Tetrapoda	ANCESTRAL SPECIES	87	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00390000004003	ENSGT00390000000068	ENSGT01030000235645	ENSGT00950000182953.B.a	ENSGT00390000017181	ENSGT00390000001566	ENSGT00940000160916	ENSGT00940000161702
Amniota	ANCESTRAL SPECIES	58	ENSGT00940000163296 #9	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00390000004003	ENSGT00390000000068	ENSGT00940000166253	ENSGT01030000235645	ENSGT00950000182953.B.a	ENSGT00390000017181	ENSGT00390000001566
Mammalia	ANCESTRAL SPECIES	36	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00390000004003	ENSGT00390000000068	ENSGT00950000182953.B.a	ENSGT00390000017181	ENSGT00390000001566	ENSGT00390000013192	ENSGT00390000014089
Theria	ANCESTRAL SPECIES		ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b #36	ENSGT01050000244883.A.a.a.b.x ##36	ENSGT00940000162509	ENSGT00940000154270	ENSGT00940000162480	ENSGT01050000244883.A.a.a.a.a ##36	ENSGT00530000064313	ENSGT00940000155819	ENSGT00940000163545	ENSGT00940000164297	ENSGT00940000163595
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b #36	ENSGT00940000162509	ENSGT00940000154460.a	ENSGT00940000164102	ENSGT00940000155819.d	ENSGT00940000163545.a
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Laurasiatheria	ANCESTRAL SPECIES	21	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718 #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Suina	ANCESTRAL SPECIES	19	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000164097 #37
Pig	MODERN SPECIES	9	KDM7A (ENSSSCG00000016501) #7	ENSSSCG00000039349 #8	SLC37A3 (ENSSSCG00000032266) #9	RAB19 (ENSSSCG00000038693) #10	MKRN1 (ENSSSCG00000016498) #11	DENND2A (ENSSSCG00000016497) #12	ADCK2 (ENSSSCG00000016496) #13	NDUFB2 (ENSSSCG00000032390) #14	BRAF (ENSSSCG00000016494) #15	ENSSSCG00000041343 #16	MRPS33 (ENSSSCG00000013470) #17	TMEM178B (ENSSSCG00000016493) #18	AGK (ENSSSCG00000016492) #19	DENND11 (ENSSSCG00000016491) #20	WEE2 (ENSSSCG00000016489) #21	SSBP1 (ENSSSCG00000016488) #22	TAS2R3 (ENSSSCG00000028394) #23	TAS2R4 (ENSSSCG00000021525) #24	PRSS37 (ENSSSCG00000029612) #25	ENSSSCG00000027039 #26	OR9A1P (ENSSSCG00000061025) #27	ENSSSCG00000036925 #28	CLEC5A (ENSSSCG00000021933) #29	MGAM (ENSSSCG00000034639) #30	MGAM2 (ENSSSCG00000016487) #31	ENSSSCG00000016486 #32	ENSSSCG00000037885 #33	PRSS58 (ENSSSCG00000016485) #34	ENSSSCG00000016484 #35	ENSSSCG00000036013 #36	TRBV3-1 (ENSSSCG00000047566) #37
Chacoan peccary	MODERN SPECIES	115	SLC37A3 (ENSCWAG00000016357) #9	RAB19 (ENSCWAG00000016413) #10	MKRN1 (ENSCWAG00000016439) #11	DENND2A (ENSCWAG00000016505) #12	ADCK2 (ENSCWAG00000016718) #13	NDUFB2 (ENSCWAG00000016781) #14	BRAF (ENSCWAG00000016905) #15	ENSCWAG00000017237	ENSCWAG00000017265	ENSCWAG00000017296	ENSCWAG00000017305 #17	TMEM178B (ENSCWAG00000017339) #18	AGK (ENSCWAG00000017395) #19	DENND11 (ENSCWAG00000017576) #20	WEE2 (ENSCWAG00000017685) #21	SSBP1 (ENSCWAG00000017760) #22	TAS2R3 (ENSCWAG00000017788) #23	TAS2R4 (ENSCWAG00000017801) #24	PRSS37 (ENSCWAG00000017816) #25	OR9A1P (ENSCWAG00000017858) #27	CLEC5A (ENSCWAG00000017884) #29	MGAM (ENSCWAG00000018138) #30	ENSCWAG00000018364 #31	ENSCWAG00000018429	ENSCWAG00000018564 #32	PRSS58 (ENSCWAG00000018631) #34	ENSCWAG00000018658 #35	ENSCWAG00000018704 #36	ENSCWAG00000018734	ENSCWAG00000018754	ENSCWAG00000018776
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718 #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Camelidae	ANCESTRAL SPECIES	2	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000164097 #37	ENSGT00940000154270.a.b.q.b	ENSGT00940000154542.b.a	ENSGT00940000154460.b
Arabian camel	MODERN SPECIES	33	TBXAS1 (ENSCDRG00005003325)	PARP12 (ENSCDRG00005003422)	KDM7A (ENSCDRG00005003493) #7	SLC37A3 (ENSCDRG00005003585) #9	RAB19 (ENSCDRG00005003711) #10	MKRN1 (ENSCDRG00005003742) #11	DENND2A (ENSCDRG00005003834) #12	ADCK2 (ENSCDRG00005004011) #13	NDUFB2 (ENSCDRG00005004074) #14	BRAF (ENSCDRG00005004131) #15	MRPS33 (ENSCDRG00005004320) #17	TMEM178B (ENSCDRG00005004347) #18	AGK (ENSCDRG00005004378) #19	DENND11 (ENSCDRG00005004485) #20	WEE2 (ENSCDRG00005004501) #21	SSBP1 (ENSCDRG00005004546) #22	PRSS37 (ENSCDRG00005004595) #25	ENSCDRG00005005393 #29	TAS2R38 (ENSCDRG00005005420) ##23	MGAM (ENSCDRG00005005484) #30	ENSCDRG00005005559 #31	ENSCDRG00005005603	ENSCDRG00005005685 #32	PRSS58 (ENSCDRG00005005726) #34	ENSCDRG00005005742 #35	TRBV3-1 (ENSCDRG00005005751) #37	ENSCDRG00005005756	ENSCDRG00005005773	ENSCDRG00005005806	ENSCDRG00005005812	ENSCDRG00005005821
Alpaca	MODERN SPECIES	2110														AGK (ENSVPAG00000003677) #19	WEE2 (ENSVPAG00000003678) #21	SSBP1 (ENSVPAG00000003679) #22	TAS2R3 (ENSVPAG00000003682) #23	TAS2R4 (ENSVPAG00000003683) #24	PRSS37 (ENSVPAG00000003685) #25	CLEC5A (ENSVPAG00000003686) #29	ENSVPAG00000003687 #30	TAS2R38 (ENSVPAG00000003688) ##23	ENSVPAG00000003690 #31	ENSVPAG00000003691	ENSVPAG00000003692 #32	PRSS58 (ENSVPAG00000003693) #34	ENSVPAG00000003694	ENSVPAG00000003695 ##36
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718 #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Pecora	ANCESTRAL SPECIES	11	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718 #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Percora_a	ANCESTRAL SPECIES	11	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718.b #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Siberian musk deer	MODERN SPECIES	84	ENSMMSG00000001940	PARP12 (ENSMMSG00000001913)	KDM7A (ENSMMSG00000001870) #7	SLC37A3 (ENSMMSG00000001841) #9	RAB19 (ENSMMSG00000001820) #10	ENSMMSG00000001799 #11	DENND2A (ENSMMSG00000001773) #12	ADCK2 (ENSMMSG00000001742) #13	ENSMMSG00000001727 #14	BRAF (ENSMMSG00000001692) #15	MRPS33 (ENSMMSG00000001665) #17	TMEM178B (ENSMMSG00000001648) #18	AGK (ENSMMSG00000001568) #19	DENND11 (ENSMMSG00000001523) #20	WEE2 (ENSMMSG00000001502) #21	SSBP1 (ENSMMSG00000001484) #22	TAS2R3 (ENSMMSG00000001474) #23	TAS2R4 (ENSMMSG00000001467) #24	PRSS37 (ENSMMSG00000001438) #25	OR9A4 (ENSMMSG00000001426) #26	OR9A1P (ENSMMSG00000001418) #27	CLEC5A (ENSMMSG00000001372) #29	TAS2R38 (ENSMMSG00000001352) ##23	MGAM (ENSMMSG00000001266) #30	ENSMMSG00000001157 #31	ENSMMSG00000001130 #32	PRSS58 (ENSMMSG00000001105) #34	ENSMMSG00000001086 #35	ENSMMSG00000001007 ##36	ENSMMSG00000000986	ENSMMSG00000000967
Bovidae	ANCESTRAL SPECIES	12	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718.b #27	ENSGT00940000164718.a #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34
Bovinae	ANCESTRAL SPECIES	8	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718.b.a.b #27	ENSGT00940000164718.b.a.a #27	ENSGT00940000164718.a #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34
American bison	MODERN SPECIES	3266	TBXAS1 (ENSBBBG00000015965)	PARP12 (ENSBBBG00000003932)	KDM7A (ENSBBBG00000007563) #7	SLC37A3 (ENSBBBG00000015735) #9	RAB19 (ENSBBBG00000003919) #10	ENSBBBG00000015693 #11	DENND2A (ENSBBBG00000015682) #12	ADCK2 (ENSBBBG00000003435) #13	ENSBBBG00000003447 #14	BRAF (ENSBBBG00000015611) #15	MRPS33 (ENSBBBG00000015506) #17	TMEM178B (ENSBBBG00000015500) #18	AGK (ENSBBBG00000015486) #19	DENND11 (ENSBBBG00000015364) #20	WEE2 (ENSBBBG00000015353) #21	SSBP1 (ENSBBBG00000003813) #22	TAS2R3 (ENSBBBG00000015325) #23	TAS2R4 (ENSBBBG00000015322) #24	PRSS37 (ENSBBBG00000001257) #25	OR9A4 (ENSBBBG00000001275) #26	ENSBBBG00000001280 #27	ENSBBBG00000001284 #27	ENSBBBG00000001290 #26	CLEC5A (ENSBBBG00000001296) #29	TAS2R38 (ENSBBBG00000001337) ##23	MGAM (ENSBBBG00000001362) #30	ENSBBBG00000015238 #31	ENSBBBG00000003774	ENSBBBG00000015178 #32	PRSS58 (ENSBBBG00000003537) #34	ENSBBBG00000003758 #35
Bos	ANCESTRAL SPECIES	8	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718.b.a.a #27	ENSGT00940000164718.a #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Bos_a	ANCESTRAL SPECIES	12	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00940000164718.b.a.a #27	ENSGT00910000144330 #29
Domestic yak	MODERN SPECIES	23	SLC37A3 (ENSBGRG00000000779) #9	RAB19 (ENSBGRG00000000744) #10	ENSBGRG00000000642 #11	ENSBGRG00000000626	DENND2A (ENSBGRG00000000595) #12	ADCK2 (ENSBGRG00000000551) #13	ENSBGRG00000000525 #14	BRAF (ENSBGRG00000000301) #15	MRPS33 (ENSBGRG00000000246) #17	ENSBGRG00000000238 #17	ENSBGRG00000017649 #18	ENSBGRG00000017373	AGK (ENSBGRG00000016854) #19	DENND11 (ENSBGRG00000016745) #20	WEE2 (ENSBGRG00000016334) #21	SSBP1 (ENSBGRG00000016274) #22	TAS2R3 (ENSBGRG00000016256) #23	TAS2R4 (ENSBGRG00000016236) #24	PRSS37 (ENSBGRG00000016095) #25	ENSBGRG00000016067	ENSBGRG00000016026 #35	ENSBGRG00000016009 #26	ENSBGRG00000015987 #26	ENSBGRG00000015928 #27	VIPR2 (ENSBGRG00000015840)	DYNC2I1 (ENSBGRG00000015386)	ESYT2 (ENSBGRG00000014549)	NCAPG2 (ENSBGRG00000014257)	ENSBGRG00000014087	DNAJB6 (ENSBGRG00000013883)	UBE3C (ENSBGRG00000013115)
Wild yak	MODERN SPECIES	1240							ENSBMUG00000014555 #14	BRAF (ENSBMUG00000014190) #15	MRPS33 (ENSBMUG00000013693) #17	ENSBMUG00000013648 #18	ENSBMUG00000013637	ENSBMUG00000013632 #18	AGK (ENSBMUG00000013602) #19	DENND11 (ENSBMUG00000013497) #20	WEE2 (ENSBMUG00000013476) #21	SSBP1 (ENSBMUG00000013407) #22	TAS2R3 (ENSBMUG00000013363) #23	PRSS37 (ENSBMUG00000013330) #25	OR9A4 (ENSBMUG00000013310) #26	OR9A1P (ENSBMUG00000013278) #27	CLEC5A (ENSBMUG00000013241) #29
Bos_b	ANCESTRAL SPECIES	7	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718.b.a.b #27	ENSGT00940000164718.b.a.a #27	ENSGT00940000163413 #26	ENSGT00940000164718.b.b #27	ENSGT00940000164718.a #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Cow	MODERN SPECIES	23	PARP12 (ENSBTAG00000016546)	KDM7A (ENSBTAG00000003495) #7	SLC37A3 (ENSBTAG00000012239) #9	RAB19 (ENSBTAG00000012261) #10	MKRN1 (ENSBTAG00000008306) #11	DENND2A (ENSBTAG00000004799) #12	ADCK2 (ENSBTAG00000020484) #13	NDUFB2 (ENSBTAG00000021759) #14	BRAF (ENSBTAG00000021761) #15	MRPS33 (ENSBTAG00000005285) #17	ENSBTAG00000051724 #18	ENSBTAG00000053379 #18	AGK (ENSBTAG00000019265) #19	DENND11 (ENSBTAG00000016879) #20	WEE2 (ENSBTAG00000004658) #21	SSBP1 (ENSBTAG00000010931) #22	TAS2R3 (ENSBTAG00000016880) #23	TAS2R4 (ENSBTAG00000018440) #24	PRSS37 (ENSBTAG00000018442) #25	ENSBTAG00000027341 #35	OR9A4 (ENSBTAG00000054915) #26	OR9A17 (ENSBTAG00000049043) #27	OR9A18 (ENSBTAG00000049592) #27	OR9A7 (ENSBTAG00000048496) #27	CLEC5A (ENSBTAG00000020453) #29	TAS2R38 (ENSBTAG00000024065) ##23	MGAM (ENSBTAG00000046152) #30	MOXD2 (ENSBTAG00000003621) #32	PRSS58 (ENSBTAG00000003628) #34	ENSBTAG00000031236 #35	PRSS1 (ENSBTAG00000052726) ##36
Hybrid Bos Indicus	MODERN SPECIES	23	ENSBIXG00005030894	KDM7A (ENSBIXG00005030888) #7	SLC37A3 (ENSBIXG00005030870) #9	RAB19 (ENSBIXG00005030856) #10	MKRN1 (ENSBIXG00005030841) #11	DENND2A (ENSBIXG00005030818) #12	ADCK2 (ENSBIXG00005030802) #13	ENSBIXG00005030783 #14	BRAF (ENSBIXG00005030730) #15	MRPS33 (ENSBIXG00005030703) #17	TMEM178B (ENSBIXG00005030684) #18	ENSBIXG00005030668	AGK (ENSBIXG00005030624) #19	DENND11 (ENSBIXG00005030578) #20	WEE2 (ENSBIXG00005030568) #21	SSBP1 (ENSBIXG00005030556) #22	TAS2R3 (ENSBIXG00005030551) #23	TAS2R4 (ENSBIXG00005030549) #24	PRSS37 (ENSBIXG00005030543) #25	ENSBIXG00005030540 #35	ENSBIXG00005030529 #27	ENSBIXG00005030524 #27	OR9A4 (ENSBIXG00005030521) #26	CLEC5A (ENSBIXG00005030512) #29	TAS2R38 (ENSBIXG00005030506) ##23	ENSBIXG00005030502 #31	MGAM (ENSBIXG00005008859) #30	ENSBIXG00005009390 #32	PRSS58 (ENSBIXG00005009415) #34	ENSBIXG00005009425 #35	ENSBIXG00005009443 ##36
Caprinae	ANCESTRAL SPECIES	10	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.jb #14	ENSGT00940000156154 #15	ENSGT00390000011401.mb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718.b #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.b.x ##36
Rambouillet Sheep	MODERN SPECIES	20	HIPK2 (ENSOARG00020004569)	TBXAS1 (ENSOARG00020004929)	KDM7A (ENSOARG00020005079) #7	SLC37A3 (ENSOARG00020005137) #9	RAB19 (ENSOARG00020005219) #10	ENSOARG00020005232 #11	DENND2A (ENSOARG00020005286) #12	ADCK2 (ENSOARG00020005352) #13	NDUFB2 (ENSOARG00020005380) #14	BRAF (ENSOARG00020005423) #15	ENSOARG00020005487 #17	TMEM178B (ENSOARG00020005515) #18	AGK (ENSOARG00020005551) #19	DENND11 (ENSOARG00020005703) #20	WEE2 (ENSOARG00020005754) #21	SSBP1 (ENSOARG00020005814) #22	TAS2R3 (ENSOARG00020005838) #23	TAS2R4 (ENSOARG00020005852) #24	PRSS37 (ENSOARG00020005886) #25	ENSOARG00020005924 #35	ENSOARG00020005951	OR9A4 (ENSOARG00020005962) #26	OR9A1P (ENSOARG00020000207) #27	ENSOARG00020000219 #26	CLEC5A (ENSOARG00020000250) #29	TAS2R38 (ENSOARG00020000290) ##23	MGAM (ENSOARG00020000329) #30	MGAM2 (ENSOARG00020000546) #31	ENSOARG00020000674 #32	PRSS58 (ENSOARG00020000699) #34	ENSOARG00020000720 #35
Goat	DUPLICATION
Goat	DUPLICATION
Goat	MODERN SPECIES	23	KDM7A (ENSCHIG00000013546) #7	SLC37A3 (ENSCHIG00000009119) #9	RAB19 (ENSCHIG00000006465) #10	ENSCHIG00000024804 #11	DENND2A (ENSCHIG00000023014) #12	ADCK2 (ENSCHIG00000025299) #13	NDUFB2 (ENSCHIG00000016937) #14	BRAF (ENSCHIG00000018376) #15	ENSCHIG00000011022	ENSCHIG00000023631 #17	ENSCHIG00000012235 #18	ENSCHIG00000024421 #18	AGK (ENSCHIG00000023107) #19	DENND11 (ENSCHIG00000015543) #20	ENSCHIG00000018792 #21	ENSCHIG00000014181 #22	TAS2R3 (ENSCHIG00000010773) #23	TAS2R4 (ENSCHIG00000011112) #24	TAS2R5 (ENSCHIG00000013989) ##23	PRSS37 (ENSCHIG00000000473) #25	OR9A4 (ENSCHIG00000021147) #26	ENSCHIG00000007632 #27	ENSCHIG00000008736 #27	CLEC5A (ENSCHIG00000019120) #29	TAS2R38 (ENSCHIG00000010606) ##23	MGAM (ENSCHIG00000015947) #30	MGAM2 (ENSCHIG00000015889) #31	ENSCHIG00000025988 #32	ENSCHIG00000018979 #33	PRSS58 (ENSCHIG00000010583) #34	ENSCHIG00000020117 #35
Goat	MODERN SPECIES	23									ENSCHIG00000022094	ENSCHIG00000026193	ENSCHIG00000008273	ENSCHIG00000016202	VSTM2A (ENSCHIG00000006883)	ENSCHIG00000012143	ENSCHIG00000021784	ENSCHIG00000013466 #22	ENSCHIG00000023516	ENSCHIG00000026383	ENSCHIG00000013791	COBL (ENSCHIG00000022759)	GRB10 (ENSCHIG00000022163)	DDC (ENSCHIG00000013689)	FIGNL1 (ENSCHIG00000005867)	IKZF1 (ENSCHIG00000018797)	SPATA48 (ENSCHIG00000015201)	ZPBP (ENSCHIG00000008321)	VWC2 (ENSCHIG00000020940)	ENSCHIG00000008014	ABCA13 (ENSCHIG00000020126)	UPP1 (ENSCHIG00000014663)	C7orf57 (ENSCHIG00000013490)
Goat	MODERN SPECIES	10	ENSCHIG00000022085	CACNB1 (ENSCHIG00000021855)	ARL5C (ENSCHIG00000008208)	PLXDC1 (ENSCHIG00000024239)	FBXO47 (ENSCHIG00000013068)	LASP1 (ENSCHIG00000019675)	ENSCHIG00000016076	C17orf98 (ENSCHIG00000010304)	CWC25 (ENSCHIG00000015063)	PIP4K2B (ENSCHIG00000022865)	PSMB3 (ENSCHIG00000012081)	PCGF2 (ENSCHIG00000018902)	ENSCHIG00000002051	MLLT6 (ENSCHIG00000019829)	EPOP (ENSCHIG00000008501)	ENSCHIG00000019374 #22	SRCIN1 (ENSCHIG00000022297)	ARHGAP23 (ENSCHIG00000023996)	SOCS7 (ENSCHIG00000012449)	GPR179 (ENSCHIG00000026098)	MRPL45 (ENSCHIG00000014110)	NPEPPS (ENSCHIG00000022782)	KPNB1 (ENSCHIG00000014896)	TBKBP1 (ENSCHIG00000016860)	TBX21 (ENSCHIG00000021993)	OSBPL7 (ENSCHIG00000023060)	MRPL10 (ENSCHIG00000027033)	LRRC46 (ENSCHIG00000015497)	SCRN2 (ENSCHIG00000026802)	SP6 (ENSCHIG00000009897)	SP2 (ENSCHIG00000018648)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	9	ENSCHYG00000019273	SLC37A3 (ENSCHYG00000019327) #9	RAB19 (ENSCHYG00000019781) #10	ENSCHYG00000019857 #11	DENND2A (ENSCHYG00000020046) #12	ADCK2 (ENSCHYG00000020204) #13	NDUFB2 (ENSCHYG00000020392) #14	BRAF (ENSCHYG00000020466) #15	ENSCHYG00000020681 #17	TMEM178B (ENSCHYG00000020754) #18	ENSCHYG00000020854	AGK (ENSCHYG00000021039) #19	DENND11 (ENSCHYG00000021628) #20	ENSCHYG00000021735	WEE2 (ENSCHYG00000021766) #21	ENSCHYG00000021894 #22	TAS2R3 (ENSCHYG00000021939) #23	TAS2R4 (ENSCHYG00000021959) #24	PRSS37 (ENSCHYG00000021973) #25	ENSCHYG00000022000 #35	OR9A4 (ENSCHYG00000022018) #26	OR9A1P (ENSCHYG00000022032) #27	ENSCHYG00000022053 #26	CLEC5A (ENSCHYG00000022087) #29	TAS2R38 (ENSCHYG00000022288) ##23	MGAM2 (ENSCHYG00000022362) #31	ENSCHYG00000022992 #32	ENSCHYG00000023056 #33	PRSS58 (ENSCHYG00000023073) #34	ENSCHYG00000023095 #35	ENSCHYG00000023122 ##36
Yarkand deer	MODERN SPECIES	18	CCN2 (ENSCHYG00000021889)	ENPP1 (ENSCHYG00000021685)	ENSCHYG00000021655	ENPP3 (ENSCHYG00000021429)	MED23 (ENSCHYG00000020859)	ARG1 (ENSCHYG00000020752)	ENSCHYG00000020691	AKAP7 (ENSCHYG00000020610)	EPB41L2 (ENSCHYG00000018851)	SMLR1 (ENSCHYG00000018712)	TMEM200A (ENSCHYG00000018697)	SAMD3 (ENSCHYG00000018523)	L3MBTL3 (ENSCHYG00000018215)	TMEM244 (ENSCHYG00000018176)	ARHGAP18 (ENSCHYG00000017830)	ENSCHYG00000017769 #22	LAMA2 (ENSCHYG00000016217)	PTPRK (ENSCHYG00000015602)	THEMIS (ENSCHYG00000015464)	ENSCHYG00000015412	CYB5R4 (ENSCHYG00000014714)	MRAP2 (ENSCHYG00000014617)	CEP162 (ENSCHYG00000014176)	TBX18 (ENSCHYG00000013985)	ENSCHYG00000013935	ENSCHYG00000022979
Cetacea	ANCESTRAL SPECIES	13	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.hb #14	ENSGT00940000156154 #15	ENSGT00390000011401.hb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000154270.b	ENSGT00940000154542.b.a	ENSGT00940000154270.a.b.r	ENSGT00940000154460.b
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.hb #14	ENSGT00940000156154 #15	ENSGT00390000011401.hb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000154270.b	ENSGT00940000154542.b.a	ENSGT00940000154270.a.b.r	ENSGT00940000154460.b	ENSGT00940000154542.b.b
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.hb #14	ENSGT00940000156154 #15	ENSGT00390000011401.hb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000154270.b	ENSGT00940000154542.b.a	ENSGT00940000154270.a.b.r	ENSGT00940000154460.b	ENSGT00940000154542.b.b	ENSGT00940000162707
