Gnathostomata	ANCESTRAL SPECIES	462														ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516 #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000166120
Euteleostomi	ANCESTRAL SPECIES	258							ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT01050000244824.D.a.a	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000166120
Sarcopterygii	ANCESTRAL SPECIES	283							ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT01050000244824.D.a.a	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319
Tetrapoda	ANCESTRAL SPECIES	40	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT01050000244824.D.a.a	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00940000154136	ENSGT00940000164262	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Amniota	ANCESTRAL SPECIES	7	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00940000154136	ENSGT00940000164262	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00960000190657
Theria	ANCESTRAL SPECIES		ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677 #31	ENSGT00940000153255.b.a #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b	ENSGT01050000244815.B.a.b.a	ENSGT01090000260044.A.b.b.c.b ##37	ENSGT01100000263477.B.c.a	ENSGT01100000263477.B.d
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a	ENSGT01050000244815.B.a.b.a
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162364 #17	ENSGT00940000162942	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Glires	ANCESTRAL SPECIES	18	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Rodentia	ANCESTRAL SPECIES	12	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Muroidea	ANCESTRAL SPECIES	8	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.c #28	ENSGT00940000153255.a.d #30	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37
Rat	MODERN SPECIES	14	Lrrc61 (ENSRNOG00000008234) #7	Atp6v0e2 (ENSRNOG00000008218) #8	Zfp862 (ENSRNOG00000066193) #9	Sspo (ENSRNOG00000025848) #10	Zfp467 (ENSRNOG00000007707) #11	Krba1 (ENSRNOG00000007405) #12	ENSRNOG00000066572 #13	Zfp746 (ENSRNOG00000007064) #14	Zfp777 (ENSRNOG00000033639) #15	Zfp956 (ENSRNOG00000026874) #16	Zfp212 (ENSRNOG00000006711) #17	Zfp282 (ENSRNOG00000026981) #18	Zfp398 (ENSRNOG00000006703) #19	Zfp786 (ENSRNOG00000006925) #20	Pdia4 (ENSRNOG00000006228) #21	Ezh2 (ENSRNOG00000006048) #22	Cul1 (ENSRNOG00000005310) #23	Cntnap2 (ENSRNOG00000006617) #24	Tpk1 (ENSRNOG00000029922) #25	Nobox (ENSRNOG00000025720) #26	Arhgef5 (ENSRNOG00000005506) #27	Or2a57 (ENSRNOG00000070876) #28	Or2a20 (ENSRNOG00000063432) #29	Or2a51 (ENSRNOG00000062852) #30	Or2a7 (ENSRNOG00000065711) #31	Or2a52 (ENSRNOG00000057924) #32	Or2a14 (ENSRNOG00000066559) #33	Or2a25 (ENSRNOG00000005412) #34	Or2a5 (ENSRNOG00000067628) #35	Or6b1 (ENSRNOG00000065813) #36	Or2q1 (ENSRNOG00000070849) #37
Mus	ANCESTRAL SPECIES	20	ENSGT00860000135995	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.c.c #28	ENSGT00940000153255.a.c.d #28	ENSGT00940000153255.a.d #30	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a.l.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Mus_A	ANCESTRAL SPECIES	7	ENSGT00860000135995	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.c.c.a #28	ENSGT00940000153255.a.c.d #28	ENSGT00940000153255.a.d #30	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a.l.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Mus_B	ANCESTRAL SPECIES	20	ENSGT00860000135995	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.c.c.a #28	ENSGT00940000153255.a.c.d #28	ENSGT00940000153255.a.d #30	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a.l.b.a #33	ENSGT00940000153255.b.a.a.a.l.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
Mouse	MODERN SPECIES	15	Gm45021 (ENSMUSG00000107588)	Rarres2 (ENSMUSG00000009281)	Lrrc61 (ENSMUSG00000073096) #7	Atp6v0e2 (ENSMUSG00000039347) #8	Sspo (ENSMUSG00000029797) #10	Zfp467 (ENSMUSG00000068551) #11	Krba1 (ENSMUSG00000042810) #12	Zfp746 (ENSMUSG00000057691) #14	Zfp777 (ENSMUSG00000071477) #15	Zfp956 (ENSMUSG00000045466) #16	Zfp212 (ENSMUSG00000052763) #17	Zfp282 (ENSMUSG00000025821) #18	Zfp398 (ENSMUSG00000062519) #19	Zfp786 (ENSMUSG00000051499) #20	Pdia4 (ENSMUSG00000025823) #21	Ezh2 (ENSMUSG00000029687) #22	Cul1 (ENSMUSG00000029686) #23	Cntnap2 (ENSMUSG00000039419) #24	Tpk1 (ENSMUSG00000029735) #25	Nobox (ENSMUSG00000029736) #26	Arhgef5 (ENSMUSG00000033542) #27	Or2a57 (ENSMUSG00000061210) #28	Or2a20 (ENSMUSG00000059411) #28	Or2a51 (ENSMUSG00000048693) #30	Or2a7 (ENSMUSG00000043605) #31	Or2a52 (ENSMUSG00000071481) #32	Or2a14 (ENSMUSG00000094200) #33	Or2a54 (ENSMUSG00000094669) #33	Gm20730 (ENSMUSG00000076500)	Gm17472 (ENSMUSG00000091008)	Or2a56 (ENSMUSG00000073110) #33
Mus_C	ANCESTRAL SPECIES	19	ENSGT00860000135995	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.c.c.a #28	ENSGT00940000153255.a.c.d #28	ENSGT00940000153255.a.d #30	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a.l.b.a #33	ENSGT00940000153255.b.a.a.a.l.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
spretus	MODERN SPECIES	15	MGP_SPRETEiJ_G0029344	Rarres2 (MGP_SPRETEiJ_G0029343)	Lrrc61 (MGP_SPRETEiJ_G0029342) #7	MGP_SPRETEiJ_G0029341 #8	Sspo (MGP_SPRETEiJ_G0029340) #10	Zfp467 (MGP_SPRETEiJ_G0029339) #11	Krba1 (MGP_SPRETEiJ_G0029338) #12	Zfp746 (MGP_SPRETEiJ_G0029337) #14	Zfp777 (MGP_SPRETEiJ_G0029336) #15	Zfp956 (MGP_SPRETEiJ_G0029335) #16	Zfp212 (MGP_SPRETEiJ_G0029334) #17	Zfp282 (MGP_SPRETEiJ_G0029333) #18	Zfp398 (MGP_SPRETEiJ_G0029332) #19	Zfp786 (MGP_SPRETEiJ_G0029331) #20	Pdia4 (MGP_SPRETEiJ_G0029330) #21	Ezh2 (MGP_SPRETEiJ_G0029329) #22	Cul1 (MGP_SPRETEiJ_G0029328) #23	Tpk1 (MGP_SPRETEiJ_G0029326) #25	Nobox (MGP_SPRETEiJ_G0029325) #26	Arhgef5 (MGP_SPRETEiJ_G0029324) #27	MGP_SPRETEiJ_G0029323 #28	MGP_SPRETEiJ_G0029322 #28	Or2a51 (MGP_SPRETEiJ_G0029321) #30	MGP_SPRETEiJ_G0029320 #31	Or2a52 (MGP_SPRETEiJ_G0029319) #32	MGP_SPRETEiJ_G0029318 #33	MGP_SPRETEiJ_G0029317 #33	MGP_SPRETEiJ_G0029316 #33	Or2a12 (MGP_SPRETEiJ_G0029315) ##28	Or2a25 (MGP_SPRETEiJ_G0029314) #34	Or2a5 (MGP_SPRETEiJ_G0029313) #35
Steppe mouse	MODERN SPECIES	2253																ENSMSIG00000009759 #22	Cul1 (ENSMSIG00000011292) #23	ENSMSIG00000011348
Ryukyu mouse	MODERN SPECIES	15	MGP_CAROLIEiJ_G0028341	Rarres2 (MGP_CAROLIEiJ_G0028340)	Lrrc61 (MGP_CAROLIEiJ_G0028339) #7	MGP_CAROLIEiJ_G0028338 #8	Sspo (MGP_CAROLIEiJ_G0028336) #10	Zfp467 (MGP_CAROLIEiJ_G0028335) #11	Krba1 (MGP_CAROLIEiJ_G0028334) #12	Zfp746 (MGP_CAROLIEiJ_G0028333) #14	Zfp777 (MGP_CAROLIEiJ_G0028332) #15	Zfp956 (MGP_CAROLIEiJ_G0028331) #16	Zfp212 (MGP_CAROLIEiJ_G0028330) #17	Zfp282 (MGP_CAROLIEiJ_G0028329) #18	Zfp398 (MGP_CAROLIEiJ_G0028328) #19	Zfp786 (MGP_CAROLIEiJ_G0028327) #20	Pdia4 (MGP_CAROLIEiJ_G0028326) #21	Ezh2 (MGP_CAROLIEiJ_G0028325) #22	Cul1 (MGP_CAROLIEiJ_G0028324) #23	MGP_CAROLIEiJ_G0028323	Tpk1 (MGP_CAROLIEiJ_G0028322) #25	Nobox (MGP_CAROLIEiJ_G0028321) #26	Arhgef5 (MGP_CAROLIEiJ_G0028320) #27	Or2a57 (MGP_CAROLIEiJ_G0028319) #28	MGP_CAROLIEiJ_G0028318 #28	Or2a51 (MGP_CAROLIEiJ_G0028317) #30	Or2a7 (MGP_CAROLIEiJ_G0028316) #31	Or2a52 (MGP_CAROLIEiJ_G0028315) #32	MGP_CAROLIEiJ_G0028314 #33	MGP_CAROLIEiJ_G0028313 #33	MGP_CAROLIEiJ_G0028312 #33	Or2a12 (MGP_CAROLIEiJ_G0028311) ##28	Or2a25 (MGP_CAROLIEiJ_G0028310) #34
Shrew mouse	MODERN SPECIES	11	Repin1 (MGP_PahariEiJ_G0022097)	Rarres2 (MGP_PahariEiJ_G0022096)	Lrrc61 (MGP_PahariEiJ_G0022095) #7	MGP_PahariEiJ_G0022094 #8	MGP_PahariEiJ_G0022093 #10	Zfp467 (MGP_PahariEiJ_G0022092) #11	Krba1 (MGP_PahariEiJ_G0022091) #12	Zfp746 (MGP_PahariEiJ_G0022090) #14	Zfp777 (MGP_PahariEiJ_G0022089) #15	Zfp956 (MGP_PahariEiJ_G0022088) #16	Zfp212 (MGP_PahariEiJ_G0022087) #17	Zfp282 (MGP_PahariEiJ_G0022086) #18	Zfp398 (MGP_PahariEiJ_G0022085) #19	Zfp786 (MGP_PahariEiJ_G0022084) #20	Pdia4 (MGP_PahariEiJ_G0022083) #21	Ezh2 (MGP_PahariEiJ_G0022082) #22	Cul1 (MGP_PahariEiJ_G0022081) #23	MGP_PahariEiJ_G0022080	Tpk1 (MGP_PahariEiJ_G0022079) #25	Nobox (MGP_PahariEiJ_G0022078) #26	Arhgef5 (MGP_PahariEiJ_G0022077) #27	Or2a57 (MGP_PahariEiJ_G0022076) #28	Or2a20 (MGP_PahariEiJ_G0022075) #28	Or2a51 (MGP_PahariEiJ_G0022074) #30	Or2a7 (MGP_PahariEiJ_G0022073) #31	Or2a52 (MGP_PahariEiJ_G0022072) #32	MGP_PahariEiJ_G0022071 #33	MGP_PahariEiJ_G0022070 #33	MGP_PahariEiJ_G0022069 #33	Or2a12 (MGP_PahariEiJ_G0022068) ##28	Or2a25 (MGP_PahariEiJ_G0022067) #34
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.f #28	ENSGT00940000153255.a.e #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.f #28	ENSGT00940000153255.a.e #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.d.c.b ##37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	223															ENSMOCG00000008643	ENSMOCG00000019854 #22	Cul1 (ENSMOCG00000014278) #23
