG00000013884)	tmtops2b (ENSTNIG00000000321)	uxs1 (ENSTNIG00000013883)	ecrg4a (ENSTNIG00000013882)	nck2a (ENSTNIG00000013881)	FHL2 (ENSTNIG00000000462)	ENSTNIG00000000423
Fugu	MODERN SPECIES		SYTL5 (ENSTRUG00000011476)	srpx (ENSTRUG00000011607)	OTC (ENSTRUG00000011713)	gpr161b (ENSTRUG00000024089)	dcaf6 (ENSTRUG00000011949)	mpc2b (ENSTRUG00000012189)	rpl24 (ENSTRUG00000012199)	cep97 (ENSTRUG00000012266)	nxpe3 (ENSTRUG00000012334)	me3 (ENSTRUG00000012404)	ildr1b (ENSTRUG00000012684)	ildr2 (ENSTRUG00000012720)	ENSTRUG00000026688	pou2f1b (ENSTRUG00000012822)	ENSTRUG00000024519	lamp1b (ENSTRUG00000012964) #22	grtp1b (ENSTRUG00000012971) #23	dcun1d2a (ENSTRUG00000025379)	tfdp1a (ENSTRUG00000013098) #27	grk1a (ENSTRUG00000013181) #29	mettl21cb (ENSTRUG00000013260)	ENSTRUG00000024460	jam2b (ENSTRUG00000013286)	ENSTRUG00000028369	st6gal2a (ENSTRUG00000013370)	tmtops2b (ENSTRUG00000013462)	uxs1 (ENSTRUG00000022548)	ecrg4a (ENSTRUG00000027159)	nck2a (ENSTRUG00000013538)	FHL2 (ENSTRUG00000013559)	si:dkeyp-118h3.6 (ENSTRUG00000023190)
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Ballan wrasse	MODERN SPECIES	316	SYTL5 (ENSLBEG00000001000)	srpx (ENSLBEG00000001038)	ENSLBEG00000001104	OTC (ENSLBEG00000001188)	gpr161b (ENSLBEG00000001389)	dcaf6 (ENSLBEG00000001424)	mpc2b (ENSLBEG00000001456)	rpl24 (ENSLBEG00000001496)	ENSLBEG00000001547	nxpe3 (ENSLBEG00000001562)	me3 (ENSLBEG00000001595)	ildr1b (ENSLBEG00000001636)	ildr2 (ENSLBEG00000001664)	ENSLBEG00000001688	pou2f1b (ENSLBEG00000001737)	lamp1b (ENSLBEG00000001766) #22	grtp1b (ENSLBEG00000001774) #23	dcun1d2a (ENSLBEG00000001827)	tfdp1a (ENSLBEG00000001874) #27	grk1a (ENSLBEG00000001916) #29	mettl21cb (ENSLBEG00000001959)	jam2b (ENSLBEG00000002064)
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Perciformes	ANCESTRAL SPECIES	20	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00940000158618	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b	ENSGT00940000164385.a.a.a.a
Lumpfish	MODERN SPECIES	13	DYNLT3 (ENSCLMG00005003642)	SYTL5 (ENSCLMG00005003636)	srpx (ENSCLMG00005003142)	ENSCLMG00005003119	OTC (ENSCLMG00005003081)	gpr161b (ENSCLMG00005003070)	dcaf6 (ENSCLMG00005002829)	mpc2b (ENSCLMG00005002800)	rpl24 (ENSCLMG00005002786)	cep97 (ENSCLMG00005002782)	me3 (ENSCLMG00005002776)	ildr1b (ENSCLMG00005002772)	ildr2 (ENSCLMG00005020351)	ENSCLMG00005020350	pou2f1b (ENSCLMG00005020347)	lamp1b (ENSCLMG00005020346) #22	grtp1b (ENSCLMG00005020345) #23	dcun1d2a (ENSCLMG00005020344)	tfdp1a (ENSCLMG00005020335) #27	grk1a (ENSCLMG00005020333) #29	jam2b (ENSCLMG00005020332)	st6gal2a (ENSCLMG00005020331)	tmtops2b (ENSCLMG00005020330)	uxs1 (ENSCLMG00005020315)	ENSCLMG00005020314	nck2a (ENSCLMG00005020313)	FHL2 (ENSCLMG00005020312)	si:dkeyp-118h3.6 (ENSCLMG00005020311)	GPR45 (ENSCLMG00005020310)	ENSCLMG00005020309	tmem182a (ENSCLMG00005020308)
Stickleback	MODERN SPECIES	16	SYTL5 (ENSGACG00000003344)	srpx (ENSGACG00000003318)	ENSGACG00000003314	OTC (ENSGACG00000003296)	gpr161b (ENSGACG00000003291)	dcaf6 (ENSGACG00000003276)	mpc2b (ENSGACG00000003264)	rpl24 (ENSGACG00000003250)	cep97 (ENSGACG00000003240)	nxpe3 (ENSGACG00000003237)	me3 (ENSGACG00000003184)	ildr1b (ENSGACG00000003173)	ildr2 (ENSGACG00000003166)	ENSGACG00000003161	pou2f1b (ENSGACG00000003150)	lamp1b (ENSGACG00000003146) #22	grtp1b (ENSGACG00000003127) #23	dcun1d2a (ENSGACG00000003116)	tfdp1a (ENSGACG00000003108) #27	grk1a (ENSGACG00000003079) #29	mettl21cb (ENSGACG00000003076)	jam2b (ENSGACG00000003073)	st6gal2a (ENSGACG00000003067)	tmtops2b (ENSGACG00000003063)	uxs1 (ENSGACG00000003038)	ecrg4a (ENSGACG00000003031)	nck2a (ENSGACG00000003022)	FHL2 (ENSGACG00000003005)	si:dkeyp-118h3.6 (ENSGACG00000003001)	GPR45 (ENSGACG00000002996)	ENSGACG00000002992
Perciformes_a	ANCESTRAL SPECIES	21	ENSGT00940000160302	ENSGT00940000159616	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Channel bull blenny	MODERN SPECIES	13	ENSCGOG00000008237	ENSCGOG00000008232	OTC (ENSCGOG00000008058)	gpr161b (ENSCGOG00000008056)	dcaf6 (ENSCGOG00000007164)	mpc2b (ENSCGOG00000007144)	rpl24 (ENSCGOG00000007141)	cep97 (ENSCGOG00000007139)	nxpe3 (ENSCGOG00000007133)	me3 (ENSCGOG00000003803)	ildr1b (ENSCGOG00000003716)	ildr2 (ENSCGOG00000003708)	ENSCGOG00000003699	pou2f1b (ENSCGOG00000003513)	ENSCGOG00000003508	lamp1b (ENSCGOG00000003506) #22	grtp1b (ENSCGOG00000003492) #23	dcun1d2a (ENSCGOG00000003479)	tfdp1a (ENSCGOG00000003385) #27	grk1a (ENSCGOG00000003281) #29	mettl21cb (ENSCGOG00000003274)	jam2b (ENSCGOG00000003271)	st6gal2a (ENSCGOG00000003267)	tmtops2b (ENSCGOG00000003262)	uxs1 (ENSCGOG00000002903)	ecrg4a (ENSCGOG00000002880)	FHL2 (ENSCGOG00000002757)	nck2a (ENSCGOG00000002738)	si:dkeyp-118h3.6 (ENSCGOG00000002698)	GPR45 (ENSCGOG00000023750)	ENSCGOG00000023747
Pike perch	MODERN SPECIES	1	srpx (ENSSLUG00000016163)	ENSSLUG00000016147	OTC (ENSSLUG00000016136)	gpr161b (ENSSLUG00000016129)	dcaf6 (ENSSLUG00000015972)	mpc2b (ENSSLUG00000015916)	rpl24 (ENSSLUG00000015888)	cep97 (ENSSLUG00000015863)	nxpe3 (ENSSLUG00000015852)	me3 (ENSSLUG00000010384)	ildr1b (ENSSLUG00000010203)	ildr2 (ENSSLUG00000010197)	ENSSLUG00000010194	pou2f1b (ENSSLUG00000010188)	ENSSLUG00000010184	lamp1b (ENSSLUG00000010179) #22	grtp1b (ENSSLUG00000010164) #23	dcun1d2a (ENSSLUG00000010115)	tfdp1a (ENSSLUG00000010096) #27	grk1a (ENSSLUG00000009970) #29	mettl21cb (ENSSLUG00000009956)	jam2b (ENSSLUG00000009951)	ENSSLUG00000009946	tmtops2b (ENSSLUG00000009942)	uxs1 (ENSSLUG00000009454)	ecrg4a (ENSSLUG00000009409)	ENSSLUG00000009406	nck2a (ENSSLUG00000009401)	FHL2 (ENSSLUG00000009398)	si:dkeyp-118h3.6 (ENSSLUG00000009392)	GPR45 (ENSSLUG00000009386)
Eupecaria_C	ANCESTRAL SPECIES	21	ENSGT00940000160302	ENSGT00940000159616.d	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488