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.hb.b #14	ENSGT00940000156154 #15	ENSGT00390000011401.hb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000154270.b	ENSGT00940000154542.b.a	ENSGT00940000154270.a.b.r	ENSGT00940000154460.b	ENSGT00940000154542.b.b	ENSGT00940000162707
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.hb.b #14	ENSGT00940000156154 #15	ENSGT00390000011401.hb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000154270.b	ENSGT00940000154542.b.a	ENSGT00940000154270.a.b.r	ENSGT00940000154460.b	ENSGT00940000154542.b.b	ENSGT00940000162707	ENSGT00940000163545.a
Narwhal	MODERN SPECIES	306	TBXAS1 (ENSMMNG00015009967)	PARP12 (ENSMMNG00015009981)	KDM7A (ENSMMNG00015009995) #7	ENSMMNG00015010018	RAB19 (ENSMMNG00015010050) #10	MKRN1 (ENSMMNG00015010057) ##11	DENND2A (ENSMMNG00015010068) #12	ADCK2 (ENSMMNG00015010091) #13	ENSMMNG00015010116 #14	BRAF (ENSMMNG00015010154) #15	ENSMMNG00015010197 #17	TMEM178B (ENSMMNG00015010207) #18	AGK (ENSMMNG00015010245) #19	DENND11 (ENSMMNG00015010294) #20	WEE2 (ENSMMNG00015010311) #21	SSBP1 (ENSMMNG00015010343) #22	TAS2R3 (ENSMMNG00015010363) #23	TAS2R4 (ENSMMNG00015010372) #24	PRSS37 (ENSMMNG00015010392) #25	MGAM (ENSMMNG00015010883) #30	ENSMMNG00015011527 #36	ENSMMNG00015011580	ENSMMNG00015011598	ENSMMNG00015011609	ENSMMNG00015011624	ENSMMNG00015011633	ENSMMNG00015011645	ENSMMNG00015011657	ENSMMNG00015011663	ENSMMNG00015011678	ENSMMNG00015011688
Beluga whale	MODERN SPECIES	72	KDM7A (ENSDLEG00000021119) #7	ENSDLEG00000021116	ENSDLEG00000021115	RAB19 (ENSDLEG00000021111) #10	MKRN1 (ENSDLEG00000021109) ##11	DENND2A (ENSDLEG00000021099) #12	ADCK2 (ENSDLEG00000021096) #13	ENSDLEG00000021093 #14	BRAF (ENSDLEG00000021077) #15	MRPS33 (ENSDLEG00000021075) #17	ENSDLEG00000021072 #18	ENSDLEG00000021067 #18	AGK (ENSDLEG00000021057) #19	KIAA1147 (ENSDLEG00000021048) #20	WEE2 (ENSDLEG00000021040) #21	SSBP1 (ENSDLEG00000021032) #22	TAS2R4 (ENSDLEG00000021030) #24	PRSS37 (ENSDLEG00000021026) #25	MGAM (ENSDLEG00000018505) #30	ENSDLEG00000018001 #32	ENSDLEG00000017986 #35	ENSDLEG00000017974 #36	ENSDLEG00000017963	ENSDLEG00000017950	ENSDLEG00000017940	ENSDLEG00000017928	ENSDLEG00000017916	ENSDLEG00000017911	ENSDLEG00000017897	ENSDLEG00000017885	ENSDLEG00000017865
Vaquita	MODERN SPECIES	20	TBXAS1 (ENSPSNG00000017057)	PARP12 (ENSPSNG00000016948)	KDM7A (ENSPSNG00000016893) #7	ENSPSNG00000016803	RAB19 (ENSPSNG00000016717) #10	MKRN1 (ENSPSNG00000016640) ##11	DENND2A (ENSPSNG00000016464) #12	ADCK2 (ENSPSNG00000016397) #13	ENSPSNG00000016266 #14	BRAF (ENSPSNG00000016141) #15	ENSPSNG00000016049 #17	TMEM178B (ENSPSNG00000015985) #18	AGK (ENSPSNG00000015653) #19	DENND11 (ENSPSNG00000015409) #20	WEE2 (ENSPSNG00000015224) #21	SSBP1 (ENSPSNG00000015143) #22	TAS2R4 (ENSPSNG00000014812) #24	TAS2R5 (ENSPSNG00000014749) ##23	PRSS37 (ENSPSNG00000014654) #25	MGAM (ENSPSNG00000013851) #30	ENSPSNG00000013730 #35	ENSPSNG00000013190 #36	ENSPSNG00000013078	ENSPSNG00000013034	ENSPSNG00000012987	ENSPSNG00000012936	ENSPSNG00000012881	ENSPSNG00000012846	ENSPSNG00000012814	ENSPSNG00000012769	ENSPSNG00000012684 ##36
Dolphin	MODERN SPECIES	2768													ENSTTRG00000009948	AGK (ENSTTRG00000009958) #19	WEE2 (ENSTTRG00000009975) #21	SSBP1 (ENSTTRG00000009987) #22	PRSS37 (ENSTTRG00000010006) #25
Sperm whale	MODERN SPECIES	16	ENSPCTG00005002106	KDM7A (ENSPCTG00005002076) #7	SLC37A3 (ENSPCTG00005001973)	RAB19 (ENSPCTG00005001933) #10	MKRN1 (ENSPCTG00005001919) #11	ADCK2 (ENSPCTG00005001907) #13	DENND2A (ENSPCTG00005001895) #12	ENSPCTG00005001882 #14	BRAF (ENSPCTG00005001762) #15	MRPS33 (ENSPCTG00005001712) #17	TMEM178B (ENSPCTG00005001699) #18	AGK (ENSPCTG00005001621) #19	KIAA1147 (ENSPCTG00005001569) #20	WEE2 (ENSPCTG00005001548) #21	ENSPCTG00005001533	SSBP1 (ENSPCTG00005001511) #22	TAS2R4 (ENSPCTG00005001494) #24	PRSS37 (ENSPCTG00005001480) #25	TAS2R38 (ENSPCTG00005001461) ##23	MGAM (ENSPCTG00005001373) #30	ENSPCTG00005001338 #35	ENSPCTG00005001323 #36	ENSPCTG00005001310	ENSPCTG00005001300	ENSPCTG00005001289	ENSPCTG00005001274	ENSPCTG00005001260	ENSPCTG00005001242	ENSPCTG00005001227	ENSPCTG00005001217	ENSPCTG00005001204 ##36
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	11	PIGB (ENSBMSG00010003389)	CCPG1 (ENSBMSG00010003354)	PIERCE2 (ENSBMSG00010003343)	DNAAF4 (ENSBMSG00010003330)	PYGO1 (ENSBMSG00010003306)	ENSBMSG00010003291	PRTG (ENSBMSG00010003236)	ENSBMSG00010003217	NEDD4 (ENSBMSG00010003007)	RFX7 (ENSBMSG00010002951)	ENSBMSG00010002935	TEX9 (ENSBMSG00010002805)	MNS1 (ENSBMSG00010002770)	ENSBMSG00010002765	ENSBMSG00010002756	ENSBMSG00010002738 #22	TCF12 (ENSBMSG00010002642)	CGNL1 (ENSBMSG00010002567)	MYZAP (ENSBMSG00010002466)	ENSBMSG00010002414	ALDH1A2 (ENSBMSG00010002264)	AQP9 (ENSBMSG00010002216)	LIPC (ENSBMSG00010002097)	ADAM10 (ENSBMSG00010002053)	MINDY2 (ENSBMSG00010002021)	SLTM (ENSBMSG00010001996)	RNF111 (ENSBMSG00010001868)	CCNB2 (ENSBMSG00010001737)	MYO1E (ENSBMSG00010001489)	FAM81A (ENSBMSG00010001446)	ENSBMSG00010001413
Blue whale	MODERN SPECIES	20	PARP12 (ENSBMSG00010015492)	KDM7A (ENSBMSG00010015443) #7	SLC37A3 (ENSBMSG00010015373) #9	RAB19 (ENSBMSG00010015336) #10	MKRN1 (ENSBMSG00010015275) #11	ENSBMSG00010015236 #12	ENSBMSG00010015079 #12	ADCK2 (ENSBMSG00010015030) #13	ENSBMSG00010014979 #14	BRAF (ENSBMSG00010014913) #15	ENSBMSG00010014857 #17	TMEM178B (ENSBMSG00010014839) #18	AGK (ENSBMSG00010014634) #19	DENND11 (ENSBMSG00010014559) #20	WEE2 (ENSBMSG00010014473) #21	ENSBMSG00010014422 #22	PRSS37 (ENSBMSG00010014322) #25	MGAM (ENSBMSG00010014030) #30	ENSBMSG00010013939 #32	PRSS58 (ENSBMSG00010013894) #34	ENSBMSG00010013865 #35	ENSBMSG00010013824 #36	ENSBMSG00010017998	ENSBMSG00010017982	ENSBMSG00010017955	ENSBMSG00010017937	ENSBMSG00010017918	ENSBMSG00010017909	ENSBMSG00010017899	ENSBMSG00010017881	ENSBMSG00010017795
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.d #26	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000017491.t.u.k	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000164097 #37
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000017491.t.u.k	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000164097 #37
Tiger	MODERN SPECIES	338												ENSPTIG00000006995 #18	AGK (ENSPTIG00000007059) #19	DENND11 (ENSPTIG00000007425) #20	WEE2 (ENSPTIG00000007441) #21	SSBP1 (ENSPTIG00000007543) #22	TAS2R3 (ENSPTIG00000008623) #23	PRSS37 (ENSPTIG00000007671) #25	OR9A1P (ENSPTIG00000008631) #27	OR9A4 (ENSPTIG00000008641) #26	CLEC5A (ENSPTIG00000007743) #29	TAS2R38 (ENSPTIG00000008646) ##23	MGAM (ENSPTIG00000007791) #30	MGAM2 (ENSPTIG00000007875) #31	ENSPTIG00000007941 #32	ENSPTIG00000007959 #33	PRSS58 (ENSPTIG00000007966) #34	ENSPTIG00000007980 #35	ENSPTIG00000007990 #36	ENSPTIG00000007999	ENSPTIG00000008004
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000017491.t.u.k	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413.d #26	ENSGT00940000164718 #27	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36
lion	MODERN SPECIES	2	PARP12 (ENSPLOG00000006216)	KDM7A (ENSPLOG00000006272) #7	SLC37A3 (ENSPLOG00000006322) #9	MKRN1 (ENSPLOG00000006377) #11	RAB19 (ENSPLOG00000006421) #10	DENND2A (ENSPLOG00000006462) #12	ADCK2 (ENSPLOG00000006564) #13	NDUFB2 (ENSPLOG00000006615) #14	BRAF (ENSPLOG00000006659) #15	ENSPLOG00000006711	MRPS33 (ENSPLOG00000006727) #17	TMEM178B (ENSPLOG00000006748) #18	AGK (ENSPLOG00000006870) #19	DENND11 (ENSPLOG00000007062) #20	WEE2 (ENSPLOG00000007110) #21	SSBP1 (ENSPLOG00000007153) #22	TAS2R3 (ENSPLOG00000007169) #23	TAS2R4 (ENSPLOG00000007183) #24	PRSS37 (ENSPLOG00000007202) #25	ENSPLOG00000007235 #27	ENSPLOG00000007265 #27	OR9A4 (ENSPLOG00000007287) #26	CLEC5A (ENSPLOG00000007322) #29	TAS2R38 (ENSPLOG00000007379) ##23	MGAM (ENSPLOG00000007975) #30	ENSPLOG00000010301 #31	ENSPLOG00000010372 #32	ENSPLOG00000010445 #33	PRSS58 (ENSPLOG00000010461) #34	ENSPLOG00000010506 #35	ENSPLOG00000010541 #36
leopard	MODERN SPECIES	23	PARP12 (ENSPPRG00000024763)	KDM7A (ENSPPRG00000024771) #7	SLC37A3 (ENSPPRG00000024774) #9	RAB19 (ENSPPRG00000024782) #10	MKRN1 (ENSPPRG00000024785) #11	DENND2A (ENSPPRG00000024795) #12	ADCK2 (ENSPPRG00000024802) #13	NDUFB2 (ENSPPRG00000024808) #14	BRAF (ENSPPRG00000024821) #15	ENSPPRG00000024823	MRPS33 (ENSPPRG00000024825) #17	TMEM178B (ENSPPRG00000024828) #18	ENSPPRG00000024832 #19	DENND11 (ENSPPRG00000024839) #20	WEE2 (ENSPPRG00000024844) #21	SSBP1 (ENSPPRG00000024849) #22	TAS2R3 (ENSPPRG00000019421) #23	TAS2R4 (ENSPPRG00000019408) #24	PRSS37 (ENSPPRG00000024857) #25	ENSPPRG00000019397 #26	ENSPPRG00000019380 #26	CLEC5A (ENSPPRG00000024864) #29	MGAM (ENSPPRG00000024877) #30	MGAM2 (ENSPPRG00000024888) #31	ENSPPRG00000024900 #32	ENSPPRG00000019361 #33	PRSS58 (ENSPPRG00000024903) #34	ENSPPRG00000024907 #35	ENSPPRG00000024914 #36	ENSPPRG00000024917	ENSPPRG00000019350
Cat	MODERN SPECIES	1	PARP12 (ENSFCAG00000026388)	KDM7A (ENSFCAG00000030285) #7	SLC37A3 (ENSFCAG00000013041) #9	MKRN1 (ENSFCAG00000024942) #11	RAB19 (ENSFCAG00000043746) #10	DENND2A (ENSFCAG00000012839) #12	ADCK2 (ENSFCAG00000028490) #13	NDUFB2 (ENSFCAG00000036666) #14	BRAF (ENSFCAG00000012847) #15	ENSFCAG00000034313	MRPS33 (ENSFCAG00000029690) #17	TMEM178B (ENSFCAG00000040899) #18	AGK (ENSFCAG00000005448) #19	DENND11 (ENSFCAG00000018973) #20	WEE2 (ENSFCAG00000018517) #21	ENSFCAG00000035640 #22	PRSS37 (ENSFCAG00000006573) #25	OR9A1P (ENSFCAG00000042976) #27	OR9A4 (ENSFCAG00000046309) #26	CLEC5A (ENSFCAG00000008023) #29	TAS2R38 (ENSFCAG00000023407) ##23	MGAM (ENSFCAG00000024379) #30	ENSFCAG00000018949 #36	ENSFCAG00000022750 #31	MOXD2 (ENSFCAG00000051435) #32	ENSFCAG00000028392 #33	PRSS58 (ENSFCAG00000001368) #34	ENSFCAG00000024016 #35	ENSFCAG00000052478	ENSFCAG00000049851	ENSFCAG00000050333
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.d #26	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES																	ENSGT00390000002796.y #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00390000002796.y #22
Dog	MODERN SPECIES	8	CCT7 (ENSCAFG00845017858)	FBXO41 (ENSCAFG00845018174)	PRADC1 (ENSCAFG00845018255)	SMYD5 (ENSCAFG00845018316)	NOTO (ENSCAFG00845018376)	RAB11FIP5 (ENSCAFG00845018418)	SFXN5 (ENSCAFG00845018555)	EMX1 (ENSCAFG00845018828)	SPR (ENSCAFG00845018873)	EXOC6B (ENSCAFG00845018998)	CYP26B1 (ENSCAFG00845019592)	DYSF (ENSCAFG00845019878)	ZNF638 (ENSCAFG00845020789)	PAIP2B (ENSCAFG00845021756)	NAGK (ENSCAFG00845021892)	SSBP1 (ENSCAFG00845022014) #22	PHTF1 (ENSCAFG00845022110)	ENSCAFG00845022567	PTPN22 (ENSCAFG00845022702)	BCL2L15 (ENSCAFG00845023051)	AP4B1 (ENSCAFG00845023163)	DCLRE1B (ENSCAFG00845023268)	HIPK1 (ENSCAFG00845023430)	OLFML3 (ENSCAFG00845023748)	SYT6 (ENSCAFG00845023804)	ENSCAFG00845023874	TRIM33 (ENSCAFG00845024048)	BCAS2 (ENSCAFG00845024283)	DENND2C (ENSCAFG00845024386) ##12	AMPD1 (ENSCAFG00845025118)	NRAS (ENSCAFG00845026380)
Dingo	MODERN SPECIES	389	TBXAS1 (ENSCAFG00020022217)	PARP12 (ENSCAFG00020022200)	KDM7A (ENSCAFG00020022158) #7	SLC37A3 (ENSCAFG00020022145) #9	RAB19 (ENSCAFG00020022144) #10	ENSCAFG00020022139 #11	DENND2A (ENSCAFG00020022101) #12	ADCK2 (ENSCAFG00020022086) #13	NDUFB2 (ENSCAFG00020022084) #14	BRAF (ENSCAFG00020021321) #15	ENSCAFG00020021206 #17	TMEM178B (ENSCAFG00020021193) #18	AGK (ENSCAFG00020021182) #19	DENND11 (ENSCAFG00020021162) #20	WEE2 (ENSCAFG00020021149) #21	SSBP1 (ENSCAFG00020021147) #22	TAS2R3 (ENSCAFG00020021146) #23	TAS2R4 (ENSCAFG00020021144) #24	TAS2R5 (ENSCAFG00020021140) ##23	PRSS37 (ENSCAFG00020021120) #25	OR9A1P (ENSCAFG00020021109) #27	ENSCAFG00020021108 #26	ENSCAFG00020021104 #26	TAS2R38 (ENSCAFG00020021100) ##23	MGAM (ENSCAFG00020021057) #30	ENSCAFG00020021052 #32	ENSCAFG00020021050 #33	PRSS58 (ENSCAFG00020021048) #34	ENSCAFG00020021045 #35	ENSCAFG00020021043 #36	ENSCAFG00020021042
Canidae	ANCESTRAL SPECIES	49	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.bb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.z #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.d #26	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Red fox	MODERN SPECIES	167	PARP12 (ENSVVUG00000001841)	KDM7A (ENSVVUG00000001798) #7	ENSVVUG00000001761	RAB19 (ENSVVUG00000001737) #10	MKRN1 (ENSVVUG00000001720) #11	DENND2A (ENSVVUG00000001629) #12	ADCK2 (ENSVVUG00000001594) #13	NDUFB2 (ENSVVUG00000001582) #14	BRAF (ENSVVUG00000001562) #15	MRPS33 (ENSVVUG00000001526) #17	TMEM178B (ENSVVUG00000001378) #18	AGK (ENSVVUG00000027904) #19	DENND11 (ENSVVUG00000027896) #20	WEE2 (ENSVVUG00000027893) #21	PRSS37 (ENSVVUG00000027887) #25	SSBP1 (ENSVVUG00000027882) #22	CLEC5A (ENSVVUG00000027880) #29	TAS2R38 (ENSVVUG00000027879) ##23	MGAM (ENSVVUG00000027858) #30	MGAM2 (ENSVVUG00000027701) #31	ENSVVUG00000027677 #32	ENSVVUG00000027675 #33	PRSS58 (ENSVVUG00000027673) #34	ENSVVUG00000027672 #35	ENSVVUG00000027670 #36	ENSVVUG00000027667	ENSVVUG00000027666	ENSVVUG00000027664	ENSVVUG00000027663	ENSVVUG00000027660	ENSVVUG00000027659
Canis_lupus	ANCESTRAL SPECIES	42	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.bb #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.z #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.d #26	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Dog	MODERN SPECIES	7	TBXAS1 (ENSCAFG00845031075)	PARP12 (ENSCAFG00845031074)	KDM7A (ENSCAFG00845031073) #7	SLC37A3 (ENSCAFG00845031071) #9	RAB19 (ENSCAFG00845031070) #10	MKRN1 (ENSCAFG00845031068) #11	DENND2A (ENSCAFG00845031062) #12	ADCK2 (ENSCAFG00845031052) #13	NDUFB2 (ENSCAFG00845031044) #14	BRAF (ENSCAFG00845031038) #15	MRPS33 (ENSCAFG00845031033) #17	TMEM178B (ENSCAFG00845031029) #18	AGK (ENSCAFG00845030997) #19	DENND11 (ENSCAFG00845030968) #20	WEE2 (ENSCAFG00845030950) #21	SSBP1 (ENSCAFG00845030936) #22	TAS2R3 (ENSCAFG00845030932) #23	TAS2R4 (ENSCAFG00845030928) #24	TAS2R5 (ENSCAFG00845030924) ##23	PRSS37 (ENSCAFG00845030911) #25	ENSCAFG00845030869 #35	OR9A4C (ENSCAFG00845030848) #26	OR9A4 (ENSCAFG00845030840) #26	ENSCAFG00845030818 #29	TAS2R38 (ENSCAFG00845030800) ##23	MGAM (ENSCAFG00845024416) #30	MGAM2 (ENSCAFG00845020250) #31	MOXD2 (ENSCAFG00845020081) #32	ENSCAFG00845020044 #33	PRSS58 (ENSCAFG00845019999) #34	ENSCAFG00845019855 #35
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT01030000238403	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.d #26	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34
Mustelinae	ANCESTRAL SPECIES	9	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT01030000238403	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT01050000244883.A.a.a.a.b.l.b #36	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000164718 #27	ENSGT00940000163413.d #26	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32
Ferret	MODERN SPECIES	168	PARP12 (ENSMPUG00000003682)	KDM7A (ENSMPUG00000003567) #7	SLC37A3 (ENSMPUG00000003468) #9	RAB19 (ENSMPUG00000003462) #10	MKRN1 (ENSMPUG00000003453) #11	DENND2A (ENSMPUG00000003441) #12	ADCK2 (ENSMPUG00000003434) #13	ENSMPUG00000003423 #14	BRAF (ENSMPUG00000003411) #15	MRPS33 (ENSMPUG00000003408) #17	TMEM178B (ENSMPUG00000003400) #18	ENSMPUG00000003395	AGK (ENSMPUG00000003382) #19	DENND11 (ENSMPUG00000003339) #20	WEE2 (ENSMPUG00000003262) #21	SSBP1 (ENSMPUG00000003257) #22	TAS2R3 (ENSMPUG00000018738) #23	TAS2R5 (ENSMPUG00000018736) ##23	PRSS37 (ENSMPUG00000003229) #25	ENSMPUG00000003225 #35	OR9A1P (ENSMPUG00000018734) #27	ENSMPUG00000018733 #26	ENSMPUG00000018730 #26	CLEC5A (ENSMPUG00000003222) #29	TAS2R38 (ENSMPUG00000018729) ##23	MGAM (ENSMPUG00000003017) #30	ENSMPUG00000003013 #31	ENSMPUG00000003007	ENSMPUG00000003004	ENSMPUG00000002940 #32	PRSS58 (ENSMPUG00000002936) #34
American mink	MODERN SPECIES	3	PARP12 (ENSNVIG00000021615)	KDM7A (ENSNVIG00000021549) #7	SLC37A3 (ENSNVIG00000021517) #9	RAB19 (ENSNVIG00000021506) #10	MKRN1 (ENSNVIG00000021491) #11	DENND2A (ENSNVIG00000021437) #12	ADCK2 (ENSNVIG00000021423) #13	NDUFB2 (ENSNVIG00000021401) #14	BRAF (ENSNVIG00000021330) #15	MRPS33 (ENSNVIG00000021319) #17	ENSNVIG00000021311	TMEM178B (ENSNVIG00000021305) #18	AGK (ENSNVIG00000021096) #19	DENND11 (ENSNVIG00000021077) #20	WEE2 (ENSNVIG00000021053) #21	SSBP (ENSNVIG00000021026) #22	TAS2R3 (ENSNVIG00000021023) #23	TAS2R4 (ENSNVIG00000021019) #24	TAS2R5 (ENSNVIG00000021015) ##23	PRSS37 (ENSNVIG00000021001) #25	OR9A1P (ENSNVIG00000021000) #27	OR9A4 (ENSNVIG00000020980) #26	CLEC5A (ENSNVIG00000020950) #29	TAS2R38 (ENSNVIG00000020941) ##23	MGAM (ENSNVIG00000020823) #30	ENSNVIG00000020796 #31	ENSNVIG00000020758	ENSNVIG00000020745 #32	PRSS58 (ENSNVIG00000020715) #34	ENSNVIG00000020711 #35	ENSNVIG00000020082 #36
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES	12	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT01030000238403	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.`b #22	ENSGT00390000002796.ab #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163595.c.a.b.a	ENSGT00940000154460.a	ENSGT01050000244883.A.a.a.a.b.l.c #36	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000163413.d #26	ENSGT00940000164718 #27	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30
Ursus	ANCESTRAL SPECIES	35	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT01030000238403	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.`b #22	ENSGT00390000002796.ab #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l.c.c #36