Prairie vole	MODERN SPECIES	6	Ranbp3l (ENSMOCG00000018661)	Slc1a3 (ENSMOCG00000000262)	Nipbl (ENSMOCG00000000456)	ENSMOCG00000018878	Cplane1 (ENSMOCG00000004713)	Nup155 (ENSMOCG00000014018)	Wdr70 (ENSMOCG00000000693)	Gdnf (ENSMOCG00000016819)	Egflam (ENSMOCG00000016024)	Lifr (ENSMOCG00000021812)	Osmr (ENSMOCG00000017794)	Rictor (ENSMOCG00000018257)	Fyb (ENSMOCG00000000549)	C9 (ENSMOCG00000018405)	ENSMOCG00000022736	ENSMOCG00000000823 #22	Ptger4 (ENSMOCG00000017627)	Ttc33 (ENSMOCG00000016527)	Prkaa1 (ENSMOCG00000004966)	Rpl37 (ENSMOCG00000003835)	Card6 (ENSMOCG00000000830)	C7 (ENSMOCG00000020383)	Mroh2b (ENSMOCG00000006405)	ENSMOCG00000008608	C6 (ENSMOCG00000015087)	Plcxd3 (ENSMOCG00000003641)	Oxct1 (ENSMOCG00000020647)	Rimoc1 (ENSMOCG00000017689)	Fbxo4 (ENSMOCG00000019324)	Erap1 (ENSMOCG00000015368)	Cast (ENSMOCG00000001071)
Northern American deer mouse	MODERN SPECIES	16	ENSPEMG00000027502 #8	ENSPEMG00000025392 #9	Sspo (ENSPEMG00000011168) #10	Zfp467 (ENSPEMG00000018389) #11	Krba1 (ENSPEMG00000014012) #12	ENSPEMG00000026644	Zfp746 (ENSPEMG00000015037) #14	Zfp777 (ENSPEMG00000017296) #15	Zfp956 (ENSPEMG00000028517) #16	ENSPEMG00000027663	Zfp212 (ENSPEMG00000030229) #17	Zfp282 (ENSPEMG00000018683) #18	Zfp398 (ENSPEMG00000026268) #19	Zfp786 (ENSPEMG00000009822) #20	Pdia4 (ENSPEMG00000014275) #21	Ezh2 (ENSPEMG00000017676) #22	ENSPEMG00000030487	Cul1 (ENSPEMG00000010105) #23	Cntnap2 (ENSPEMG00000025213) #24	ENSPEMG00000025241	Tpk1 (ENSPEMG00000000639) #25	Nobox (ENSPEMG00000008804) #26	Arhgef5 (ENSPEMG00000010453) #27	ENSPEMG00000029964 #28	ENSPEMG00000025819 #28	Or2a7 (ENSPEMG00000002427) #31	Or2a52 (ENSPEMG00000028799) #32	ENSPEMG00000027849 #33	ENSPEMG00000031198 #33	Or2a25 (ENSPEMG00000017463) #34	Or2a5 (ENSPEMG00000026015) #35
Cricetinae	ANCESTRAL SPECIES	23																ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.f #28	ENSGT00940000153255.a.e #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Chinese hamster chok1gshd	MODERN SPECIES	54	ENSCGRG00001003461	ENSCGRG00001006338	ENSCGRG00001004929	ENSCGRG00001002207	Cdk6 (ENSCGRG00001004424)	Fam133b (ENSCGRG00001015870)	ENSCGRG00001021494	ENSCGRG00001007347	Gatad1 (ENSCGRG00001009429)	Tmbim7 (ENSCGRG00001011095)	Ankib1 (ENSCGRG00001018076)	Rbm48 (ENSCGRG00001016551)	Krit1 (ENSCGRG00001001397)	Lrrd1 (ENSCGRG00001013802)	Cyp51 (ENSCGRG00001017340)	Ezh2 (ENSCGRG00001010172) #22	Cul1 (ENSCGRG00001020843) #23	Cntnap2 (ENSCGRG00001022024) #24	Tpk1 (ENSCGRG00001023347) #25	Nobox (ENSCGRG00001019598) #26	Arhgef5 (ENSCGRG00001001249) #27	ENSCGRG00001002523 #28	ENSCGRG00001023810 #28	Or2a7 (ENSCGRG00001012281) #31	Or2a52 (ENSCGRG00001012040) #32	ENSCGRG00001001972 #33	ENSCGRG00001016349 #33	Or2a25 (ENSCGRG00001000693) #34	Or2a5 (ENSCGRG00001012319) #35	Or6b1 (ENSCGRG00001011897) #36	Or2q1 (ENSCGRG00001011614) #37
Golden Hamster	MODERN SPECIES	890																Ezh2 (ENSMAUG00000008772) #22	Cul1 (ENSMAUG00000008868) #23	ENSMAUG00000008677	ENSMAUG00000008420
Upper Galilee mountains blind mole rat	MODERN SPECIES	674																Ezh2 (ENSNGAG00000006245) #22	Cul1 (ENSNGAG00000000354) #23	Cntnap2 (ENSNGAG00000010788) #24
Lesser Egyptian jerboa	MODERN SPECIES	81																Ezh2 (ENSJJAG00000014722) #22	ENSJJAG00000003559 #23	ENSJJAG00000024312	ENSJJAG00000005242	ENSJJAG00000002419	Nobox (ENSJJAG00000017542) #26	Or6b1 (ENSJJAG00000016325) #36	Tcaf1 (ENSJJAG00000020805)	ENSJJAG00000010770	Epha1 (ENSJJAG00000021813)	Zyx (ENSJJAG00000016066)	Casp2 (ENSJJAG00000008256)	Tmem139 (ENSJJAG00000014062)	ENSJJAG00000012066	Tas2r144 (ENSJJAG00000017432)	Trpv5 (ENSJJAG00000020226)
Kangaroo rat	MODERN SPECIES	375												ENSDORG00000016708 #18	Zfp398 (ENSDORG00000027682) #19	ENSDORG00000023141	Pdia4 (ENSDORG00000004748) #21	Ezh2 (ENSDORG00000007731) #22	Cul1 (ENSDORG00000000684) #23	ENSDORG00000026755	Tpk1 (ENSDORG00000016338) #25	Arhgef5 (ENSDORG00000015103) #27	Or2a7 (ENSDORG00000030004) #31	Or2a5 (ENSDORG00000019850) #35	Or6b1 (ENSDORG00000019866) #36	ENSDORG00000027829 ##37	ENSDORG00000025500 ##37	ENSDORG00000026638 ##37	Tcaf1 (ENSDORG00000002952)	Tcaf2 (ENSDORG00000011645)	Tcaf3 (ENSDORG00000008389)	Or10ac1 (ENSDORG00000007134)	ENSDORG00000023452 ##37
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d.c ##37
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d.c ##37
Marmotini	ANCESTRAL SPECIES	32	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a.c.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b.c #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d.c.h ##37
Marmotini_b	ANCESTRAL SPECIES	45	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a.c.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b.c #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d.c.h ##37	ENSGT01090000260044.A.b.b.d.c.g ##37
Arctic ground squirrel	MODERN SPECIES	485	RARRES2 (ENSUPAG00010020908)	LRRC61 (ENSUPAG00010020903) #7	ATP6V0E2 (ENSUPAG00010020899) #8	ZNF862 (ENSUPAG00010020891) #9	ZNF467 (ENSUPAG00010020709) #11	KRBA1 (ENSUPAG00010020654) #12	ZNF746 (ENSUPAG00010020617) #14	ZNF777 (ENSUPAG00010020609) #15	ENSUPAG00010020603 #16	ENSUPAG00010020597	ZNF212 (ENSUPAG00010020592) #17	ZNF282 (ENSUPAG00010020587) #18	ZNF398 (ENSUPAG00010020583) #19	ENSUPAG00010020574 #20	PDIA4 (ENSUPAG00010020571) #21	EZH2 (ENSUPAG00010020450) #22	CUL1 (ENSUPAG00010020437) #23
Squirrel	MODERN SPECIES	127	RARRES2 (ENSSTOG00000029082)	LRRC61 (ENSSTOG00000029250) #7	ATP6V0E2 (ENSSTOG00000030808) #8	ZNF862 (ENSSTOG00000010892) #9	ENSSTOG00000023004 #10	ZNF467 (ENSSTOG00000025878) #11	KRBA1 (ENSSTOG00000013288) #12	ZNF746 (ENSSTOG00000021079) #14	ZNF777 (ENSSTOG00000027760) #15	ENSSTOG00000022081 #16	ZNF212 (ENSSTOG00000013393) #17	ZNF282 (ENSSTOG00000021295) #18	ZNF398 (ENSSTOG00000013384) #19	ZNF786 (ENSSTOG00000023568) #20	PDIA4 (ENSSTOG00000023701) #21	EZH2 (ENSSTOG00000005968) #22	CUL1 (ENSSTOG00000005933) #23	CNTNAP2 (ENSSTOG00000007450) #24	TPK1 (ENSSTOG00000021109) #25	ENSSTOG00000026570 #26	ARHGEF5 (ENSSTOG00000027835) #27	ENSSTOG00000030262 #31	ENSSTOG00000024219 #32	OR2A25 (ENSSTOG00000032481) #34	OR2A5 (ENSSTOG00000031294) #35	OR6B1 (ENSSTOG00000021163) #36	ENSSTOG00000024073 #37	ENSSTOG00000022302 ##37	ENSSTOG00000032119 ##37	ENSSTOG00000031127 ##37	TCAF1 (ENSSTOG00000025138)
Alpin marmot	MODERN SPECIES	35	ENSMMMG00000006498	LRRC61 (ENSMMMG00000006541) #7	ATP6V0E2 (ENSMMMG00000006553) #8	ZNF862 (ENSMMMG00000006562) #9	ZNF467 (ENSMMMG00000006797) #11	KRBA1 (ENSMMMG00000006852) #12	ZNF746 (ENSMMMG00000006886) #14	ZNF777 (ENSMMMG00000006944) #15	ENSMMMG00000006955 #16	ENSMMMG00000006972	ZNF212 (ENSMMMG00000006983) #17	ZNF282 (ENSMMMG00000006992) #18	ZNF398 (ENSMMMG00000007052) #19	ZNF786 (ENSMMMG00000007070) #20	PDIA4 (ENSMMMG00000007099) #21	EZH2 (ENSMMMG00000007126) #22	CUL1 (ENSMMMG00000007363) #23	CNTNAP2 (ENSMMMG00000007396) #24	ENSMMMG00000007425	ENSMMMG00000007430	TPK1 (ENSMMMG00000007491) #25	ARHGEF5 (ENSMMMG00000007524) #27	ENSMMMG00000007656 #28	ENSMMMG00000007663 #31	OR2A2 (ENSMMMG00000007675) #32	ENSMMMG00000007684 #33	ENSMMMG00000007690 #33	OR2A25 (ENSMMMG00000007701) #34	OR2A5 (ENSMMMG00000007707) #35	OR6B1 (ENSMMMG00000007724) #36	ENSMMMG00000007734 #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	17	ATP6V0E2 (ENSSVLG00005009947) #8	ZNF862 (ENSSVLG00005009981) #9	ZNF467 (ENSSVLG00005007469) #11	KRBA1 (ENSSVLG00005007562) #12	ENSSVLG00005007724	ENSSVLG00005007745	ZNF746 (ENSSVLG00005007767) #14	ZNF777 (ENSSVLG00005007807) #15	ENSSVLG00005007899 #16	ZNF783 (ENSSVLG00005007957)	ZNF282 (ENSSVLG00005008008) #18	ZNF398 (ENSSVLG00005008062) #19	ZNF425 (ENSSVLG00005008113)	ZNF786 (ENSSVLG00005008156) #20	PDIA4 (ENSSVLG00005008187) #21	ENSSVLG00005008353 #22	CUL1 (ENSSVLG00005008993) #23	CNTNAP2 (ENSSVLG00005009165) #24	ENSSVLG00005009336	ENSSVLG00005009358	TPK1 (ENSSVLG00005009468) #25	ENSSVLG00005009572	NOBOX (ENSSVLG00005009615) #26	ARHGEF5 (ENSSVLG00005009755) #27	ENSSVLG00005009868 #28	ENSSVLG00005009885 #31	OR2A2 (ENSSVLG00005009897) #32	ENSSVLG00005009922 #33	ENSSVLG00005009934 #33	OR2A25 (ENSSVLG00005009972) #34	OR2A5 (ENSSVLG00005009989) #35
Eurasian red squirrel	MODERN SPECIES	8	ZNF382 (ENSSVLG00005016314)	ZNF461 (ENSSVLG00005016383)	ZNF567 (ENSSVLG00005016410)	ENSSVLG00005016480	ENSSVLG00005016497	ENSSVLG00005016545	ENSSVLG00005016594	ENSSVLG00005016648	ENSSVLG00005016690	ENSSVLG00005016744	ENSSVLG00005016765	ENSSVLG00005016802	ENSSVLG00005016859	ENSSVLG00005016874	ENSSVLG00005016994	ENSSVLG00005017056 #22	ENSSVLG00005017176	ENSSVLG00005017239	ENSSVLG00005017333	ZNF420 (ENSSVLG00005017033)	ENSSVLG00005017065	ZNF345 (ENSSVLG00005017121)	ENSSVLG00005017140	ENSSVLG00005017182	ENSSVLG00005017463	ZNF540 (ENSSVLG00005017495)	ZFP30 (ENSSVLG00005017656)	ENSSVLG00005017794	ZNF573 (ENSSVLG00005017817)	ENSSVLG00005017868	ENSSVLG00005017914