Gilthead seabream	MODERN SPECIES	23	OTC (ENSSAUG00010011266)	gpr161b (ENSSAUG00010011263)	dcaf6 (ENSSAUG00010009671)	mpc2b (ENSSAUG00010009636)	ENSSAUG00010009635	rpl24 (ENSSAUG00010009630)	cep97 (ENSSAUG00010009592)	nxpe3 (ENSSAUG00010009588)	nxpe3 (ENSSAUG00010009585)	me3 (ENSSAUG00010001724)	ildr1b (ENSSAUG00010001295)	ildr2 (ENSSAUG00010001292)	ENSSAUG00010022370	pou2f1b (ENSSAUG00010022367)	ENSSAUG00010022364	lamp1b (ENSSAUG00010022363) #22	grtp1b (ENSSAUG00010022361) #23	dcun1d2a (ENSSAUG00010022357)	tfdp1a (ENSSAUG00010022348) #27	grk1a (ENSSAUG00010022347) #29	mettl21cb (ENSSAUG00010022344)	ENSSAUG00010022343	jam2b (ENSSAUG00010022342)	ENSSAUG00010022341	st6gal2a (ENSSAUG00010022339)	tmtops2b (ENSSAUG00010022338)	uxs1 (ENSSAUG00010022058)	ecrg4a (ENSSAUG00010022049)	ENSSAUG00010022048	nck2a (ENSSAUG00010022046)	FHL2 (ENSSAUG00010022045)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18	ENSGT00940000160302	ENSGT00940000159616.d	ENSGT00510000047417	ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.h	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831	ENSGT00940000177034	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00990000203982	ENSGT00940000157728.a.b	ENSGT00940000157728.b	ENSGT00950000183028.a.a.a.g.a
European seabass	MODERN SPECIES	5	srpx (ENSDLAG00005011646)	ENSDLAG00005011848	OTC (ENSDLAG00005031945)	gpr161b (ENSDLAG00005012014)	ENSDLAG00005012037	mpc2b (ENSDLAG00005013375)	RPL24 (ENSDLAG00005013403)	ENSDLAG00005013477	nxpe3 (ENSDLAG00005013512)	me3 (ENSDLAG00005013570)	ildr1b (ENSDLAG00005015273)	ildr2 (ENSDLAG00005015280)	pou2f1b (ENSDLAG00005028998)	GPA33 (ENSDLAG00005022007)	ENSDLAG00005015793	lamp1b (ENSDLAG00005015802) #22	grtp1b (ENSDLAG00005028293) #23	dcun1d2a (ENSDLAG00005015860)	tfdp1a (ENSDLAG00005035138) #27	ENSDLAG00005015944 #29	mettl21cb (ENSDLAG00005015951)	jam2b (ENSDLAG00005015964)	st6gal2a (ENSDLAG00005015986)	tmtops2b (ENSDLAG00005016004)	uxs1 (ENSDLAG00005016009)	ecrg4a (ENSDLAG00005016230)	ENSDLAG00005016254	nck2a (ENSDLAG00005016267)	FHL2 (ENSDLAG00005016283)	si:dkeyp-118h3.6 (ENSDLAG00005016297)	GPR45 (ENSDLAG00005029310)
Large yellow croaker	MODERN SPECIES	490	srpx (ENSLCRG00005015900)	ENSLCRG00005015963	OTC (ENSLCRG00005015967)	gpr161b (ENSLCRG00005015997)	dcaf6 (ENSLCRG00005016026)	mpc2b (ENSLCRG00005017385)	rpl24 (ENSLCRG00005017386)	cep97 (ENSLCRG00005017393)	nxpe3 (ENSLCRG00005010156)	me3 (ENSLCRG00005010161)	ildr1b (ENSLCRG00005011638)	ildr2 (ENSLCRG00005011640)	ENSLCRG00005011646	pou2f1b (ENSLCRG00005011648)	ENSLCRG00005011767	lamp1b (ENSLCRG00005011768) #22	grtp1b (ENSLCRG00005011770) #23	dcun1d2a (ENSLCRG00005011771)	tfdp1a (ENSLCRG00005011808) #27	grk1a (ENSLCRG00005011813) #29	mettl21cb (ENSLCRG00005011816)	ENSLCRG00005011817	jam2b (ENSLCRG00005011818)	st6gal2a (ENSLCRG00005011819)	tmtops2b (ENSLCRG00005011820)	uxs1 (ENSLCRG00005011822)	ecrg4a (ENSLCRG00005011859)	ENSLCRG00005011860	nck2a (ENSLCRG00005011861)	NCK2 (ENSLCRG00005011863)	FHL2 (ENSLCRG00005011864)
Pinecone sodierfish	MODERN SPECIES	13	ENSMMDG00005013644	OTC (ENSMMDG00005013652)	gpr161b (ENSMMDG00005013662)	dcaf6 (ENSMMDG00005013680)	mpc2b (ENSMMDG00005014737)	rpl24 (ENSMMDG00005014741)	ENSMMDG00005014748	ENSMMDG00005014754	nxpe3 (ENSMMDG00005014755)	me3 (ENSMMDG00005014802)	ildr1b (ENSMMDG00005017095)	ildr2 (ENSMMDG00005017097)	ENSMMDG00005017107	pou2f1b (ENSMMDG00005017116)	ENSMMDG00005017122	lamp1b (ENSMMDG00005017123) #22	grtp1b (ENSMMDG00005017125) #23	dcun1d2a (ENSMMDG00005017130)	tfdp1a (ENSMMDG00005017140) #27	grk1a (ENSMMDG00005017148) #29	mettl21cb (ENSMMDG00005017154)	jam2b (ENSMMDG00005017170)	ENSMMDG00005017176	tmtops2b (ENSMMDG00005017224)	uxs1 (ENSMMDG00005017234)	ecrg4a (ENSMMDG00005017293)	ENSMMDG00005017294	nck2a (ENSMMDG00005017296)	FHL2 (ENSMMDG00005017299)	si:dkeyp-118h3.6 (ENSMMDG00005017309)	GPR45 (ENSMMDG00005017312)
Cod	DUPLICATION
Cod	MODERN SPECIES	12	dcun1d2a (ENSGMOG00000005782)	tfdp1a (ENSGMOG00000027221) #27	ENSGMOG00000011550 #29	mettl21cb (ENSGMOG00000027825)	jam2b (ENSGMOG00000003102)	ENSGMOG00000034190	tmtops2b (ENSGMOG00000017190)	uxs1 (ENSGMOG00000017159)	ecrg4a (ENSGMOG00000029519)	ENSGMOG00000035716	nck2a (ENSGMOG00000033042)	ENSGMOG00000023960	ENSGMOG00000028295	ENSGMOG00000033555	ENSGMOG00000026028	LAMP1 (ENSGMOG00000030817) #22	ENSGMOG00000011575 #23	dcun1d2a (ENSGMOG00000011570)	tfdp1a (ENSGMOG00000032446) #27	ENSGMOG00000025100 #29	mettl21cb (ENSGMOG00000032130)	jam2b (ENSGMOG00000029884)	ENSGMOG00000033755	tmtops2b (ENSGMOG00000033133)	uxs1 (ENSGMOG00000034213)	ecrg4a (ENSGMOG00000025446)	ENSGMOG00000026826	nck2a (ENSGMOG00000000155)	ENSGMOG00000030205	ENSGMOG00000030271	ENSGMOG00000030899
Cod	MODERN SPECIES	12	ENSGMOG00000003765	OTC (ENSGMOG00000003743)	gpr161b (ENSGMOG00000003731)	ENSGMOG00000003651	mpc2b (ENSGMOG00000003638)	RPL24 (ENSGMOG00000003627)	ENSGMOG00000027269	ENSGMOG00000027391	nxpe3 (ENSGMOG00000022197)	nxpe3 (ENSGMOG00000029131)	me3 (ENSGMOG00000011631)	ildr1b (ENSGMOG00000037170)	ildr2 (ENSGMOG00000011612)	ENSGMOG00000011606	pou2f1b (ENSGMOG00000011587)	lamp1b (ENSGMOG00000027758) #22	grtp1b (ENSGMOG00000031351) #23	dcun1d2a (ENSGMOG00000005782)	tfdp1a (ENSGMOG00000027221) #27	ENSGMOG00000011550 #29	mettl21cb (ENSGMOG00000027825)	jam2b (ENSGMOG00000003102)	ENSGMOG00000034190	tmtops2b (ENSGMOG00000017190)	uxs1 (ENSGMOG00000017159)	ecrg4a (ENSGMOG00000029519)	ENSGMOG00000035716	nck2a (ENSGMOG00000033042)	ENSGMOG00000023960	ENSGMOG00000028295	ENSGMOG00000033555
Protacanthopterygii	ANCESTRAL SPECIES	86						ENSGT00940000157829	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000183105.A	ENSGT00910000144283	ENSGT00950000182866.D.d.a.c.a.i.a.a	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a	ENSGT00940000157868	ENSGT00390000000145	ENSGT00940000157728.a.b.d	ENSGT00950000183028.a.a.a.g.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	288														ENSGT00940000157831.k.b	ENSGT00990000210160	ENSGT00950000182899.B.a.j.e #22	ENSGT00940000154927.c.b.c #23	ENSGT00940000157453.s.b	ENSGT00940000154652.p.b #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d.h	ENSGT00940000166048.a.a	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a.i.a.b	ENSGT01100000263502.A.a.a.a.b.a.a.i.a.a	ENSGT00940000157868.k.a	ENSGT00390000000145.h.b	ENSGT01100000263996	ENSGT00940000157728.a.b.d.b	ENSGT00950000183028.a.a.a.g.a.a	ENSGT00390000007488