American black bear	MODERN SPECIES	6929															WEE2 (ENSUAMG00000014168) #21	SSBP1 (ENSUAMG00000014171) #22
Polar bear	MODERN SPECIES	326						CSMD1 (ENSUMAG00000023133)	MYOM2 (ENSUMAG00000023171)	ARHGEF10 (ENSUMAG00000023234)	CLN8 (ENSUMAG00000023287)	DLGAP2 (ENSUMAG00000023290)	ENSUMAG00000023332	TDRP (ENSUMAG00000023334)	FBXO25 (ENSUMAG00000023338)	ENSUMAG00000023340	ENSUMAG00000023344	ENSUMAG00000023345 #22	ZNF596 (ENSUMAG00000023347)	OR11A1 (ENSUMAG00000023351)	ENSUMAG00000023353	OR12D3 (ENSUMAG00000023356)	OR14J1 (ENSUMAG00000023357)	ENSUMAG00000023358	ENSUMAG00000023359	ENSUMAG00000023360	ENSUMAG00000023361	ENSUMAG00000023362	ENSUMAG00000023364	ENSUMAG00000023365	ENSUMAG00000023366	GPM6A (ENSUMAG00000023367)	WDR17 (ENSUMAG00000023369)
Giant Panda	MODERN SPECIES		TBXAS1 (ENSAMEG00000017877)	PARP12 (ENSAMEG00000017865)	KDM7A (ENSAMEG00000017856) #7	ENSAMEG00000017845	RAB19 (ENSAMEG00000017842) #10	MKRN1 (ENSAMEG00000017832) #11	DENND2A (ENSAMEG00000017824) #12	ADCK2 (ENSAMEG00000017823) #13	NDUFB2 (ENSAMEG00000015328) #14	BRAF (ENSAMEG00000015264) #15	MRPS33 (ENSAMEG00000015259) #17	TMEM178B (ENSAMEG00000029552) #18	ENSAMEG00000015205 #19	DENND11 (ENSAMEG00000015190) #20	WEE2 (ENSAMEG00000015162) #21	SSBP1 (ENSAMEG00000015145) #22	TAS2R3 (ENSAMEG00000019797) #23	TAS2R4 (ENSAMEG00000019793) #24	PRSS37 (ENSAMEG00000015123) #25	ENSAMEG00000015114 #35	OR9A4 (ENSAMEG00000028272) #26	CLEC5A (ENSAMEG00000024594) #29	TAS2R38 (ENSAMEG00000015098) ##23	ENSAMEG00000014965 #30	ENSAMEG00000014963 #31	ENSAMEG00000014918 #32	ENSAMEG00000028202 #33	PRSS58 (ENSAMEG00000014895) #34	ENSAMEG00000014890 #35	ENSAMEG00000006287 #36	TRBV2 (ENSAMEG00000023747)
Ursidae	ANCESTRAL SPECIES	12	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT01030000238403	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.`b #22	ENSGT00390000002796.ab #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163595.c.a.b.a	ENSGT00940000154460.a	ENSGT01050000244883.A.a.a.a.b.l.c #36	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000163413.d #26	ENSGT00940000164718 #27	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31
Ursus	ANCESTRAL SPECIES	35	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT01030000238403	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.`b #22	ENSGT00390000002796.ab #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413.c #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l.c.c #36	ENSGT01050000244883.A.a.a.a.b.l.c.d #36
Polar bear	MODERN SPECIES	205	PARP12 (ENSUMAG00000015082)	KDM7A (ENSUMAG00000015072) #7	ENSUMAG00000015059	RAB19 (ENSUMAG00000015057) #10	MKRN1 (ENSUMAG00000015046) #11	DENND2A (ENSUMAG00000015036) #12	ADCK2 (ENSUMAG00000015028) #13	NDUFB2 (ENSUMAG00000015021) #14	BRAF (ENSUMAG00000015019) #15	MRPS33 (ENSUMAG00000015017) #17	ENSUMAG00000015014	TMEM178B (ENSUMAG00000015005) #18	AGK (ENSUMAG00000014998) #19	DENND11 (ENSUMAG00000014996) #20	WEE2 (ENSUMAG00000014990) #21	ENSUMAG00000014987 #22	TAS2R3 (ENSUMAG00000014985) #23	TAS2R4 (ENSUMAG00000014982) #24	TAS2R5 (ENSUMAG00000014980) ##23	PRSS37 (ENSUMAG00000014967) #25	ENSUMAG00000014960 #35	OR9A1P (ENSUMAG00000014949) #27	OR9A4 (ENSUMAG00000014934) #26	CLEC5A (ENSUMAG00000014912) #29	TAS2R38 (ENSUMAG00000014900) ##23	MGAM (ENSUMAG00000012557) #30	ENSUMAG00000012289 #32	ENSUMAG00000012286 #33	PRSS58 (ENSUMAG00000012282) #34	ENSUMAG00000012275 #35	ENSUMAG00000012263 #36
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36
Chiroptera	ANCESTRAL SPECIES	41	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23
Microchiroptera	ANCESTRAL SPECIES	23	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000164097 #37	ENSGT00940000154270.a.a
Greater horseshoe bat	MODERN SPECIES	18	PARP12 (ENSRFEG00010006269)	KDM7A (ENSRFEG00010006211) #7	ENSRFEG00010006138	RAB19 (ENSRFEG00010006080) #10	ENSRFEG00010006001 #11	DENND2A (ENSRFEG00010021027) #12	ADCK2 (ENSRFEG00010020985) #13	ENSRFEG00010020971	NDUFB2 (ENSRFEG00010020950) #14	BRAF (ENSRFEG00010020876) #15	MRPS33 (ENSRFEG00010020851) #17	TMEM178B (ENSRFEG00010020840) #18	AGK (ENSRFEG00010020764) #19	DENND11 (ENSRFEG00010020723) #20	WEE2 (ENSRFEG00010020683) #21	SSBP1 (ENSRFEG00010020645) #22	TAS2R3 (ENSRFEG00010020628) #23	TAS2R4 (ENSRFEG00010020619) #24	PRSS37 (ENSRFEG00010020580) #25	CLEC5A (ENSRFEG00010020445) #29	TAS2R38 (ENSRFEG00010020417) ##23	MGAM (ENSRFEG00010011361) #30	ENSRFEG00010010486 #31	ENSRFEG00010010272 #32	ENSRFEG00010010246 #33	PRSS58 (ENSRFEG00010010194) #34	ENSRFEG00010010175 #35	ENSRFEG00010010153 #36	TRBV3-1 (ENSRFEG00010010134) #37	TRBV9 (ENSRFEG00010010109)	ENSRFEG00010010095
Microbat	MODERN SPECIES	1078	RAB19 (ENSMLUG00000002031) #10	ENSMLUG00000006053 #11	DENND2A (ENSMLUG00000006056) #12	ENSMLUG00000029101	ADCK2 (ENSMLUG00000007534) #13	NDUFB2 (ENSMLUG00000014604) #14	BRAF (ENSMLUG00000007544) #15	ENSMLUG00000013994 #17	ENSMLUG00000026797 #18	ENSMLUG00000030661	ENSMLUG00000007083	ENSMLUG00000030506 #18	AGK (ENSMLUG00000007092) #19	DENND11 (ENSMLUG00000007121) #20	WEE2 (ENSMLUG00000029750) #21	SSBP1 (ENSMLUG00000007133) #22	TAS2R3 (ENSMLUG00000007928) #23	TAS2R4 (ENSMLUG00000028078) #24	TAS2R5 (ENSMLUG00000006021) ##23	PRSS37 (ENSMLUG00000006019) #25	ENSMLUG00000023258 #35	OR9A1P (ENSMLUG00000027938) #27	CLEC5A (ENSMLUG00000017259) #29	TAS2R38 (ENSMLUG00000013296) ##23	MGAM (ENSMLUG00000017263) #30	ENSMLUG00000008548 #32	ENSMLUG00000029346 #33	PRSS58 (ENSMLUG00000016816) #34	ENSMLUG00000029306 #35	ENSMLUG00000024021 #36	ENSMLUG00000022214
Megabat	MODERN SPECIES	2886													AGK (ENSPVAG00000006217) #19	DENND11 (ENSPVAG00000006219) #20	WEE2 (ENSPVAG00000006220) #21	SSBP1 (ENSPVAG00000006221) #22
Equus	ANCESTRAL SPECIES	13	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00730000111153.oc	ENSGT01050000244883.A.a.a.a.a.d ##36	ENSGT00940000162480.a.d.a	ENSGT00940000163595.c.b.b	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000164097.h.b #37
Donkey	DUPLICATION
Donkey	MODERN SPECIES	7	DPYD (ENSEASG00005015723)	PTBP2 (ENSEASG00005015719)	RWDD3 (ENSEASG00005015716)	TLCD4 (ENSEASG00005026339)	ALG14 (ENSEASG00005034081)	CNN3 (ENSEASG00005032123)	SLC44A3 (ENSEASG00005015701)	F3 (ENSEASG00005015695)	ABCD3 (ENSEASG00005015685)	ARHGAP29 (ENSEASG00005015647)	ABCA4 (ENSEASG00005015609)	GCLM (ENSEASG00005015597)	DNTTIP2 (ENSEASG00005015594)	BCAR3 (ENSEASG00005015591)	FNBP1L (ENSEASG00005015587)	ENSEASG00005015589 #22	DR1 (ENSEASG00005025520)	ENSEASG00005015583	CCDC18 (ENSEASG00005015570)	TMED5 (ENSEASG00005034283)	MTF2 (ENSEASG00005015530)	DIPK1A (ENSEASG00005030243)	ENSEASG00005015515	EVI5 (ENSEASG00005015514)	GFI1 (ENSEASG00005015509)	RPAP2 (ENSEASG00005015507)	GLMN (ENSEASG00005015506)	C1orf146 (ENSEASG00005037463)	ENSEASG00005032361	ENSEASG00005037362	ENSEASG00005015501
Donkey	MODERN SPECIES		PARP12 (ENSEASG00005009926)	KDM7A (ENSEASG00005009924) #7	SLC37A3 (ENSEASG00005009922) #9	RAB19 (ENSEASG00005009919) #10	MKRN1 (ENSEASG00005009917) ##11	DENND2A (ENSEASG00005009911) #12	ADCK2 (ENSEASG00005009907) #13	NDUFB2 (ENSEASG00005009906) #14	BRAF (ENSEASG00005009899) #15	MRPS33 (ENSEASG00005009896) #17	TMEM178B (ENSEASG00005009886) #18	ENSEASG00005009882	AGK (ENSEASG00005009879) #19	DENND11 (ENSEASG00005009876) #20	WEE2 (ENSEASG00005009874) #21	ENSEASG00005009871 #22	PRSS37 (ENSEASG00005009865) #25	OR9A1P (ENSEASG00005032409) #27	OR9A4 (ENSEASG00005033752) #26	CLEC5A (ENSEASG00005009851) #29	ENSEASG00005009837 #30	MGAM2 (ENSEASG00005030719) #31	ENSEASG00005009818 #32	ENSEASG00005030688	PRSS58 (ENSEASG00005009810) #34	ENSEASG00005009806 #35	ENSEASG00005035145 ##36	ENSEASG00005036533 ##36	ENSEASG00005009470 #36	ENSEASG00005031156 #37	ENSEASG00005036725
Eulipotyphla	ANCESTRAL SPECIES	190																ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25
Hedgehog	MODERN SPECIES	947																SSBP1 (ENSEEUG00000010837) #22	TAS2R3 (ENSEEUG00000010873) #23	ENSEEUG00000010884 #24
Common shrew	MODERN SPECIES	552																SSBP1 (ENSSARG00000011495) #22
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a ##36
Glires	ANCESTRAL SPECIES	18	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a ##36	ENSGT00940000162509.l
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163043	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163043	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.b.b ##36	ENSGT00940000162480.a
Marmotini	ANCESTRAL SPECIES	32	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.y.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.b.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.b.a.a.c.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.b.a.a.c.a ##36
Alpin marmot	MODERN SPECIES	35	PARP12 (ENSMMMG00000011607)	KDM7A (ENSMMMG00000011574) #7	ENSMMMG00000011544	MKRN1 (ENSMMMG00000011534) ##11	DENND2A (ENSMMMG00000011518) #12	ADCK2 (ENSMMMG00000011466) #13	NDUFB2 (ENSMMMG00000011455) #14	BRAF (ENSMMMG00000011443) #15	ENSMMMG00000011427 #17	ENSMMMG00000011416	ENSMMMG00000011406 #17	TMEM178B (ENSMMMG00000011372) #18	AGK (ENSMMMG00000011318) #19	DENND11 (ENSMMMG00000011283) #20	WEE2 (ENSMMMG00000011258) #21	SSBP1 (ENSMMMG00000011224) #22	ENSMMMG00000011214 #23	TAS2R4 (ENSMMMG00000011210) #24	ENSMMMG00000011201 #23	PRSS37 (ENSMMMG00000011182) #25	OR9A1P (ENSMMMG00000011173) #27	OR9A4 (ENSMMMG00000011167) #26	CLEC5A (ENSMMMG00000011125) #29	MGAM (ENSMMMG00000010862) #30	MGAM2 (ENSMMMG00000009935) #31	ENSMMMG00000009899 #32	PRSS58 (ENSMMMG00000009890) #34	ENSMMMG00000009883 #35	ENSMMMG00000009748 ##36	ENSMMMG00000008868 ##36	ENSMMMG00000008499 ##36
Marmotini_b	ANCESTRAL SPECIES	117	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139.i	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.y.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30
Squirrel	MODERN SPECIES	192	CLEC2L (ENSSTOG00000021797)	HIPK2 (ENSSTOG00000005957)	TBXAS1 (ENSSTOG00000004552)	PARP12 (ENSSTOG00000004578)	KDM7A (ENSSTOG00000012789) #7	ENSSTOG00000010929	ENSSTOG00000031161 #11	DENND2A (ENSSTOG00000002912) #12	ADCK2 (ENSSTOG00000002559) #13	NDUFB2 (ENSSTOG00000002566) #14	BRAF (ENSSTOG00000002569) #15	ENSSTOG00000001019 #17	TMEM178B (ENSSTOG00000023428) #18	AGK (ENSSTOG00000020008) #19	DENND11 (ENSSTOG00000006980) #20	SSBP1 (ENSSTOG00000007007) #22	PRSS37 (ENSSTOG00000014505) #25	OR9A4 (ENSSTOG00000028119) #26	CLEC5A (ENSSTOG00000015960) #29	ENSSTOG00000003319 #30
Arctic ground squirrel	MODERN SPECIES	318	PARP12 (ENSUPAG00010015611)	KDM7A (ENSUPAG00010015626) #7	ENSUPAG00010015737	RAB19 (ENSUPAG00010015754) #10	MKRN1 (ENSUPAG00010015763) ##11	DENND2A (ENSUPAG00010015818) #12	ADCK2 (ENSUPAG00010015851) #13	NDUFB2 (ENSUPAG00010015866) #14	BRAF (ENSUPAG00010015886) #15	ENSUPAG00010015929	MRPS33 (ENSUPAG00010015943) #17	TMEM178B (ENSUPAG00010015946) #18	AGK (ENSUPAG00010015967) #19	DENND11 (ENSUPAG00010015983) #20	WEE2 (ENSUPAG00010015989) #21	SSBP1 (ENSUPAG00010016004) #22	ENSUPAG00010016035 #23	TAS2R4 (ENSUPAG00010016043) #24	ENSUPAG00010016047 #23	PRSS37 (ENSUPAG00010016052) #25	OR9A1P (ENSUPAG00010016064) #27	OR9A4 (ENSUPAG00010016069) #26	CLEC5A (ENSUPAG00010016074) #29	MGAM (ENSUPAG00010016104) #30
Eurasian red squirrel	MODERN SPECIES	17	KDM7A (ENSSVLG00005012470) #7	ENSSVLG00005012379	RAB19 (ENSSVLG00005012313) #10	ENSSVLG00005012241 #11	ENSSVLG00005012011 ##11	DENND2A (ENSSVLG00005011668) #12	ADCK2 (ENSSVLG00005011400) #13	NDUFB2 (ENSSVLG00005011276) #14	BRAF (ENSSVLG00005011137) #15	ENSSVLG00005011057	MRPS33 (ENSSVLG00005011000) #17	TMEM178B (ENSSVLG00005010943) #18	AGK (ENSSVLG00005010726) #19	DENND11 (ENSSVLG00005010569) #20	ENSSVLG00005010476 #21	SSBP1 (ENSSVLG00005010423) #22	ENSSVLG00005010410 #23	ENSSVLG00005010344 #23	PRSS37 (ENSSVLG00005010291) #25	OR9A1P (ENSSVLG00005010283) #27	OR9A4 (ENSSVLG00005010273) #26	CLEC5A (ENSSVLG00005010134) #29	TAS2R38 (ENSSVLG00005010093) ##23	MGAM (ENSSVLG00005009048) #30	ENSSVLG00005008783 #31	ENSSVLG00005008706 #32	PRSS58 (ENSSVLG00005017027) #34	ENSSVLG00005016942 #35	ENSSVLG00005016228 ##36	ENSSVLG00005016073 ##36	ENSSVLG00005015340 ##36
Hystricomorpha	ANCESTRAL SPECIES	35	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163043	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000163545.a
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000005137	PLCB1 (ENSHGLG00000017610)	ENSHGLG00000044330	PLCB4 (ENSHGLG00000018217)	LAMP5 (ENSHGLG00000036148)	ENSHGLG00000032981	PAK5 (ENSHGLG00000016050)	ENSHGLG00000046856	ANKEF1 (ENSHGLG00000017245)	ENSHGLG00000016926	ENSHGLG00000033517	ISM1 (ENSHGLG00000043849)	TASP1 (ENSHGLG00000016276)	ESF1 (ENSHGLG00000011505)	NDUFAF5 (ENSHGLG00000012482)	ENSHGLG00000021400 #22	ENSHGLG00000017747	ENSHGLG00000037190	FLRT3 (ENSHGLG00000016173)	ENSHGLG00000032467	ENSHGLG00000017926	ENSHGLG00000016849	SNRPB2 (ENSHGLG00000006969)	OTOR (ENSHGLG00000008576)	ENSHGLG00000005046	ENSHGLG00000020281	ENSHGLG00000018289	BANF2 (ENSHGLG00000015254)	SNX5 (ENSHGLG00000017606)	OVOL2 (ENSHGLG00000045118)	PET117 (ENSHGLG00000016254)
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000009494	RAB19 (ENSHGLG00000010948) #10	ENSHGLG00000044578 #11	ENSHGLG00000040747	ENSHGLG00000043500	DENND2A (ENSHGLG00000014310) #12	ADCK2 (ENSHGLG00000037504) #13	ENSHGLG00000017933 #14	BRAF (ENSHGLG00000014168) #15	ENSHGLG00000049810	ENSHGLG00000040990 #17	TMEM178B (ENSHGLG00000043245) #18	AGK (ENSHGLG00000046237) #19	DENND11 (ENSHGLG00000010322) #20	ENSHGLG00000011701 #21	ENSHGLG00000009362 #22	TAS2R4 (ENSHGLG00000039087) #24	PRSS37 (ENSHGLG00000006169) #25	CLEC5A (ENSHGLG00000041574) #29	TAS2R38 (ENSHGLG00000008887) ##23	MGAM (ENSHGLG00000009763) #30	ENSHGLG00000036048 #30	ENSHGLG00000012020 #31	ENSHGLG00000004421 #32	ENSHGLG00000006188	SEMA4D (ENSHGLG00000007257)	ENSHGLG00000008542	ENSHGLG00000014380	CKS2 (ENSHGLG00000008721)	SHC3 (ENSHGLG00000009124)	ENSHGLG00000032550
Hystricomorpha_a	ANCESTRAL SPECIES	40	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT00940000163545.a	ENSGT00940000162480.b
Guinea pig	MODERN SPECIES	10	TBXAS1 (ENSCPOG00000000064)	PARP12 (ENSCPOG00000011210)	KDM7A (ENSCPOG00000011219) #7	ENSCPOG00000003740	RAB19 (ENSCPOG00000031937) #10	MKRN1 (ENSCPOG00000000948) #11	DENND2A (ENSCPOG00000030550) #12	ADCK2 (ENSCPOG00000031703) #13	NDUFB2 (ENSCPOG00000025368) #14	BRAF (ENSCPOG00000021487) #15	MRPS33 (ENSCPOG00000038792) #17	ENSCPOG00000020150 #18	AGK (ENSCPOG00000015447) #19	DENND11 (ENSCPOG00000015452) #20	ENSCPOG00000025291 #21	SSBP1 (ENSCPOG00000040289) #22	TAS2R3 (ENSCPOG00000007635) #23	TAS2R4 (ENSCPOG00000026813) #24	PRSS37 (ENSCPOG00000004461) #25	CLEC5A (ENSCPOG00000039585) #29	MGAM (ENSCPOG00000011280) #30	ENSCPOG00000039963	MGAM2 (ENSCPOG00000009935) #31	PRSS58 (ENSCPOG00000006756) #34	ENSCPOG00000021713 #35	ENSCPOG00000026673 #36	ENSCPOG00000010598	ENSCPOG00000025586	ENSCPOG00000032580	ENSCPOG00000038762	ENSCPOG00000038847
Hystricomorpha_b	ANCESTRAL SPECIES	40	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000161483 #25	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.b.x.m ##36	ENSGT00940000156687.g	ENSGT00940000160399.d	ENSGT00940000161809
Degu	DUPLICATION
Degu	MODERN SPECIES	84	FAM107A (ENSODEG00000009417)	ACOX2 (ENSODEG00000009665)	KCTD6 (ENSODEG00000009456)	PDHB (ENSODEG00000011071)	PXK (ENSODEG00000009061)	ENSODEG00000010715	ABHD6 (ENSODEG00000008297)	ENSODEG00000010685	METTL6 (ENSODEG00000008650)	EAF1 (ENSODEG00000008752)	COLQ (ENSODEG00000009333)	HACL1 (ENSODEG00000007866)	ENSODEG00000019451	SH3BP5 (ENSODEG00000013984)	CAPN7 (ENSODEG00000009154)	ENSODEG00000008798 #22	DNAH1 (ENSODEG00000008443)	BAP1 (ENSODEG00000008927)	PHF7 (ENSODEG00000008416)	SEMA3G (ENSODEG00000010653)	ENSODEG00000010480	NISCH (ENSODEG00000007768)	ENSODEG00000007867	ENSODEG00000008276	NT5DC2 (ENSODEG00000008156)	UQCC5 (ENSODEG00000007436)	ENSODEG00000019639	ENSODEG00000009139	PBRM1 (ENSODEG00000008265)	GNL3 (ENSODEG00000009492)	ENSODEG00000007760
Degu	MODERN SPECIES	68	ENSODEG00000014445	ENSODEG00000014675	RAB19 (ENSODEG00000013764) #10	ENSODEG00000013658 #11	ENSODEG00000013390 #12	ENSODEG00000014071 #13	NDUFB2 (ENSODEG00000013607) #14	BRAF (ENSODEG00000013401) #15	ENSODEG00000012846	ENSODEG00000014878	ENSODEG00000013320	ENSODEG00000013547 #18	AGK (ENSODEG00000015489) #19	DENND11 (ENSODEG00000013048) #20	ENSODEG00000013142 #21	ENSODEG00000013367 #22	PRSS37 (ENSODEG00000013473) #25	CLEC5A (ENSODEG00000013699) #29	ENSODEG00000014828 #30	ENSODEG00000013408	ENSODEG00000012690 #32	PRSS58 (ENSODEG00000013832) #34	ENSODEG00000013684 #35	ENSODEG00000012923 ##36	ENSODEG00000012554 ##36	ENSODEG00000013222 ##36	ENSODEG00000014167	ENSODEG00000012766 ##36	TRPV6 (ENSODEG00000015340)	EPHB6 (ENSODEG00000012570)	TRPV5 (ENSODEG00000014153)
Long-tailed chinchilla	MODERN SPECIES	201	SLC37A3 (ENSCLAG00000001923) #9	MKRN1 (ENSCLAG00000001783) #11	ENSCLAG00000001763	DENND2A (ENSCLAG00000001519) #12	ADCK2 (ENSCLAG00000001471) #13	NDUFB2 (ENSCLAG00000001447) #14	ENSCLAG00000001414	ENSCLAG00000001297 #15	ENSCLAG00000001167	MRPS33 (ENSCLAG00000001134) #17	ENSCLAG00000001114 #18	AGK (ENSCLAG00000001071) #19	DENND11 (ENSCLAG00000001043) #20	ENSCLAG00000001751	WEE2 (ENSCLAG00000009356) #21	SSBP1 (ENSCLAG00000009247) #22	PRSS37 (ENSCLAG00000008886) #25	CLEC5A (ENSCLAG00000008820) #29	TAS2R38 (ENSCLAG00000008669) ##23	ENSCLAG00000007384 #30	ENSCLAG00000003350	ENSCLAG00000003095 #32	ENSCLAG00000003077 #33	PRSS58 (ENSCLAG00000002996) #34	ENSCLAG00000001949 #35	ENSCLAG00000001291 ##36	ENSCLAG00000001271 #36	ENSCLAG00000001180	ENSCLAG00000001157	ENSCLAG00000001113 ##36	TRPV6 (ENSCLAG00000001066)