Hystricomorpha	ANCESTRAL SPECIES	35	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b.gb #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Hystricomorpha_a	ANCESTRAL SPECIES	40	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b.gb #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Guinea pig	MODERN SPECIES	10									ZNF746 (ENSCPOG00000033310) #14	ZNF777 (ENSCPOG00000014359) #15	ZNF212 (ENSCPOG00000037723) #17	ZNF282 (ENSCPOG00000006586) #18	ZNF398 (ENSCPOG00000031717) #19	ZNF786 (ENSCPOG00000030087) #20	PDIA4 (ENSCPOG00000004073) #21	EZH2 (ENSCPOG00000003710) #22	CUL1 (ENSCPOG00000021263) #23	CNTNAP2 (ENSCPOG00000001691) #24	TPK1 (ENSCPOG00000003254) #25	ENSCPOG00000040661	ENSCPOG00000005512 #26	ARHGEF5 (ENSCPOG00000005495) #27	OR2A14 (ENSCPOG00000020106) #33	ENSCPOG00000032093 #31	OR2A12 (ENSCPOG00000031602) ##28	OR2A25 (ENSCPOG00000007070) #34	OR2A5 (ENSCPOG00000000054) #35	OR6B1 (ENSCPOG00000024372) #36	ENSCPOG00000021103 #37	ENSCPOG00000019334 ##37	ENSCPOG00000032977 ##37
Hystricomorpha_b	ANCESTRAL SPECIES	40	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b.gb #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.d.c ##37	ENSGT01090000260044.A.b.b.d.d ##37	ENSGT00390000017365.b.d
Long-tailed chinchilla	MODERN SPECIES	198	RARRES2 (ENSCLAG00000005165)	LRRC61 (ENSCLAG00000005049) #7	ATP6V0E2 (ENSCLAG00000005030) #8	ZNF862 (ENSCLAG00000004782) #9	ENSCLAG00000001622 #10	ZNF467 (ENSCLAG00000001505) #11	KRBA1 (ENSCLAG00000001279) #12	ZNF746 (ENSCLAG00000001200) #14	ZNF777 (ENSCLAG00000001070) #15	ENSCLAG00000000999	ZNF212 (ENSCLAG00000000945) #17	ZNF282 (ENSCLAG00000001502) #18	ZNF398 (ENSCLAG00000001461) #19	ZNF786 (ENSCLAG00000001403) #20	PDIA4 (ENSCLAG00000001392) #21	EZH2 (ENSCLAG00000001762) #22	CUL1 (ENSCLAG00000001574) #23	CNTNAP2 (ENSCLAG00000001496) #24	TPK1 (ENSCLAG00000001390) #25	ENSCLAG00000001319 #26	ARHGEF5 (ENSCLAG00000001290) #27	OR2A2 (ENSCLAG00000001278) #32	OR2A14 (ENSCLAG00000017463) #33	OR2A25 (ENSCLAG00000017450) #34	OR6B1 (ENSCLAG00000017449) #36	ENSCLAG00000017443 #37	ENSCLAG00000017442 ##37	ENSCLAG00000017447 ##37	TCAF1 (ENSCLAG00000001425)	ENSCLAG00000001340	ENSCLAG00000001294
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	14	KRBA1 (ENSHGLG00000008220) #12	ENSHGLG00000038220 #14	ENSHGLG00000036350 #14	ENSHGLG00000032687 #17	ENSHGLG00000035463 #15	ENSHGLG00000045157	ZNF282 (ENSHGLG00000018943) #18	ZNF398 (ENSHGLG00000015537) #19	ENSHGLG00000037182	ENSHGLG00000044175	ZNF425 (ENSHGLG00000005928)	ENSHGLG00000006323	ENSHGLG00000048383	ENSHGLG00000047408 #20	PDIA4 (ENSHGLG00000045284) #21	ENSHGLG00000005665 #22	ENSHGLG00000048357	ENSHGLG00000018651 #23	ENSHGLG00000038506	ENSHGLG00000041236	OR5AK2 (ENSHGLG00000020851)	ENSHGLG00000021010	ENSHGLG00000013606	ENSHGLG00000013316	ENSHGLG00000021052	ENSHGLG00000046596	ENSHGLG00000020844	OR9G4 (ENSHGLG00000037528)	ENSHGLG00000006558	ENSHGLG00000001069	ENSHGLG00000035778
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000006014	ENSHGLG00000049216	ENSHGLG00000007282	ENSHGLG00000049148	ENSHGLG00000007912	BFAR (ENSHGLG00000008907)	PARN (ENSHGLG00000010886)	MRTFB (ENSHGLG00000019009)	ENSHGLG00000049641	ERCC4 (ENSHGLG00000016661)	ENSHGLG00000017807	ENSHGLG00000035327	SHISA9 (ENSHGLG00000013207)	CPPED1 (ENSHGLG00000011022)	SNX29 (ENSHGLG00000012310)	ENSHGLG00000036550 #22	ENSHGLG00000049116	TNFRSF17 (ENSHGLG00000032744)	ENSHGLG00000047654	ENSHGLG00000010520	ENSHGLG00000006774	ZC3H7A (ENSHGLG00000008151)	TXNDC11 (ENSHGLG00000010372)	ENSHGLG00000011493	ENSHGLG00000032975	LITAF (ENSHGLG00000012766)	ENSHGLG00000044955	ENSHGLG00000040103	ENSHGLG00000046405	ENSHGLG00000009798	THUMPD1 (ENSHGLG00000000952)
Lagomorpha	ANCESTRAL SPECIES	99							ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a	ENSGT00390000017365.b.c.b.a	ENSGT00390000017365.b.c.b.b	ENSGT01090000260044.A.b.b.c.b ##37
Rabbit	MODERN SPECIES	18	ENSOCUG00000039088	CHRM2 (ENSOCUG00000016569)	PTN (ENSOCUG00000002203)	DGKI (ENSOCUG00000010264)	CREB3L2 (ENSOCUG00000007313)	ENSOCUG00000016986	ENSOCUG00000023410	ZNF746 (ENSOCUG00000008431) #14	ZNF777 (ENSOCUG00000007975) #15	ENSOCUG00000038553 #16	ZNF212 (ENSOCUG00000008427) #17	ZNF282 (ENSOCUG00000008423) #18	ZNF398 (ENSOCUG00000008416) #19	ZNF786 (ENSOCUG00000001669) #20	PDIA4 (ENSOCUG00000001661) #21	EZH2 (ENSOCUG00000001676) #22	CUL1 (ENSOCUG00000002543) #23	CNTNAP2 (ENSOCUG00000033342) #24	ENSOCUG00000031247	ENSOCUG00000038152	ENSOCUG00000034629	TPK1 (ENSOCUG00000003406) #25	NOBOX (ENSOCUG00000001027) #26	ARHGEF5 (ENSOCUG00000025879) #27	ENSOCUG00000010368 #28	ENSOCUG00000021687 #31	ENSOCUG00000006436	ENSOCUG00000034348	ENSOCUG00000034276	OR2A14 (ENSOCUG00000025612) #33	ENSOCUG00000022708
Pika	MODERN SPECIES	1312																EZH2 (ENSOPRG00000007788) #22	ENSOPRG00000007760 #23
Tree shrew	MODERN SPECIES	1890																EZH2 (ENSTBEG00000015636) #22	CUL1 (ENSTBEG00000015365) #23
Primates	ANCESTRAL SPECIES	12	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.d ##37
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d
Lemuriformes_a	ANCESTRAL SPECIES	90	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24
Greater bamboo lemur	MODERN SPECIES	1476	LRRC61 (ENSPSMG00000014778) #7	ATP6V0E2 (ENSPSMG00000014784) #8	ZNF862 (ENSPSMG00000014838) #9	ZNF467 (ENSPSMG00000015008) #11	KRBA1 (ENSPSMG00000015026) #12	ENSPSMG00000015035	ZNF746 (ENSPSMG00000015054) #14	ZNF777 (ENSPSMG00000015071) #15	ZNF783 (ENSPSMG00000015077)	ZNF212 (ENSPSMG00000015112) #17	ZNF282 (ENSPSMG00000015129) #18	ZNF398 (ENSPSMG00000015145) #19	ZNF425 (ENSPSMG00000015159)	ZNF786 (ENSPSMG00000015169) #20	PDIA4 (ENSPSMG00000015224) #21	EZH2 (ENSPSMG00000015620) #22	CUL1 (ENSPSMG00000015994) #23	ENSPSMG00000016113 #24
Coquerels sifaka	MODERN SPECIES	885	RARRES2 (ENSPCOG00000021222)	ATP6V0E2 (ENSPCOG00000018286) #8	ZNF862 (ENSPCOG00000027936) #9	ENSPCOG00000015307 #10	ZNF467 (ENSPCOG00000019427) #11	KRBA1 (ENSPCOG00000013325) #12	ZNF746 (ENSPCOG00000017818) #14	ZNF777 (ENSPCOG00000023824) #15	ZNF783 (ENSPCOG00000019662)	ZNF212 (ENSPCOG00000013577) #17	ZNF282 (ENSPCOG00000014038) #18	ZNF398 (ENSPCOG00000008525) #19	ZNF425 (ENSPCOG00000003477)	ZNF786 (ENSPCOG00000021694) #20	PDIA4 (ENSPCOG00000000644) #21	EZH2 (ENSPCOG00000021869) #22	CUL1 (ENSPCOG00000025954) #23	ENSPCOG00000017718 #24	ENSPCOG00000016714
Mouse lemur	MODERN SPECIES	2	ATP6V0E2 (ENSMICG00000044948) #8	ZNF862 (ENSMICG00000035733) #9	ENSMICG00000029304 #10	ZNF467 (ENSMICG00000031746) #11	KRBA1 (ENSMICG00000009603) #12	ZNF746 (ENSMICG00000006405) #14	ZNF777 (ENSMICG00000006399) #15	ZNF783 (ENSMICG00000047374)	ENSMICG00000016621 #17	ENSMICG00000045820 #17	ZNF282 (ENSMICG00000036931) #18	ZNF398 (ENSMICG00000034934) #19	ZNF425 (ENSMICG00000036857)	ZNF786 (ENSMICG00000036503) #20	PDIA4 (ENSMICG00000030583) #21	EZH2 (ENSMICG00000011127) #22	CUL1 (ENSMICG00000011113) #23	CNTNAP2 (ENSMICG00000003632) #24	ENSMICG00000047864	ENSMICG00000044950	TPK1 (ENSMICG00000002272) #25	NOBOX (ENSMICG00000002270) #26	ARHGEF5 (ENSMICG00000037381) #27	ENSMICG00000045044 #28	OR2A14 (ENSMICG00000045128) #33	ENSMICG00000041465 ##37	ENSMICG00000045503 ##37	TCAF1 (ENSMICG00000037779)	ENSMICG00000011809	EPHA1 (ENSMICG00000015546)	ZYX (ENSMICG00000031303)
Bushbaby	MODERN SPECIES	168	REPIN1 (ENSOGAG00000030454)	LRRC61 (ENSOGAG00000024689) #7	ZNF862 (ENSOGAG00000004409) #9	ENSOGAG00000026124 #10	ZNF467 (ENSOGAG00000034209) #11	KRBA1 (ENSOGAG00000005944) #12	ZNF746 (ENSOGAG00000028106) #14	ZNF777 (ENSOGAG00000028579) #15	ZNF783 (ENSOGAG00000003289)	ZNF212 (ENSOGAG00000031023) #17	ZNF282 (ENSOGAG00000030129) #18	ZNF398 (ENSOGAG00000016740) #19	ZNF425 (ENSOGAG00000001561)	ZNF786 (ENSOGAG00000030053) #20	PDIA4 (ENSOGAG00000009163) #21	EZH2 (ENSOGAG00000010387) #22	CUL1 (ENSOGAG00000014715) #23	ENSOGAG00000005606 #24	ENSOGAG00000032360	ENSOGAG00000033491 #24	ENSOGAG00000034495	ENSOGAG00000005588
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.b ##37
Tarsier	MODERN SPECIES	4257																EZH2 (ENSTSYG00000000831) #22	ENSTSYG00000035002	CUL1 (ENSTSYG00000000825) #23
Simiiformes	ANCESTRAL SPECIES	12	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00390000008502.h	ENSGT00530000065058	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00950000182767.b.b.d.hb.b.a	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28
Cercopithecidae	ANCESTRAL SPECIES	31	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.a	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00390000008502.h	ENSGT00530000065058	ENSGT00940000154516.b.ib.a #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00950000182767.b.b.d.hb.b.a.b.b.b	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.a	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b.ib.a #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00950000182767.b.b.d.hb.b.a.b.b.b	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.a	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00390000008496.db.b	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b.ib.a #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00950000182767.b.b.d.hb.b.a.b.b.b	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34