Huchen	MODERN SPECIES	3075														pou2f1b (ENSHHUG00000023910)	ENSHHUG00000024019	lamp1b (ENSHHUG00000024023) #22	grtp1b (ENSHHUG00000024028) #23	dcun1d2a (ENSHHUG00000024033)	grk1a (ENSHHUG00000024043) #29	mettl21cb (ENSHHUG00000024128)	ENSHHUG00000024141	ENSHHUG00000024143	ENSHHUG00000024148	st6gal2a (ENSHHUG00000024153)
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000155375.m.a	ENSGT00390000001021.w.b	ENSGT00950000182900.C.hb.a	ENSGT00510000047120.fb	ENSGT00950000183105.A.g.a	ENSGT00910000144283.c	ENSGT00950000182866.D.d.a.c.a.i.a.a	ENSGT00950000183134.c.a.a.ab	ENSGT00950000183058.A.b.a.c	ENSGT00950000183058.A.a.c.c	ENSGT00940000160248.a	ENSGT00940000166391	ENSGT00940000160215	ENSGT00940000157831.k.b	ENSGT00990000210160.a	ENSGT00950000182899.B.a.j.e #22	ENSGT00940000154927.c.b.c #23	ENSGT00940000157453.s.b	ENSGT00940000154652.p.b #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d.h	ENSGT00940000166048.a.a	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a.i.a.b	ENSGT01100000263502.A.a.a.a.b.a.a.i.b	ENSGT00940000157868.k.a	ENSGT00390000000145.h.b	ENSGT01100000263996	ENSGT00940000157728.a.b.d.b	ENSGT00950000183028.a.a.a.g.a.a	ENSGT00390000007488
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000155375.m.a	ENSGT00390000001021.w.b	ENSGT00950000182900.C.hb.a	ENSGT00510000047120.fb	ENSGT00950000183105.A.g.a	ENSGT00910000144283.c	ENSGT00950000182866.D.d.a.c.a.i.a.a	ENSGT00950000183134.c.a.a.ab	ENSGT00950000183058.A.b.a.c	ENSGT00950000183058.A.a.c.c	ENSGT00940000160248.a	ENSGT00940000166391	ENSGT00940000160215	ENSGT00940000157831.k.b	ENSGT00990000210160.a	ENSGT00950000182899.B.a.j.e #22	ENSGT00940000154927.c.b.c #23	ENSGT00940000157453.s.b	ENSGT00940000154652.p.b #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d.h	ENSGT00940000166048.a.a	ENSGT00940000165208.b.c.a	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a.i.a.b	ENSGT00940000157868.k.a	ENSGT00390000000145.h.b	ENSGT01100000263996	ENSGT00940000157728.a.b.d.b	ENSGT00950000183028.a.a.a.g.a.a	ENSGT00390000007488
Rainbow trout	MODERN SPECIES	21	usp9 (ENSOMYG00000022106)	MED14 (ENSOMYG00000021380)	ENSOMYG00000021145	ENSOMYG00000021086	RPL24 (ENSOMYG00000021073)	ENSOMYG00000021068	nxpe3 (ENSOMYG00000021060)	me3 (ENSOMYG00000020180)	ildr1b (ENSOMYG00000020100)	ildr2 (ENSOMYG00000020093)	ENSOMYG00000055200	ENSOMYG00000068583	ENSOMYG00000020067	ENSOMYG00000019984	pou2f1b (ENSOMYG00000019924)	LAMP1 (ENSOMYG00000019910) #22	grtp1b (ENSOMYG00000019905) #23	ENSOMYG00000073539	dcun1d2a (ENSOMYG00000007359)	tfdp1a (ENSOMYG00000007329) #27	ENSOMYG00000007275 #29	ENSOMYG00000062263	mettl21cb (ENSOMYG00000007251)	ENSOMYG00000007197	jam2b (ENSOMYG00000007220)	st6gal2a (ENSOMYG00000007142)	tmtops2b (ENSOMYG00000007022)	uxs1 (ENSOMYG00000006925)	ecrg4a (ENSOMYG00000006828)	ENSOMYG00000020512	nck2a (ENSOMYG00000006799)
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000155375.m.a	ENSGT00390000001021.w.b	ENSGT00950000182900.C.hb.a	ENSGT00510000047120.fb	ENSGT00950000183105.A.g.a	ENSGT00910000144283.c	ENSGT00950000182866.D.d.a.c.a.i.a.a	ENSGT00950000183134.c.a.a.ab	ENSGT00950000183058.A.b.a.c	ENSGT00950000183058.A.a.c.c	ENSGT00940000160248.a	ENSGT00940000166391	ENSGT00940000160215	ENSGT00940000157831.k.b	ENSGT00990000210160.a	ENSGT00950000182899.B.a.j.e #22	ENSGT00940000154927.c.b.c #23	ENSGT00940000157453.s.b	ENSGT00940000154652.p.b #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d.h	ENSGT00940000166048.a.a	ENSGT00940000165208.b.c.a	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a.i.a.b	ENSGT00940000157868.k.a	ENSGT00390000000145.h.b	ENSGT01100000263996	ENSGT00940000157728.a.b.d.b	ENSGT00950000183028.a.a.a.g.a.a	ENSGT00390000007488
Coho salmon	MODERN SPECIES	11	usp9 (ENSOKIG00005000925)	MED14 (ENSOKIG00005000391)	ENSOKIG00005001699	mpc2b (ENSOKIG00005001657)	rpl24 (ENSOKIG00005001647)	cep97 (ENSOKIG00005001638)	NXPE3 (ENSOKIG00005001634)	me3 (ENSOKIG00005001088)	ildr1b (ENSOKIG00005000895)	ildr2 (ENSOKIG00005000889)	ENSOKIG00005000882	zgc:92313 (ENSOKIG00005000880)	mapk7 (ENSOKIG00005000878)	pou2f1b (ENSOKIG00005000790)	ENSOKIG00005000733	LAMP1 (ENSOKIG00005000727) #22	grtp1b (ENSOKIG00005000722) #23	dcun1d2a (ENSOKIG00005000719)	tfdp1a (ENSOKIG00005000704) #27	GRK1 (ENSOKIG00005000685) #29	mettl21cb (ENSOKIG00005000680)	ENSOKIG00005000670	jam2b (ENSOKIG00005000655)	st6gal2a (ENSOKIG00005000642)	tmtops2b (ENSOKIG00005000623)	uxs1 (ENSOKIG00005000512)	ecrg4a (ENSOKIG00005000472)	nck2a (ENSOKIG00005000469)	FHL2 (ENSOKIG00005000461)	si:dkeyp-118h3.6 (ENSOKIG00005000453)	GPR45 (ENSOKIG00005000449)
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000155375.m.a	ENSGT00390000001021.w.b	ENSGT00950000182900.C.hb.a	ENSGT00510000047120.fb	ENSGT00950000183105.A.g.a	ENSGT00910000144283.c	ENSGT00950000182866.D.d.a.c.a.i.a.a	ENSGT00950000183134.c.a.a.ab	ENSGT00950000183058.A.b.a.c	ENSGT00950000183058.A.a.c.c	ENSGT00940000160248.a	ENSGT00940000166391	ENSGT00940000160215	ENSGT00940000157831.k.b	ENSGT00990000210160.a	ENSGT00950000182899.B.a.j.e #22	ENSGT00940000154927.c.b.c #23	ENSGT00940000157453.s.b	ENSGT00940000154652.p.b #27	ENSGT00940000159927.d.b #29	ENSGT00940000156596.d.h	ENSGT00940000166048.a.a	ENSGT00940000158714.d.b	ENSGT01100000263502.A.a.a.a.b.a.a.i.b	ENSGT00940000157868.k.a	ENSGT00390000000145.h.b	ENSGT01100000263996	ENSGT00940000157728.a.b.d.b	ENSGT00950000183028.a.a.a.g.a.a	ENSGT00390000007488	ENSGT00950000183001.a.b.b.i