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36
Murinae	ANCESTRAL SPECIES	4	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36
Mus	ANCESTRAL SPECIES	20	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.s #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36
Ryukyu mouse	MODERN SPECIES	15	Parp12 (MGP_CAROLIEiJ_G0028242)	MGP_CAROLIEiJ_G0028243 #7	MGP_CAROLIEiJ_G0028244	Rab19 (MGP_CAROLIEiJ_G0028245) #10	Mkrn1 (MGP_CAROLIEiJ_G0028246) ##11	Dennd2a (MGP_CAROLIEiJ_G0028247) #12	Adck2 (MGP_CAROLIEiJ_G0028248) #13	MGP_CAROLIEiJ_G0028249 #13	Ndufb2 (MGP_CAROLIEiJ_G0028250) #14	Braf (MGP_CAROLIEiJ_G0028251) #15	Mrps33 (MGP_CAROLIEiJ_G0028252) #17	MGP_CAROLIEiJ_G0028253 #18	Agk (MGP_CAROLIEiJ_G0028254) #19	Dennd11 (MGP_CAROLIEiJ_G0028255) #20	Wee2 (MGP_CAROLIEiJ_G0028256) #21	Ssbp1 (MGP_CAROLIEiJ_G0028257) #22	MGP_CAROLIEiJ_G0028258	Tas2r108 (MGP_CAROLIEiJ_G0028259) #24	Prss37 (MGP_CAROLIEiJ_G0028260) #25	Or9a7 (MGP_CAROLIEiJ_G0028261) #27	Or9a4 (MGP_CAROLIEiJ_G0028262) #26	Clec5a (MGP_CAROLIEiJ_G0028263) #29	Tas2r138 (MGP_CAROLIEiJ_G0028264) ##23	MGP_CAROLIEiJ_G0028265 #30	Moxd2 (MGP_CAROLIEiJ_G0028266) #32	Trbv1 (MGP_CAROLIEiJ_G0002243) #33	Prss58 (MGP_CAROLIEiJ_G0028267) #34	Prss59 (MGP_CAROLIEiJ_G0028268) #35	MGP_CAROLIEiJ_G0028269 ##36	MGP_CAROLIEiJ_G0028270 ##36	MGP_CAROLIEiJ_G0028271 ##36
Mus_B	ANCESTRAL SPECIES	20	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.s #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36
Mus_C	ANCESTRAL SPECIES	19	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.s #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36	ENSGT01050000244883.A.a.a.a.b.k.b ##36
spretus	MODERN SPECIES	15	Parp12 (MGP_SPRETEiJ_G0029241)	Kdm7a (MGP_SPRETEiJ_G0029242) #7	Slc37a3 (MGP_SPRETEiJ_G0029243)	Rab19 (MGP_SPRETEiJ_G0029244) #10	Mkrn1 (MGP_SPRETEiJ_G0029245) ##11	Dennd2a (MGP_SPRETEiJ_G0029246) #12	Adck2 (MGP_SPRETEiJ_G0029247) #13	MGP_SPRETEiJ_G0029248 #13	Ndufb2 (MGP_SPRETEiJ_G0029249) #14	Braf (MGP_SPRETEiJ_G0029250) #15	Mrps33 (MGP_SPRETEiJ_G0029251) #17	MGP_SPRETEiJ_G0029252 #18	Agk (MGP_SPRETEiJ_G0029253) #19	Dennd11 (MGP_SPRETEiJ_G0029254) #20	Wee2 (MGP_SPRETEiJ_G0029255) #21	Ssbp1 (MGP_SPRETEiJ_G0029256) #22	MGP_SPRETEiJ_G0029257	Tas2r108 (MGP_SPRETEiJ_G0029258) #24	Prss37 (MGP_SPRETEiJ_G0029259) #25	MGP_SPRETEiJ_G0029260	Or9a4 (MGP_SPRETEiJ_G0029261) #26	Clec5a (MGP_SPRETEiJ_G0029262) #29	Tas2r138 (MGP_SPRETEiJ_G0029263) ##23	MGP_SPRETEiJ_G0029264 #30	Moxd2 (MGP_SPRETEiJ_G0029265) #32	Trbv1 (MGP_SPRETEiJ_G0002397) #33	Prss58 (MGP_SPRETEiJ_G0029266) #34	Prss59 (MGP_SPRETEiJ_G0029267) #35	MGP_SPRETEiJ_G0029268 ##36	MGP_SPRETEiJ_G0029269 ##36	MGP_SPRETEiJ_G0029270 ##36
Steppe mouse	MODERN SPECIES	3159	Parp12 (ENSMSIG00000003821)	Kdm7a (ENSMSIG00000003734) #7	Slc37a3 (ENSMSIG00000003657)	Rab19 (ENSMSIG00000003633) #10	Mkrn1 (ENSMSIG00000003580) ##11	ENSMSIG00000003618	Dennd2a (ENSMSIG00000003496) #12	Adck2 (ENSMSIG00000003366) #13	Ndufb2 (ENSMSIG00000003342) #14	Braf (ENSMSIG00000003138) #15	ENSMSIG00000003115 #17	ENSMSIG00000003101 #18	Agk (ENSMSIG00000003072) #19	Dennd11 (ENSMSIG00000003036) #20	Wee2 (ENSMSIG00000002990) #21	Ssbp1 (ENSMSIG00000002905) #22	Tas2r137 (ENSMSIG00000002897) #23	Tas2r108 (ENSMSIG00000002885) #24	Prss37 (ENSMSIG00000002853) #25	Or9a7 (ENSMSIG00000002837) #27	Clec5a (ENSMSIG00000002705) #29	Tas2r138 (ENSMSIG00000002690) ##23	ENSMSIG00000002337 #30	ENSMSIG00000001963 #31	Moxd2 (ENSMSIG00000001914) #32	Trbv1 (ENSMSIG00000001891) #33	Prss59 (ENSMSIG00000001848) #35	ENSMSIG00000001830 ##36
Mouse	MODERN SPECIES	15	Tbxas1 (ENSMUSG00000029925)	Parp12 (ENSMUSG00000038507)	Kdm7a (ENSMUSG00000042599) #7	Slc37a3 (ENSMUSG00000029924)	Rab19 (ENSMUSG00000029923) #10	Mkrn1 (ENSMUSG00000029922) ##11	Dennd2a (ENSMUSG00000038456) #12	Adck2 (ENSMUSG00000046947) #13	Ndufb2 (ENSMUSG00000002416) #14	Braf (ENSMUSG00000002413) #15	Mrps33 (ENSMUSG00000029918) #17	Tmem178b (ENSMUSG00000057716) #18	Agk (ENSMUSG00000029916) #19	Dennd11 (ENSMUSG00000037172) #20	Wee2 (ENSMUSG00000037159) #21	Ssbp1 (ENSMUSG00000029911) #22	Tas2r137 (ENSMUSG00000052850) #23	Tas2r108 (ENSMUSG00000037140) #24	Prss37 (ENSMUSG00000029909) #25	Or9a7 (ENSMUSG00000068259) #27	Or9a4 (ENSMUSG00000045514) #26	Clec5a (ENSMUSG00000029915) #29	Tas2r138 (ENSMUSG00000058250) ##23	Mgam (ENSMUSG00000068587) #30	Mgam2-ps (ENSMUSG00000102802) #31	Moxd2 (ENSMUSG00000029885) #32	Trbv1 (ENSMUSG00000076461) #33	Prss58 (ENSMUSG00000051936) #34	Prss59 (ENSMUSG00000029883) #35	1810009J06Rik (ENSMUSG00000094808) ##36	Gm2663 (ENSMUSG00000096525) ##36
Shrew mouse	MODERN SPECIES	11	Parp12 (MGP_PahariEiJ_G0022000)	Kdm7a (MGP_PahariEiJ_G0022001) #7	MGP_PahariEiJ_G0022002	Rab19 (MGP_PahariEiJ_G0022003) #10	Mkrn1 (MGP_PahariEiJ_G0022004) ##11	Dennd2a (MGP_PahariEiJ_G0022005) #12	Adck2 (MGP_PahariEiJ_G0022006) #13	MGP_PahariEiJ_G0022007 #13	Ndufb2 (MGP_PahariEiJ_G0022008) #14	Braf (MGP_PahariEiJ_G0022009) #15	Mrps33 (MGP_PahariEiJ_G0022010) #17	MGP_PahariEiJ_G0022011 #18	Agk (MGP_PahariEiJ_G0022012) #19	Dennd11 (MGP_PahariEiJ_G0022013) #20	Wee2 (MGP_PahariEiJ_G0022014) #21	Ssbp1 (MGP_PahariEiJ_G0022015) #22	MGP_PahariEiJ_G0022016	Tas2r108 (MGP_PahariEiJ_G0022017) #24	Prss37 (MGP_PahariEiJ_G0022018) #25	Or9a4 (MGP_PahariEiJ_G0022019) #26	Clec5a (MGP_PahariEiJ_G0022020) #29	Tas2r138 (MGP_PahariEiJ_G0022021) ##23	MGP_PahariEiJ_G0022022 #30	Moxd2 (MGP_PahariEiJ_G0022023) #32	Trbv1 (MGP_PahariEiJ_G0002045) #33	Prss58 (MGP_PahariEiJ_G0022024) #34	Prss59 (MGP_PahariEiJ_G0022025) #35	MGP_PahariEiJ_G0022026 ##36	MGP_PahariEiJ_G0022027 ##36	MGP_PahariEiJ_G0022028 ##36	Prss3b (MGP_PahariEiJ_G0022029) ##36
Rat	MODERN SPECIES	14	Tbxas1 (ENSRNOG00000007918)	Parp12 (ENSRNOG00000008196)	Kdm7a (ENSRNOG00000052445) #7	Chmp4bl1 (ENSRNOG00000034071)	Slc37a3 (ENSRNOG00000008725)	Rab19 (ENSRNOG00000009030) #10	Mkrn1 (ENSRNOG00000009280) ##11	Dennd2a (ENSRNOG00000026748) #12	Ndufb2 (ENSRNOG00000010005) #13	Braf (ENSRNOG00000010957) #15	Mrps33 (ENSRNOG00000026528) #17	Tmem178b (ENSRNOG00000047635) #18	Agk (ENSRNOG00000011509) #19	Dennd11 (ENSRNOG00000011854) #20	Wee2 (ENSRNOG00000026446) #21	Ssbp1 (ENSRNOG00000012100) #22	Tas2r137 (ENSRNOG00000030413) #23	Tas2r108 (ENSRNOG00000012195) #24	Prss37 (ENSRNOG00000012201) #25	Or9a4 (ENSRNOG00000066955) #26	Clec5a (ENSRNOG00000026306) #29	Tas2r138 (ENSRNOG00000026225) ##23	Mgam (ENSRNOG00000026177) #30	Mgam2 (ENSRNOG00000066165) #31	Moxd2 (ENSRNOG00000012916) #32	Trbv1 (ENSRNOG00000048468) #33	Prss58 (ENSRNOG00000013132) #34	Prss59 (ENSRNOG00000028989) #35	LOC312273 (ENSRNOG00000013203) ##36	LOC286960 (ENSRNOG00000013245) ##36	Prss3b (ENSRNOG00000013382) ##36
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.w #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36	ENSGT01050000244883.A.a.a.a.b.k.a.a ##36	ENSGT00940000162509.l
Cricetinae	ANCESTRAL SPECIES	23	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.b ##11	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.w #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.a ##36	ENSGT01050000244883.A.a.a.a.a.c.a.a.b.b.a ##36	ENSGT01050000244883.A.a.a.a.a.c.a.a.b.b.b.f ##36
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	160	Fig4 (ENSCGRG00001015893)	Gpr6 (ENSCGRG00001015004)	Wasf1 (ENSCGRG00001013706)	Cdc40 (ENSCGRG00001012490)	Mettl24 (ENSCGRG00001012045)	Ddo (ENSCGRG00001010313)	Slc22a16 (ENSCGRG00001010111)	ENSCGRG00001008723	ENSCGRG00001006339	Cdk19 (ENSCGRG00001013081)	ENSCGRG00001010501	Gtf3c6 (ENSCGRG00001010188)	ENSCGRG00001007331	ENSCGRG00001014458	Slc16a10 (ENSCGRG00001004043)	ENSCGRG00001001576 #22	ENSCGRG00001000675	Mfsd4b5 (ENSCGRG00001023659)	ENSCGRG00001021041	ENSCGRG00001019786	Mfsd4b4 (ENSCGRG00001018700)	Rev3l (ENSCGRG00001006588)	Traf3ip2 (ENSCGRG00001022894)	Fyn (ENSCGRG00001013292)	ENSCGRG00001012299	ENSCGRG00001014335	Ccn6 (ENSCGRG00001011722)	Tube1 (ENSCGRG00001012631)	Fam229b (ENSCGRG00001012149)	Lama4 (ENSCGRG00001023009)	Marcks (ENSCGRG00001020371)
Chinese hamster chok1gshd	MODERN SPECIES	153	Fbn2 (ENSCGRG00001020407)	ENSCGRG00001024319	Slc12a2 (ENSCGRG00001019992)	Ccdc192 (ENSCGRG00001017920)	Ctxn3 (ENSCGRG00001003792)	Prrc1 (ENSCGRG00001021725)	Megf10 (ENSCGRG00001016594)	C330018D20Rik (ENSCGRG00001000564)	Marchf3 (ENSCGRG00001018443)	Lmnb1 (ENSCGRG00001023736)	Tex43 (ENSCGRG00001000467)	Phax (ENSCGRG00001022020)	ENSCGRG00001012154	ENSCGRG00001011295	Gramd3 (ENSCGRG00001014891)	ENSCGRG00001013902 #22	Zfp608 (ENSCGRG00001015219)	Csnk1g3 (ENSCGRG00001024465)	Cep120 (ENSCGRG00001017499)	Prdm6 (ENSCGRG00001016821)	Ppic (ENSCGRG00001008818)	Snx24 (ENSCGRG00001011694)	ENSCGRG00001023240	Sncaip (ENSCGRG00001013058)	Gykl1 (ENSCGRG00001001492)	1700034E13Rik (ENSCGRG00001001918)	Zfp474 (ENSCGRG00001002746)	Lox (ENSCGRG00001014607)	Srfbp1 (ENSCGRG00001000718)	Ftmt (ENSCGRG00001006087)	ENSCGRG00001012009
Chinese hamster chok1gshd	MODERN SPECIES	54	Kdm7a (ENSCGRG00001009052) #7	Slc37a3 (ENSCGRG00001009575)	Rab19 (ENSCGRG00001003148) #10	ENSCGRG00001013880	Mkrn1 (ENSCGRG00001016621) ##11	Dennd2a (ENSCGRG00001013315) #12	Adck2 (ENSCGRG00001016753) #13	Ndufb2 (ENSCGRG00001008411) #14	Braf (ENSCGRG00001021906) #15	ENSCGRG00001023061	Mrps33 (ENSCGRG00001000348) #17	ENSCGRG00001012889 #18	Agk (ENSCGRG00001013723) #19	Dennd11 (ENSCGRG00001015156) #20	Wee2 (ENSCGRG00001006258) #21	ENSCGRG00001015635 #22	Tas2r137 (ENSCGRG00001009992) #23	Tas2r108 (ENSCGRG00001010522) #24	Prss37 (ENSCGRG00001018297) #25	Crot (ENSCGRG00001023042)	Abcb4 (ENSCGRG00001013813)	Abcb1b (ENSCGRG00001002555)	ABCB1 (ENSCGRG00001014754)	Rundc3b (ENSCGRG00001002136)	Slc25a40 (ENSCGRG00001000177)	Dbf4 (ENSCGRG00001014352)	Adam22 (ENSCGRG00001024130)	Sri (ENSCGRG00001010200)	Steap4 (ENSCGRG00001019212)	Zfp804b (ENSCGRG00001000316)	Tex47 (ENSCGRG00001007269)
Chinese hamster chok1gshd	MODERN SPECIES	111	Cnr1 (ENSCGRG00001010105)	Spaca1 (ENSCGRG00001016168)	Akirin2 (ENSCGRG00001013427)	Orc3 (ENSCGRG00001023069)	Rars2 (ENSCGRG00001021675)	SLC35A1 (ENSCGRG00001019920)	Cfap206 (ENSCGRG00001002156)	ENSCGRG00001014099	Smim8 (ENSCGRG00001012821)	ENSCGRG00001006646	Zfp292 (ENSCGRG00001003267)	Cga (ENSCGRG00001000454)	ENSCGRG00001024026	ENSCGRG00001023523	Mob3b (ENSCGRG00001022528)	ENSCGRG00001021493 #22	ENSCGRG00001006221	C9orf72 (ENSCGRG00001013910)	Lingo2 (ENSCGRG00001009497)	ENSCGRG00001010834	1700009N14Rik (ENSCGRG00001004727)	Aco1 (ENSCGRG00001024337)	Rigi (ENSCGRG00001024123)	Topors (ENSCGRG00001022117)	Ndufb6 (ENSCGRG00001021089)	Tmem215 (ENSCGRG00001009559)	Aptx (ENSCGRG00001000705)	Dnaja1 (ENSCGRG00001009232)	Smu1 (ENSCGRG00001023488)	B4galt1 (ENSCGRG00001014638)	Spink4 (ENSCGRG00001023982)
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	817	ENSMAUG00000003611	Rab19 (ENSMAUG00000001491) #10	ENSMAUG00000001183 ##11	Dennd2a (ENSMAUG00000000468) #12	Adck2 (ENSMAUG00000000751) #13	Ndufb2 (ENSMAUG00000000340) #14	Braf (ENSMAUG00000016066) #15	Mrps33 (ENSMAUG00000014314) #17	ENSMAUG00000018327	ENSMAUG00000017929 #18	ENSMAUG00000016360	Agk (ENSMAUG00000015011) #19	Dennd11 (ENSMAUG00000014079) #20	ENSMAUG00000013965	Wee2 (ENSMAUG00000013105) #21	ENSMAUG00000016883 #22	Tas2r108 (ENSMAUG00000015894) #24	Prss37 (ENSMAUG00000014269) #25	Or9a4 (ENSMAUG00000015834) #26	Clec5a (ENSMAUG00000013571) #29	ENSMAUG00000011057 #30	ENSMAUG00000011729
Golden Hamster	MODERN SPECIES	617	Rnls (ENSMAUG00000006476)	ENSMAUG00000004988	Lipf (ENSMAUG00000006602)	Lipk (ENSMAUG00000008826)	Lipn (ENSMAUG00000009129)	Lipm (ENSMAUG00000006798)	Ankrd22 (ENSMAUG00000005961)	ENSMAUG00000004326	Acta2 (ENSMAUG00000007124)	Fas (ENSMAUG00000008875)	Ch25h (ENSMAUG00000001529)	Lipa (ENSMAUG00000004120)	Ifit2 (ENSMAUG00000004507)	ENSMAUG00000004294	ENSMAUG00000004543	ENSMAUG00000006010 #22	Slc16a12 (ENSMAUG00000005932)	Pank1 (ENSMAUG00000004211)	Kif20b (ENSMAUG00000003707)	Htr7 (ENSMAUG00000008537)	Rpp30 (ENSMAUG00000008797)	Ankrd1 (ENSMAUG00000004256)	Pcgf5 (ENSMAUG00000006268)	Hectd2 (ENSMAUG00000005723)	Ppp1r3c (ENSMAUG00000021890)	Tnks2 (ENSMAUG00000002675)	Fgfbp3 (ENSMAUG00000003881)	Btaf1 (ENSMAUG00000003977)	Cpeb3 (ENSMAUG00000002789)	ENSMAUG00000001811	ENSMAUG00000004621
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.w #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.b ##36	ENSGT01050000244883.A.a.a.a.b.k.a.b.a.a ##36	ENSGT01050000244883.A.a.a.a.b.k.a.a ##36	ENSGT00940000162509.l
Prairie vole	MODERN SPECIES	87	Kdm7a (ENSMOCG00000012739) #7	Slc37a3 (ENSMOCG00000013977)	ENSMOCG00000018385	Rab19 (ENSMOCG00000000473) #10	Mkrn1 (ENSMOCG00000006155) ##11	Dennd2a (ENSMOCG00000012296) #12	Adck2 (ENSMOCG00000021171) #13	ENSMOCG00000016120 #14	Braf (ENSMOCG00000023027) #15	ENSMOCG00000016152 #17	ENSMOCG00000020593 #18	ENSMOCG00000000534	Agk (ENSMOCG00000003528) #19	Dennd11 (ENSMOCG00000018809) #20	Wee2 (ENSMOCG00000000778) #21	Ssbp1 (ENSMOCG00000015007) #22	Prss37 (ENSMOCG00000000882) #25	Or9a4 (ENSMOCG00000002678) #26	Clec5a (ENSMOCG00000016188) #29	ENSMOCG00000013070 #30	Moxd2 (ENSMOCG00000014636) #32	Prss58 (ENSMOCG00000001185) #34	Prss59 (ENSMOCG00000004650) #35	ENSMOCG00000003387 ##36	ENSMOCG00000012091 ##36
Northern American deer mouse	MODERN SPECIES	16	Tbxas1 (ENSPEMG00000012189)	Parp12 (ENSPEMG00000023375)	Kdm7a (ENSPEMG00000007158) #7	Slc37a3 (ENSPEMG00000023926)	Rab19 (ENSPEMG00000006800) #10	Mkrn1 (ENSPEMG00000023646) ##11	Dennd2a (ENSPEMG00000021909) #12	Adck2 (ENSPEMG00000021773) #13	ENSPEMG00000023701 #14	Braf (ENSPEMG00000001337) #15	ENSPEMG00000021616 #17	ENSPEMG00000016644 #18	Agk (ENSPEMG00000018886) #19	Dennd11 (ENSPEMG00000009508) #20	Wee2 (ENSPEMG00000012913) #21	Ssbp1 (ENSPEMG00000011838) #22	Tas2r137 (ENSPEMG00000013488) #23	Tas2r108 (ENSPEMG00000026064) #24	Prss37 (ENSPEMG00000017152) #25	Or9a4 (ENSPEMG00000009189) #26	Clec5a (ENSPEMG00000017851) #29	Tas2r138 (ENSPEMG00000001418) ##23	ENSPEMG00000008741 #30	Mgam2-ps (ENSPEMG00000028150) #31	Moxd2 (ENSPEMG00000005786) #32	Prss58 (ENSPEMG00000010113) #34	Prss59 (ENSPEMG00000016197) #35	ENSPEMG00000025308 ##36	ENSPEMG00000027928 ##36	ENSPEMG00000028207 ##36	ENSPEMG00000008477 ##36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1840	Parp12 (ENSNGAG00000015925)	Kdm7a (ENSNGAG00000010381) #7	ENSNGAG00000007888 #9	Rab19 (ENSNGAG00000017844) #10	Mkrn1 (ENSNGAG00000019077) ##11	Dennd2a (ENSNGAG00000016156) #12	Adck2 (ENSNGAG00000010919) #13	Ndufb2 (ENSNGAG00000016898) #14	Braf (ENSNGAG00000014000) #15	ENSNGAG00000011360	Mrps33 (ENSNGAG00000014172) #17	ENSNGAG00000021460 #18	Agk (ENSNGAG00000007692) #19	Dennd11 (ENSNGAG00000011955) #20	ENSNGAG00000019527	Ssbp1 (ENSNGAG00000014269) #22	Tas2r137 (ENSNGAG00000016702) #23	Tas2r108 (ENSNGAG00000015066) #24	Prss37 (ENSNGAG00000000102) #25	Or9a7 (ENSNGAG00000017910) #27	Clec5a (ENSNGAG00000017609) #29	Tas2r138 (ENSNGAG00000015138) ##23	ENSNGAG00000010341 #30
Lesser Egyptian jerboa	MODERN SPECIES	81	Fmc1 (ENSJJAG00000017491)	Luc7l2 (ENSJJAG00000011456)	Hipk2 (ENSJJAG00000019253)	Tbxas1 (ENSJJAG00000020954)	Parp12 (ENSJJAG00000019161)	Slc37a3 (ENSJJAG00000019794)	Rab19 (ENSJJAG00000015955) #10	ENSJJAG00000010761 #11	Dennd2a (ENSJJAG00000017109) #12	ENSJJAG00000000905 #13	Braf (ENSJJAG00000020559) #15	ENSJJAG00000016723 #17	ENSJJAG00000014217 #18	Wee2 (ENSJJAG00000022003) #21	ENSJJAG00000001577	Ssbp1 (ENSJJAG00000016282) #22	Clec5a (ENSJJAG00000017338) #29	ENSJJAG00000013568	ENSJJAG00000017582	Moxd2 (ENSJJAG00000011768) #32	Prss59 (ENSJJAG00000020845) #35	ENSJJAG00000013742 ##36	ENSJJAG00000007203 ##36	Ephb6 (ENSJJAG00000015598)	Trpv6 (ENSJJAG00000010273)	Trpv5 (ENSJJAG00000020226)	Tas2r144 (ENSJJAG00000017432) ##23	ENSJJAG00000012066	Tmem139 (ENSJJAG00000014062)	Casp2 (ENSJJAG00000008256)	Zyx (ENSJJAG00000016066)
Kangaroo rat	MODERN SPECIES	375	Parp12 (ENSDORG00000009525)	Kdm7a (ENSDORG00000012871) #7	Slc37a3 (ENSDORG00000013791)	Rab19 (ENSDORG00000006983) #10	Mkrn1 (ENSDORG00000003480) #11	Dennd2a (ENSDORG00000016236) #12	Adck2 (ENSDORG00000030048) #13	ENSDORG00000009731	Braf (ENSDORG00000009732) #15	ENSDORG00000024624	Mrps33 (ENSDORG00000007444) #17	ENSDORG00000026381 #18	Agk (ENSDORG00000003733) #19	Dennd11 (ENSDORG00000003736) #20	Wee2 (ENSDORG00000015156) #21	Ssbp1 (ENSDORG00000015161) #22	Prss37 (ENSDORG00000015166) #25	Clec5a (ENSDORG00000000839) #29	ENSDORG00000007415 #30	ENSDORG00000007422	Moxd2 (ENSDORG00000007423) #32	Prss58 (ENSDORG00000007425) #34	Prss59 (ENSDORG00000027379) #35	ENSDORG00000007428 ##36	ENSDORG00000026650 #36	ENSDORG00000025187 ##36	ENSDORG00000024335 ##36	ENSDORG00000025731 ##36	ENSDORG00000023156 ##36	ENSDORG00000025009 ##36	ENSDORG00000008690 ##36
Lagomorpha	ANCESTRAL SPECIES	107													ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT00940000153130.b #33	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.b.x ##36	ENSGT00940000154460.a	ENSGT00940000164097 #37