Macaca	ANCESTRAL SPECIES	3	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00390000008496.db.b.a	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b.ib.a #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00950000182767.b.b.d.hb.b.a.b.b.b	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34
Pig-tailed macaque	MODERN SPECIES	531	ENSMNEG00000036038	ENSMNEG00000024297	ZNF862 (ENSMNEG00000042342) #9	ENSMNEG00000027715 #10	ZNF467 (ENSMNEG00000033754) #11	KRBA1 (ENSMNEG00000040364) #12	ENSMNEG00000035360	ZNF746 (ENSMNEG00000034196) #14	ZNF777 (ENSMNEG00000044181) #15	ZNF783 (ENSMNEG00000030725)	ZNF282 (ENSMNEG00000042449) #18	ZNF398 (ENSMNEG00000030503) #19	ZNF425 (ENSMNEG00000036845)	ZNF786 (ENSMNEG00000031347) #20	PDIA4 (ENSMNEG00000038936) #21	EZH2 (ENSMNEG00000042301) #22	ENSMNEG00000027350	CUL1 (ENSMNEG00000035175) #23	C7orf33 (ENSMNEG00000039916)	CNTNAP2 (ENSMNEG00000043709) #24	TPK1 (ENSMNEG00000028637) #25	NOBOX (ENSMNEG00000036074) #26	ARHGEF5 (ENSMNEG00000043207) #27	ENSMNEG00000018944 #28	ENSMNEG00000035385	OR2A2 (ENSMNEG00000026500) #32	ENSMNEG00000004910 #36
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000156207.b	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT01100000263539.b.b.b.b.b.a.a.a.a.b.a	ENSGT00940000155013 #22	ENSGT00390000008496.db.b.a	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b.ib.a #24	ENSGT00390000003897.s.b.a.a.b.e.b	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00950000182767.b.b.d.hb.b.a.b.b.b	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000045573 #8	ZNF862 (ENSMFAG00000045923) #9	ENSMFAG00000065765	KRBA1 (ENSMFAG00000036727) #12	ENSMFAG00000050276	ENSMFAG00000056987 #14	ENSMFAG00000045177 #14	ZNF777 (ENSMFAG00000050489) #15	ENSMFAG00000045369	ZNF398 (ENSMFAG00000032929) #19	ZNF425 (ENSMFAG00000053652)	ZNF786 (ENSMFAG00000057080) #20	PDIA4 (ENSMFAG00000037988) #21	ENSMFAG00000064446	ENSMFAG00000049524	EZH2 (ENSMFAG00000040192) #22	ENSMFAG00000050488	CUL1 (ENSMFAG00000046081) #23	C7orf33 (ENSMFAG00000050537)	ENSMFAG00000064226	ENSMFAG00000051723	CNTNAP2 (ENSMFAG00000046348) #24	ENSMFAG00000032977	TPK1 (ENSMFAG00000035720) #25	NOBOX (ENSMFAG00000045293) #26	ARHGEF5 (ENSMFAG00000043922) #27	ENSMFAG00000059684 #28	ENSMFAG00000050427 #28	ENSMFAG00000065719 #31	ENSMFAG00000009700	ENSMFAG00000029291 #32
Rhesus	MODERN SPECIES	13	LRRC61 (ENSMMUG00000005233) #7	ENSMMUG00000002273	ZNF862 (ENSMMUG00000011122) #9	ATP6V0E2 (ENSMMUG00000056441) #8	ZNF467 (ENSMMUG00000051020) #11	KRBA1 (ENSMMUG00000017159) #12	ZNF746 (ENSMMUG00000018707) #14	ZNF777 (ENSMMUG00000002497) #15	ZNF212 (ENSMMUG00000011788) #18	ENSMMUG00000050711	ZNF398 (ENSMMUG00000000767) #19	ZNF425 (ENSMMUG00000011237)	ZNF786 (ENSMMUG00000018549) #20	PDIA4 (ENSMMUG00000042048) #21	ENSMMUG00000049864	EZH2 (ENSMMUG00000013494) #22	ENSMMUG00000032580	CUL1 (ENSMMUG00000017541) #23	C3H7orf33 (ENSMMUG00000046165)	ENSMMUG00000053883	CNTNAP2 (ENSMMUG00000015772) #24	ENSMMUG00000006854	TPK1 (ENSMMUG00000008650) #25	NOBOX (ENSMMUG00000020609) #26	ARHGEF5 (ENSMMUG00000010134) #27	ENSMMUG00000051442 #28	ENSMMUG00000060422 #28	ENSMMUG00000064492 #31	ENSMMUG00000037970	OR2A14 (ENSMMUG00000056692) #33	OR2A2 (ENSMMUG00000051615) #32
Cercopithecinae_b	ANCESTRAL SPECIES	38	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.a	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00390000008496.db.b	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b.ib.a #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT01090000260024.A.a.b.a.b.a.b #36
Olive baboon	MODERN SPECIES	14	ENSPANG00000021669	REPIN1 (ENSPANG00000019896)	ENSPANG00000023420	LRRC61 (ENSPANG00000016762) #7	ENSPANG00000007835 #8	ZNF862 (ENSPANG00000009649) #9	ZNF467 (ENSPANG00000006708) #11	KRBA1 (ENSPANG00000013260) #12	ZNF746 (ENSPANG00000017316) #14	ZNF777 (ENSPANG00000023421) #15	ZNF783 (ENSPANG00000008719)	ENSPANG00000042111 #17	ZNF398 (ENSPANG00000046420) #19	ZNF425 (ENSPANG00000021720)	PDIA4 (ENSPANG00000017763) #21	EZH2 (ENSPANG00000018691) #22	CUL1 (ENSPANG00000000866) #23	ENSPANG00000034490	ENSPANG00000039378	C7orf33 (ENSPANG00000007102)	ENSPANG00000046018	CNTNAP2 (ENSPANG00000008720) #24	ENSPANG00000014626	ENSPANG00000040234	ENSPANG00000047822	ENSPANG00000029439	ENSPANG00000042289	TPK1 (ENSPANG00000002884) #25	ENSPANG00000045091	NOBOX (ENSPANG00000018829) #26	ARHGEF5 (ENSPANG00000016463) #27
Cercopithecinae_d	ANCESTRAL SPECIES	25	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.a	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00390000008496.db.b	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b.ib.a #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.b #28	ENSGT00940000153255.b.a.b #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d.m.b ##37	ENSGT01090000260044.A.b.b.d.m.a ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a	ENSGT00940000160920
Drill	MODERN SPECIES	1012					ZNF746 (ENSMLEG00000036958) #14	ENSMLEG00000032180	ZNF777 (ENSMLEG00000043487) #15	ENSMLEG00000041646	ZNF783 (ENSMLEG00000018683)	ZNF212 (ENSMLEG00000042732) #17	ZNF282 (ENSMLEG00000043161) #18	ZNF398 (ENSMLEG00000010475) #19	ZNF425 (ENSMLEG00000000829)	ZNF786 (ENSMLEG00000027484) #20	PDIA4 (ENSMLEG00000043525) #21	EZH2 (ENSMLEG00000041853) #22	CUL1 (ENSMLEG00000044437) #23	ENSMLEG00000042394	C7orf33 (ENSMLEG00000039098)	ENSMLEG00000043674 #24	ENSMLEG00000040477	IL10RB (ENSMLEG00000040401)	IFNAR2 (ENSMLEG00000033683)
Sooty mangabey	MODERN SPECIES	636	LRRC61 (ENSCATG00000020321) #7	ENSCATG00000039745	ENSCATG00000045053 #8	ZNF862 (ENSCATG00000033863) #9	ENSCATG00000040082 #10	ZNF467 (ENSCATG00000036459) #11	KRBA1 (ENSCATG00000037619) #12	ENSCATG00000029298	ZNF746 (ENSCATG00000041908) #14	ZNF777 (ENSCATG00000031987) #15	ZNF282 (ENSCATG00000011929) #18	ZNF398 (ENSCATG00000041607) #19	ZNF425 (ENSCATG00000043247)	ZNF786 (ENSCATG00000040972) #20	PDIA4 (ENSCATG00000030928) #21	EZH2 (ENSCATG00000035682) #22	ENSCATG00000030812	CUL1 (ENSCATG00000041054) #23	C7orf33 (ENSCATG00000037017)	CNTNAP2 (ENSCATG00000040896) #24	TPK1 (ENSCATG00000031940) #25	NOBOX (ENSCATG00000039706) #26	ARHGEF5 (ENSCATG00000035744) #27	OR2A2 (ENSCATG00000008435) #32	OR6B1 (ENSCATG00000007210) #36	ENSCATG00000019114 ##37	OR2F1 (ENSCATG00000019473) ##37	TCAF1 (ENSCATG00000025197)	TCAF2C (ENSCATG00000039306)	EPHA1 (ENSCATG00000035726)	ZYX (ENSCATG00000030879)
Vervet Monkey	MODERN SPECIES	13	ATP6V0E2 (ENSCSAG00000006895) #8	ZNF862 (ENSCSAG00000006899) #9	ENSCSAG00000006904 #10	ENSCSAG00000006907	ZNF467 (ENSCSAG00000006913) #11	KRBA1 (ENSCSAG00000006959) #12	ZNF746 (ENSCSAG00000006985) #14	ZNF777 (ENSCSAG00000006994) #15	ENSCSAG00000006996	ZNF783 (ENSCSAG00000007001)	ZNF282 (ENSCSAG00000007010) #18	ZNF398 (ENSCSAG00000007015) #19	ZNF425 (ENSCSAG00000007020)	ZNF786 (ENSCSAG00000007023) #20	PDIA4 (ENSCSAG00000007026) #21	EZH2 (ENSCSAG00000007037) #22	CUL1 (ENSCSAG00000007057) #23	ENSCSAG00000019522	ENSCSAG00000007065 #24	TPK1 (ENSCSAG00000007078) #25	NOBOX (ENSCSAG00000007090) #26	ARHGEF5 (ENSCSAG00000007100) #27	ENSCSAG00000019521 #28	ENSCSAG00000007113 #32	OR2A14 (ENSCSAG00000019520) #33	OR2A2 (ENSCSAG00000019519) #32	OR2A12 (ENSCSAG00000019518) ##28	OR2A25 (ENSCSAG00000019517) #34	OR6B1 (ENSCSAG00000019516) #36	ENSCSAG00000019515 ##37	OR2F1 (ENSCSAG00000019164) ##37
Rhinopithecus	ANCESTRAL SPECIES	331					ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000153052.c.b.a.a.a.a.a.a.b.b.a	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00390000008502.h	ENSGT00530000065058	ENSGT00940000154516.b.ib.b #24
Golden snub-nosed monkey	MODERN SPECIES	1452							ZNF746 (ENSRROG00000045547) #14	ENSRROG00000036059	ZNF777 (ENSRROG00000034173) #15	ZNF783 (ENSRROG00000041062)	ZNF282 (ENSRROG00000041857) #18	ZNF398 (ENSRROG00000041624) #19	ZNF425 (ENSRROG00000017893)	ENSRROG00000044563	PDIA4 (ENSRROG00000044093) #21	EZH2 (ENSRROG00000034033) #22	CUL1 (ENSRROG00000029914) #23	ENSRROG00000041231	C7orf33 (ENSRROG00000036563)	ENSRROG00000041275 #24
Black snub-nosed monkey	MODERN SPECIES	2321				ZNF746 (ENSRBIG00000009398) #14	ENSRBIG00000032511	ZNF777 (ENSRBIG00000033059) #15	ENSRBIG00000023618	ZNF783 (ENSRBIG00000027067)	ZNF212 (ENSRBIG00000041274) #17	ZNF282 (ENSRBIG00000037602) #18	ZNF398 (ENSRBIG00000025520) #19	ZNF425 (ENSRBIG00000042005)	ZNF786 (ENSRBIG00000033283) #20	PDIA4 (ENSRBIG00000040572) #21	ENSRBIG00000031094	EZH2 (ENSRBIG00000034606) #22	CUL1 (ENSRBIG00000029940) #23	ENSRBIG00000036365	C7orf33 (ENSRBIG00000029766)