Atlantic salmon	MODERN SPECIES	17	usp9 (ENSSSAG00000072629)	MED14 (ENSSSAG00000071073)	ENSSSAG00000090382	ENSSSAG00000068515	brp44 (ENSSSAG00000068458)	RL24 (ENSSSAG00000068449)	ENSSSAG00000068454	ENSSSAG00000083675	NXPE3 (ENSSSAG00000068443)	me3 (ENSSSAG00000068246)	ENSSSAG00000068226	ildr2 (ENSSSAG00000068222)	ENSSSAG00000102630	mapk7 (ENSSSAG00000068217)	pou2f1b (ENSSSAG00000067435)	LAMP1 (ENSSSAG00000067406) #22	grtp1b (ENSSSAG00000080740) #23	dcun1d2a (ENSSSAG00000067345)	tfdp1a (ENSSSAG00000067323) #27	ENSSSAG00000107290 #29	mettl21cb (ENSSSAG00000067309)	ENSSSAG00000067304	st6gal2a (ENSSSAG00000118445)	tmtops2b (ENSSSAG00000067287)	uxs1 (ENSSSAG00000067252)	ecrg4a (ENSSSAG00000067245)	ENSSSAG00000067240	nck2a (ENSSSAG00000067238)	ENSSSAG00000105481	GPR45 (ENSSSAG00000084938)	ENSSSAG00000113492
River trout	MODERN SPECIES	16	usp9 (ENSSTUG00000006104)	med14 (ENSSTUG00000004540)	dcaf6 (ENSSTUG00000017719)	mpc2b (ENSSTUG00000017644)	rpl24 (ENSSTUG00000017635)	ENSSTUG00000017627	nxpe3 (ENSSTUG00000017617)	me3 (ENSSTUG00000013815)	ildr1b (ENSSTUG00000013728)	ildr2 (ENSSTUG00000013719)	ENSSTUG00000013708	zgc:92313 (ENSSTUG00000013703)	mapk7 (ENSSTUG00000013688)	pou2f1b (ENSSTUG00000013570)	ENSSTUG00000013564	lamp1b (ENSSTUG00000013558) #22	grtp1b (ENSSTUG00000013546) #23	tfdp1a (ENSSTUG00000013499) #27	grk1a (ENSSTUG00000013464) #29	mettl21cb (ENSSTUG00000013459)	ENSSTUG00000013447	ENSSTUG00000013435	ENSSTUG00000013426	tmtops2b (ENSSTUG00000013390)	uxs1 (ENSSTUG00000012849)	ecrg4a (ENSSTUG00000012817)	ENSSTUG00000012808	nck2a (ENSSTUG00000012801)	FHL2 (ENSSTUG00000012766)	si:dkeyp-118h3.6 (ENSSTUG00000012764)	ENSSTUG00000012759
Salmoninae	ANCESTRAL SPECIES	295															ENSGT00940000157831.k.a	ENSGT00950000182899.B.a.j.f #22	ENSGT00940000154927.c.b.d #23	ENSGT00940000157453.s.a	ENSGT00940000154652.p.a #27	ENSGT00940000156596.d.g	ENSGT00940000165208.b	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a.j	ENSGT00940000157868.k.b	ENSGT00390000000145.h.a	ENSGT00940000157728.a.b.d.a	ENSGT00950000183028.a.a.a.g.a.b	ENSGT00950000183001.a.b.b.j	ENSGT00940000164385.a.a.a.a.a	ENSGT00390000017581.b.a.c.a	ENSGT00940000159390.g
Huchen	MODERN SPECIES	460															pou2f1b (ENSHHUG00000041475)	lamp1b (ENSHHUG00000041521) #22	grtp1b (ENSHHUG00000041524) #23	dcun1d2a (ENSHHUG00000041535)	tfdp1a (ENSHHUG00000041569) #27	grk1a (ENSHHUG00000041612) #29	mettl21cb (ENSHHUG00000041621)	jam2b (ENSHHUG00000041625)	ENSHHUG00000041637	tmtops2b (ENSHHUG00000041645)	ENSHHUG00000041650	uxs1 (ENSHHUG00000041652)	ecrg4a (ENSHHUG00000041659)	NCK2 (ENSHHUG00000041671)	FHL2 (ENSHHUG00000041678)	GPR45 (ENSHHUG00000041714)	ENSHHUG00000041722
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000155375.m.b	ENSGT00390000001021.w.a	ENSGT00940000160683	ENSGT00940000159677.a.b.w.a.a.b	ENSGT00940000159677.a.b.w.a.a.a	ENSGT00940000157829	ENSGT00950000182900.C.hb.b	ENSGT01000000221524	ENSGT00950000183105.A.g.b	ENSGT00910000144283.d	ENSGT00950000183134.c.a.a.`b	ENSGT00950000183058.A.b.a.d	ENSGT00950000183058.A.a.c.d	ENSGT00940000157831.k.a	ENSGT00990000210160.b	ENSGT00950000182899.B.a.j.f #22	ENSGT00940000154927.c.b.d #23	ENSGT00940000157453.s.a	ENSGT00940000154652.p.a #27	ENSGT00940000156596.d.g	ENSGT00940000165208.b	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a.j	ENSGT00940000157868.k.b	ENSGT00390000000145.h.a	ENSGT00940000157728.a.b.d.a	ENSGT00950000183028.a.a.a.g.a.b	ENSGT00950000183001.a.b.b.j	ENSGT00940000164385.a.a.a.a.a	ENSGT00390000017581.b.a.c.a	ENSGT00940000159390.g
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT00940000153244.B.i	ENSGT00940000155375.m.b	ENSGT00390000001021.w.a	ENSGT00940000160683	ENSGT00940000159677.a.b.w.a.a.b.a	ENSGT00940000159677.a.b.w.a.a.a	ENSGT00940000157829	ENSGT00950000182900.C.hb.b	ENSGT01000000221524	ENSGT00950000183105.A.g.b	ENSGT00910000144283.d	ENSGT00950000183134.c.a.a.`b	ENSGT00950000183058.A.a.c.d	ENSGT00940000157831.k.a	ENSGT00990000210160.b	ENSGT00950000182899.B.a.j.f #22	ENSGT00940000154927.c.b.d #23	ENSGT00940000157453.s.a	ENSGT00940000154652.p.a #27	ENSGT00940000156596.d.g	ENSGT00940000165208.b.d	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a.j	ENSGT00940000157868.k.b	ENSGT00390000000145.h.a	ENSGT00940000157728.a.b.d.a	ENSGT00950000183028.a.a.a.g.a.b	ENSGT00950000183001.a.b.b.j	ENSGT00940000164385.a.a.a.a.a	ENSGT00390000017581.b.a.c.a	ENSGT00940000159390.g
Rainbow trout	MODERN SPECIES	14	MED14 (ENSOMYG00000027685)	ENSOMYG00000045987	ENSOMYG00000077667	ENSOMYG00000059068	ENSOMYG00000045984	ENSOMYG00000045981	ENSOMYG00000055780	ENSOMYG00000045977	ENSOMYG00000045359	ENSOMYG00000045240	ENSOMYG00000045250	ENSOMYG00000045058	ildr2 (ENSOMYG00000045021)	pou2f1b (ENSOMYG00000044993)	ENSOMYG00000044983	lamp1b (ENSOMYG00000044979) #22	grtp1b (ENSOMYG00000050460) #23	dcun1d2a (ENSOMYG00000044961)	tfdp1a (ENSOMYG00000044942) #27	ENSOMYG00000073955	mettl21cb (ENSOMYG00000044927)	jam2b (ENSOMYG00000044919)	ENSOMYG00000054941	ENSOMYG00000044910	tmtops2b (ENSOMYG00000044900)	ecrg4a (ENSOMYG00000044894)	nck2a (ENSOMYG00000044892)	FHL2 (ENSOMYG00000044887)	GPR45 (ENSOMYG00000044883)	ENSOMYG00000044877	tmem182a (ENSOMYG00000006603)
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT00940000154443.e.d.a	ENSGT00940000153244.B.i	ENSGT00940000155375.m.b	ENSGT00390000001021.w.a	ENSGT00940000160683	ENSGT00940000159677.a.b.w.a.a.b.a	ENSGT00940000159677.a.b.w.a.a.a	ENSGT00940000157829	ENSGT00950000182900.C.hb.b	ENSGT01000000221524	ENSGT00950000183105.A.g.b	ENSGT00910000144283.d	ENSGT00950000183134.c.a.a.`b	ENSGT00950000183058.A.a.c.d	ENSGT00940000157831.k.a	ENSGT00950000182899.B.a.j.f #22	ENSGT00940000154927.c.b.d #23	ENSGT00940000157453.s.a	ENSGT00940000154652.p.a #27	ENSGT00940000156596.d.g	ENSGT00940000165208.b.d	ENSGT00940000157053.u.b	ENSGT01100000263502.A.a.a.a.b.a.a.j	ENSGT00940000157868.k.b	ENSGT00390000000145.h.a	ENSGT00940000157728.a.b.d.a	ENSGT00950000183028.a.a.a.g.a.b	ENSGT00950000183001.a.b.b.j	ENSGT00940000164385.a.a.a.a.a	ENSGT00390000017581.b.a.c.a	ENSGT00940000159390.g