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	1401	APLN (ENSOCUG00000022649)	OCRL (ENSOCUG00000016167)	SMARCA1 (ENSOCUG00000001047)	ENSOCUG00000025977	ENSOCUG00000030104	ENSOCUG00000034526	ENSOCUG00000002602	ENSOCUG00000029410	PRR32 (ENSOCUG00000015056)	ENSOCUG00000000908	ENSOCUG00000010499	ENSOCUG00000006392	ENSOCUG00000023025	TENM1 (ENSOCUG00000005013)	SH2D1A (ENSOCUG00000005012)	ENSOCUG00000022591 #22	STAG2 (ENSOCUG00000009879)	ENSOCUG00000009878	THOC2 (ENSOCUG00000005996)	GRIA3 (ENSOCUG00000000315)	ENSOCUG00000021549	ENSOCUG00000027726	C1GALT1C1 (ENSOCUG00000004781)	ENSOCUG00000014315	CUL4B (ENSOCUG00000015633)	ENSOCUG00000027764	LAMP2 (ENSOCUG00000024954)	ATP1B4 (ENSOCUG00000003951)	TMEM255A (ENSOCUG00000004334)	ZBTB33 (ENSOCUG00000004331)	ENSOCUG00000029262
Rabbit	MODERN SPECIES	18	MDFIC (ENSOCUG00000012455)	TFEC (ENSOCUG00000006292)	TES (ENSOCUG00000008491)	CAV2 (ENSOCUG00000014515)	CAV1 (ENSOCUG00000014520)	MET (ENSOCUG00000013060)	ST7 (ENSOCUG00000016156)	WNT2 (ENSOCUG00000016173)	ASZ1 (ENSOCUG00000015962)	CFTR (ENSOCUG00000010733)	ENSOCUG00000038182	CTTNBP2 (ENSOCUG00000001386)	LSM8 (ENSOCUG00000017359)	ENSOCUG00000021922	ENSOCUG00000032257	ENSOCUG00000023965 #22	ENSOCUG00000037642	KCND2 (ENSOCUG00000004149)	TSPAN12 (ENSOCUG00000001875)	ENSOCUG00000034467	ING3 (ENSOCUG00000001881)	CPED1 (ENSOCUG00000005778)	WNT16 (ENSOCUG00000014744)	FAM3C (ENSOCUG00000003351)	PTPRZ1 (ENSOCUG00000013209)	AASS (ENSOCUG00000013237)	FEZF1 (ENSOCUG00000021285)	ENSOCUG00000039223	ENSOCUG00000033009	CADPS2 (ENSOCUG00000007425)	TAS2R16 (ENSOCUG00000017889) ##23
Rabbit	MODERN SPECIES	491													ENSOCUG00000022873 #18	DENND11 (ENSOCUG00000017559) #20	WEE2 (ENSOCUG00000026396) #21	ENSOCUG00000003799 #22	TAS2R3 (ENSOCUG00000003800) #23	TAS2R4 (ENSOCUG00000003805) #24	PRSS37 (ENSOCUG00000006129) #25	ENSOCUG00000022171 #35	ENSOCUG00000037719	CLEC5A (ENSOCUG00000009582) #29	ENSOCUG00000031008 ##23	MGAM (ENSOCUG00000008177) #30	ENSOCUG00000000872 #31	ENSOCUG00000000387 #32	ENSOCUG00000025914 #33	PRSS58 (ENSOCUG00000000389) #34	ENSOCUG00000000393 #35	ENSOCUG00000025211 ##36	ENSOCUG00000026000 ##36
Pika	MODERN SPECIES	1889													AGK (ENSOPRG00000012230) #19	DENND11 (ENSOPRG00000012249) #20	WEE2 (ENSOPRG00000009103) #21	SSBP1 (ENSOPRG00000003195) #22	TAS2R4 (ENSOPRG00000009115) #24	PRSS37 (ENSOPRG00000009119) #25
Primates	ANCESTRAL SPECIES	12	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00940000163043	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000162509
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b.ib #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.m #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000162509	ENSGT00940000154270.a.b
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	2	KDM7A (ENSMICG00000003175) #7	SLC37A3 (ENSMICG00000015980) #9	RAB19 (ENSMICG00000006614) #10	MKRN1 (ENSMICG00000002114) #11	DENND2A (ENSMICG00000002120) #12	ADCK2 (ENSMICG00000005086) #13	ENSMICG00000005092 #14	BRAF (ENSMICG00000005096) #15	MRPS33 (ENSMICG00000029049) #17	ENSMICG00000028298	ENSMICG00000036507	TMEM178B (ENSMICG00000027101) #18	ENSMICG00000002561 #19	DENND11 (ENSMICG00000002570) #20	WEE2 (ENSMICG00000045942) #21	ENSMICG00000031317 #22	TAS2R5 (ENSMICG00000002588) ##23	PRSS37 (ENSMICG00000043681) #25	OR9A1P (ENSMICG00000047958) #27	CLEC5A (ENSMICG00000001118) #29	ENSMICG00000027436	MGAM (ENSMICG00000001123) #30	ENSMICG00000027181 #31	ENSMICG00000001140 #32	PRSS58 (ENSMICG00000043863) #34	ENSMICG00000028481 #36	ENSMICG00000026754	TRBV15 (ENSMICG00000030792)	ENSMICG00000007358 ##36	ENSMICG00000047513	ENSMICG00000027701
Mouse lemur	MODERN SPECIES	27	TP53I11 (ENSMICG00000033784)	TSPAN18 (ENSMICG00000006504)	CD82 (ENSMICG00000010264)	ALX4 (ENSMICG00000048133)	EXT2 (ENSMICG00000014680)	ENSMICG00000028094	ACCS (ENSMICG00000007981)	ACCSL (ENSMICG00000014661)	ENSMICG00000034539	C11orf96 (ENSMICG00000041610)	ALKBH3 (ENSMICG00000014651)	HSD17B12 (ENSMICG00000014632)	TTC17 (ENSMICG00000014602)	ENSMICG00000014581	LRRC4C (ENSMICG00000047157)	ENSMICG00000043108 #22	IFTAP (ENSMICG00000008620)	TRAF6 (ENSMICG00000008604)	PRR5L (ENSMICG00000047184)	COMMD9 (ENSMICG00000008594)	LDLRAD3 (ENSMICG00000008590)	TRIM44 (ENSMICG00000008587)	FJX1 (ENSMICG00000033879)	PAMR1 (ENSMICG00000003733)	SLC1A2 (ENSMICG00000003719)	CD44 (ENSMICG00000003713)	ENSMICG00000036406	PDHX (ENSMICG00000003700)	APIP (ENSMICG00000003696)	EHF (ENSMICG00000003694)	ENSMICG00000038699
Lemuriformes_a	ANCESTRAL SPECIES	51	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b.ib #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.m #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000162509	ENSGT00940000154270.a.b	ENSGT00940000154270.a.a
Greater bamboo lemur	MODERN SPECIES	70	SLC37A3 (ENSPSMG00000006206) #9	RAB19 (ENSPSMG00000006175) #10	ENSPSMG00000006161 #11	ENSPSMG00000006137	DENND2A (ENSPSMG00000006080) #12	ADCK2 (ENSPSMG00000006015) #13	ENSPSMG00000006007	NDUFB2 (ENSPSMG00000005977) #14	BRAF (ENSPSMG00000005759) #15	ENSPSMG00000005632 #17	ENSPSMG00000005629	TMEM178B (ENSPSMG00000005625) #18	AGK (ENSPSMG00000005473) #19	DENND11 (ENSPSMG00000005424) #20	WEE2 (ENSPSMG00000005416) #21	SSBP1 (ENSPSMG00000005385) #22	TAS2R3 (ENSPSMG00000005351) #23	TAS2R4 (ENSPSMG00000005349) #24	PRSS37 (ENSPSMG00000005348) #25	OR9A1P (ENSPSMG00000005343) #27	OR9A4 (ENSPSMG00000005339) #26	CLEC5A (ENSPSMG00000005337) #29	TAS2R38 (ENSPSMG00000005320) ##23	ENSPSMG00000005316 #31	MGAM (ENSPSMG00000005298) #30	PRSS58 (ENSPSMG00000005244) #34	ENSPSMG00000005238 #35	ENSPSMG00000005226 #36	ENSPSMG00000005215	ENSPSMG00000005211	TRBV9 (ENSPSMG00000005204)
Coquerels sifaka	MODERN SPECIES	430	ENSPCOG00000016270	SLC37A3 (ENSPCOG00000014061) #9	RAB19 (ENSPCOG00000019113) #10	ENSPCOG00000002890 #11	ENSPCOG00000023686	DENND2A (ENSPCOG00000012423) #12	ADCK2 (ENSPCOG00000019938) #13	ENSPCOG00000018417	NDUFB2 (ENSPCOG00000008454) #14	BRAF (ENSPCOG00000024467) #15	ENSPCOG00000015683 #17	TMEM178B (ENSPCOG00000020472) #18	AGK (ENSPCOG00000025807) #19	DENND11 (ENSPCOG00000005094) #20	WEE2 (ENSPCOG00000016620) #21	SSBP1 (ENSPCOG00000021009) #22	PRSS37 (ENSPCOG00000020043) #25	ENSPCOG00000027867 #29	MGAM (ENSPCOG00000014465) #30
Bushbaby	MODERN SPECIES	164	TBXAS1 (ENSOGAG00000008899)	PARP12 (ENSOGAG00000008906)	KDM7A (ENSOGAG00000007678) #7	SLC37A3 (ENSOGAG00000029064) #9	RAB19 (ENSOGAG00000009876) #10	MKRN1 (ENSOGAG00000009877) ##11	DENND2A (ENSOGAG00000031447) #12	ADCK2 (ENSOGAG00000009639) #13	NDUFB2 (ENSOGAG00000009644) #14	BRAF (ENSOGAG00000009646) #15	MRPS33 (ENSOGAG00000017200) #17	ENSOGAG00000027045 #18	AGK (ENSOGAG00000016647) #19	DENND11 (ENSOGAG00000016654) #20	ENSOGAG00000032705 #21	SSBP1 (ENSOGAG00000016661) #22	TAS2R3 (ENSOGAG00000034844) #23	PRSS37 (ENSOGAG00000016666) #25	OR9A1P (ENSOGAG00000025142) #27	OR9A4 (ENSOGAG00000029429) #26	CLEC5A (ENSOGAG00000011563) #29	TAS2R38 (ENSOGAG00000011567) ##23	MGAM (ENSOGAG00000026892) #30	ENSOGAG00000032017 #31	ENSOGAG00000011568	ENSOGAG00000011575 #32	PRSS58 (ENSOGAG00000011579) #34	ENSOGAG00000029218 #35	ENSOGAG00000029366 #36	ENSOGAG00000027692	ENSOGAG00000024305
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000162509.f	ENSGT01050000244883.A.a.a.a.b.l #36
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000162509.f	ENSGT00940000164097 #37
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000162509.f	ENSGT00940000154460.a.r.a	ENSGT00940000164097 #37
Rhinopithecus	ANCESTRAL SPECIES	141					ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a.c #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a.r.a	ENSGT00940000164097 #37	ENSGT00940000154460.b.e.a.b	ENSGT00940000154270.a.a	ENSGT00940000154542.b.b.k	ENSGT00940000154270.a.b.e.a.a.a.a.a
Black snub-nosed monkey	MODERN SPECIES	1030				MKRN1 (ENSRBIG00000027680) ##11	DENND2A (ENSRBIG00000033715) #12	ADCK2 (ENSRBIG00000034656) #13	NDUFB2 (ENSRBIG00000019926) #14	BRAF (ENSRBIG00000034807) #15	ENSRBIG00000029491	MRPS33 (ENSRBIG00000009406) #17	TMEM178B (ENSRBIG00000021689) #18	AGK (ENSRBIG00000032192) #19	ENSRBIG00000000681	DENND11 (ENSRBIG00000000540) #20	WEE2 (ENSRBIG00000031199) #21	SSBP1 (ENSRBIG00000028396) #22	TAS2R5 (ENSRBIG00000006452) ##23	PRSS37 (ENSRBIG00000038319) #25	OR9A4 (ENSRBIG00000031832) #26	CLEC5A (ENSRBIG00000018399) #29	MGAM (ENSRBIG00000027925) #30	MGAM2 (ENSRBIG00000029407) #31	ENSRBIG00000032600 #32	PRSS58 (ENSRBIG00000040803) #34	ENSRBIG00000041017 #36	TRBV2 (ENSRBIG00000031390)	TRBV3-1 (ENSRBIG00000041947) #37	TRBV7-3 (ENSRBIG00000019786)	TRBV9 (ENSRBIG00000010651)	TRBV10-1 (ENSRBIG00000007349)	TRBV7-4 (ENSRBIG00000037535)
Golden snub-nosed monkey	MODERN SPECIES	843				MKRN1 (ENSRROG00000037557) ##11	DENND2A (ENSRROG00000034382) #12	ADCK2 (ENSRROG00000044522) #13	NDUFB2 (ENSRROG00000029902) #14	BRAF (ENSRROG00000010145) #15	ENSRROG00000012111	MRPS33 (ENSRROG00000036028) #17	TMEM178B (ENSRROG00000039953) #18	ENSRROG00000033402 #19	ENSRROG00000021882	DENND11 (ENSRROG00000031612) #20	WEE2 (ENSRROG00000013594) #21	SSBP1 (ENSRROG00000029359) #22	TAS2R5 (ENSRROG00000019559) ##23	PRSS37 (ENSRROG00000039139) #25	OR9A4 (ENSRROG00000010627) #26	CLEC5A (ENSRROG00000039465) #29	ENSRROG00000038256 #30
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000162509.f	ENSGT00940000154460.a.r.a.b	ENSGT00940000164097 #37
Vervet Monkey	MODERN SPECIES	13	KDM7A (ENSCSAG00000008271) #7	ENSCSAG00000019149	SLC37A3 (ENSCSAG00000008259) #9	RAB19 (ENSCSAG00000008251) #10	MKRN1 (ENSCSAG00000008246) ##11	DENND2A (ENSCSAG00000008235) #12	ADCK2 (ENSCSAG00000008230) #13	NDUFB2 (ENSCSAG00000008224) #14	BRAF (ENSCSAG00000008218) #15	MRPS33 (ENSCSAG00000008211) #17	ENSCSAG00000008209 #18	ENSCSAG00000008203 #18	AGK (ENSCSAG00000008178) #19	DENND11 (ENSCSAG00000008128) #20	WEE2 (ENSCSAG00000008117) #21	SSBP1 (ENSCSAG00000008102) #22	TAS2R3 (ENSCSAG00000019150) #23	TAS2R4 (ENSCSAG00000019151) #24	TAS2R5 (ENSCSAG00000019152) ##23	PRSS37 (ENSCSAG00000008093) #25	CLEC5A (ENSCSAG00000008078) #29	TAS2R38 (ENSCSAG00000019153) ##23	MGAM (ENSCSAG00000008027) #30	ENSCSAG00000007937 #31	ENSCSAG00000007921 #32	PRSS58 (ENSCSAG00000007906) #34	ENSCSAG00000007896 #36	ENSCSAG00000019154	ENSCSAG00000007880	TRBV3-1 (ENSCSAG00000007874) #37	ENSCSAG00000007869
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401.k.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00910000147594	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000162509.f	ENSGT00940000154460.a.r.a.b.b	ENSGT00940000164097 #37	ENSGT00940000162509.e.a.e
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401.k.b #17	ENSGT00390000011401.k.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00910000147594	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000154460.a.r.a.b.a	ENSGT00940000154460.a.r.b	ENSGT00940000154542.b.a.k.b.b	ENSGT00940000154460.b.e.a.b
Olive baboon	MODERN SPECIES	14	PARP12 (ENSPANG00000022225)	KDM7A (ENSPANG00000011491) #7	SLC37A3 (ENSPANG00000007700) #9	RAB19 (ENSPANG00000032483) #10	MKRN1 (ENSPANG00000017280) ##11	DENND2A (ENSPANG00000018260) #12	ADCK2 (ENSPANG00000007837) #13	NDUFB2 (ENSPANG00000022006) #14	BRAF (ENSPANG00000004965) #15	MRPS33 (ENSPANG00000048937) #17	TMEM178B (ENSPANG00000029596) #18	ENSPANG00000051109	AGK (ENSPANG00000001222) #19	DENND11 (ENSPANG00000001223) #20	WEE2 (ENSPANG00000008933) #21	SSBP1 (ENSPANG00000009820) #22	TAS2R3 (ENSPANG00000037537) #23	TAS2R4 (ENSPANG00000037718) #24	TAS2R5 (ENSPANG00000047103) ##23	PRSS37 (ENSPANG00000016705) #25	OR9A1P (ENSPANG00000048516) #27	CLEC5A (ENSPANG00000016706) #29	TAS2R38 (ENSPANG00000010961) ##23	ENSPANG00000038896 #31	PRSS58 (ENSPANG00000016708) #34	ENSPANG00000048652 #35	TRBV5-1 (ENSPANG00000042759)	TRBV7-2 (ENSPANG00000044070)	TRBV7-3 (ENSPANG00000039849)	TRBV9 (ENSPANG00000034082)	TRBV10-1 (ENSPANG00000048649)
Cercopithecinae_d	ANCESTRAL SPECIES	25	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401.k.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00910000147594	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT00940000162509.f	ENSGT00940000154460.a.r.a.b.b	ENSGT00940000154460.a.r.a.a	ENSGT00940000154460.a.r.a.b.a	ENSGT00940000154460.a.r.b	ENSGT00940000154542.b.a.k.b.b	ENSGT00940000154460.b.e.a.b	ENSGT00940000154270.a.a
Drill	MODERN SPECIES	1178	KDM7A (ENSMLEG00000039850) #7	SLC37A3 (ENSMLEG00000034527) #9	RAB19 (ENSMLEG00000032277) #10	MKRN1 (ENSMLEG00000033107) ##11	DENND2A (ENSMLEG00000040269) #12	ADCK2 (ENSMLEG00000038169) #13	NDUFB2 (ENSMLEG00000034682) #14	BRAF (ENSMLEG00000041508) #15	ENSMLEG00000043989 #17	TMEM178B (ENSMLEG00000030888) #18	AGK (ENSMLEG00000043143) #19	ENSMLEG00000011841	ENSMLEG00000029548	DENND11 (ENSMLEG00000035429) #20	WEE2 (ENSMLEG00000023635) #21	SSBP1 (ENSMLEG00000039541) #22	PRSS37 (ENSMLEG00000039528) #25	CLEC5A (ENSMLEG00000014115) #29	TAS2R38 (ENSMLEG00000011241) ##23	MGAM (ENSMLEG00000028247) #30
Sooty mangabey	MODERN SPECIES	148	PARP12 (ENSCATG00000029372)	KDM7A (ENSCATG00000031213) #7	SLC37A3 (ENSCATG00000039038) #9	RAB19 (ENSCATG00000029739) #10	MKRN1 (ENSCATG00000039778) ##11	DENND2A (ENSCATG00000035508) #12	ADCK2 (ENSCATG00000029766) #13	NDUFB2 (ENSCATG00000022754) #14	BRAF (ENSCATG00000034341) #15	MRPS33 (ENSCATG00000026661) #17	TMEM178B (ENSCATG00000044426) #18	AGK (ENSCATG00000043619) #19	ENSCATG00000000122	DENND11 (ENSCATG00000036082) #20	WEE2 (ENSCATG00000007238) #21	SSBP1 (ENSCATG00000035429) #22	PRSS37 (ENSCATG00000040618) #25	OR9A1P (ENSCATG00000018573) #27	CLEC5A (ENSCATG00000040577) #29	TAS2R38 (ENSCATG00000018198) ##23	MGAM (ENSCATG00000040266) #30	MGAM2 (ENSCATG00000032547) #31	PRSS58 (ENSCATG00000018483) #34	ENSCATG00000019590	ENSCATG00000018350	ENSCATG00000018560
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401.k.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00910000147594	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000162509.f	ENSGT00940000154460.a.r.a.b.b	ENSGT00940000162509.e.a.e	ENSGT00940000154460.a.r.a.a
Pig-tailed macaque	MODERN SPECIES	479	KDM7A (ENSMNEG00000028468) #7	SLC37A3 (ENSMNEG00000044880) #9	RAB19 (ENSMNEG00000043765) #10	MKRN1 (ENSMNEG00000040268) ##11	DENND2A (ENSMNEG00000036269) #12	ADCK2 (ENSMNEG00000031935) #13	NDUFB2 (ENSMNEG00000044806) #14	BRAF (ENSMNEG00000024672) #15	MRPS33 (ENSMNEG00000044224) #17	TMEM178B (ENSMNEG00000028782) #18	AGK (ENSMNEG00000029923) #19	ENSMNEG00000003382	ENSMNEG00000001410	DENND11 (ENSMNEG00000034919) #20	WEE2 (ENSMNEG00000032770) #21	SSBP1 (ENSMNEG00000034892) #22	PRSS37 (ENSMNEG00000045224) #25	CLEC5A (ENSMNEG00000039445) #29	TAS2R38 (ENSMNEG00000003977) ##23	MGAM (ENSMNEG00000032400) #30	MGAM2 (ENSMNEG00000040988) #31	PRSS58 (ENSMNEG00000036745) #34	ENSMNEG00000030226 #35	ENSMNEG00000008461	ENSMNEG00000013561	TRBV7-3 (ENSMNEG00000044967)	TRBV9 (ENSMNEG00000017269)	TRBV10-1 (ENSMNEG00000010145)	ENSMNEG00000037773	ENSMNEG00000008940	ENSMNEG00000044591
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401.k.b #17	ENSGT00390000011401.k.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000162509.f	ENSGT00940000154460.a.r.a.b.b	ENSGT00940000162509.e.a.e	ENSGT00940000154460.a.r.a.a
Rhesus	MODERN SPECIES	13	PARP12 (ENSMMUG00000004224)	KDM7A (ENSMMUG00000008126) #7	ENSMMUG00000053674	SLC37A3 (ENSMMUG00000015870) #9	RAB19 (ENSMMUG00000010419) #10	MKRN1 (ENSMMUG00000010420) ##11	DENND2A (ENSMMUG00000042299) #12	ADCK2 (ENSMMUG00000015282) #13	NDUFB2 (ENSMMUG00000015284) #14	BRAF (ENSMMUG00000042793) #15	MRPS33 (ENSMMUG00000050535) #17	TMEM178B (ENSMMUG00000041051) #18	AGK (ENSMMUG00000021017) #19	DENND11 (ENSMMUG00000039865) #20	WEE2 (ENSMMUG00000044167) #21	SSBP1 (ENSMMUG00000022442) #22	TAS2R3 (ENSMMUG00000059165) #23	TAS2R4 (ENSMMUG00000022439) #24	TAS2R5 (ENSMMUG00000056110) ##23	PRSS37 (ENSMMUG00000053855) #25	OR9A4 (ENSMMUG00000042443) #26	CLEC5A (ENSMMUG00000016271) #29	TAS2R38 (ENSMMUG00000055710) ##23	MGAM (ENSMMUG00000016273) #30	MGAM2 (ENSMMUG00000019937) #31	PRSS58 (ENSMMUG00000005931) #34	ENSMMUG00000039273 #35	ENSMMUG00000060990	ENSMMUG00000061142	ENSMMUG00000020332	ENSMMUG00000060238
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000055772	SLC37A3 (ENSMFAG00000038757) #9	RAB19 (ENSMFAG00000003529) #10	MKRN1 (ENSMFAG00000000737) ##11	DENND2A (ENSMFAG00000043828) #12	ENSMFAG00000048196	ADCK2 (ENSMFAG00000007386) #13	NDUFB2 (ENSMFAG00000048116) #14	BRAF (ENSMFAG00000001069) #15	ENSMFAG00000057380	MRPS33 (ENSMFAG00000032116) #17	TMEM178B (ENSMFAG00000043984) #18	AGK (ENSMFAG00000039906) #19	DENND11 (ENSMFAG00000002632) #20	WEE2 (ENSMFAG00000038833) #21	SSBP1 (ENSMFAG00000032819) #22	TAS2R3 (ENSMFAG00000063716) #23	TAS2R4 (ENSMFAG00000061404) #24	TAS2R5 (ENSMFAG00000057048) ##23	PRSS37 (ENSMFAG00000033856) #25	OR9A4 (ENSMFAG00000042777) #26	CLEC5A (ENSMFAG00000036311) #29	TAS2R38 (ENSMFAG00000059261) ##23	MGAM (ENSMFAG00000000048) #30	MGAM2 (ENSMFAG00000040766) #31	PRSS58 (ENSMFAG00000040057) #34	ENSMFAG00000039259 #35	ENSMFAG00000065633	ENSMFAG00000059294	ENSMFAG00000048982 #37	ENSMFAG00000055769
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000164097.f.b #37	ENSGT00940000162509.e.a	ENSGT00940000154270.a.b.e.b