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.hb #23	ENSGT00390000008502.h	ENSGT00530000065058	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00390000017365.b.c.a	ENSGT00950000182767.b.b.d.hb.b.a.d.a	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32
Hominidae	ANCESTRAL SPECIES	11	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.hb #23	ENSGT00390000008502.h	ENSGT00530000065058	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.a.b #28	ENSGT00940000161677.c.b #31	ENSGT00950000182767.b.b.d.hb.b.a.d.a.b	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000158304.m.b	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.hb #23	ENSGT00390000008502.h	ENSGT00530000065058	ENSGT00940000164262	ENSGT00910000147802	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000158304.m.b	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.hb #23	ENSGT00530000065058	ENSGT00940000164262	ENSGT00910000147802	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d.m.b ##37
Pan	ANCESTRAL SPECIES	13	ENSGT00940000158304.m.b	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211.a #12	ENSGT00940000161747 #14	ENSGT00910000147008	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.hb #23	ENSGT00530000065058.a	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.a #28	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d.m.b ##37	ENSGT01090000260044.A.b.b.d.m.a ##37	ENSGT01090000260044.A.b.b.d.n ##37	ENSGT00390000017365.b.d
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	20	ENSPTRG00000045961	ENSPTRG00000046242	ATP6V0E2 (ENSPTRG00000019850) #8	ZNF862 (ENSPTRG00000019848) #9	ZNF467 (ENSPTRG00000019839) #11	KRBA1 (ENSPTRG00000019846) #12	ZNF746 (ENSPTRG00000028361) #14	ZNF777 (ENSPTRG00000023754) #15	ZNF783 (ENSPTRG00000019845)	ZNF212 (ENSPTRG00000019842) #17	ZNF282 (ENSPTRG00000019841) #18	ZNF398 (ENSPTRG00000023917) #19	ZNF425 (ENSPTRG00000028363)	ZNF786 (ENSPTRG00000022947) #20	PDIA4 (ENSPTRG00000019838) #21	EZH2 (ENSPTRG00000019837) #22	CUL1 (ENSPTRG00000019836) #23	C7H7orf33 (ENSPTRG00000019834)	ENSPTRG00000049263	CNTNAP2 (ENSPTRG00000048103) #24	TPK1 (ENSPTRG00000019830) #25	NOBOX (ENSPTRG00000019828) #26	ARHGEF5 (ENSPTRG00000019827) #27	ENSPTRG00000033853 #28	ENSPTRG00000044873 #32	OR2A2 (ENSPTRG00000049604) #32	OR2A12 (ENSPTRG00000045861) ##28	OR2A5 (ENSPTRG00000041832) #35	ENSPTRG00000045814 ##37	OR2F1 (ENSPTRG00000048148) ##37	OR2F2 (ENSPTRG00000050989) ##37
Chimpanzee	MODERN SPECIES	575												ENSPTRG00000050853 #19	ENSPTRG00000049327	ENSPTRG00000046444 #20	ENSPTRG00000048696 #21	ENSPTRG00000043336 #22	ENSPTRG00000045689 #23	ENSPTRG00000051491	ENSPTRG00000051967
Bonobo	MODERN SPECIES	20	LRRC61 (ENSPPAG00000026073) #7	ENSPPAG00000042515	ENSPPAG00000032602 #8	ZNF862 (ENSPPAG00000041754) #9	ZNF467 (ENSPPAG00000039762) #11	KRBA1 (ENSPPAG00000027153) #12	ZNF746 (ENSPPAG00000037165) #14	ENSPPAG00000015634	ZNF777 (ENSPPAG00000033110) #15	ZNF783 (ENSPPAG00000007874)	ENSPPAG00000042171 #18	ZNF398 (ENSPPAG00000027530) #19	ZNF425 (ENSPPAG00000041678)	ENSPPAG00000043093 #20	PDIA4 (ENSPPAG00000031367) #21	EZH2 (ENSPPAG00000031380) #22	CUL1 (ENSPPAG00000040446) #23	C7orf33 (ENSPPAG00000033018)	CNTNAP2 (ENSPPAG00000028252) #24	TPK1 (ENSPPAG00000043939) #25	NOBOX (ENSPPAG00000043960) #26	ARHGEF5 (ENSPPAG00000025717) #27	ENSPPAG00000009373 #28	ENSPPAG00000009030 #32	OR2A2 (ENSPPAG00000009891) #32	OR2A12 (ENSPPAG00000010115) ##28	OR2A5 (ENSPPAG00000005477) #35	OR6B1 (ENSPPAG00000016195) #36	ENSPPAG00000007480 ##37	OR2F1 (ENSPPAG00000007691) ##37	OR2F2 (ENSPPAG00000037486) ##37
Human	MODERN SPECIES	19	LRRC61 (ENSG00000127399) #7	ACTR3C (ENSG00000106526)	ATP6V0E2 (ENSG00000171130) #8	ZNF862 (ENSG00000106479) #9	ZNF467 (ENSG00000181444) #11	KRBA1 (ENSG00000133619) #12	ZNF746 (ENSG00000181220) #14	ZNF777 (ENSG00000196453) #15	ZNF783 (ENSG00000204946)	ZNF212 (ENSG00000170260) #17	ZNF282 (ENSG00000170265) #18	ZNF398 (ENSG00000197024) #19	ZNF425 (ENSG00000204947)	ZNF786 (ENSG00000197362) #20	PDIA4 (ENSG00000155660) #21	EZH2 (ENSG00000106462) #22	CUL1 (ENSG00000055130) #23	C7orf33 (ENSG00000170279)	CNTNAP2 (ENSG00000174469) #24	TPK1 (ENSG00000196511) #25	NOBOX (ENSG00000106410) #26	ARHGEF5 (ENSG00000050327) #27	OR2A1 (ENSG00000221970) #28	CTAGE8 (ENSG00000289604)	OR2A7 (ENSG00000243896) #31	OR2A42 (ENSG00000212807) #28	ARHGEF35 (ENSG00000213214) ##27	CTAGE4 (ENSG00000288784)	OR2A14 (ENSG00000221938) #33	OR2A2 (ENSG00000221989) #32	OR2A12 (ENSG00000221858) ##28
Gorilla	MODERN SPECIES	20	ENSGGOG00000034843	ENSGGOG00000006898 #8	ZNF862 (ENSGGOG00000011355) #9	ZNF467 (ENSGGOG00000011227) #11	KRBA1 (ENSGGOG00000003239) #12	ZNF746 (ENSGGOG00000015841) #14	ENSGGOG00000044051	ZNF777 (ENSGGOG00000016445) #15	ZNF783 (ENSGGOG00000038588)	ZNF212 (ENSGGOG00000006463) #17	ZNF282 (ENSGGOG00000043454) #18	ZNF398 (ENSGGOG00000005812) #19	ZNF425 (ENSGGOG00000007352)	ZNF786 (ENSGGOG00000009193) #20	PDIA4 (ENSGGOG00000025069) #21	EZH2 (ENSGGOG00000014846) #22	ENSGGOG00000042020 #23	ENSGGOG00000024068	C7orf33 (ENSGGOG00000040188)	ENSGGOG00000042855	CNTNAP2 (ENSGGOG00000037296) #24	ENSGGOG00000042266	TPK1 (ENSGGOG00000006824) #25	NOBOX (ENSGGOG00000022185) #26	ENSGGOG00000028460 #27	ARHGEF35 (ENSGGOG00000027744) ##27	ENSGGOG00000028195 #27	ENSGGOG00000010976 #32	OR2A2 (ENSGGOG00000034833) #32	OR2A12 (ENSGGOG00000013406) ##28	OR2A25 (ENSGGOG00000002620) #34
Orangutan	MODERN SPECIES	20	LRRC61 (ENSPPYG00000018165) #7	ENSPPYG00000018164 #8	ZNF862 (ENSPPYG00000018161) #9	ZNF467 (ENSPPYG00000018158) #11	KRBA1 (ENSPPYG00000018157) #12	ZNF746 (ENSPPYG00000035963) #14	ZNF777 (ENSPPYG00000018155) #15	ENSPPYG00000034161	ENSPPYG00000036437 #16	ZNF783 (ENSPPYG00000018153)	ZNF282 (ENSPPYG00000018152) #18	ZNF398 (ENSPPYG00000018150) #19	ZNF425 (ENSPPYG00000030790)	ZNF786 (ENSPPYG00000018149) #20	PDIA4 (ENSPPYG00000040520) #21	EZH2 (ENSPPYG00000018147) #22	CUL1 (ENSPPYG00000018146) #23	C7orf33 (ENSPPYG00000018145)	CNTNAP2 (ENSPPYG00000018144) #24	ENSPPYG00000041230	ENSPPYG00000036274	TPK1 (ENSPPYG00000018139) #25	NOBOX (ENSPPYG00000018138) #26	ARHGEF5 (ENSPPYG00000018137) #27	ENSPPYG00000031373 #28	ENSPPYG00000032909 #28	ENSPPYG00000040515 #31	ENSPPYG00000033303	OR2A14 (ENSPPYG00000018133) #33	OR2A2 (ENSPPYG00000030821) #32	ENSPPYG00000032294 ##28
Gibbon	MODERN SPECIES	3	ENSNLEG00000003814	REPIN1 (ENSNLEG00000003811)	ZNF862 (ENSNLEG00000003809) #9	ENSNLEG00000027606 #10	ENSNLEG00000003795	KRBA1 (ENSNLEG00000003755) #12	ZNF746 (ENSNLEG00000003735) #14	ZNF777 (ENSNLEG00000003719) #15	ZNF783 (ENSNLEG00000034402)	ZNF212 (ENSNLEG00000035644) #17	ENSNLEG00000033482 #18	ZNF398 (ENSNLEG00000003700) #19	ZNF425 (ENSNLEG00000003692)	ZNF786 (ENSNLEG00000003681) #20	PDIA4 (ENSNLEG00000003667) #21	EZH2 (ENSNLEG00000003596) #22	CUL1 (ENSNLEG00000003469) #23	ENSNLEG00000027343	C7orf33 (ENSNLEG00000036107)	ENSNLEG00000029278	ENSNLEG00000003449 #24	ENSNLEG00000032748	ENSNLEG00000035053	TPK1 (ENSNLEG00000031305) #25	NOBOX (ENSNLEG00000003406) #26	OR2A14 (ENSNLEG00000003401) #33	OR2A25 (ENSNLEG00000018428) #34	OR6B1 (ENSNLEG00000018427) #36	TCAF1 (ENSNLEG00000003360)	ENSNLEG00000028512	EPHA1 (ENSNLEG00000003297)
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d.m ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a	ENSGT01050000244815.B.a.b.a
Mas night monkey	MODERN SPECIES	981	ENSANAG00000025257	ATP6V0E2 (ENSANAG00000027446) #8	ZNF862 (ENSANAG00000038376) #9	ENSANAG00000022338 #10	ZNF467 (ENSANAG00000030826) #11	KRBA1 (ENSANAG00000036478) #12	ZNF746 (ENSANAG00000021972) #14	ZNF777 (ENSANAG00000021910) #15	ZNF783 (ENSANAG00000032203)	ZNF212 (ENSANAG00000028374) #17	ZNF282 (ENSANAG00000028829) #18	ZNF398 (ENSANAG00000030323) #19	ZNF425 (ENSANAG00000030471)	ZNF786 (ENSANAG00000035699) #20	PDIA4 (ENSANAG00000032843) #21	EZH2 (ENSANAG00000021412) #22	CUL1 (ENSANAG00000028288) #23	C7orf33 (ENSANAG00000025953)	ENSANAG00000026804
Cebidae	ANCESTRAL SPECIES	9	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d.m ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a	ENSGT01050000244815.B.a.b.a
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	20	ATP6V0E2 (ENSCJAG00000010462) #8	ZNF862 (ENSCJAG00000010440) #9	SSPOP (ENSCJAG00000010385) #10	ZNF467 (ENSCJAG00000010366) #11	KRBA1 (ENSCJAG00000010331) #12	ZNF746 (ENSCJAG00000010276) #14	ZNF777 (ENSCJAG00000032232) #15	ENSCJAG00000082335	ENSCJAG00000079585	ZNF282 (ENSCJAG00000041244) #18	ZNF398 (ENSCJAG00000010213) #19	ZNF425 (ENSCJAG00000035501)	ZNF786 (ENSCJAG00000010198) #20	PDIA4 (ENSCJAG00000010187) #21	ENSCJAG00000070644	EZH2 (ENSCJAG00000010084) #22	CUL1 (ENSCJAG00000010002) #23	C7orf33 (ENSCJAG00000009992)	CNTNAP2 (ENSCJAG00000009965) #24	ENSCJAG00000070060	TPK1 (ENSCJAG00000009941) #25	ENSCJAG00000084077	NOBOX (ENSCJAG00000009917) #26	ARHGEF5 (ENSCJAG00000009894) #27	ENSCJAG00000041911 ##31	ENSCJAG00000077435 #31	OR2A14 (ENSCJAG00000079101) #33	ENSCJAG00000080523 #32	OR6B1 (ENSCJAG00000021988) #36	ENSCJAG00000076690 ##37	ENSCJAG00000079688 ##37