Chinook salmon	MODERN SPECIES	18	usp9 (ENSOTSG00005043104)	med14 (ENSOTSG00005043141)	prmt2 (ENSOTSG00005043223)	ENSOTSG00005043224	ENSOTSG00005043225	gpr161b (ENSOTSG00005043226)	dcaf6 (ENSOTSG00005043230)	ENSOTSG00005043290	ENSOTSG00005043292	rpl24 (ENSOTSG00005043294)	cep97 (ENSOTSG00005043297)	me3 (ENSOTSG00005043303)	ildr2 (ENSOTSG00005045580)	pou2f1b (ENSOTSG00005045584)	ENSOTSG00005045585	lamp1b (ENSOTSG00005045586) #22	grtp1b (ENSOTSG00005045588) #23	dcun1d2a (ENSOTSG00005045589)	tfdp1a (ENSOTSG00005045591) #27	mettl21cb (ENSOTSG00005045603)	jam2b (ENSOTSG00005045605)	ENSOTSG00005045606	tmtops2b (ENSOTSG00005045608)	ecrg4a (ENSOTSG00005045609)	NCK2 (ENSOTSG00005045611)	FHL2 (ENSOTSG00005045635)	GPR45 (ENSOTSG00005045636)	ENSOTSG00005045637	tmem182a (ENSOTSG00005002658)	MFSD9 (ENSOTSG00005003026)	inpp4aa (ENSOTSG00005003125)
Coho salmon	MODERN SPECIES	18	ddx3xa (ENSOKIG00005042369)	rpl8 (ENSOKIG00005043165)	usp9 (ENSOKIG00005043328)	ENSOKIG00005043568	med14 (ENSOKIG00005006230)	prmt2 (ENSOKIG00005006570)	ugt1b1 (ENSOKIG00005006587)	ENSOKIG00005006599	gpr161b (ENSOKIG00005006626)	dcaf6 (ENSOKIG00005006730)	ENSOKIG00005008761	ENSOKIG00005008807	ENSOKIG00005008836	ME3 (ENSOKIG00005009085)	pou2f1b (ENSOKIG00005013226)	lamp1b (ENSOKIG00005013349) #22	grtp1b (ENSOKIG00005013354) #23	dcun1d2a (ENSOKIG00005013369)	tfdp1a (ENSOKIG00005013436) #27	mettl21cb (ENSOKIG00005013500)	jam2b (ENSOKIG00005013509)	ENSOKIG00005013534	tmtops2b (ENSOKIG00005013551)	UXS1 (ENSOKIG00005013646)	nck2a (ENSOKIG00005013671)	FHL2 (ENSOKIG00005013678)	GPR45 (ENSOKIG00005013686)	ENSOKIG00005013689	tmem182a (ENSOKIG00005013703)	MFSD9 (ENSOKIG00005013710)	inpp4aa (ENSOKIG00005013996)
Salmo	ANCESTRAL SPECIES	10	ENSGT00940000153244.B.i	ENSGT00940000155375.m.b	ENSGT00390000001021.w.a	ENSGT00940000160683	ENSGT00940000159677.a.b.w.a.a.a	ENSGT00940000157829	ENSGT00950000182900.C.hb.b	ENSGT01000000221524	ENSGT00950000183105.A.g.b	ENSGT00910000144283.d	ENSGT00950000183134.c.a.a.`b	ENSGT00950000183058.A.b.a.d	ENSGT00950000183058.A.a.c.d	ENSGT00940000157831.k.a	ENSGT00990000210160.b.a	ENSGT00950000182899.B.a.j.f #22	ENSGT00940000154927.c.b.d #23	ENSGT00940000157453.s.a	ENSGT00940000154652.p.a #27	ENSGT00940000156596.d.g	ENSGT00990000210160.b.b	ENSGT00940000165208.b	ENSGT00940000157053.u.b.c	ENSGT01100000263502.A.a.a.a.b.a.a.j	ENSGT00940000157868.k.b	ENSGT00940000157728.a.b.d.a	ENSGT00950000183028.a.a.a.g.a.b	ENSGT00950000183001.a.b.b.j	ENSGT00940000164385.a.a.a.a.a	ENSGT00390000017581.b.a.c.a	ENSGT00940000159390.g
River trout	MODERN SPECIES	12	rpl8 (ENSSTUG00000024568)	usp9 (ENSSTUG00000020247)	med14 (ENSSTUG00000018347)	prmt2 (ENSSTUG00000018284)	UGT1A1 (ENSSTUG00000018267)	ugt1b1 (ENSSTUG00000018244)	gpr161b (ENSSTUG00000018237)	dcaf6 (ENSSTUG00000015818)	rpl24 (ENSSTUG00000015666)	cep97 (ENSSTUG00000015619)	me3 (ENSSTUG00000012585)	ildr1b (ENSSTUG00000012442)	ildr2 (ENSSTUG00000012432)	pou2f1b (ENSSTUG00000012222)	ENSSTUG00000012213	lamp1b (ENSSTUG00000012196) #22	grtp1b (ENSSTUG00000012182) #23	dcun1d2a (ENSSTUG00000012110)	tfdp1a (ENSSTUG00000011945) #27	mettl21cb (ENSSTUG00000011921)	ENSSTUG00000011898	jam2b (ENSSTUG00000011882)	ENSSTUG00000011873	tmtops2b (ENSSTUG00000011827)	uxs1 (ENSSTUG00000011790)	nck2a (ENSSTUG00000011783)	FHL2 (ENSSTUG00000011775)	GPR45 (ENSSTUG00000011771)	ENSSTUG00000011767	tmem182a (ENSSTUG00000011762)	MFSD9 (ENSSTUG00000011759)
Atlantic salmon	MODERN SPECIES	13	rpl8 (ENSSSAG00000079373)	usp9 (ENSSSAG00000079488)	MED14 (ENSSSAG00000080229)	ENSSSAG00000080385	ENSSSAG00000080390	gpr161 (ENSSSAG00000080401)	dcaf6 (ENSSSAG00000080425)	ENSSSAG00000103085	ENSSSAG00000080562	ENSSSAG00000112617	MAON (ENSSSAG00000080588)	ENSSSAG00000111809	ildr2 (ENSSSAG00000080666)	pou2f1b (ENSSSAG00000080680)	ENSSSAG00000080733	lamp1b (ENSSSAG00000080737) #22	grtp1b (ENSSSAG00000087378) #23	tfdp1a (ENSSSAG00000080780) #27	dcun1d2a (ENSSSAG00000109530)	mettl21cb (ENSSSAG00000080799)	ENSSSAG00000080804	ENSSSAG00000080812	ENSSSAG00000080820	ENSSSAG00000098456	UXS1 (ENSSSAG00000080830)	ENSSSAG00000112118	ENSSSAG00000080833	ENSSSAG00000093702	nck2a (ENSSSAG00000080835)	FHL2 (ENSSSAG00000080837)	GPR45 (ENSSSAG00000080840)
Northern pike	MODERN SPECIES	15	PTP4A3 (ENSELUG00000021434)	dync1i1 (ENSELUG00000021407)	ZFAT (ENSELUG00000021358)	rbfa (ENSELUG00000021266)	gpr161b (ENSELUG00000021246)	dcaf6 (ENSELUG00000021232)	mpc2b (ENSELUG00000021166)	rpl24 (ENSELUG00000021155)	cep97 (ENSELUG00000021128)	nxpe3 (ENSELUG00000021085)	me3 (ENSELUG00000021069)	ildr1b (ENSELUG00000021014)	ildr2 (ENSELUG00000020965)	ENSELUG00000020919	pou2f1b (ENSELUG00000020909)	lamp1b (ENSELUG00000020880) #22	grtp1b (ENSELUG00000020861) #23	dcun1d2a (ENSELUG00000020833)	tfdp1a (ENSELUG00000020821) #27	grk1a (ENSELUG00000020795) #29	mettl21cb (ENSELUG00000020773)	ENSELUG00000027736	jam2b (ENSELUG00000020711)	st6gal2a (ENSELUG00000020687)	tmtops2b (ENSELUG00000020674)	uxs1 (ENSELUG00000020652)	ECRG4 (ENSELUG00000034561)	ENSELUG00000027875	nck2a (ENSELUG00000020579)	FHL2 (ENSELUG00000020555)	si:dkeyp-118h3.6 (ENSELUG00000020535)
Otomorpha	ANCESTRAL SPECIES	93	ENSGT00940000154517.mb	ENSGT00940000155202	ENSGT00520000055625.a	ENSGT00940000164470.a	ENSGT00950000182827.A	ENSGT00940000158556	ENSGT00940000157829.m.b	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000157231.b	ENSGT00940000179735	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00720000109997	ENSGT00940000157860.p	ENSGT00730000111141.ib
Clupeiformes	ANCESTRAL SPECIES	30	ENSGT00940000156609	ENSGT00950000183072.b.b.a	ENSGT00530000063779.A.e.a	ENSGT00940000156219.f	ENSGT00940000154621.a.a	ENSGT01030000234515.a.a.b.j	ENSGT00510000048120	ENSGT00390000002220	ENSGT00950000183150.a.b	ENSGT00940000166545	ENSGT00940000158665.c	ENSGT00940000164857	ENSGT00940000157232	ENSGT00940000165617	ENSGT00940000163195.B.b	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000156596.d	ENSGT00940000166048.a.a	ENSGT00940000165208.b	ENSGT00940000155799	ENSGT00530000063252.a.b.a.b	ENSGT00720000109997	ENSGT00940000157860.p	ENSGT00950000182936.a.a.a	ENSGT00940000164246.C.d.a	ENSGT00940000155116.a	ENSGT00940000166972	ENSGT00940000155686