Gibbon	MODERN SPECIES	3	PARP12 (ENSNLEG00000001802)	KDM7A (ENSNLEG00000001833) #7	SLC37A3 (ENSNLEG00000001879) #9	RAB19 (ENSNLEG00000030911) #10	MKRN1 (ENSNLEG00000001921) ##11	DENND2A (ENSNLEG00000002026) #12	ADCK2 (ENSNLEG00000002068) #13	NDUFB2 (ENSNLEG00000035760) #14	BRAF (ENSNLEG00000002139) #15	MRPS33 (ENSNLEG00000002278) #17	TMEM178B (ENSNLEG00000029749) #18	AGK (ENSNLEG00000002291) #19	ENSNLEG00000027915	DENND11 (ENSNLEG00000030404) #20	WEE2 (ENSNLEG00000002356) #21	SSBP1 (ENSNLEG00000002361) #22	TAS2R3 (ENSNLEG00000018419) #23	PRSS37 (ENSNLEG00000002371) #25	OR9A4 (ENSNLEG00000002393) #26	CLEC5A (ENSNLEG00000002394) #29	TAS2R38 (ENSNLEG00000018421) ##23	MGAM (ENSNLEG00000002429) #30	MGAM2 (ENSNLEG00000002615) #31	PRSS58 (ENSNLEG00000002623) #34	ENSNLEG00000028355 #36	ENSNLEG00000035493	ENSNLEG00000035397 #37	ENSNLEG00000032489	ENSNLEG00000031773 #37	ENSNLEG00000034334 #37	ENSNLEG00000034777
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00940000164097.f.b #37	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a
Orangutan	MODERN SPECIES	20	TBXAS1 (ENSPPYG00000018052)	PARP12 (ENSPPYG00000018053)	KDM7A (ENSPPYG00000018054) #7	SLC37A3 (ENSPPYG00000018055) #9	RAB19 (ENSPPYG00000018056) #10	MKRN1 (ENSPPYG00000018057) ##11	DENND2A (ENSPPYG00000018058) #12	ADCK2 (ENSPPYG00000018059) #13	NDUFB2 (ENSPPYG00000018060) #14	BRAF (ENSPPYG00000018061) #15	MRPS33 (ENSPPYG00000036255) #17	TMEM178B (ENSPPYG00000029744) #18	AGK (ENSPPYG00000018064) #19	DENND11 (ENSPPYG00000033394) #20	WEE2 (ENSPPYG00000018066) #21	SSBP1 (ENSPPYG00000018068) #22	TAS2R3 (ENSPPYG00000018069) #23	TAS2R4 (ENSPPYG00000035803) #24	TAS2R5 (ENSPPYG00000018267) ##23	PRSS37 (ENSPPYG00000018071) #25	CLEC5A (ENSPPYG00000018072) #29	ENSPPYG00000018074 #30	MGAM2 (ENSPPYG00000018075) #31	PRSS58 (ENSPPYG00000018076) #34	ENSPPYG00000040295 #35	ENSPPYG00000030426 #37	ENSPPYG00000038450	ENSPPYG00000030363	ENSPPYG00000037063 #37	ENSPPYG00000037561	ENSPPYG00000038711
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000164097.f.a #37	ENSGT00940000162509.e.a
Gorilla	MODERN SPECIES	20	PARP12 (ENSGGOG00000000828)	KDM7A (ENSGGOG00000003842) #7	SLC37A3 (ENSGGOG00000011497) #9	RAB19 (ENSGGOG00000000615) #10	ENSGGOG00000023977 ##11	DENND2A (ENSGGOG00000011405) #12	ADCK2 (ENSGGOG00000012327) #13	ENSGGOG00000024622	BRAF (ENSGGOG00000017089) #15	MRPS33 (ENSGGOG00000009563) #17	TMEM178B (ENSGGOG00000025163) #18	AGK (ENSGGOG00000008821) #19	ENSGGOG00000037770	DENND11 (ENSGGOG00000008828) #20	WEE2 (ENSGGOG00000009609) #21	SSBP1 (ENSGGOG00000009615) #22	TAS2R3 (ENSGGOG00000009618) #23	TAS2R4 (ENSGGOG00000023731) #24	TAS2R5 (ENSGGOG00000009622) ##23	PRSS37 (ENSGGOG00000010592) #25	OR9A4 (ENSGGOG00000006400) #26	CLEC5A (ENSGGOG00000006401) #29	TAS2R38 (ENSGGOG00000000269) ##23	MGAM (ENSGGOG00000003832) #30	MGAM2 (ENSGGOG00000010479) #31	PRSS58 (ENSGGOG00000008370) #34	ENSGGOG00000038309 #36	ENSGGOG00000042183	ENSGGOG00000043553 #37	TRBV4-2 (ENSGGOG00000026368)	TRBV7-3 (ENSGGOG00000006487)
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT00940000154460.a	ENSGT00940000164097.f.a #37	ENSGT00940000162509.e.a	ENSGT00940000154270.a.b.e.b
Human	MODERN SPECIES	19	TBXAS1 (ENSG00000059377)	PARP12 (ENSG00000059378)	KDM7A (ENSG00000006459) #7	SLC37A3 (ENSG00000157800) #9	RAB19 (ENSG00000146955) #10	MKRN1 (ENSG00000133606) ##11	DENND2A (ENSG00000146966) #12	ADCK2 (ENSG00000133597) #13	NDUFB2 (ENSG00000090266) #14	BRAF (ENSG00000157764) #15	MRPS33 (ENSG00000090263) #17	TMEM178B (ENSG00000261115) #18	AGK (ENSG00000006530) #19	DENND11 (ENSG00000257093) #20	WEE2 (ENSG00000214102) #21	SSBP1 (ENSG00000106028) #22	TAS2R3 (ENSG00000127362) #23	TAS2R4 (ENSG00000127364) #24	TAS2R5 (ENSG00000127366) ##23	PRSS37 (ENSG00000165076) #25	OR9A1P (ENSG00000237621) #27	MGAM (ENSG00000257335) #30	OR9A4 (ENSG00000258083) #26	CLEC5A (ENSG00000258227) #29	TAS2R38 (ENSG00000257138) ##23	MGAM2 (ENSG00000257743) #31	PRSS58 (ENSG00000258223) #34	TRBV2 (ENSG00000226660)	TRBV3-1 (ENSG00000237702) #37	TRBV4-1 (ENSG00000211710)	TRBV5-1 (ENSG00000211734)
Pan	ANCESTRAL SPECIES	13	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154.a #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.c.a #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000164718 #27	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT00940000154460.a	ENSGT00940000164097.f.a #37	ENSGT00940000162509.e.b.a	ENSGT00940000162509.e.b.b
Bonobo	MODERN SPECIES	20	PARP12 (ENSPPAG00000029869)	KDM7A (ENSPPAG00000036374) #7	SLC37A3 (ENSPPAG00000033097) #9	RAB19 (ENSPPAG00000032853) #10	MKRN1 (ENSPPAG00000040448) ##11	DENND2A (ENSPPAG00000026508) #12	ADCK2 (ENSPPAG00000034476) #13	NDUFB2 (ENSPPAG00000039747) #14	BRAF (ENSPPAG00000036004) #15	MRPS33 (ENSPPAG00000043201) #17	TMEM178B (ENSPPAG00000002445) #18	AGK (ENSPPAG00000041636) #19	ENSPPAG00000029884	ENSPPAG00000043213 #20	WEE2 (ENSPPAG00000021161) #21	SSBP1 (ENSPPAG00000035223) #22	TAS2R3 (ENSPPAG00000006982) #23	TAS2R4 (ENSPPAG00000007093) #24	TAS2R5 (ENSPPAG00000009772) ##23	PRSS37 (ENSPPAG00000033068) #25	CLEC5A (ENSPPAG00000037590) #29	TAS2R38 (ENSPPAG00000019525) ##23	MGAM (ENSPPAG00000026007) #30	MGAM2 (ENSPPAG00000034149) #31	PRSS58 (ENSPPAG00000042862) #34	ENSPPAG00000026493	ENSPPAG00000025154 #37	ENSPPAG00000000478	ENSPPAG00000025019	TRBV7-3 (ENSPPAG00000000508)	ENSPPAG00000009837
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	20	PARP12 (ENSPTRG00000019761)	KDM7A (ENSPTRG00000019762) #7	SLC37A3 (ENSPTRG00000019764) #9	RAB19 (ENSPTRG00000019765) #10	MKRN1 (ENSPTRG00000019766) ##11	DENND2A (ENSPTRG00000019768) #12	ADCK2 (ENSPTRG00000019770) #13	NDUFB2 (ENSPTRG00000019771) #14	BRAF (ENSPTRG00000019769) #15	MRPS33 (ENSPTRG00000019773) #17	TMEM178B (ENSPTRG00000047632) #18	AGK (ENSPTRG00000019775) #19	DENND11 (ENSPTRG00000019776) #20	ENSPTRG00000049781	WEE2 (ENSPTRG00000028383) #21	SSBP1 (ENSPTRG00000019778) #22	TAS2R3 (ENSPTRG00000019779) #23	TAS2R4 (ENSPTRG00000040235) #24	TAS2R5 (ENSPTRG00000019780) ##23	PRSS37 (ENSPTRG00000019781) #25	ENSPTRG00000040014 #26	CLEC5A (ENSPTRG00000019784) #29	TAS2R38 (ENSPTRG00000019785) ##23	MGAM (ENSPTRG00000019786) #30	ENSPTRG00000028382 #31	PRSS58 (ENSPTRG00000019787) #34	ENSPTRG00000048550	ENSPTRG00000050465 #37	ENSPTRG00000049536	ENSPTRG00000048217	ENSPTRG00000042693
Chimpanzee	MODERN SPECIES	579					ENSPTRG00000050561 #10	ENSPTRG00000042822 ##11	ENSPTRG00000051830 #12	ENSPTRG00000047707 #13	ENSPTRG00000047330 #14	ENSPTRG00000051563 #15	ENSPTRG00000051927 #17	ENSPTRG00000045391 #18	ENSPTRG00000050750 #19	ENSPTRG00000044959	ENSPTRG00000044303 #20	ENSPTRG00000052697 #22	ENSPTRG00000050321 #23	ENSPTRG00000047526 #24	ENSPTRG00000043567 ##23	ENSPTRG00000045859 #25	OR9A1P (ENSPTRG00000043919) #27	ENSPTRG00000047806 #26	ENSPTRG00000044670 #29	TAS2R38 (ENSPTRG00000045865) ##23	ENSPTRG00000050880 #30	ENSPTRG00000048454 #31	ENSPTRG00000044453 #34	ENSPTRG00000051456	ENSPTRG00000048222 #37	ENSPTRG00000044775	ENSPTRG00000043817
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.e.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.q.a #22	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000164097 #37	ENSGT00940000162509.e.b	ENSGT00940000162509.e.a	ENSGT00940000154270.a.b.e.b	ENSGT00940000154542.b.a
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.e.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.q.a #22	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT00940000154460.a	ENSGT00940000164097 #37	ENSGT00940000162509.e.b	ENSGT00940000162509.e.a	ENSGT00940000154270.a.b.e.b	ENSGT00940000154542.b.a
Cebidae_a	ANCESTRAL SPECIES	33	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401.e.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00910000146873	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796.q.a #22	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00940000163091 #31	ENSGT01050000244883.A.a.a.a.b.l #36	ENSGT01020000230389.b.a.a.a.b #34	ENSGT00940000154460.a	ENSGT00940000164097 #37	ENSGT00940000162509.e.b	ENSGT00940000154460.b.e.a.b	ENSGT00940000154542.b.b.k	ENSGT00940000154460.b.f	ENSGT00940000162707.m.b	ENSGT00940000155819.d
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	260	KDM7A (ENSCCAG00000036194) #7	ENSCCAG00000028375	SLC37A3 (ENSCCAG00000026819) #9	RAB19 (ENSCCAG00000029268) #10	MKRN1 (ENSCCAG00000037582) ##11	DENND2A (ENSCCAG00000027573) #12	ENSCCAG00000008528 #13	NDUFB2 (ENSCCAG00000029688) #14	BRAF (ENSCCAG00000031128) #15	ENSCCAG00000027727	ENSCCAG00000035520 #17	TMEM178B (ENSCCAG00000032284) #18	AGK (ENSCCAG00000036439) #19	DENND11 (ENSCCAG00000024825) #20	WEE2 (ENSCCAG00000033355) #21	ENSCCAG00000037419 #22	PRSS37 (ENSCCAG00000030678) #25	OR9A4 (ENSCCAG00000037742) #26	CLEC5A (ENSCCAG00000023805) #29	ENSCCAG00000030808 #30
Capuchin	MODERN SPECIES	16	ACOT12 (ENSCCAG00000010251)	SSBP2 (ENSCCAG00000029743)	ATG10 (ENSCCAG00000021612)	ENSCCAG00000023908	RPS23 (ENSCCAG00000022444)	ENSCCAG00000032614	ENSCCAG00000032509	ENSCCAG00000037444	ENSCCAG00000035743	TMEM167A (ENSCCAG00000021704)	XRCC4 (ENSCCAG00000021185)	VCAN (ENSCCAG00000026158)	ENSCCAG00000029740	HAPLN1 (ENSCCAG00000023370)	EDIL3 (ENSCCAG00000010698)	ENSCCAG00000036566 #22	COX7C (ENSCCAG00000021409)	ENSCCAG00000034902	ENSCCAG00000012037	RASA1 (ENSCCAG00000027537)	CCNH (ENSCCAG00000031898)	ENSCCAG00000033383	TMEM161B (ENSCCAG00000025610)	MEF2C (ENSCCAG00000015818)	ENSCCAG00000030581	CETN3 (ENSCCAG00000021491)	MBLAC2 (ENSCCAG00000027096)	POLR3G (ENSCCAG00000032288)	LYSMD3 (ENSCCAG00000032472)	ADGRV1 (ENSCCAG00000034134)	ENSCCAG00000034004
Bolivian squirrel monkey	MODERN SPECIES	77	PARP12 (ENSSBOG00000035883)	KDM7A (ENSSBOG00000028446) #7	ENSSBOG00000034695	RAB19 (ENSSBOG00000027926) #10	ENSSBOG00000023992 ##11	DENND2A (ENSSBOG00000027489) #12	ADCK2 (ENSSBOG00000005779) #13	ENSSBOG00000031343 #14	BRAF (ENSSBOG00000028284) #15	ENSSBOG00000022573 #17	TMEM178B (ENSSBOG00000022271) #18	AGK (ENSSBOG00000019979) #19	ENSSBOG00000031574	DENND11 (ENSSBOG00000034522) #20	WEE2 (ENSSBOG00000027383) #21	ENSSBOG00000029766 #22	PRSS37 (ENSSBOG00000009697) #25	ENSSBOG00000008809	CLEC5A (ENSSBOG00000026187) #29	MGAM (ENSSBOG00000030990) #30	ENSSBOG00000023030 #31	ENSSBOG00000033951 #36	PRSS58 (ENSSBOG00000028857) #34	TRBV2 (ENSSBOG00000018075)	TRBV4-2 (ENSSBOG00000009509)	TRBV7-3 (ENSSBOG00000018082)	TRBV10-1 (ENSSBOG00000016754)	ENSSBOG00000018094	ENSSBOG00000014859	TRBV14 (ENSSBOG00000029655)	TRBV16 (ENSSBOG00000013613)
Mas night monkey	MODERN SPECIES	984	PARP12 (ENSANAG00000027023)	KDM7A (ENSANAG00000020956) #7	SLC37A3 (ENSANAG00000036220) #9	RAB19 (ENSANAG00000031005) #10	MKRN1 (ENSANAG00000036978) ##11	DENND2A (ENSANAG00000034617) #12	ADCK2 (ENSANAG00000031411) #13	NDUFB2 (ENSANAG00000024539) #14	BRAF (ENSANAG00000030685) #15	ENSANAG00000036985 #17	ENSANAG00000035332 #18	AGK (ENSANAG00000034272) #19	ENSANAG00000025415	DENND11 (ENSANAG00000025741) #20	WEE2 (ENSANAG00000028062) #21	SSBP1 (ENSANAG00000021855) #22	PRSS37 (ENSANAG00000025837) #25	ENSANAG00000013359	CLEC5A (ENSANAG00000023741) #29	MGAM (ENSANAG00000026732) #30	MGAM2 (ENSANAG00000028334) #31	PRSS58 (ENSANAG00000025309) #34	TRBV2 (ENSANAG00000019846)	TRBV7-3 (ENSANAG00000025212)	TRBV10-1 (ENSANAG00000019734)	ENSANAG00000020863	TRBV7-9 (ENSANAG00000038442)	ENSANAG00000019721	TRBV16 (ENSANAG00000006214)	ENSANAG00000006270	TRBV24-1 (ENSANAG00000005245)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000002796.q.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002796.q.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002796.q.b #22
Bolivian squirrel monkey	MODERN SPECIES	43	RPS23 (ENSSBOG00000025991)	ENSSBOG00000019560	ENSSBOG00000025673	ENSSBOG00000034795	ENSSBOG00000035740	ENSSBOG00000033727	TMEM167A (ENSSBOG00000031099)	XRCC4 (ENSSBOG00000033444)	VCAN (ENSSBOG00000030525)	HAPLN1 (ENSSBOG00000020151)	EDIL3 (ENSSBOG00000034196)	ENSSBOG00000022503	COX7C (ENSSBOG00000023483)	RASA1 (ENSSBOG00000024025)	CCNH (ENSSBOG00000019490)	ENSSBOG00000028202 #22	TMEM161B (ENSSBOG00000024706)	ENSSBOG00000019037	ENSSBOG00000031181	MEF2C (ENSSBOG00000018897)	CETN3 (ENSSBOG00000033177)	MBLAC2 (ENSSBOG00000022218)	ENSSBOG00000029447	LYSMD3 (ENSSBOG00000036033)	ADGRV1 (ENSSBOG00000031018)	ARRDC3 (ENSSBOG00000022253)	NR2F1 (ENSSBOG00000021749)	ENSSBOG00000034164	FAM172A (ENSSBOG00000019860)	KIAA0825 (ENSSBOG00000032086)	ENSSBOG00000019818
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00390000002796.r #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002796.r #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002796.r #22
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	44	CALU (ENSSBOG00000025729)	OPN1SW (ENSSBOG00000022139)	CCDC136 (ENSSBOG00000028704)	FLNC (ENSSBOG00000025708)	ATP6V1F (ENSSBOG00000029644)	ATP6V1FNB (ENSSBOG00000021896)	KCP (ENSSBOG00000024349)	IRF5 (ENSSBOG00000024381)	TNPO3 (ENSSBOG00000029642)	TSPAN33 (ENSSBOG00000026557)	SMO (ENSSBOG00000034649)	AHCYL2 (ENSSBOG00000027053)	STRIP2 (ENSSBOG00000026530)	SMKR1 (ENSSBOG00000023260)	NRF1 (ENSSBOG00000022785)	ENSSBOG00000016230 #22	UBE2H (ENSSBOG00000003551)	ZC3HC1 (ENSSBOG00000032787)	KLHDC10 (ENSSBOG00000023838)	TMEM209 (ENSSBOG00000034815)	SSMEM1 (ENSSBOG00000018209)	CPA2 (ENSSBOG00000035827)	CPA4 (ENSSBOG00000031999)	CPA5 (ENSSBOG00000024319)	CPA1 (ENSSBOG00000021629)	CEP41 (ENSSBOG00000020133)	ENSSBOG00000027781	COPG2 (ENSSBOG00000031750)	TSGA13 (ENSSBOG00000026243)	KLF14 (ENSSBOG00000005892)	ENSSBOG00000031877
Bolivian squirrel monkey	MODERN SPECIES	42	APIP (ENSSBOG00000027533)	ENSSBOG00000007623	CD44 (ENSSBOG00000020740)	SLC1A2 (ENSSBOG00000031126)	PAMR1 (ENSSBOG00000034633)	TRIM44 (ENSSBOG00000019501)	LDLRAD3 (ENSSBOG00000024561)	COMMD9 (ENSSBOG00000023383)	PRR5L (ENSSBOG00000033062)	TRAF6 (ENSSBOG00000028498)	RAG1 (ENSSBOG00000016673)	RAG2 (ENSSBOG00000017623)	IFTAP (ENSSBOG00000025933)	ENSSBOG00000033020	LRRC4C (ENSSBOG00000018653)	ENSSBOG00000031892 #22	ENSSBOG00000029311	API5 (ENSSBOG00000021448)	TTC17 (ENSSBOG00000027019)	ENSSBOG00000026907	HSD17B12 (ENSSBOG00000023716)	ALKBH3 (ENSSBOG00000023947)	C11orf96 (ENSSBOG00000012454)	ENSSBOG00000024546	ENSSBOG00000020375	ACCS (ENSSBOG00000025833)	EXT2 (ENSSBOG00000012532)	ALX4 (ENSSBOG00000032868)	CD82 (ENSSBOG00000029660)	TSPAN18 (ENSSBOG00000032945)	TP53I11 (ENSSBOG00000028120)
Bolivian squirrel monkey	MODERN SPECIES	68	GASK1B (ENSSBOG00000033158)	TMEM144 (ENSSBOG00000026389)	ENSSBOG00000000044	RXFP1 (ENSSBOG00000024491)	C4orf46 (ENSSBOG00000022705)	ETFDH (ENSSBOG00000019431)	ENSSBOG00000022964	FNIP2 (ENSSBOG00000021113)	C4orf45 (ENSSBOG00000033692)	ENSSBOG00000024250	RAPGEF2 (ENSSBOG00000033382)	ENSSBOG00000030741	FSTL5 (ENSSBOG00000034377)	SLC45A1 (ENSSBOG00000024389)	RERE (ENSSBOG00000028927)	ENSSBOG00000031412 #22	ENSSBOG00000028561	ENSSBOG00000024285	CA6 (ENSSBOG00000026428)	SLC2A7 (ENSSBOG00000022852)	SLC2A5 (ENSSBOG00000029662)	GPR157 (ENSSBOG00000026507)	H6PD (ENSSBOG00000027475)	SPSB1 (ENSSBOG00000035578)	SLC25A33 (ENSSBOG00000026413)	TMEM201 (ENSSBOG00000035187)	PIK3CD (ENSSBOG00000024261)	CLSTN1 (ENSSBOG00000025761)	CTNNBIP1 (ENSSBOG00000032108)	ENSSBOG00000031973	NMNAT1 (ENSSBOG00000022076)
Marmoset	MODERN SPECIES	20	ENSCJAG00000083981	ENSCJAG00000013424	RAB19 (ENSCJAG00000013457) #10	MKRN1 (ENSCJAG00000013474) ##11	DENND2A (ENSCJAG00000013487) #12	ENSCJAG00000074335	ADCK2 (ENSCJAG00000013509) #13	NDUFB2 (ENSCJAG00000013524) #14	BRAF (ENSCJAG00000013536) #15	ENSCJAG00000081978 #17	ENSCJAG00000086471	TMEM178B (ENSCJAG00000013588) #18	AGK (ENSCJAG00000013589) #19	DENND11 (ENSCJAG00000013621) #20	WEE2 (ENSCJAG00000013627) #21	SSBP1 (ENSCJAG00000013650) #22	PRSS37 (ENSCJAG00000013663) #25	ENSCJAG00000004026	ENSCJAG00000077616	CLEC5A (ENSCJAG00000087307) #29	TAS2R38 (ENSCJAG00000013686) ##23	MGAM (ENSCJAG00000013692) #30	MGAM2 (ENSCJAG00000036807) #31	PRSS58 (ENSCJAG00000013813) #34	ENSCJAG00000062999 #35	ENSCJAG00000013826 #36	TRBV2 (ENSCJAG00000076376)	TRBV3-1 (ENSCJAG00000013834) #37	ENSCJAG00000062848	ENSCJAG00000081723	ENSCJAG00000060470
Mas night monkey	MODERN SPECIES	1054	ANKRD50 (ENSANAG00000035078)	FAT4 (ENSANAG00000032727)	INTU (ENSANAG00000030077)	SLC25A31 (ENSANAG00000029731)	HSPA4L (ENSANAG00000029426)	PLK4 (ENSANAG00000033097)	MFSD8 (ENSANAG00000036028)	ENSANAG00000002759	ABHD18 (ENSANAG00000024144)	LARP1B (ENSANAG00000034618)	PGRMC2 (ENSANAG00000036565)	ENSANAG00000035472	ENSANAG00000020721	ENSANAG00000029206	JADE1 (ENSANAG00000033708)	ENSANAG00000018791 #22	SCLT1 (ENSANAG00000028256)	C4orf33 (ENSANAG00000022551)
Tarsier	MODERN SPECIES	2580											MRPS33 (ENSTSYG00000030181) #17	TMEM178B (ENSTSYG00000030068) #18	AGK (ENSTSYG00000014497) #19	DENND11 (ENSTSYG00000014511) #20	WEE2 (ENSTSYG00000002451) #21	SSBP1 (ENSTSYG00000035240) #22
Atlantogenata	ANCESTRAL SPECIES	60	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000183077.a.a.a.a.a.a ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b #36	ENSGT00940000162509	ENSGT00940000154460.a	ENSGT00940000163545.a	ENSGT00530000064313.b
Afrotheria	ANCESTRAL SPECIES	81	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b #36	ENSGT00940000162509	ENSGT00940000154542.b	ENSGT00940000154460.b	ENSGT00940000162707
Afrotheria_a	ANCESTRAL SPECIES	82	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.a.a.b #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24	ENSGT01100000263477.A.a.b ##23	ENSGT00940000161483 #25	ENSGT00940000163413 #26	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.b #34	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b #36	ENSGT00940000162509	ENSGT00940000154542.b	ENSGT00940000154460.b	ENSGT00940000162707