Marmoset	MODERN SPECIES	5	ENSCJAG00000067025	SULT1C2 (ENSCJAG00000020217)	ENSCJAG00000058946	ENSCJAG00000079653	ENSCJAG00000086775	MALL (ENSCJAG00000043955)	ENSCJAG00000084655	ENSCJAG00000071168	ENSCJAG00000015268	ENSCJAG00000086853	IL37 (ENSCJAG00000017305)	ENSCJAG00000064987	ENSCJAG00000079662	IL1B (ENSCJAG00000016340)	ENSCJAG00000078489	ENSCJAG00000067675 #22	ENSCJAG00000071953	IL1A (ENSCJAG00000016368)	CKAP2L (ENSCJAG00000016397)	SLC20A1 (ENSCJAG00000016414)	ENSCJAG00000045651	CHCHD5 (ENSCJAG00000016421)	POLR1B (ENSCJAG00000016433)	TTL (ENSCJAG00000016475)	ZC3H6 (ENSCJAG00000016479)	ZC3H8 (ENSCJAG00000058380)	FBLN7 (ENSCJAG00000016508)	TMEM87B (ENSCJAG00000047336)	MERTK (ENSCJAG00000016540)	ANAPC1 (ENSCJAG00000016562)	ENSCJAG00000077151
Cebidae_a	ANCESTRAL SPECIES	33	ENSGT00390000016226	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00530000065058	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.b.a.b #32	ENSGT01090000260044.A.b.b.d.m ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a	ENSGT01090000260044.A.b.b.c.b ##37	ENSGT00940000160920	ENSGT00940000154273.a	ENSGT00950000183106.a.b	ENSGT00940000157383
Capuchin	MODERN SPECIES	304												ZNF398 (ENSCCAG00000020142) #19	ZNF425 (ENSCCAG00000035887)	ZNF786 (ENSCCAG00000028831) #20	PDIA4 (ENSCCAG00000020952) #21	EZH2 (ENSCCAG00000014731) #22	CUL1 (ENSCCAG00000024791) #23	C7orf33 (ENSCCAG00000015029)	CNTNAP2 (ENSCCAG00000024040) #24
Bolivian squirrel monkey	MODERN SPECIES	77	ENSSBOG00000032809 #8	ZNF862 (ENSSBOG00000029536) #9	ENSSBOG00000027581 #10	ZNF467 (ENSSBOG00000035911) #11	KRBA1 (ENSSBOG00000023434) #12	ENSSBOG00000032435	ZNF746 (ENSSBOG00000033513) #14	ZNF777 (ENSSBOG00000020818) #15	ZNF783 (ENSSBOG00000028470)	ZNF212 (ENSSBOG00000021829) #17	ZNF282 (ENSSBOG00000030816) #18	ZNF398 (ENSSBOG00000029670) #19	ZNF425 (ENSSBOG00000025421)	ZNF786 (ENSSBOG00000024494) #20	PDIA4 (ENSSBOG00000026719) #21	EZH2 (ENSSBOG00000025513) #22	CUL1 (ENSSBOG00000034725) #23	ENSSBOG00000034375	CNTNAP2 (ENSSBOG00000026079) #24	TPK1 (ENSSBOG00000030834) #25	NOBOX (ENSSBOG00000023160) #26	ARHGEF5 (ENSSBOG00000029152) #27	OR2A2 (ENSSBOG00000030078) #32	ENSSBOG00000012564 ##37	ENSSBOG00000020231 ##37	ENSSBOG00000019632 ##37	TCAF1 (ENSSBOG00000033615)	ENSSBOG00000020750	ENSSBOG00000033523 ##37	EPHA1 (ENSSBOG00000025999)	ZYX (ENSSBOG00000034186)
Laurasiatheria	ANCESTRAL SPECIES	21	ENSGT00730000114121	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.e.a #32	ENSGT00940000153255.a.j #28	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
Suina	ANCESTRAL SPECIES	15	ENSGT00940000156003	ENSGT00940000162514	ENSGT00940000155419	ENSGT00940000154738.a	ENSGT01030000234518.E.c.b	ENSGT00940000161182	ENSGT00940000160766	ENSGT00940000161910	ENSGT00940000155476	ENSGT00940000153143.a.b.b.a.b.d.b.b	ENSGT00940000153143.a.b.a	ENSGT00950000182882.A.b.a	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.j #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.b.e.a.a #32	ENSGT00940000153255.b.a.b.e.b #32	ENSGT00940000163962	ENSGT00390000009310	ENSGT01050000244900.a.a.a.a.a	ENSGT00950000182959.a.b.b.b	ENSGT01030000234555.a.a.b.a.a
Chacoan peccary	MODERN SPECIES	102				FZD1 (ENSCWAG00000009921)	CDK14 (ENSCWAG00000009969)	CLDN12 (ENSCWAG00000010265)	GTPBP10 (ENSCWAG00000010290)	CFAP69 (ENSCWAG00000010397)	ENSCWAG00000010659	ENSCWAG00000010696	TRGV9 (ENSCWAG00000010726)	AMPH (ENSCWAG00000010759)	ZNF398 (ENSCWAG00000011038) #19	ZNF786 (ENSCWAG00000011074) #20	PDIA4 (ENSCWAG00000011140) #21	EZH2 (ENSCWAG00000011279) #22	CUL1 (ENSCWAG00000012922) #23	CNTNAP2 (ENSCWAG00000013584) #24	TPK1 (ENSCWAG00000013865) #25	NOBOX (ENSCWAG00000013994) #26	ENSCWAG00000014094 #27	ENSCWAG00000014179 ##27	ENSCWAG00000014189 #28	ENSCWAG00000014207 #28	ENSCWAG00000014221 #31	ENSCWAG00000014232 #32	ENSCWAG00000014243 #32	ENSCWAG00000014273 #32	ENSCWAG00000014281	TMEM183A (ENSCWAG00000014319)	PPFIA4 (ENSCWAG00000014387)
Pig	MODERN SPECIES	17	PNPLA8 (ENSSSCG00000015446)	ENSSSCG00000015447	NME8 (ENSSSCG00000015448)	SFRP4 (ENSSSCG00000035299)	EPDR1 (ENSSSCG00000020963)	ENSSSCG00000060574	STARD3NL (ENSSSCG00000024028)	ENSSSCG00000023584	ENSSSCG00000052111	ENSSSCG00000058031	ENSSSCG00000029596	AMPH (ENSSSCG00000024136)	ZNF398 (ENSSSCG00000030294) #19	ZNF786 (ENSSSCG00000015450) #20	PDIA4 (ENSSSCG00000015453) #21	EZH2 (ENSSSCG00000028840) #22	CUL1 (ENSSSCG00000015455) #23	ENSSSCG00000027026	ENSSSCG00000034739 #24	ENSSSCG00000062427 #24	ENSSSCG00000015460	TPK1 (ENSSSCG00000015462) #25	NOBOX (ENSSSCG00000024977) #26	ARHGEF5 (ENSSSCG00000022525) #27	ENSSSCG00000031784 #28	ENSSSCG00000039428 #28	ENSSSCG00000015469 #31	ENSSSCG00000053281 #32	ENSSSCG00000054398 #32	ENSSSCG00000058131 #32	ENSSSCG00000032373 #32
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.e.a #32	ENSGT00940000153255.a.j #28	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
Camelidae	ANCESTRAL SPECIES	75	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00730000113799	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27
Arabian camel	MODERN SPECIES	33	ENSCDRG00005007606	ATP6V0E2 (ENSCDRG00005007571) #8	ZNF862 (ENSCDRG00005007537) #9	ENSCDRG00005006423 #10	ENSCDRG00005013467 #11	KRBA1 (ENSCDRG00005013285) #12	ZNF746 (ENSCDRG00005013225) #14	ZNF777 (ENSCDRG00005013186) #15	ZNF783 (ENSCDRG00005013116)	ZNF212 (ENSCDRG00005013056) #17	ENSCDRG00005013008 #18	ZNF398 (ENSCDRG00005012937) #19	ZNF425 (ENSCDRG00005012890)	ENSCDRG00005012840 #20	PDIA4 (ENSCDRG00005012733) #21	EZH2 (ENSCDRG00005009728) #22	CUL1 (ENSCDRG00005008952) #23	CNTNAP2 (ENSCDRG00005008615) #24	TPK1 (ENSCDRG00005008402) #25	NOBOX (ENSCDRG00005008289) #26	ENSCDRG00005008219 #27	ARHGEF35 (ENSCDRG00005008198) ##27	ENSCDRG00005008185 #28	ENSCDRG00005008162 #28	ENSCDRG00005008149 #31	ENSCDRG00005008139 #32	OR2A2 (ENSCDRG00005008104) #32	ENSCDRG00005008077 #33	ENSCDRG00005008053 ##28	ENSCDRG00005008032 #34	ENSCDRG00005007998 #35
Alpaca	MODERN SPECIES	2089																EZH2 (ENSVPAG00000001437) #22	CUL1 (ENSVPAG00000001435) #23	ENSVPAG00000001434	CNTNAP2 (ENSVPAG00000001433) #24
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.e.a #32	ENSGT00940000153255.a.j #28	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
Cetacea	ANCESTRAL SPECIES	13	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT01060000248581.B	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT00940000153255.b.a.b.e.a #32	ENSGT01090000260024.A.a.b.a.b.a.b #36
Blue whale	MODERN SPECIES	20	ZNF862 (ENSBMSG00010014984) #9	ZNF467 (ENSBMSG00010015022) #11	KRBA1 (ENSBMSG00010015086) #12	ENSBMSG00010015321	ENSBMSG00010015351	ZNF746 (ENSBMSG00010015370) #14	ZNF777 (ENSBMSG00010015407) #15	ZNF783 (ENSBMSG00010015444)	ZNF212 (ENSBMSG00010015479) #17	ZNF282 (ENSBMSG00010015520) #18	ZNF398 (ENSBMSG00010015542) #19	ZNF425 (ENSBMSG00010015559)	ZNF786 (ENSBMSG00010015574) #20	ENSBMSG00010015584	PDIA4 (ENSBMSG00010015608) #21	EZH2 (ENSBMSG00010015697) #22	ENSBMSG00010015912 #23	CNTNAP2 (ENSBMSG00010015981) #24	ENSBMSG00010016126	TPK1 (ENSBMSG00010016164) #25	NOBOX (ENSBMSG00010016220) #26	ARHGEF5 (ENSBMSG00010016275) #27	ENSBMSG00010016306 ##31	ENSBMSG00010016331 #32	ENSBMSG00010016390 #32	ENSBMSG00010016448 #32	ENSBMSG00010016461 #33	ENSBMSG00010016477	ENSBMSG00010016493 #37	ENSBMSG00010016516 ##37	TCAF1 (ENSBMSG00010016535)
Odontoceti	ANCESTRAL SPECIES	12	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.b.e.a #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d
Sperm whale	MODERN SPECIES	16	ZNF862 (ENSPCTG00005015542) #9	ZNF467 (ENSPCTG00005015581) #11	KRBA1 (ENSPCTG00005015665) #12	ENSPCTG00005016017	ZNF746 (ENSPCTG00005016054) #14	ZNF777 (ENSPCTG00005016087) #15	ZNF783 (ENSPCTG00005016140)	ZNF212 (ENSPCTG00005016225) #17	ENSPCTG00005016297	ZNF282 (ENSPCTG00005016360) #18	ZNF398 (ENSPCTG00005016394) #19	ENSPCTG00005016499 #20	ENSPCTG00005016560	ENSPCTG00005016579	PDIA4 (ENSPCTG00005016647) #21	EZH2 (ENSPCTG00005016739) #22	ENSPCTG00005017879 #23	CNTNAP2 (ENSPCTG00005017996) #24	ENSPCTG00005018322	ENSPCTG00005018514	TPK1 (ENSPCTG00005018561) #25	NOBOX (ENSPCTG00005018642) #26	ENSPCTG00005000239 #27	ARHGEF35 (ENSPCTG00005000251) ##27	ENSPCTG00005000269 #32	OR6B1 (ENSPCTG00005000285) #36	ENSPCTG00005000390 ##37	ENSPCTG00005000514 ##37	TCAF1 (ENSPCTG00005000549)	ENSPCTG00005000586	ENSPCTG00005000597