Atlantic herring	MODERN SPECIES	11	ENSCHAG00000000100	B3GALT1 (ENSCHAG00000000102)	STK39 (ENSCHAG00000000162)	CERS6 (ENSCHAG00000000629)	nostrin (ENSCHAG00000000969)	spc25 (ENSCHAG00000001611)	G6PC2 (ENSCHAG00000001659)	ENSCHAG00000001683	dhrs9 (ENSCHAG00000001787)	rdh1 (ENSCHAG00000001805)	lrp2a (ENSCHAG00000001929)	zgc:172182 (ENSCHAG00000005978)	col28a2a (ENSCHAG00000005997)	pou2f1b (ENSCHAG00000006127)	ENSCHAG00000006170	lamp1b (ENSCHAG00000006182) #22	grtp1b (ENSCHAG00000006200) #23	dcun1d2a (ENSCHAG00000006230)	tfdp1a (ENSCHAG00000006378) #27	mettl21cb (ENSCHAG00000006490)	ENSCHAG00000006569	jam2b (ENSCHAG00000006604)	gabpa (ENSCHAG00000006644)	appb (ENSCHAG00000006904)	ENSCHAG00000015903	MBNL2 (ENSCHAG00000015919)	RAP2A (ENSCHAG00000015991)	FARP1 (ENSCHAG00000016107)	DOCK9 (ENSCHAG00000020149)	SLC15A1 (ENSCHAG00000023630)	STK24 (ENSCHAG00000024093)
Denticle herring	MODERN SPECIES	19	clasp1a (ENSDCDG00000025909)	nifk (ENSDCDG00000031857)	ENSDCDG00000031863	tsn (ENSDCDG00000031865)	si:dkey-91i10.2 (ENSDCDG00000031872)	eaf2 (ENSDCDG00000031877)	cyp27a3 (ENSDCDG00000031886)	zgc:162707 (ENSDCDG00000031889)	nme9 (ENSDCDG00000031895)	SMARCAL1 (ENSDCDG00000031906)	ENSDCDG00000032207	zgc:172182 (ENSDCDG00000032208)	col28a2a (ENSDCDG00000032212)	pou2f1b (ENSDCDG00000032228)	ENSDCDG00000032238	lamp1b (ENSDCDG00000032240) #22	grtp1b (ENSDCDG00000032242) #23	dcun1d2a (ENSDCDG00000032243)	tfdp1a (ENSDCDG00000032247) #27	mettl21cb (ENSDCDG00000014044)	jam2b (ENSDCDG00000014070)	gabpa (ENSDCDG00000014082)	appb (ENSDCDG00000014326)	ENSDCDG00000016982	ncam2 (ENSDCDG00000017027)	ENSDCDG00000020452	fhip1b (ENSDCDG00000020456)	ENSDCDG00000020459	ENSDCDG00000020460	hpxa (ENSDCDG00000020466)	ENSDCDG00000021471
Otophysi	ANCESTRAL SPECIES	45	ENSGT00940000155202	ENSGT00520000055625.a	ENSGT00940000164470.a	ENSGT00950000182827.A	ENSGT00940000158556	ENSGT00940000157829.m.b	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00940000174992	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000179735	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23
Characiphysae	ANCESTRAL SPECIES	3	ENSGT00940000154517.mb	ENSGT00940000155202	ENSGT00520000055625.a	ENSGT00940000164470.a	ENSGT00950000182827.A	ENSGT00940000158556	ENSGT00940000157829.m.b	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000179735	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00390000018369	ENSGT00940000158486	ENSGT00940000158108	ENSGT00940000156711.k.a	ENSGT00390000001134.a.a	ENSGT01100000263536.C	ENSGT01030000234518.C.a.b.a.b.a	ENSGT00950000184597	ENSGT01030000234518.C.a.b.a.a	ENSGT00390000017163	ENSGT00940000154200.A.a	ENSGT00940000160645.o	ENSGT00940000158521	ENSGT00940000155015.h
Characiphysae_b	ANCESTRAL SPECIES	60	ENSGT00940000154517.mb	ENSGT00940000155202	ENSGT00520000055625.a	ENSGT00940000164470.a	ENSGT00950000182827.A	ENSGT00940000158556	ENSGT00940000157829.m.b	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000179735	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00390000018369	ENSGT00940000158486	ENSGT00940000158108	ENSGT00940000156711.k.a	ENSGT00390000001134.a.a	ENSGT01100000263536.C	ENSGT01030000234518.C.a.b.a.b.a	ENSGT00950000184597	ENSGT01030000234518.C.a.b.a.a	ENSGT00390000017163	ENSGT00940000154200.A.a	ENSGT00940000160645.o	ENSGT00940000158521	ENSGT00940000155015.h
Characoidei	ANCESTRAL SPECIES	1	ENSGT00940000154517.mb	ENSGT00940000155202	ENSGT00520000055625.a	ENSGT00940000164470.a	ENSGT00950000182827.A	ENSGT00940000158556	ENSGT00940000157829.m.b	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000179735	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00390000018369	ENSGT00940000158486	ENSGT00940000158108	ENSGT00940000156711.k.a	ENSGT00390000001134.a.a	ENSGT01100000263536.C	ENSGT01030000234518.C.a.b.a.b.a	ENSGT00950000184597	ENSGT01030000234518.C.a.b.a.a	ENSGT00390000017163	ENSGT00940000154200.A.a	ENSGT00940000160645.o	ENSGT00940000158521	ENSGT00940000155015.h
Red-bellied piranha	MODERN SPECIES	37	KDM6A (ENSPNAG00000023014)	DIPK2B (ENSPNAG00000023041)	ccdc80 (ENSPNAG00000023076)	slc35a5 (ENSPNAG00000023082)	f5 (ENSPNAG00000023096)	gpr161b (ENSPNAG00000023100)	dcaf6 (ENSPNAG00000023168)	mpc2b (ENSPNAG00000023184)	nxpe3 (ENSPNAG00000023204)	me3 (ENSPNAG00000023243)	ildr1b (ENSPNAG00000023255)	ildr2 (ENSPNAG00000023280)	ENSPNAG00000023290	pou2f1b (ENSPNAG00000023329)	ENSPNAG00000023341	lamp1b (ENSPNAG00000023347) #22	grtp1b (ENSPNAG00000023379) #23	ENSPNAG00000023393	TBC1D4 (ENSPNAG00000023496)	klf12b (ENSPNAG00000023514)	KLF5 (ENSPNAG00000023524)	dachd (ENSPNAG00000023569)	GPR18 (ENSPNAG00000023582)	gpr183a (ENSPNAG00000023592)	ENSPNAG00000023607	si:ch211-184m13.4 (ENSPNAG00000023609)	clybl (ENSPNAG00000023654)	zic5 (ENSPNAG00000023667)	ZIC2 (ENSPNAG00000023682)
Mexicana tetra	MODERN SPECIES	10	ENSAMXG00000032865	ENSAMXG00000032377	slc35a5 (ENSAMXG00000012443)	f5 (ENSAMXG00000012372)	gpr161b (ENSAMXG00000002416)	dcaf6 (ENSAMXG00000002412)	mpc2b (ENSAMXG00000032767)	nxpe3 (ENSAMXG00000038717)	me3 (ENSAMXG00000002394)	ildr1b (ENSAMXG00000042828)	ildr2 (ENSAMXG00000002386)	ENSAMXG00000002379	ENSAMXG00000037121	pou2f1b (ENSAMXG00000002371)	ENSAMXG00000040590	lamp1b (ENSAMXG00000038307) #22	grtp1b (ENSAMXG00000035177) #23	ENSAMXG00000037854	TBC1D4 (ENSAMXG00000002349)	klf12b (ENSAMXG00000002340)	KLF5 (ENSAMXG00000002337)	dachd (ENSAMXG00000042864)	GPR18 (ENSAMXG00000026070)	gpr183a (ENSAMXG00000026069)	clybl (ENSAMXG00000042789)	zic5 (ENSAMXG00000002323)	ZIC2 (ENSAMXG00000002320)	tmtc4 (ENSAMXG00000002316)	ENSAMXG00000002297	nalcn (ENSAMXG00000002279)	itgbl1 (ENSAMXG00000002270)