Elephant	MODERN SPECIES	578	TBXAS1 (ENSLAFG00000005713)	PARP12 (ENSLAFG00000005717)	KDM7A (ENSLAFG00000005723) #7	SLC37A3 (ENSLAFG00000018405) #9	RAB19 (ENSLAFG00000006237) #10	MKRN1 (ENSLAFG00000018408) #11	DENND2A (ENSLAFG00000013759) #12	ADCK2 (ENSLAFG00000021772) #13	NDUFB2 (ENSLAFG00000009098) #14	BRAF (ENSLAFG00000016753) #15	MRPS33 (ENSLAFG00000002433) #17	ENSLAFG00000026888 #18	AGK (ENSLAFG00000002479) #19	DENND11 (ENSLAFG00000011516) #20	WEE2 (ENSLAFG00000011523) #21	SSBP1 (ENSLAFG00000011526) #22	TAS2R3 (ENSLAFG00000011535) #23	TAS2R4 (ENSLAFG00000016501) #24	PRSS37 (ENSLAFG00000011538) #25	OR9A4 (ENSLAFG00000021730) #26	CLEC5A (ENSLAFG00000018406) #29	MGAM (ENSLAFG00000021508) #30	ENSLAFG00000016635 #32	PRSS58 (ENSLAFG00000018442) #34	ENSLAFG00000013135 #35	ENSLAFG00000022480 #36	ENSLAFG00000028007 #36	ENSLAFG00000028520 #36	ENSLAFG00000020847 #36	ENSLAFG00000020776 #36	ENSLAFG00000028593
Hyrax	MODERN SPECIES	7270															WEE2 (ENSPCAG00000003311) #21	SSBP1 (ENSPCAG00000003383) #22
Xenarthra	ANCESTRAL SPECIES	961														ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b #23	ENSGT01100000263477.C #24
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	4151										KYNU (ENSDNOG00000037199)	ARHGAP15 (ENSDNOG00000014973)	GTDC1 (ENSDNOG00000033624)	ZEB2 (ENSDNOG00000039558)	ACVR2A (ENSDNOG00000009781)	ORC4 (ENSDNOG00000009805)	ENSDNOG00000040740 #22	MBD5 (ENSDNOG00000017491)
Armadillo	MODERN SPECIES	2175																ENSDNOG00000038246 #22	CSMD1 (ENSDNOG00000002295)	ENSDNOG00000041059
Armadillo	MODERN SPECIES	1560														DENND11 (ENSDNOG00000015863) #20	WEE2 (ENSDNOG00000041471) #21	ENSDNOG00000015867 #22	TAS2R3 (ENSDNOG00000049128) #23	TAS2R4 (ENSDNOG00000017475) #24
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.b ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b.b.b #23	ENSGT01100000263477.A.b.b.a.a.a #23	ENSGT01100000263477.A.b.b.a.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483.b #25	ENSGT00940000161483.a #25	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01050000244883.A.a.a.a.b #36	ENSGT00940000162509.bb.a.b	ENSGT00940000154270	ENSGT00940000162509.bb.a.a.a	ENSGT00940000164371
Opossum	MODERN SPECIES	7	ENSMODG00000013696	RAB19 (ENSMODG00000013653) #10	ENSMODG00000013686 ##11	DENND2A (ENSMODG00000013670) #12	ADCK2 (ENSMODG00000013645) #13	BRAF (ENSMODG00000013637) #15	ENSMODG00000041532	ENSMODG00000040286	ENSMODG00000013621 #17	ENSMODG00000029640 #18	ENSMODG00000027559	ENSMODG00000037920 #18	AGK (ENSMODG00000013616) #19	DENND11 (ENSMODG00000013610) #20	ENSMODG00000013606 #21	SSBP1 (ENSMODG00000038788) #22	T2R3J (ENSMODG00000043417) #23	T2R3A (ENSMODG00000013594) #23	ENSMODG00000046353 #23	T2R3H (ENSMODG00000047607) #23	T2R3F (ENSMODG00000043794) #23	ENSMODG00000051236 #24	ENSMODG00000000003 #25	ENSMODG00000036760 #25	ENSMODG00000024419 #25	ENSMODG00000000013 #29	MGAM (ENSMODG00000000054) #30	ENSMODG00000024400 #30	ENSMODG00000000617 #32	ENSMODG00000000630 #32	ENSMODG00000000671 #36
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.b ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b.b.a #23	ENSGT01100000263477.A.b.b.b.b #23	ENSGT01100000263477.A.b.b.a.a.a #23	ENSGT01100000263477.A.b.b.a.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483.b #25	ENSGT00940000161483.a #25	ENSGT00910000144330 #29	ENSGT01100000263477.A.a.a ##23	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b #36	ENSGT00940000162509.bb.a.b	ENSGT00940000154270
Tasmanian devil	MODERN SPECIES	4	HIPK2 (ENSSHAG00000011202)	TBXAS1 (ENSSHAG00000013042)	PARP12 (ENSSHAG00000014045)	KDM7A (ENSSHAG00000014241) #7	ENSSHAG00000014941	RAB19 (ENSSHAG00000015109) #10	ENSSHAG00000015298 ##11	DENND2A (ENSSHAG00000015503) #12	ADCK2 (ENSSHAG00000015880) #13	BRAF (ENSSHAG00000016011) #15	MRPS33 (ENSSHAG00000020653) #17	TMEM178B (ENSSHAG00000023304) #18	AGK (ENSSHAG00000017516) #19	DENND11 (ENSSHAG00000025914) #20	WEE2 (ENSSHAG00000001703) #21	SSBP1 (ENSSHAG00000001629) #22	ENSSHAG00000024683 #23	ENSSHAG00000028031 #23	ENSSHAG00000004218 #24	ENSSHAG00000022993 #23	ENSSHAG00000004582 #25	ENSSHAG00000004852 #25	ENSSHAG00000028830	ENSSHAG00000022109	ENSSHAG00000005959 ##23	MGAM (ENSSHAG00000006693) #30	ENSSHAG00000001480 #30	ENSSHAG00000004006 #32	ENSSHAG00000004705 #35	ENSSHAG00000004936 #36	ENSSHAG00000031136 #36
Diprotodontia	ANCESTRAL SPECIES	28	ENSGT00940000157742	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.b ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b.b.a #23	ENSGT01100000263477.A.b.b.b.b #23	ENSGT01100000263477.A.b.b.a.a.a #23	ENSGT01100000263477.A.b.b.a.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483.b #25	ENSGT00940000161483.a #25	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT01020000230389.b.a.a.a.a #35	ENSGT01050000244883.A.a.a.a.b #36	ENSGT00940000155819.a.a	ENSGT00940000164102.g	ENSGT00940000164371
Diprotodontia_a	ANCESTRAL SPECIES	27	ENSGT00940000157742	ENSGT00940000157903	ENSGT00940000154649.B	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a.b ##11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00390000002796 #22	ENSGT01100000263477.A.b.b.b.a #23	ENSGT01100000263477.A.b.b.b.b #23	ENSGT01100000263477.A.b.b.a.a.a #23	ENSGT01100000263477.A.b.b.a.b #23	ENSGT01100000263477.C #24	ENSGT00940000161483.b #25	ENSGT00940000161483.a #25	ENSGT00940000155819.a.a	ENSGT01050000244883.A.a.a.a.b #36	ENSGT01020000230389.b.a.a.a.a #35	ENSGT00910000144330 #29	ENSGT00940000161540 #30	ENSGT00530000063085.A.a #32	ENSGT00940000164102.g	ENSGT00940000164371
Common wonbat	MODERN SPECIES	1093	HIPK2 (ENSVURG00010014172)	TBXAS1 (ENSVURG00010014194)	PARP12 (ENSVURG00010014215)	KDM7A (ENSVURG00010014231) #7	SLC37A3 (ENSVURG00010014268) #9	RAB19 (ENSVURG00010014282) #10	ENSVURG00010014287 ##11	DENND2A (ENSVURG00010014300) #12	ADCK2 (ENSVURG00010014316) #13	NDUFB2 (ENSVURG00010014321) #14	BRAF (ENSVURG00010014328) #15	MRPS33 (ENSVURG00010014348) #17	ENSVURG00010014356 #18	AGK (ENSVURG00010014366) #19	DENND11 (ENSVURG00010014403) #20	SSBP1 (ENSVURG00010014427) #22	ENSVURG00010014431 #23	ENSVURG00010014435 #23	ENSVURG00010014448 #23	ENSVURG00010014454 #23	ENSVURG00010014459 #24	ENSVURG00010014463 #25	ENSVURG00010014479 #25	ENSVURG00010014495 #35	ENSVURG00010014506 #29	ENSVURG00010014568 #30
koala	MODERN SPECIES	70	TBXAS1 (ENSPCIG00000036732)	PARP12 (ENSPCIG00000016386)	KDM7A (ENSPCIG00000016381) #7	SLC37A3 (ENSPCIG00000016378) #9	RAB19 (ENSPCIG00000036522) #10	ENSPCIG00000016373 ##11	DENND2A (ENSPCIG00000016371) #12	ADCK2 (ENSPCIG00000016367) #13	NDUFB2 (ENSPCIG00000016365) #14	BRAF (ENSPCIG00000016351) #15	MRPS33 (ENSPCIG00000016348) #17	ENSPCIG00000016346 #18	ENSPCIG00000016343 #18	AGK (ENSPCIG00000016339) #19	DENND11 (ENSPCIG00000016337) #20	SSBP1 (ENSPCIG00000036171) #22	ENSPCIG00000032279 #23	ENSPCIG00000034782 #23	ENSPCIG00000005366 #23	ENSPCIG00000023331 #24	ENSPCIG00000023651 #25	ENSPCIG00000023648 #25	ENSPCIG00000023643 #36	ENSPCIG00000023626 #29	MGAM (ENSPCIG00000023404) #30	ENSPCIG00000009496	ENSPCIG00000034141 #30	ENSPCIG00000022716 #32	ENSPCIG00000034738 #35	ENSPCIG00000004703 #36	ENSPCIG00000035459 #35
Platypus	MODERN SPECIES	1	MYBPC2 (ENSOANG00000003920)	ENSOANG00000003921	SHANK1 (ENSOANG00000045476)	SYT3 (ENSOANG00000045233)	LRRC4B (ENSOANG00000041413)	ASPDH (ENSOANG00000048746)	JOSD2 (ENSOANG00000046169)	ADCK2 (ENSOANG00000049900) #13	ENSOANG00000042309 #14	BRAF (ENSOANG00000013389) #15	ENSOANG00000013387 #17	TMEM178B (ENSOANG00000046717) #18	AGK (ENSOANG00000001364) #19	DENND11 (ENSOANG00000001367) #20	ENSOANG00000009220 #21	SSBP1 (ENSOANG00000046030) #22	CREB3L2 (ENSOANG00000049411)	DGKI (ENSOANG00000005017)	PTN (ENSOANG00000005016)	CHRM2 (ENSOANG00000005015)	ENSOANG00000005013	ENSOANG00000045604	FAM180A (ENSOANG00000040937)	SLC13A4 (ENSOANG00000005009)	NUP205 (ENSOANG00000005007)	CNOT4 (ENSOANG00000005006)	ENSOANG00000049125	ENSOANG00000049552	WDR91 (ENSOANG00000005003)	ENSOANG00000047333	ENSOANG00000005002
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00940000165307.c	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b
Archosauria	ANCESTRAL SPECIES	4	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Aves	ANCESTRAL SPECIES	1	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Neognathae	ANCESTRAL SPECIES	3	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT01080000257332.A.b.b	ENSGT00940000154136.k.b.b.b	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.k #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765.f	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961.k #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765.f	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Turkey	MODERN SPECIES		ENSMGAG00000012823	ENSMGAG00000019062	ASCL4 (ENSMGAG00000012814)	ENSMGAG00000017736	ENSMGAG00000012805	ENSMGAG00000021425	ENSMGAG00000012777	ENSMGAG00000012781	ENSMGAG00000022100	TIMP3 (ENSMGAG00000012775)	ENSMGAG00000012768	ENSMGAG00000019460	ENSMGAG00000017620	ENSMGAG00000013250	ENSMGAG00000022233	ENSMGAG00000013259 #22	ENSMGAG00000013242 #21	ENSMGAG00000013239 #20	ENSMGAG00000021045 #19	ENSMGAG00000013234 #19	ENSMGAG00000013232 #18	MRPS33 (ENSMGAG00000013231) #17	ENSMGAG00000013219 #15	ENSMGAG00000018064 #14	ENSMGAG00000018632 #15	ENSMGAG00000021239	ADCK2 (ENSMGAG00000013216) #13	ENSMGAG00000013210 #12	ENSMGAG00000019620	ENSMGAG00000021516 #12	ENSMGAG00000013205 #10
Chicken	MODERN SPECIES		SLC37A3 (ENSGALG00010013328)	RAB19 (ENSGALG00010013337) #10	MKRN4P (ENSGALG00010013348) #11	ENSGALG00010013362	DENND2A (ENSGALG00010013381) #12	ADCK2 (ENSGALG00010013393) #13	ENSGALG00010013404	NDUFB2 (ENSGALG00010013416) #14	BRAF (ENSGALG00010013466) #15	MRPS33 (ENSGALG00010013510) #17	ENSGALG00010013519	TMEM178B (ENSGALG00010013523) #18	AGK (ENSGALG00010013561) #19	DENND11 (ENSGALG00010013572) #20	WEE2 (ENSGALG00010013595) #21	SSBP1 (ENSGALG00010013625) #22	CREB3L2 (ENSGALG00010013690)	DGKI (ENSGALG00010013757)	PTN (ENSGALG00010013828)	CHRM2 (ENSGALG00010013994)	MTPN (ENSGALG00010010690)	FAM180A (ENSGALG00010011034)	SLC13A4 (ENSGALG00010011042)	C7orf73 (ENSGALG00010010106)	SYT10 (ENSGALG00010011050)	PKP2 (ENSGALG00010011076)	YARS2 (ENSGALG00010011091)	DNM1L (ENSGALG00010011130)	FGD4 (ENSGALG00010011150)	BICD1 (ENSGALG00010015918)	ENSGALG00010011163
Japanese quail	MODERN SPECIES		ENSCJPG00005020289	KDM7A (ENSCJPG00005020287) #7	ENSCJPG00005020286	RAB19 (ENSCJPG00005020285) #10	ENSCJPG00005020284 #11	DENND2A (ENSCJPG00005020283) #12	ADCK2 (ENSCJPG00005020282) #13	ENSCJPG00005020281	NDUFB2 (ENSCJPG00005020280) #14	BRAF (ENSCJPG00005020278) #15	MRPS33 (ENSCJPG00005020274) #17	TMEM178B (ENSCJPG00005020271) #18	AGK (ENSCJPG00005020266) #19	DENND11 (ENSCJPG00005020264) #20	WEE2 (ENSCJPG00005020263) #21	SSBP1 (ENSCJPG00005020262) #22	CREB3L2 (ENSCJPG00005020261)	DGKI (ENSCJPG00005020258)	PTN (ENSCJPG00005020254)	CHRM2 (ENSCJPG00005020252)	MTPN (ENSCJPG00005020249)	FAM180A (ENSCJPG00005020248)	SLC13A4 (ENSCJPG00005020247)	STMP1 (ENSCJPG00005020246)	SYT10 (ENSCJPG00005020241)	PKP2 (ENSCJPG00005020239)	YARS2 (ENSCJPG00005020238)	DNM1L (ENSCJPG00005020236)	FGD4 (ENSCJPG00005020235)	BICD1 (ENSCJPG00005020234)	ENSCJPG00005020232
Anatidae	ANCESTRAL SPECIES	8	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000012348	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00940000154136.k.b.b.b.a.b.b.a	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b
Pink-footed goose	MODERN SPECIES	24	ENSABRG00000005418	KDM7A (ENSABRG00000005332) #7	SLC37A3 (ENSABRG00000005274) #9	RAB19 (ENSABRG00000005252) #10	ENSABRG00000005237 #11	DENND2A (ENSABRG00000004815) #12	ADCK2 (ENSABRG00000004766) #13	NDUFB2 (ENSABRG00000004762) #14	BRAF (ENSABRG00000003775) #15	MRPS33 (ENSABRG00000003738) #17	ENSABRG00000003734	TMEM178B (ENSABRG00000003726) #18	AGK (ENSABRG00000003698) #19	DENND11 (ENSABRG00000003684) #20	WEE2 (ENSABRG00000003623) #21	SSBP1 (ENSABRG00000003596) #22	CREB3L2 (ENSABRG00000003557)	DGKI (ENSABRG00000000869)	PTN (ENSABRG00000017354)	CHRM2 (ENSABRG00000017352)	ENSABRG00000017342	MTPN (ENSABRG00000017334)	FAM180A (ENSABRG00000017321)	SLC13A4 (ENSABRG00000017317)	STMP1 (ENSABRG00000017313)	ENSABRG00000017304	ENSABRG00000017297	PKP2 (ENSABRG00000017294)	YARS2 (ENSABRG00000017293)	DNM1L (ENSABRG00000017282)	FGD4 (ENSABRG00000017257)
Duck	MODERN SPECIES		SLC37A3 (ENSAPLG00000016319) #9	RAB19 (ENSAPLG00000016306) #10	ENSAPLG00000016256 #11	ENSAPLG00000016136	DENND2A (ENSAPLG00000015883) #12	ADCK2 (ENSAPLG00000015876) #13	ENSAPLG00000016818	NDUFB2 (ENSAPLG00000017148) #14	BRAF (ENSAPLG00000015187) #15	MRPS33 (ENSAPLG00000018693) #17	TMEM178B (ENSAPLG00000023717) #18	ENSAPLG00000024945	AGK (ENSAPLG00000014517) #19	DENND11 (ENSAPLG00000014033) #20	WEE2 (ENSAPLG00000013332) #21	SSBP1 (ENSAPLG00000013244) #22	CREB3L2 (ENSAPLG00000012813)	ENSAPLG00000012073	ENSAPLG00000019993	PTN (ENSAPLG00000011788)	CHRM2 (ENSAPLG00000021598)	MTPN (ENSAPLG00000031045)	FAM180A (ENSAPLG00000003787)	SLC13A4 (ENSAPLG00000003795)	ENSAPLG00000018318	SYT10 (ENSAPLG00000004558)	PKP2 (ENSAPLG00000004755)	YARS2 (ENSAPLG00000004982)	DNM1L (ENSAPLG00000005012)	ENSAPLG00000020687	FGD4 (ENSAPLG00000011676)
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Passeriformes	ANCESTRAL SPECIES	3	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT01100000264041.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Great tit	MODERN SPECIES	10	ITPR2 (ENSPMJG00000009161)	INTS13 (ENSPMJG00000009129)	FGFR1OP2 (ENSPMJG00000009128)	TM7SF3 (ENSPMJG00000009126)	MED21 (ENSPMJG00000009125)	STK38L (ENSPMJG00000009106)	BMAL2 (ENSPMJG00000009089)	REP15 (ENSPMJG00000009088)	PPFIBP1 (ENSPMJG00000009077)	CYB5R3 (ENSPMJG00000009034)	ENSPMJG00000009033	ENSPMJG00000009032 #18	AGK (ENSPMJG00000009029) #19	DENND11 (ENSPMJG00000009027) #20	WEE2 (ENSPMJG00000009025) #21	SSBP1 (ENSPMJG00000009024) #22	CREB3L2 (ENSPMJG00000009020)	DGKI (ENSPMJG00000009012)	PTN (ENSPMJG00000009011)	CHRM2 (ENSPMJG00000009002)	MTPN (ENSPMJG00000008993)	FAM180A (ENSPMJG00000008985)	SLC13A4 (ENSPMJG00000008983)	SYT10 (ENSPMJG00000008976)	ENSPMJG00000008975	PKP2 (ENSPMJG00000008974)	YARS2 (ENSPMJG00000008973)	DNM1L (ENSPMJG00000008972)	FGD4 (ENSPMJG00000008966)	BICD1 (ENSPMJG00000008964)	ENSPMJG00000008959
Passeriformes_d	ANCESTRAL SPECIES	3	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT01100000264041.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	10	B4GALNT3 (ENSFALG00000003918)	CCDC77 (ENSFALG00000003914)	KDM5A (ENSFALG00000003907)	SLC6A13 (ENSFALG00000003900)	ENSFALG00000003846	IQSEC3 (ENSFALG00000003830)	ENSFALG00000003803	ENSFALG00000003818	ENSFALG00000027563	ENSFALG00000003800	MRPS33 (ENSFALG00000028609) #17	TMEM178B (ENSFALG00000003797) #18	AGK (ENSFALG00000003794) #19	DENND11 (ENSFALG00000003784) #20	WEE2 (ENSFALG00000003781) #21	ENSFALG00000003767 #22	BRAF (ENSFALG00000003761) #15	NDUFB2 (ENSFALG00000003758) #14	ENSFALG00000003752	ADCK2 (ENSFALG00000003739) #13	DENND2A (ENSFALG00000003734) #12	ENSFALG00000003727	ENSFALG00000003717 #11	RAB19 (ENSFALG00000003709) #10	SLC37A3 (ENSFALG00000003695) #9	KDM7A (ENSFALG00000003684) #7	ENSFALG00000003681	ENSFALG00000003671	ENSFALG00000003668	ENSFALG00000025384	DYRK4 (ENSFALG00000001938)
Flycatcher	MODERN SPECIES	10	PHF21B (ENSFALG00000002785)	NUP50 (ENSFALG00000025491)	KIAA0930 (ENSFALG00000002797)	FAM118A (ENSFALG00000025745)	SMC1B (ENSFALG00000002808)	RIBC2 (ENSFALG00000002815)	FBLN1 (ENSFALG00000002830)	ATXN10 (ENSFALG00000002840)	WNT7B (ENSFALG00000002848)	ENSFALG00000025249	PPARA (ENSFALG00000002852)	ENSFALG00000015127	TTC38 (ENSFALG00000002854)	ENSFALG00000008102	ENSFALG00000022674	ENSFALG00000000509 #22	CREB3L2 (ENSFALG00000000511)	ENSFALG00000027579	ENSFALG00000000515	ENSFALG00000024058	PTN (ENSFALG00000000528)	CHRM2 (ENSFALG00000000530)	ENSFALG00000023174	MTPN (ENSFALG00000027900)	FAM180A (ENSFALG00000026214)	SLC13A4 (ENSFALG00000000544)	ENSFALG00000025701	FGD4 (ENSFALG00000009018)	ENSFALG00000009020	ENSFALG00000009023	ENSFALG00000023662
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT01100000264041.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Medium ground finch	MODERN SPECIES	117	KDM7A (ENSGFOG00000002467) #7	SLC37A3 (ENSGFOG00000002141) #9	RAB19 (ENSGFOG00000002113) #10	ENSGFOG00000002093 #11	ENSGFOG00000002049	DENND2A (ENSGFOG00000002024) #12	ADCK2 (ENSGFOG00000002010) #13	ENSGFOG00000002004	ENSGFOG00000001987 #15	ENSGFOG00000001977 #15	MRPS33 (ENSGFOG00000014792) #17	TMEM178B (ENSGFOG00000014791) #18	AGK (ENSGFOG00000014789) #19	DENND11 (ENSGFOG00000014788) #20	WEE2 (ENSGFOG00000014787) #21	SSBP1 (ENSGFOG00000014786) #22	CREB3L2 (ENSGFOG00000014784)	DGKI (ENSGFOG00000014778)
Passeroidea	ANCESTRAL SPECIES	3	ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT01100000264041.a	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Common canary	MODERN SPECIES	26	ENSSCAG00000009680	KDM7A (ENSSCAG00000009690) #7	SLC37A3 (ENSSCAG00000009707) #9	RAB19 (ENSSCAG00000009751) #10	ENSSCAG00000009754 #11	ENSSCAG00000009762	DENND2A (ENSSCAG00000009777) #12	ADCK2 (ENSSCAG00000009793) #13	NDUFB2 (ENSSCAG00000009816) #14	BRAF (ENSSCAG00000009820) #15	MRPS33 (ENSSCAG00000009824) #17	TMEM178B (ENSSCAG00000009826) #18	AGK (ENSSCAG00000009830) #19	DENND11 (ENSSCAG00000009835) #20	WEE2 (ENSSCAG00000009838) #21	SSBP1 (ENSSCAG00000009843) #22	ENSSCAG00000009847	CREB3L2 (ENSSCAG00000009853)	ENSSCAG00000009868	ENSSCAG00000009914	PTN (ENSSCAG00000009918)	CHRM2 (ENSSCAG00000009921)	MTPN (ENSSCAG00000009925)	FAM180A (ENSSCAG00000009930)	SLC13A4 (ENSSCAG00000009933)	SYT10 (ENSSCAG00000009941)	ENSSCAG00000009946	PKP2 (ENSSCAG00000009951)	YARS2 (ENSSCAG00000009963)	DNM1L (ENSSCAG00000009981)	FGD4 (ENSSCAG00000010013)