Odontoceti_a	ANCESTRAL SPECIES	13	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942.b	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604.b #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.b.e.a #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d
Dolphin	MODERN SPECIES	2018																EZH2 (ENSTTRG00000017375) #22	CUL1 (ENSTTRG00000017374) #23	ENSTTRG00000017372	CNTNAP2 (ENSTTRG00000017366) #24
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942.b	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604.b #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.b.e.a #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d
Vaquita	MODERN SPECIES	20	ENSPSNG00000007449	LRRC61 (ENSPSNG00000007503) #7	ZNF862 (ENSPSNG00000007619) #9	ZNF467 (ENSPSNG00000007641) #11	KRBA1 (ENSPSNG00000007699) #12	ENSPSNG00000007816	ZNF746 (ENSPSNG00000007845) #14	ZNF777 (ENSPSNG00000007876) #15	ZNF783 (ENSPSNG00000007907)	ZNF212 (ENSPSNG00000007962) #17	ZNF282 (ENSPSNG00000007995) #18	ZNF398 (ENSPSNG00000008029) #19	ZNF425 (ENSPSNG00000008099)	ENSPSNG00000008146 #20	PDIA4 (ENSPSNG00000008204) #21	EZH2 (ENSPSNG00000008348) #22	CUL1 (ENSPSNG00000008519) #23	CNTNAP2 (ENSPSNG00000008659) #24	ENSPSNG00000008849	ENSPSNG00000008881	ENSPSNG00000008905	TPK1 (ENSPSNG00000008970) #25	NOBOX (ENSPSNG00000009065) #26	ENSPSNG00000009126 #27	ARHGEF35 (ENSPSNG00000009162) ##27	ENSPSNG00000009200 ##31	ENSPSNG00000009222 #31	ENSPSNG00000009247 #32	ENSPSNG00000009303 #32	ENSPSNG00000009348 #37	ENSPSNG00000009477 ##37
Monodontidae	ANCESTRAL SPECIES	12	ENSGT00390000006479 #7	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942.b	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604.b #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.b.e.a #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a
Narwhal	MODERN SPECIES	306	LRRC61 (ENSMMNG00015010101) #7	ENSMMNG00015010088	ATP6V0E2 (ENSMMNG00015010081) #8	ZNF862 (ENSMMNG00015010067) #9	ZNF467 (ENSMMNG00015012836) #11	KRBA1 (ENSMMNG00015012818) #12	ZNF746 (ENSMMNG00015012807) #14	ZNF777 (ENSMMNG00015012792) #15	ZNF783 (ENSMMNG00015012775)	ZNF212 (ENSMMNG00015012745) #17	ZNF282 (ENSMMNG00015012727) #18	ZNF398 (ENSMMNG00015012717) #19	ZNF425 (ENSMMNG00015012710)	ZNF786 (ENSMMNG00015012701) #20	PDIA4 (ENSMMNG00015012681) #21	EZH2 (ENSMMNG00015012636) #22	CUL1 (ENSMMNG00015012600) #23	ENSMMNG00015012581	CNTNAP2 (ENSMMNG00015012551) #24	TPK1 (ENSMMNG00015012529) #25	NOBOX (ENSMMNG00015012513) #26	ARHGEF5 (ENSMMNG00015012479) #27	ENSMMNG00015012463 ##31	ENSMMNG00015012456 #31	ENSMMNG00015012446 #32	ENSMMNG00015012416 #37	TCAF1 (ENSMMNG00015012385)	ENSMMNG00015012366	ENSMMNG00015012344	ENSMMNG00015012316	EPHA1 (ENSMMNG00015012275)
Beluga whale	MODERN SPECIES	72	LRRC61 (ENSDLEG00000017524) #7	ATP6V0E2 (ENSDLEG00000017541) #8	ZNF862 (ENSDLEG00000017559) #9	ZNF467 (ENSDLEG00000017586) #11	KRBA1 (ENSDLEG00000017614) #12	ZNF746 (ENSDLEG00000017699) #14	ZNF777 (ENSDLEG00000017718) #15	ENSDLEG00000017744	ENSDLEG00000017755	ZNF212 (ENSDLEG00000017775) #17	ZNF282 (ENSDLEG00000017789) #18	ZNF398 (ENSDLEG00000017812) #19	ENSDLEG00000017830	ENSDLEG00000017839 #20	PDIA4 (ENSDLEG00000017859) #21	EZH2 (ENSDLEG00000017917) #22	CUL1 (ENSDLEG00000017987) #23	ENSDLEG00000018005	ENSDLEG00000018024 #24	ENSDLEG00000018094	ENSDLEG00000018109	TPK1 (ENSDLEG00000018115) #25	NOBOX (ENSDLEG00000018128) #26	ARHGEF5 (ENSDLEG00000018184) #27	ENSDLEG00000018203 ##31	ENSDLEG00000018211 #31	ENSDLEG00000018216 #32	OR6B1 (ENSDLEG00000018218) #36	ENSDLEG00000018235 ##37	TCAF1 (ENSDLEG00000018267)	ENSDLEG00000015864
Pecora	ANCESTRAL SPECIES	11	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.a.j #28	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Yarkand deer	MODERN SPECIES	9	REPIN1 (ENSCHYG00000023798)	ENSCHYG00000023773	ENSCHYG00000023752 #7	ATP6V0E2 (ENSCHYG00000023736) #8	ZNF862 (ENSCHYG00000023698) #9	ENSCHYG00000014569 #10	ZNF467 (ENSCHYG00000013976) #11	KRBA1 (ENSCHYG00000013836) #12	ZNF746 (ENSCHYG00000013776) #14	ZNF777 (ENSCHYG00000013704) #15	ZNF783 (ENSCHYG00000013569)	ENSCHYG00000013528 #18	ZNF398 (ENSCHYG00000013475) #19	ZNF786 (ENSCHYG00000013459) #20	PDIA4 (ENSCHYG00000013365) #21	EZH2 (ENSCHYG00000012976) #22	ENSCHYG00000012504 #23	ENSCHYG00000012440	CNTNAP2 (ENSCHYG00000012205) #24	TPK1 (ENSCHYG00000011988) #25	ENSCHYG00000011941 #26	ARHGEF5 (ENSCHYG00000011761) #27	ENSCHYG00000011730 #31	OR2A2 (ENSCHYG00000011688) #32	ENSCHYG00000011672 #33	ENSCHYG00000011637 #33	ENSCHYG00000011607 #37	ENSCHYG00000011582 ##37	ENSCHYG00000011545 ##37	TCAF1 (ENSCHYG00000011281)	ENSCHYG00000011238 ##37
Percora_a	ANCESTRAL SPECIES	11	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000161677.c.b #31	ENSGT00940000153255.a.j #28	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Siberian musk deer	MODERN SPECIES	84	ENSMMSG00000001520	REPIN1 (ENSMMSG00000001528)	RARRES2 (ENSMMSG00000001539)	LRRC61 (ENSMMSG00000001551) #7	ATP6V0E2 (ENSMMSG00000001562) #8	ZNF862 (ENSMMSG00000001577) #9	ENSMMSG00000001722 #10	ZNF467 (ENSMMSG00000002232) #11	KRBA1 (ENSMMSG00000002250) #12	ZNF746 (ENSMMSG00000002299) #14	ZNF777 (ENSMMSG00000002329) #15	ZNF783 (ENSMMSG00000002380)	ZNF398 (ENSMMSG00000002457) #19	ZNF786 (ENSMMSG00000002478) #20	PDIA4 (ENSMMSG00000002493) #21	EZH2 (ENSMMSG00000002589) #22	CUL1 (ENSMMSG00000003330) #23	CNTNAP2 (ENSMMSG00000003461) #24	ENSMMSG00000003508	TPK1 (ENSMMSG00000003526) #25	NOBOX (ENSMMSG00000003558) #26	ENSMMSG00000003576 #27	ENSMMSG00000003588 #28	ENSMMSG00000003598 #28	ENSMMSG00000003609 #31	ENSMMSG00000003615 #32	ENSMMSG00000003626 #32	OR2A14 (ENSMMSG00000003637) #33	ENSMMSG00000003641 #32	ENSMMSG00000003652 ##28	OR2A25 (ENSMMSG00000003659) #34
Bovidae	ANCESTRAL SPECIES	12	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.j.a #28	ENSGT00940000153255.a.j.b #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.a.i #28	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
Caprinae	ANCESTRAL SPECIES	10	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.j.a #28	ENSGT00940000153255.a.j.b #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.a.i #28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Rambouillet Sheep	MODERN SPECIES	20	ZNF775 (ENSOARG00020010260)	REPIN1 (ENSOARG00020010224)	RARRES2 (ENSOARG00020010160)	LRRC61 (ENSOARG00020010131) #7	ATP6V0E2 (ENSOARG00020010068) #8	ZNF862 (ENSOARG00020009909) #9	KRBA1 (ENSOARG00020008817) #12	ZNF746 (ENSOARG00020008505) #14	ZNF777 (ENSOARG00020008450) #15	ZNF783 (ENSOARG00020008393)	ZNF212 (ENSOARG00020008333) #17	ZNF282 (ENSOARG00020008265) #18	ENSOARG00020008249	ZNF398 (ENSOARG00020008134) #19	PDIA4 (ENSOARG00020008086) #21	EZH2 (ENSOARG00020007794) #22	CUL1 (ENSOARG00020007371) #23	ENSOARG00020007252 #24	ENSOARG00020006838 #24	ENSOARG00020002114	OR4X1 (ENSOARG00020002105)	ENSOARG00020002100	ENSOARG00020002092	ENSOARG00020002083	ENSOARG00020002075	TPK1 (ENSOARG00020002061) #25	NOBOX (ENSOARG00020002035) #26	ENSOARG00020002012 #27	ENSOARG00020001981 ##31	ENSOARG00020001976 ##31	ENSOARG00020001958 #31
Goat	MODERN SPECIES	23	RARRES2 (ENSCHIG00000009903)	LRRC61 (ENSCHIG00000010913) #7	ATP6V0E2 (ENSCHIG00000011623) #8	ZNF862 (ENSCHIG00000022302) #9	ENSCHIG00000012984 #10	ZNF467 (ENSCHIG00000005888) #11	ZNF746 (ENSCHIG00000015783) #14	ZNF777 (ENSCHIG00000022397) #15	ENSCHIG00000005197	ZNF212 (ENSCHIG00000015040) #17	ZNF282 (ENSCHIG00000020977) #18	ZNF398 (ENSCHIG00000008900) #19	ENSCHIG00000010635	ZNF786 (ENSCHIG00000011676) #20	PDIA4 (ENSCHIG00000020320) #21	EZH2 (ENSCHIG00000007371) #22	ENSCHIG00000025826 #23	ENSCHIG00000026016	ENSCHIG00000021740 #24	ENSCHIG00000010036 #24	TPK1 (ENSCHIG00000012810) #25	ENSCHIG00000010152 #26	ENSCHIG00000001329 #27	ENSCHIG00000025834 #28	ENSCHIG00000014478 #28	ENSCHIG00000007573 #31	ENSCHIG00000012182 #31	ENSCHIG00000010929 #32	OR2A2 (ENSCHIG00000009764) #32	ENSCHIG00000016790 #33	ENSCHIG00000018216 #28
Bovinae	ANCESTRAL SPECIES	8	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.j.a #28	ENSGT00940000153255.a.j.b.b #28	ENSGT00940000161677.c.b.k #31	ENSGT00940000153255.a.j.b.a #28	ENSGT00940000161677.c.b.l #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.a.i #28	ENSGT00940000153255.b.a.a.b ##28
American bison	MODERN SPECIES	3110	ENSBBBG00000018217	ENSBBBG00000004470	ENSBBBG00000018204	RARRES2 (ENSBBBG00000018201)	LRRC61 (ENSBBBG00000018185) #7	ATP6V0E2 (ENSBBBG00000018178) #8	ZNF862 (ENSBBBG00000018171) #9	ENSBBBG00000018148 #10	ENSBBBG00000018027	KRBA1 (ENSBBBG00000004426) #12	ENSBBBG00000017962 #14	ZNF777 (ENSBBBG00000017954) #15	ZNF282 (ENSBBBG00000008200) #18	ZNF398 (ENSBBBG00000017916) #19	PDIA4 (ENSBBBG00000004402) #21	EZH2 (ENSBBBG00000017815) #22	CUL1 (ENSBBBG00000017581) #23	ENSBBBG00000017503 #24