Electric eel	MODERN SPECIES	87	ENSEEEG00000005389	ccdc80 (ENSEEEG00000005388)	slc35a5 (ENSEEEG00000005387)	f5 (ENSEEEG00000005385)	gpr161b (ENSEEEG00000005383)	dcaf6 (ENSEEEG00000005382)	mpc2b (ENSEEEG00000005381)	nxpe3 (ENSEEEG00000005379)	ME3 (ENSEEEG00000005167)	ildr1b (ENSEEEG00000005135)	ildr2 (ENSEEEG00000005134)	ENSEEEG00000005132	ENSEEEG00000005131	pou2f1b (ENSEEEG00000005130)	ENSEEEG00000005129	lamp1b (ENSEEEG00000005128) #22	TBC1D4 (ENSEEEG00000005072)	klf12b (ENSEEEG00000005058)	KLF5 (ENSEEEG00000005056)	dachd (ENSEEEG00000005050)	GPR18 (ENSEEEG00000005049)	gpr183a (ENSEEEG00000005048)	ENSEEEG00000005047	septin9a (ENSEEEG00000004607)	TNRC6C (ENSEEEG00000004570)	znf207a (ENSEEEG00000004566)	slc25a23b (ENSEEEG00000004565)	timm29 (ENSEEEG00000004562)	yipf2 (ENSEEEG00000004541)	carm1 (ENSEEEG00000004414)	ENSEEEG00000004406
Channel catfish	MODERN SPECIES	25	ENSIPUG00000014749	ENSIPUG00000014733	ENSIPUG00000014720	ENSIPUG00000014702	ENSIPUG00000014690	ENSIPUG00000014646	ENSIPUG00000014625	ENSIPUG00000014602	ENSIPUG00000014593	me3 (ENSIPUG00000014535)	ENSIPUG00000014507	ildr2 (ENSIPUG00000014468)	ENSIPUG00000014457	pou2f1b (ENSIPUG00000014426)	cd247l (ENSIPUG00000014377)	lamp1b (ENSIPUG00000014363) #22	grtp1b (ENSIPUG00000014340) #23	commd6 (ENSIPUG00000014288)	tbc1d4 (ENSIPUG00000014194)	klf12 (ENSIPUG00000014174)	klf5 (ENSIPUG00000014165)	dachd (ENSIPUG00000014128)	gpr18 (ENSIPUG00000014111)	gpr183a (ENSIPUG00000014099)	ENSIPUG00000014085	si:ch211-184m13.4 (ENSIPUG00000014083)	clybl (ENSIPUG00000014045)	zic5 (ENSIPUG00000014029)	zic2 (ENSIPUG00000014025)	tmtc4 (ENSIPUG00000013937)	ENSIPUG00000013904
Cyprinoidei	ANCESTRAL SPECIES	80	ENSGT00520000055625.a	ENSGT00940000164470.a	ENSGT00950000182827.A	ENSGT00940000158556	ENSGT00940000157829.m.b	ENSGT00950000182900.C	ENSGT00510000047120.fb	ENSGT00950000182866.D.d.a.c.a	ENSGT00950000183134.c.a.a	ENSGT00940000174992	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c	ENSGT00940000160248.a	ENSGT00940000157831.m	ENSGT00390000003894	ENSGT00950000182899.B.a.j #22	ENSGT00940000154927.c.b #23	ENSGT00390000001021	ENSGT00610000087455	ENSGT00950000182972.a.a.a.a.b	ENSGT00940000163491	ENSGT00940000154287.a	ENSGT00940000178781	ENSGT00940000162883	ENSGT00940000162413	ENSGT01050000244840.B	ENSGT00390000017146.b #33	ENSGT00950000182950.B #32	ENSGT00940000157453.s	ENSGT00940000154652.p #27	ENSGT00940000156596.d
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	16	ENSGT00950000182827.A.b	ENSGT00940000158556.a	ENSGT00940000157829.m.b	ENSGT00950000182900.C.w.b	ENSGT00510000047120.fb.a	ENSGT00950000182866.D.d.a.c.a.e	ENSGT00950000183134.c.a.a.u.b	ENSGT00950000182900.C.w.a	ENSGT00510000047120.fb.b	ENSGT00950000182866.D.d.a.c.a.f	ENSGT00950000183134.c.a.a.u.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c.a	ENSGT00940000160248.a	ENSGT00940000157831.m.a	ENSGT00950000182899.B.a.j.g #22	ENSGT00940000154927.c.b.b #23	ENSGT00390000001021.v	ENSGT00950000182972.a.a.a.a.b.m	ENSGT00940000163491.o	ENSGT00940000154287.a.k	ENSGT00940000178781.b	ENSGT00940000162883.s.a	ENSGT00940000162413.b	ENSGT01050000244840.B.s	ENSGT00390000017146.b.o.a #33	ENSGT00950000182950.B.i #32	ENSGT00940000157453.s.g.a	ENSGT00940000154652.p.j #27	ENSGT00940000156596.d	ENSGT00940000165208.b.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	49	ccdc80 (ENSCARG00000008046)	slc35a5 (ENSCARG00000008041)	f5 (ENSCARG00000007197)	gpr161b (ENSCARG00000007093)	dcaf6 (ENSCARG00000006410)	mpc2b (ENSCARG00000006309)	ENSCARG00000006280	ENSCARG00000006271	nxpe3 (ENSCARG00000006256)	ENSCARG00000006244	me3 (ENSCARG00000005256)	ildr1b (ENSCARG00000005194)	ildr2 (ENSCARG00000005187)	pou2f1b (ENSCARG00000005173)	ENSCARG00000005152	lamp1b (ENSCARG00000005143) #22	grtp1b (ENSCARG00000005128) #23	med14 (ENSCARG00000004944)	ENSCARG00000004855	ENSCARG00000003903	shox (ENSCARG00000003760)	ENSCARG00000003749	slc25a6 (ENSCARG00000003741)	asmtl (ENSCARG00000003733)	P2RY8 (ENSCARG00000003731)	upf3a (ENSCARG00000003723) #33	cdc16 (ENSCARG00000003579) #32	dcun1d2a (ENSCARG00000003526)	tfdp1a (ENSCARG00000003473) #27	mettl21cb (ENSCARG00000003455)	gabpa (ENSCARG00000003447)
Goldfish	MODERN SPECIES	49	zgc:162944 (ENSCARG00000013498)	acod1 (ENSCARG00000013515)	kctd12.1 (ENSCARG00000049850)	lmo7a (ENSCARG00000049954)	uchl3 (ENSCARG00000050085)	ENSCARG00000050112	crygm7 (ENSCARG00000050145)	ENSCARG00000050152	crygm6 (ENSCARG00000050163)	si:dkey-57a22.15 (ENSCARG00000050178)	ENSCARG00000050226	crygm2d13 (ENSCARG00000050297)	tmtc4 (ENSCARG00000050347)	pou2f1b (ENSCARG00000050768)	cd247l (ENSCARG00000050780)	lamp1b (ENSCARG00000050787) #22	grtp1b (ENSCARG00000050799) #23	med14 (ENSCARG00000050826)	ENSCARG00000051108	zgc:162707 (ENSCARG00000051136)	ehhadh (ENSCARG00000051156)	tmem41aa (ENSCARG00000051194)	igf2bp2a (ENSCARG00000051497)	tra2b (ENSCARG00000055456)	TSPEAR (ENSCARG00000055474)	ENSCARG00000055496	ENSCARG00000055538	ENSCARG00000055613	glb1l (ENSCARG00000056680)	ANKZF1 (ENSCARG00000057804)	ENSCARG00000057849
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000182899.B.a.j.g #22
Golden-line barbel	MODERN SPECIES	3842																lamp1b (ENSSGRG00000007309) #22	ENSSGRG00000007308 #23
Cyprininae	ANCESTRAL SPECIES	208													ENSGT00950000183058.A.a.c.b	ENSGT00940000157831.m.b	ENSGT00390000003894.a.a	ENSGT00950000182899.B.a.j.h #22	ENSGT00940000154927.c.b.a #23	ENSGT00390000001021.u	ENSGT00950000182972.a.a.a.a.b.n	ENSGT00940000163491.p	ENSGT00940000154287.a.l	ENSGT00940000178781.a	ENSGT00940000162883.s.b	ENSGT00940000162413.a	ENSGT01050000244840.B.t	ENSGT00390000017146.b.o.b #33	ENSGT00950000182950.B.j #32	ENSGT00940000157453.s.h	ENSGT00940000157453.s.g.b	ENSGT00940000154652.p.i #27	ENSGT00940000165208.b.a