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000165307.d	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT01050000245630	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491	ENSGT00730000111305
Kakapo	MODERN SPECIES	20	ENSSHBG00005013071	KDM7A (ENSSHBG00005013004) #7	ENSSHBG00005012952	RAB19 (ENSSHBG00005012935) #10	ENSSHBG00005012917 #11	DENND2A (ENSSHBG00005012896) #12	ADCK2 (ENSSHBG00005012850) #13	ENSSHBG00005012823	NDUFB2 (ENSSHBG00005012798) #14	BRAF (ENSSHBG00005012383) #15	MRPS33 (ENSSHBG00005012281) #17	TMEM178B (ENSSHBG00005012267) #18	AGK (ENSSHBG00005012231) #19	DENND11 (ENSSHBG00005012213) #20	WEE2 (ENSSHBG00005012149) #21	SSBP1 (ENSSHBG00005011885) #22	CREB3L2 (ENSSHBG00005011766)	DGKI (ENSSHBG00005010562)	PTN (ENSSHBG00005010383)	CHRM2 (ENSSHBG00005010341)	MTPN (ENSSHBG00005010313)	FAM180A (ENSSHBG00005010288)	SLC13A4 (ENSSHBG00005010265)	SYT10 (ENSSHBG00005010225)	PKP2 (ENSSHBG00005010174)	YARS2 (ENSSHBG00005010145)	DNM1L (ENSSHBG00005010091)	FGD4 (ENSSHBG00005009953)	BICD1 (ENSSHBG00005009913)	ENSSHBG00005009885	AMN1 (ENSSHBG00005009870)
African ostrich	MODERN SPECIES	771	TRIM24 (ENSSCUG00000017713)	AKR1D1 (ENSSCUG00000017707)	ENSSCUG00000017705	KDM7A (ENSSCUG00000017704) #7	SLC37A3 (ENSSCUG00000017702) #9	RAB19 (ENSSCUG00000017701) #10	ENSSCUG00000017699 #11	ENSSCUG00000017694	DENND2A (ENSSCUG00000017693) #12	ENSSCUG00000017692	BRAF (ENSSCUG00000017689) #15	MRPS33 (ENSSCUG00000017685) #17	AGK (ENSSCUG00000017683) #19	DENND11 (ENSSCUG00000017682) #20	WEE2 (ENSSCUG00000017681) #21	SSBP1 (ENSSCUG00000017678) #22	CREB3L2 (ENSSCUG00000017675)	DGKI (ENSSCUG00000017670)	PTN (ENSSCUG00000017667)	CHRM2 (ENSSCUG00000017664)	MTPN (ENSSCUG00000017659)	FAM180A (ENSSCUG00000017657)	SLC13A4 (ENSSCUG00000017655)	SYT10 (ENSSCUG00000017653)	PKP2 (ENSSCUG00000017652)	ENSSCUG00000017650	DNM1L (ENSSCUG00000017647)	FGD4 (ENSSCUG00000017645)	BICD1 (ENSSCUG00000017643)	ENSSCUG00000017642	AMN1 (ENSSCUG00000017640)
Australian saltwater crocodile	MODERN SPECIES	49	ENSCPRG00005018007	KDM7A (ENSCPRG00005017999) #7	ENSCPRG00005017995	RAB19 (ENSCPRG00005017994) #10	ENSCPRG00005017990 #11	DENND2A (ENSCPRG00005017981) #12	ADCK2 (ENSCPRG00005017976) #13	ENSCPRG00005017974	NDUFB2 (ENSCPRG00005017962) #14	BRAF (ENSCPRG00005017954) #15	MRPS33 (ENSCPRG00005017949) #17	TMEM178B (ENSCPRG00005017944) #18	AGK (ENSCPRG00005017939) #19	DENND11 (ENSCPRG00005017935) #20	WEE2 (ENSCPRG00005017929) #21	SSBP1 (ENSCPRG00005017927) #22	CREB3L2 (ENSCPRG00005017921)	DGKI (ENSCPRG00005017914)	PTN (ENSCPRG00005017909)	CHRM2 (ENSCPRG00005017908)	MTPN (ENSCPRG00005017899)	FAM180A (ENSCPRG00005017893)	SLC13A4 (ENSCPRG00005017885)	SYT10 (ENSCPRG00005017878)	ENSCPRG00005017874	ENSCPRG00005017869	PKP2 (ENSCPRG00005017861)	ENSCPRG00005017850	YARS2 (ENSCPRG00005017845)	DNM1L (ENSCPRG00005017783)	FGD4 (ENSCPRG00005017740)
Cryptodira	ANCESTRAL SPECIES	10	ENSGT00940000165307.c	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b
Chinese turtle	MODERN SPECIES	1880	ENSPSIG00000010662	KDM7A (ENSPSIG00000010327) #7	SLC37A3 (ENSPSIG00000009128) #9	RAB19 (ENSPSIG00000009123) #10	ENSPSIG00000008369 #11	ENSPSIG00000008349	DENND2A (ENSPSIG00000007670) #12	ADCK2 (ENSPSIG00000007607) #13	BRAF (ENSPSIG00000011427) #15	ENSPSIG00000001875	MRPS33 (ENSPSIG00000011413) #17	TMEM178B (ENSPSIG00000011409) #18	ENSPSIG00000011391 #18	AGK (ENSPSIG00000008673) #19	DENND11 (ENSPSIG00000008006) #20	SSBP1 (ENSPSIG00000007756) #22	CREB3L2 (ENSPSIG00000006461)	DGKI (ENSPSIG00000005205)	PTN (ENSPSIG00000005039)	CHRM2 (ENSPSIG00000004996)	ENSPSIG00000001873
Testudinoidea	ANCESTRAL SPECIES	4	ENSGT00940000165307.c	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.k #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b
Testudinidae	ANCESTRAL SPECIES	14	ENSGT00940000165307.d	ENSGT00940000165307.c	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.k #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b
Abingdon island giant tortoise	MODERN SPECIES	929	KDM7A (ENSCABG00000022196) #7	ENSCABG00000022197	ENSCABG00000022198	RAB19 (ENSCABG00000022199) #10	ENSCABG00000022213 #11	DENND2A (ENSCABG00000022217) #12	ADCK2 (ENSCABG00000022219) #13	ENSCABG00000022221 #14	BRAF (ENSCABG00000022223) #15	MRPS33 (ENSCABG00000022225) #17	TMEM178B (ENSCABG00000022226) #18	ENSCABG00000022230 #18	AGK (ENSCABG00000022232) #19	DENND11 (ENSCABG00000000072) #20	WEE2 (ENSCABG00000000152) #21	SSBP1 (ENSCABG00000000210) #22	ENSCABG00000000243	DGKI (ENSCABG00000000404)	ENSCABG00000000868	PTN (ENSCABG00000000869)	CHRM2 (ENSCABG00000000873)
Goode s thornscrub tortoise	MODERN SPECIES		KDM7A (ENSGEVG00005009590) #7	ENSGEVG00005009537	RAB19 (ENSGEVG00005009493) #10	ENSGEVG00005009419 #11	DENND2A (ENSGEVG00005009172) #12	ADCK2 (ENSGEVG00005009085) #13	ENSGEVG00005009033	NDUFB2 (ENSGEVG00005008991) #14	BRAF (ENSGEVG00005008906) #15	MRPS33 (ENSGEVG00005008859) #17	TMEM178B (ENSGEVG00005008814) #18	ENSGEVG00005008785 #18	AGK (ENSGEVG00005008746) #19	DENND11 (ENSGEVG00005008685) #20	WEE2 (ENSGEVG00005020080) #21	SSBP1 (ENSGEVG00005020064) #22	ENSGEVG00005020046	ENSGEVG00005020039	DGKI (ENSGEVG00005019959)	PTN (ENSGEVG00005019932)	CHRM2 (ENSGEVG00005019927)	MTPN (ENSGEVG00005019924)	FAM180A (ENSGEVG00005019917)	SLC13A4 (ENSGEVG00005019909)	STMP1 (ENSGEVG00005019901)	SYT10 (ENSGEVG00005019891)	PKP2 (ENSGEVG00005019875)	YARS2 (ENSGEVG00005019867)	DNM1L (ENSGEVG00005019845)	ENSGEVG00005019832	ENSGEVG00005019827
Emydidae	ANCESTRAL SPECIES	5	ENSGT00940000165307.c	ENSGT00940000158039 #7	ENSGT00940000163139	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044.k #14	ENSGT00940000156154 #15	ENSGT00390000011401.a #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Three-toed box turtle	MODERN SPECIES	118	ENSTMTG00000020978	ENSTMTG00000021003	KDM7A (ENSTMTG00000021038) #7	ENSTMTG00000021046	RAB19 (ENSTMTG00000021071) #10	ENSTMTG00000021160 #11	DENND2A (ENSTMTG00000021170) #12	ADCK2 (ENSTMTG00000021204) #13	ENSTMTG00000021230 #14	BRAF (ENSTMTG00000021261) #15	MRPS33 (ENSTMTG00000021462) #17	TMEM178B (ENSTMTG00000021466) #18	AGK (ENSTMTG00000021483) #19	DENND11 (ENSTMTG00000021527) #20	WEE2 (ENSTMTG00000021535) #21	SSBP1 (ENSTMTG00000021544) #22	CREB3L2 (ENSTMTG00000021553)	DGKI (ENSTMTG00000021578)	PTN (ENSTMTG00000021755)	CHRM2 (ENSTMTG00000021762)	MTPN (ENSTMTG00000021764)	FAM180A (ENSTMTG00000021768)	SLC13A4 (ENSTMTG00000003255)	SYT10 (ENSTMTG00000003286)	PKP2 (ENSTMTG00000003317)	ENSTMTG00000003339	YARS2 (ENSTMTG00000003380)	DNM1L (ENSTMTG00000003416)	FGD4 (ENSTMTG00000003532)	ENSTMTG00000003899	BICD1 (ENSTMTG00000003918)
painted turtle	MODERN SPECIES	759	ENSCPBG00000011919	RAB19 (ENSCPBG00000011914) #10	ENSCPBG00000011911 #11	ENSCPBG00000011907	DENND2A (ENSCPBG00000011891) #12	ADCK2 (ENSCPBG00000011871) #13	ENSCPBG00000011850	ENSCPBG00000011814 #14	ENSCPBG00000011806	BRAF (ENSCPBG00000011794) #15	ENSCPBG00000011784 #17	TMEM178B (ENSCPBG00000011771) #18	AGK (ENSCPBG00000011764) #19	DENND11 (ENSCPBG00000011756) #20	WEE2 (ENSCPBG00000011436) #21	SSBP1 (ENSCPBG00000011435) #22	CREB3L2 (ENSCPBG00000011432)	DGKI (ENSCPBG00000011429)	PTN (ENSCPBG00000011427)	CHRM2 (ENSCPBG00000011425)	MTPN (ENSCPBG00000011423)	FAM180A (ENSCPBG00000011422)	SLC13A4 (ENSCPBG00000011420)
Lepidosauria	ANCESTRAL SPECIES	3	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000155765	ENSGT00950000185349	ENSGT00940000154471.a.b.a.b
tuatara	MODERN SPECIES	11	ENSSPUG00000003952	ENSSPUG00000003965 #7	ENSSPUG00000003977 #7	ENSSPUG00000003997	RAB19 (ENSSPUG00000004019) #10	ENSSPUG00000004045 #11	ENSSPUG00000004065	DENND2A (ENSSPUG00000004116) #12	NDUFB2 (ENSSPUG00000004211) #14	BRAF (ENSSPUG00000004226) #15	MRPS33 (ENSSPUG00000004275) #17	TMEM178B (ENSSPUG00000004311) #18	AGK (ENSSPUG00000004322) #19	DENND11 (ENSSPUG00000004337) #20	WEE2 (ENSSPUG00000004377) #21	SSBP1 (ENSSPUG00000004501) #22	CREB3L2 (ENSSPUG00000004512)	DGKI (ENSSPUG00000004569)	PTN (ENSSPUG00000004749)	ENSSPUG00000004763	ENSSPUG00000004772
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00940000154136	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000153173.b.b	ENSGT00940000155765
Toxicofera	ANCESTRAL SPECIES	7	ENSGT00940000158039 #7	ENSGT00940000163296 #9	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00390000007427	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000153173.b.b	ENSGT00940000155765	ENSGT00950000185349
Elapidae	ANCESTRAL SPECIES	6	ENSGT00940000165307.c	ENSGT00940000158039.c #7	ENSGT00940000165554	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000153173.b.b	ENSGT00940000155765	ENSGT00950000185349
Elapidae_a	ANCESTRAL SPECIES	1	ENSGT00940000165307.c	ENSGT00940000158039.c #7	ENSGT00940000165554	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000153173.b.b	ENSGT00940000155765	ENSGT00950000185349
Acanthophiinae	ANCESTRAL SPECIES		ENSGT00940000165307.c	ENSGT00940000158039.c #7	ENSGT00940000165554	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00950000182931.B.a.a #12	ENSGT00940000177916	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00550000076278	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000153173.b.b	ENSGT00940000155765	ENSGT00950000185349
Mainland tiger snake	MODERN SPECIES	6	ENSNSUG00000013601	KDM7A (ENSNSUG00000013609) #7	RAB19 (ENSNSUG00000013618) #10	ENSNSUG00000013670 #11	DENND2A (ENSNSUG00000013674) #12	ENSNSUG00000013676	ADCK2 (ENSNSUG00000013679) #13	NDUFB2 (ENSNSUG00000013683) #14	BRAF (ENSNSUG00000013684) #15	MRPS33 (ENSNSUG00000013689) #17	TMEM178B (ENSNSUG00000013690) #18	ENSNSUG00000013692 #18	AGK (ENSNSUG00000013693) #19	DENND11 (ENSNSUG00000013695) #20	WEE2 (ENSNSUG00000013696) #21	SSBP1 (ENSNSUG00000013697) #22	CREB3L2 (ENSNSUG00000013698)	DGKI (ENSNSUG00000013708)	PTN (ENSNSUG00000013712)	CHRM2 (ENSNSUG00000013715)	MTPN (ENSNSUG00000013717)	FAM180A (ENSNSUG00000013718)	SLC13A4 (ENSNSUG00000013719)	ENSNSUG00000013720	SYT10 (ENSNSUG00000013721)	PKP2 (ENSNSUG00000013723)	YARS2 (ENSNSUG00000013730)	DNM1L (ENSNSUG00000013735)	DHX58 (ENSNSUG00000013844)	ENSNSUG00000013877	ENSNSUG00000013878
Eastern brown snake	MODERN SPECIES		AKR1D1 (ENSPTXG00000007371)	ENSPTXG00000007370	ENSPTXG00000007369	KDM7A (ENSPTXG00000007367) #7	ENSPTXG00000007366	RAB19 (ENSPTXG00000007365) #10	ENSPTXG00000007364 #11	DENND2A (ENSPTXG00000007363) #12	ADCK2 (ENSPTXG00000007362) #13	NDUFB2 (ENSPTXG00000007361) #14	BRAF (ENSPTXG00000007167) #15	TMEM178B (ENSPTXG00000007164) #18	AGK (ENSPTXG00000007163) #19	DENND11 (ENSPTXG00000007161) #20	WEE2 (ENSPTXG00000007160) #21	SSBP1 (ENSPTXG00000007159) #22	CREB3L2 (ENSPTXG00000007157)	DGKI (ENSPTXG00000007126)	PTN (ENSPTXG00000007119)	CHRM2 (ENSPTXG00000007117)	MTPN (ENSPTXG00000007115)	FAM180A (ENSPTXG00000007112)	SLC13A4 (ENSPTXG00000007111)	STMP1 (ENSPTXG00000007110)	SYT10 (ENSPTXG00000007108)	PKP2 (ENSPTXG00000007102)	YARS2 (ENSPTXG00000007101)	DNM1L (ENSPTXG00000007100)	DHX58 (ENSPTXG00000007099)	FGD4 (ENSPTXG00000007098)	ENSPTXG00000007097
Blue-lipped sea krait	MODERN SPECIES	1509															WEE2 (ENSLLTG00000002019) #21	SSBP1 (ENSLLTG00000002011) #22
Indian cobra	MODERN SPECIES	6	ENSNNAG00000017152 #7	ENSNNAG00000017156 #7	ENSNNAG00000017165	RAB19 (ENSNNAG00000017175) #10	ENSNNAG00000017195 #11	DENND2A (ENSNNAG00000017215) #12	ADCK2 (ENSNNAG00000017249) #13	NDUFB2 (ENSNNAG00000007603) #14	BRAF (ENSNNAG00000007678) #15	MRPS33 (ENSNNAG00000008535) #17	TMEM178B (ENSNNAG00000008555) #18	ENSNNAG00000008581 #18	AGK (ENSNNAG00000008638) #19	DENND11 (ENSNNAG00000008688) #20	WEE2 (ENSNNAG00000008761) #21	SSBP1 (ENSNNAG00000008797) #22	CREB3L2 (ENSNNAG00000008822)	DGKI (ENSNNAG00000009003)	PTN (ENSNNAG00000010616)	CHRM2 (ENSNNAG00000010624)	MTPN (ENSNNAG00000010646)	FAM180A (ENSNNAG00000010668)	SLC13A4 (ENSNNAG00000010736)	STMP1 (ENSNNAG00000011661)	SYT10 (ENSNNAG00000011685)	PKP2 (ENSNNAG00000011757)	YARS2 (ENSNNAG00000011860)	DNM1L (ENSNNAG00000011898)	DHX58 (ENSNNAG00000012010)	ENSNNAG00000012055	ENSNNAG00000012079
Lizard	MODERN SPECIES	4	RAB19 (ENSACAG00000040946) #10	ENSACAG00000043454	ENSACAG00000010934 #11	ENSACAG00000029506	DENND2A (ENSACAG00000011024) #12	ADCK2 (ENSACAG00000011163) #13	BRAF (ENSACAG00000011178) #15	ENSACAG00000037471 #14	MRPS33 (ENSACAG00000035383) #17	TMEM178B (ENSACAG00000011370) #18	ENSACAG00000035648 #18	AGK (ENSACAG00000011373) #19	DENND11 (ENSACAG00000011486) #20	ENSACAG00000036864	WEE2 (ENSACAG00000011522) #21	SSBP1 (ENSACAG00000011577) #22	ENSACAG00000035765	ENSACAG00000011643	ENSACAG00000023856	ENSACAG00000016985	ENSACAG00000034835	HIPK2 (ENSACAG00000016940)	ENSACAG00000016841	PARP12 (ENSACAG00000016815)	SPIC (ENSACAG00000040343)	MYBPC1 (ENSACAG00000016657)	CHPT1 (ENSACAG00000016640)	GNPTAB (ENSACAG00000016592)	ENSACAG00000042759	DRAM1 (ENSACAG00000016578)	WASHC3 (ENSACAG00000040073)
Laterata	ANCESTRAL SPECIES	6	ENSGT00940000165307.d	ENSGT00940000165307.c	ENSGT00940000158039 #7	ENSGT00940000165554	ENSGT00940000156717 #10	ENSGT00950000183077.a.a #11	ENSGT00950000182931.B.a.a #12	ENSGT00390000001536 #13	ENSGT00390000004044 #14	ENSGT00940000156154 #15	ENSGT00390000011401 #17	ENSGT00390000015299.a.b.b.a #18	ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00940000158899	ENSGT00940000158677	ENSGT00390000013709.b	ENSGT00940000155504	ENSGT00940000153173.b.b	ENSGT00940000155765	ENSGT00940000154471.a.b.a.b	ENSGT00390000018491
Argentine black and white tegu	MODERN SPECIES	6	KDM7A (ENSSMRG00000015999) #7	ENSSMRG00000016000	RAB19 (ENSSMRG00000016001) #10	ENSSMRG00000016002 #11	DENND2A (ENSSMRG00000016004) #12	ADCK2 (ENSSMRG00000016005) #13	ENSSMRG00000016006	NDUFB2 (ENSSMRG00000016007) #14	BRAF (ENSSMRG00000016008) #15	MRPS33 (ENSSMRG00000016009) #17	TMEM178B (ENSSMRG00000016011) #18	ENSSMRG00000016013 #18	AGK (ENSSMRG00000016014) #19	DENND11 (ENSSMRG00000016015) #20	WEE2 (ENSSMRG00000016016) #21	SSBP1 (ENSSMRG00000016017) #22	CREB3L2 (ENSSMRG00000016018)	DGKI (ENSSMRG00000016019)	ENSSMRG00000016152	PTN (ENSSMRG00000016153)	CHRM2 (ENSSMRG00000016154)	ENSSMRG00000016157	MTPN (ENSSMRG00000016160)	ENSSMRG00000016161	FAM180A (ENSSMRG00000016165)	ENSSMRG00000016167	SYT10 (ENSSMRG00000016169)	PKP2 (ENSSMRG00000016175)	YARS2 (ENSSMRG00000016177)	DNM1L (ENSSMRG00000016178)	DHX58 (ENSSMRG00000016180)
Common wall lizard	MODERN SPECIES	1	ENSPMRG00000012968 #11	ENSPMRG00000012983	ADCK2 (ENSPMRG00000012996) #13	ENSPMRG00000013000	ENSPMRG00000013004 #14	BRAF (ENSPMRG00000013063) #15	MRPS33 (ENSPMRG00000013489) #17	TMEM178B (ENSPMRG00000013493) #18	ENSPMRG00000013496	ENSPMRG00000013504 #18	AGK (ENSPMRG00000013522) #19	ENSPMRG00000013560	DENND11 (ENSPMRG00000013566) #20	ENSPMRG00000013577	WEE2 (ENSPMRG00000013583) #21	SSBP1 (ENSPMRG00000013598) #22	CREB3L2 (ENSPMRG00000013611)	DGKI (ENSPMRG00000013632)	PTN (ENSPMRG00000013694)	CHRM2 (ENSPMRG00000013704)	MTPN (ENSPMRG00000013709)	FAM180A (ENSPMRG00000013716)	SLC13A4 (ENSPMRG00000013726)	SYT10 (ENSPMRG00000013739)	ENSPMRG00000013750	ENSPMRG00000013759	ENSPMRG00000013764	ENSPMRG00000013771	PKP2 (ENSPMRG00000013777)	YARS2 (ENSPMRG00000013783)	DNM1L (ENSPMRG00000013796)
Anura	ANCESTRAL SPECIES	145													ENSGT00940000154961 #19	ENSGT00590000083189 #20	ENSGT00940000158803 #21	ENSGT00390000002796 #22	ENSGT00940000157659	ENSGT00940000158094	ENSGT00390000007640.a	ENSGT00940000158940	ENSGT00430000031071	ENSGT00940000154479.b	ENSGT01030000234550.a.a.d.a.b	ENSGT00390000004003	ENSGT00390000000068	ENSGT01030000235645	ENSGT00950000182953.B.a	ENSGT00390000017181	ENSGT00390000001566	ENSGT01010000229625	ENSGT00940000160916
Frog	MODERN SPECIES	3	rab19 (ENSXETG00000002673) #10	mkrn1 (ENSXETG00000027117) #11	ENSXETG00000037869	dennd2a (ENSXETG00000049354) #12	adck2 (ENSXETG00000031357) #13	ENSXETG00000005438	ndufb2 (ENSXETG00000002668) #14	ENSXETG00000031320	hars2 (ENSXETG00000002665)	braf (ENSXETG00000004845) #15	tmem178b (ENSXETG00000039625) #18	ENSXETG00000037587	agk (ENSXETG00000047267) #19	DENND11 (ENSXETG00000048620) #20	wee2 (ENSXETG00000031988) #21	ssbp1 (ENSXETG00000020197) #22	CREB3L2 (ENSXETG00000033093)	dgki (ENSXETG00000021398)	ptn (ENSXETG00000032857)	chrm2 (ENSXETG00000049444)	ENSXETG00000035762	ENSXETG00000045305	mtpn (ENSXETG00000042873)	FAM180A (ENSXETG00000010609)	slc13a4 (ENSXETG00000010608)	nup205 (ENSXETG00000010597)	cnot4 (ENSXETG00000010594)	ENSXETG00000042282	ENSXETG00000020228	stra8 (ENSXETG00000020235)	wdr91 (ENSXETG00000020237)
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000017792	ENSLLEG00000017761	ENSLLEG00000017727	ENSLLEG00000017256	ENSLLEG00000017192	ENSLLEG00000017173	ENSLLEG00000017158	ENSLLEG00000017142	ENSLLEG00000017132	GABRG2 (ENSLLEG00000016578)	AGK (ENSLLEG00000016439) #19	ENSLLEG00000016410	ENSLLEG00000016390	ENSLLEG00000016366	DENND11 (ENSLLEG00000016230) #20	SSBP1 (ENSLLEG00000016098) #22	ENSLLEG00000016003	ENSLLEG00000015836	ENSLLEG00000015819	ENSLLEG00000015633	ETV6 (ENSLLEG00000015500)	ENSLLEG00000015350	ENSLLEG00000015245	ENSLLEG00000015217	LRP6 (ENSLLEG00000014565)	ENSLLEG00000014492	ENSLLEG00000014469	ENSLLEG00000014398	ENSLLEG00000014351	BORCS5 (ENSLLEG00000024978)	DUSP16 (ENSLLEG00000024823)