Goldfish	MODERN SPECIES	27	ENSCARG00000069799	fundc1 (ENSCARG00000069796)	ENSCARG00000049200	DIPK2B (ENSCARG00000047301)	ENSCARG00000047291	ccdc80 (ENSCARG00000047281)	slc35a5 (ENSCARG00000047245)	dcaf6 (ENSCARG00000047048)	mpc2b (ENSCARG00000047019)	nxpe3 (ENSCARG00000047007)	me3 (ENSCARG00000046504)	ildr1b (ENSCARG00000046448)	ildr2 (ENSCARG00000046420)	pou2f1b (ENSCARG00000046369)	cd247l (ENSCARG00000046350)	lamp1b (ENSCARG00000046321) #22	grtp1b (ENSCARG00000046280) #23	med14 (ENSCARG00000046101)	ENSCARG00000046052	ENSCARG00000045747	shox (ENSCARG00000045709)	ENSCARG00000045696	slc25a6 (ENSCARG00000045656)	P2RY8 (ENSCARG00000045632)	upf3a (ENSCARG00000045499) #33	cdc16 (ENSCARG00000045192) #32	dcun1d2a (ENSCARG00000045050)	tfdp1a (ENSCARG00000045000) #27	jam2b (ENSCARG00000044948)	gabpa (ENSCARG00000044910)	appb (ENSCARG00000034363)
Cyprininae_a	ANCESTRAL SPECIES	31	ENSGT00940000155202.d	ENSGT00520000055625.a.g	ENSGT00940000164470.a.b	ENSGT00950000182827.A.a	ENSGT00940000158556.b	ENSGT00940000157829.m.b.a	ENSGT00950000182900.C.w.a	ENSGT00510000047120.fb.b	ENSGT00950000182866.D.d.a.c.a.f	ENSGT00950000183134.c.a.a.u.a	ENSGT00950000183058.A.b.a	ENSGT00950000183058.A.a.c.b	ENSGT00940000160248.a.b	ENSGT00940000157831.m.b	ENSGT00390000003894.a.a	ENSGT00950000182899.B.a.j.h #22	ENSGT00940000154927.c.b.a #23	ENSGT00390000001021.u	ENSGT00950000182972.a.a.a.a.b.n	ENSGT00940000163491.p	ENSGT00940000154287.a.l	ENSGT00940000178781.a.a	ENSGT00940000162883.s.b	ENSGT00940000162413.a	ENSGT01050000244840.B.t	ENSGT00390000017146.b.o.b #33	ENSGT00950000182950.B.i #32	ENSGT00940000157453.s.g.b	ENSGT00940000154652.p.i #27	ENSGT00940000165208.b.a	ENSGT00940000155799.p
Golden-line barbel	MODERN SPECIES	208	fundc1 (ENSSGRG00000047056)	ENSSGRG00000035879	DIPK2B (ENSSGRG00000035689)	ccdc80 (ENSSGRG00000035687)	ENSSGRG00000035686	slc35a5 (ENSSGRG00000035682)	gpr161b (ENSSGRG00000035675)	dcaf6 (ENSSGRG00000035674)	mpc2b (ENSSGRG00000035553)	nxpe3 (ENSSGRG00000035548)	me3 (ENSSGRG00000035150)	ENSSGRG00000035141	ENSSGRG00000035140	pou2f1b (ENSSGRG00000035138)	cd247l (ENSSGRG00000035137)	lamp1b (ENSSGRG00000035135) #22	ENSSGRG00000035134	med14 (ENSSGRG00000034494)	ENSSGRG00000034468	ENSSGRG00000034315	shox (ENSSGRG00000034313)	ENSSGRG00000034312	slc25a6 (ENSSGRG00000034168)	asmtl (ENSSGRG00000034144)	P2RY8 (ENSSGRG00000034143)	upf3a (ENSSGRG00000034141) #33	cdc16 (ENSSGRG00000033643) #32	ENSSGRG00000033638	tfdp1a (ENSSGRG00000033631) #27	jam2b (ENSSGRG00000033629)	gabpa (ENSSGRG00000033452)
Common carp reference	MODERN SPECIES	41	fundc1 (ENSCCRG00000019290)	ENSCCRG00000028899	DIPK2B (ENSCCRG00000040379)	slc35a5 (ENSCCRG00000074095)	ccdc80 (ENSCCRG00000053691)	f5 (ENSCCRG00000034064)	gpr161b (ENSCCRG00000047380)	dcaf6 (ENSCCRG00000034711)	mpc2b (ENSCCRG00000055492)	ENSCCRG00000079768	me3 (ENSCCRG00000078866)	ildr1b (ENSCCRG00000001334)	ildr2 (ENSCCRG00000014048)	pou2f1b (ENSCCRG00000072522)	cd247l (ENSCCRG00000062905)	lamp1b (ENSCCRG00000014037) #22	grtp1b (ENSCCRG00000014170) #23	med14 (ENSCCRG00000014072)	ENSCCRG00000058691	shox (ENSCCRG00000070115)	ENSCCRG00000065885	slc25a6 (ENSCCRG00000069361)	ENSCCRG00000069682	P2RY8 (ENSCCRG00000061575)	upf3a (ENSCCRG00000002317) #33	cdc16 (ENSCCRG00000036317) #32	dcun1d2a (ENSCCRG00000038217)	tfdp1a (ENSCCRG00000038626) #27	jam2b (ENSCCRG00000043417)	gabpa (ENSCCRG00000044033)	appb (ENSCCRG00000044049)
Zebrafish	MODERN SPECIES	24	KDM6A (ENSDARG00000061759)	DIPK2B (ENSDARG00000061747)	ccdc80 (ENSDARG00000000002)	slc35a5 (ENSDARG00000000001)	f5 (ENSDARG00000055705)	gpr161b (ENSDARG00000055659)	dcaf6 (ENSDARG00000078311)	mpc2b (ENSDARG00000024478)	nxpe3 (ENSDARG00000061690)	me3 (ENSDARG00000002305)	ildr1b (ENSDARG00000040910)	ildr2 (ENSDARG00000014180)	ENSDARG00000040898	pou2f1b (ENSDARG00000007996)	cd247l (ENSDARG00000077240)	lamp1b (ENSDARG00000092610) #22	grtp1b (ENSDARG00000030269) #23	med14 (ENSDARG00000009953)	ENSDARG00000094660	ENSDARG00000074225	ENSDARG00000076004	shox (ENSDARG00000025891)	crlf2 (ENSDARG00000090632)	slc25a6 (ENSDARG00000005853)	asmtl (ENSDARG00000021433)	P2RY8 (ENSDARG00000055560)	upf3a (ENSDARG00000069297) #33	cdc16 (ENSDARG00000055470) #32	dcun1d2a (ENSDARG00000040838)	tfdp1a (ENSDARG00000019293) #27	mettl21cb (ENSDARG00000055437)
Spotted gar	MODERN SPECIES	655	GPA33 (ENSLOCG00000009679)	ENSLOCG00000009686	dusp27 (ENSLOCG00000009695)	pou2f1b (ENSLOCG00000009711)	CD247 (ENSLOCG00000009728)	creg1 (ENSLOCG00000009735)	ENSLOCG00000017804	ENSLOCG00000009739	ENSLOCG00000009754	f7l (ENSLOCG00000009761) #16	f7 (ENSLOCG00000009765) ##16	f10 (ENSLOCG00000009779) #17	f10 (ENSLOCG00000009794) #17	pcid2 (ENSLOCG00000009805) #19	cul4a (ENSLOCG00000009814) #21	LAMP1 (ENSLOCG00000009839) #22	grtp1b (ENSLOCG00000009858) #23	adprhl1 (ENSLOCG00000009871) #25	dcun1d2a (ENSLOCG00000009879)	TMCO3 (ENSLOCG00000009887) #26	tfdp1a (ENSLOCG00000009902) #27	ATP4B (ENSLOCG00000009911) #28	grk1a (ENSLOCG00000009923) #29	ENSLOCG00000009934	ENSLOCG00000009953	pros1 (ENSLOCG00000009972)	RASA3 (ENSLOCG00000009993) #31	TPP2 (ENSLOCG00000010014)	mettl21cb (ENSLOCG00000010045)	mettl21e (ENSLOCG00000010052)	ENSLOCG00000010061
Reedfish	MODERN SPECIES	12	ildr1a (ENSECRG00000002446)	ILDR2 (ENSECRG00000002435)	ENSECRG00000002425	GPA33 (ENSECRG00000002415)	ENSECRG00000002377	dusp27 (ENSECRG00000002295)	pou2f1b (ENSECRG00000002245)	CD247 (ENSECRG00000002223)	creg1 (ENSECRG00000002206)	ENSECRG00000002191	f7l (ENSECRG00000002167) #16	f10 (ENSECRG00000002150) #17	f10 (ENSECRG00000002094) #17	pcid2 (ENSECRG00000002065) #19	cul4a (ENSECRG00000001982) #21	LAMP1 (ENSECRG00000001921) #22	grtp1b (ENSECRG00000001898) #23	adprhl1 (ENSECRG00000001883) #25	dcun1d2a (ENSECRG00000001864)	TMCO3 (ENSECRG00000001835) #26	tfdp1a (ENSECRG00000001780) #27	ATP4B (ENSECRG00000001642) #28	grk1a (ENSECRG00000001597) #29	ENSECRG00000001577	ENSECRG00000001548	pros1 (ENSECRG00000001522)	RASA3 (ENSECRG00000001322) #31	TPP2 (ENSECRG00000001187)	mettl21cb (ENSECRG00000001152)	mettl21e (ENSECRG00000001136)	ENSECRG00000001110