Bos	ANCESTRAL SPECIES	8	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.j.a #28	ENSGT00940000153255.a.j.b.b #28	ENSGT00940000161677.c.b.k #31	ENSGT00940000153255.a.j.b.a #28	ENSGT00940000161677.c.b.l #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.a.i #28	ENSGT00940000153255.b.a.a.b ##28
Bos_b	ANCESTRAL SPECIES	7	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.j.b.b #28	ENSGT00940000161677.c.b.k #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.a.i #28	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Cow	MODERN SPECIES	23	LRRC61 (ENSBTAG00000031059) #7	ATP6V0E2 (ENSBTAG00000006022) #8	ZNF862 (ENSBTAG00000039594) #9	SSPO (ENSBTAG00000008542) #10	ZNF467 (ENSBTAG00000019844) #11	KRBA1 (ENSBTAG00000010219) #12	ENSBTAG00000049343	ZNF746 (ENSBTAG00000031106) #14	ZNF777 (ENSBTAG00000002810) #15	ENSBTAG00000002445	ZNF212 (ENSBTAG00000000389) #17	ENSBTAG00000020448 #17	ZNF398 (ENSBTAG00000020445) #19	ZNF786 (ENSBTAG00000014768) #20	PDIA4 (ENSBTAG00000017143) #21	EZH2 (ENSBTAG00000009426) #22	CUL1 (ENSBTAG00000008736) #23	ENSBTAG00000052473	ENSBTAG00000000719 #24	TPK1 (ENSBTAG00000017676) #25	ENSBTAG00000054424 #25	NOBOX (ENSBTAG00000009832) #26	ARHGEF5 (ENSBTAG00000001815) #27	OR2A62 (ENSBTAG00000050364) #28	OR2A7 (ENSBTAG00000020364) #31	OR2A13 (ENSBTAG00000049625) #32	ENSBTAG00000055202 #33	ENSBTAG00000052051 #28	ENSBTAG00000053058 ##28	OR2A25 (ENSBTAG00000049531) #34	OR2A5 (ENSBTAG00000051510) #35
Hybrid Bos Indicus	MODERN SPECIES	23	LRRC61 (ENSBIXG00005001391) #7	ATP6V0E2 (ENSBIXG00005012568) #8	ZNF862 (ENSBIXG00005001382) #9	ENSBIXG00005000331 #10	ZNF467 (ENSBIXG00005000273) #11	KRBA1 (ENSBIXG00005012172) #12	ZNF746 (ENSBIXG00005012120) #14	ENSBIXG00005012076	ZNF777 (ENSBIXG00005012031) #15	ZNF783 (ENSBIXG00005011998)	ZNF282 (ENSBIXG00005011919) #18	ZNF398 (ENSBIXG00005011884) #19	ZNF786 (ENSBIXG00005011847) #20	PDIA4 (ENSBIXG00005011823) #21	ENSBIXG00005006326	EZH2 (ENSBIXG00005011741) #22	CUL1 (ENSBIXG00005011500) #23	CNTNAP2 (ENSBIXG00005011304) #24	ENSBIXG00005011107 #26	ARHGEF5 (ENSBIXG00005011019) #27	ENSBIXG00005010959 #28	ENSBIXG00005000575 #31	ENSBIXG00005010917 #28	ENSBIXG00005000967 #31	ENSBIXG00005010877	ENSBIXG00005010864 #32	OR2A14 (ENSBIXG00005000956) #33	ENSBIXG00005010821 #37	TCAF1 (ENSBIXG00005010796)	ENSBIXG00005010748 ##37	TAS2R41 (ENSBIXG00005010737)
Bos_a	ANCESTRAL SPECIES	37	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000169246	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774.db #23	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.j.a #28	ENSGT00940000153255.a.j.b.b #28	ENSGT00940000153255.a.j.b.a #28	ENSGT00940000161677.c.b.l #31	ENSGT00940000153255.b.a.b.f #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.a.i #28	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Domestic yak	MODERN SPECIES	23	LRRC61 (ENSBGRG00000018154) #7	ENSBGRG00000017959	ATP6V0E2 (ENSBGRG00000017911) #8	ZNF862 (ENSBGRG00000017837) #9	ENSBGRG00000015237 #10	ENSBGRG00000015050	KRBA1 (ENSBGRG00000014965) #12	ENSBGRG00000014874 #14	ZNF777 (ENSBGRG00000014774) #15	ZNF783 (ENSBGRG00000014594)	ZNF212 (ENSBGRG00000014546) #17	ENSBGRG00000014516 #18	ZNF398 (ENSBGRG00000014268) #19	ZNF786 (ENSBGRG00000014221) #20	PDIA4 (ENSBGRG00000013991) #21	EZH2 (ENSBGRG00000013158) #22	ENSBGRG00000012528 #23	ENSBGRG00000012486	ENSBGRG00000012405	NUSAP1 (ENSBGRG00000012356)	ENSBGRG00000012317 #24	ENSBGRG00000012304	NOBOX (ENSBGRG00000011930) #26	ENSBGRG00000011825 #27	ENSBGRG00000011642 #28	ENSBGRG00000011585 #28	ENSBGRG00000011473 #32	OR2A2 (ENSBGRG00000011455) #32	OR2A14 (ENSBGRG00000011426) #33	ENSBGRG00000011357 #28	OR2A12 (ENSBGRG00000011332) ##28
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2063																EZH2 (ENSBMUG00000021283) #22
Wild yak	MODERN SPECIES	3041																ENSBMUG00000001143 #22
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Chiroptera	ANCESTRAL SPECIES	57													ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a
Microchiroptera	ANCESTRAL SPECIES	23	ENSGT00390000006479 #7	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000161603 #19	ENSGT00940000161885 #18	ENSGT00940000162364 #17	ENSGT00940000162942	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37	ENSGT01090000260044.A.b.b.d ##37	ENSGT00390000017365.b.d	ENSGT00390000017365.b.c.a
Microbat	MODERN SPECIES	988	CACNA2D1 (ENSMLUG00000007796)	HGF (ENSMLUG00000023879)	ENSMLUG00000026471	ENSMLUG00000000848	SEMA3C (ENSMLUG00000010468)	ENSMLUG00000028566 #10	KRBA1 (ENSMLUG00000011806) #12	ZNF746 (ENSMLUG00000017109) #14	ZNF777 (ENSMLUG00000017103) #15	ZNF398 (ENSMLUG00000007451) #19	ZNF282 (ENSMLUG00000010622) #18	ZNF212 (ENSMLUG00000010634) #17	ZNF783 (ENSMLUG00000010650)	ZNF786 (ENSMLUG00000000458) #20	PDIA4 (ENSMLUG00000004721) #21	EZH2 (ENSMLUG00000002498) #22	ENSMLUG00000002479 #23	ENSMLUG00000023077 #24	ENSMLUG00000025645 #24	ENSMLUG00000030106	ENSMLUG00000027826 #24	ENSMLUG00000001624 #24
Greater horseshoe bat	MODERN SPECIES	18	REPIN1 (ENSRFEG00010020585)	RARRES2 (ENSRFEG00010020598)	LRRC61 (ENSRFEG00010020622) #7	ENSRFEG00010005930	ATP6V0E2 (ENSRFEG00010005952) #8	ZNF862 (ENSRFEG00010005988) #9	ZNF467 (ENSRFEG00010006038) #11	KRBA1 (ENSRFEG00010006090) #12	ZNF746 (ENSRFEG00010006258) #14	ZNF777 (ENSRFEG00010006375) #15	ZNF398 (ENSRFEG00010006414) #19	ZNF282 (ENSRFEG00010006463) #18	ZNF425 (ENSRFEG00010006524)	ZNF786 (ENSRFEG00010006564) #20	PDIA4 (ENSRFEG00010006612) #21	EZH2 (ENSRFEG00010006742) #22	CUL1 (ENSRFEG00010006925) #23	CNTNAP2 (ENSRFEG00010007243) #24	TPK1 (ENSRFEG00010007533) #25	NOBOX (ENSRFEG00010007684) #26	ARHGEF5 (ENSRFEG00010007773) #27	OR2A14 (ENSRFEG00010007924) #33	ENSRFEG00010007939 #34	ENSRFEG00010007958 #34	OR2A5 (ENSRFEG00010007967) #35	ENSRFEG00010007985	ENSRFEG00010007997 #37	ENSRFEG00010008045 ##37	ENSRFEG00010008059 ##37	TCAF1 (ENSRFEG00010008087)	ENSRFEG00010008135
Megabat	MODERN SPECIES	1268															PDIA4 (ENSPVAG00000009109) #21	EZH2 (ENSPVAG00000009107) #22	CUL1 (ENSPVAG00000009106) #23
Equus	ANCESTRAL SPECIES	49	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000161677.d ##31	ENSGT00940000153255.a #28	ENSGT01100000267066	ENSGT00940000153255.b.a.b.d.b.a #32	ENSGT00940000153255.b.a.a.a.s.a #33	ENSGT00940000153255.b.a.b.d.a #32	ENSGT00940000153255.b.a.a.a.s.b #33	ENSGT00940000153255.b.a.a.a.t #33	ENSGT01090000260044.A.b.b.c.a.a.a #37	ENSGT01090000260044.A.b.b.c.a.b ##37
Horse	MODERN SPECIES	25	REPIN1 (ENSECAG00000016405)	ENSECAG00000033054	ENSECAG00000050871 #8	ZNF862 (ENSECAG00000014299) #9	ZNF467 (ENSECAG00000034239) #11	KRBA1 (ENSECAG00000014807) #12	ZNF746 (ENSECAG00000014689) #14	ZNF777 (ENSECAG00000013895) #15	ZNF783 (ENSECAG00000013460)	ZNF212 (ENSECAG00000012758) #17	ZNF282 (ENSECAG00000036335) #18	ZNF398 (ENSECAG00000010503) #19	ENSECAG00000047145	ZNF425 (ENSECAG00000009899)	PDIA4 (ENSECAG00000008848) #20	EZH2 (ENSECAG00000021529) #22	CUL1 (ENSECAG00000009606) #23	CNTNAP2 (ENSECAG00000008838) #24	ENSECAG00000036562	TPK1 (ENSECAG00000003882) #25	NOBOX (ENSECAG00000003123) #26	ARHGEF5 (ENSECAG00000021664) #27	ENSECAG00000031956	OR2A75 (ENSECAG00000048417) #32	ENSECAG00000048437 #33	ENSECAG00000036799 #33	ENSECAG00000031891 #37	ENSECAG00000038382 ##37	ENSECAG00000035968 ##37	TCAF1 (ENSECAG00000047772)	ENSECAG00000014110
Donkey	MODERN SPECIES		LRRC61 (ENSEASG00005027493) #7	ENSEASG00005020640	ENSEASG00005027394 #8	ZNF862 (ENSEASG00005020646) #9	ENSEASG00005026020 #10	ZNF467 (ENSEASG00005020669) #11	KRBA1 (ENSEASG00005020679) #12	ZNF746 (ENSEASG00005032972) #14	ZNF777 (ENSEASG00005008991) #15	ZNF783 (ENSEASG00005008998)	ZNF212 (ENSEASG00005027557) #17	ZNF282 (ENSEASG00005009003) #18	ZNF398 (ENSEASG00005009006) #19	ZNF425 (ENSEASG00005035571)	ENSEASG00005009014 #21	EZH2 (ENSEASG00005009027) #22	CUL1 (ENSEASG00005009031) #23	CNTNAP2 (ENSEASG00005009052) #24	TPK1 (ENSEASG00005009130) #25	NOBOX (ENSEASG00005009137) #26	ARHGEF5 (ENSEASG00005009148) #27	ENSEASG00005009151 ##31	ENSEASG00005035335 #28	ENSEASG00005009158	ENSEASG00005032160 #32	ENSEASG00005029434 #32	ENSEASG00005038586 #32	ENSEASG00005027763 #32	ENSEASG00005026223 #32	ENSEASG00005035512 #32	ENSEASG00005036257 #33
Carnivora	ANCESTRAL SPECIES	15	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37
Caniformia	ANCESTRAL SPECIES	11	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000162476.b #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.c.a.a #37
Ursidae	ANCESTRAL SPECIES	44	ENSGT00510000050353	ENSGT00940000162476.b #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.o #28	ENSGT00940000153255.a.p #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Giant Panda	MODERN SPECIES		RARRES2 (ENSAMEG00000002454)	ENSAMEG00000026192	ENSAMEG00000024591	ATP6V0E2 (ENSAMEG00000002473) #8	ZNF862 (ENSAMEG00000002475) #9	ZNF467 (ENSAMEG00000023611) #11	KRBA1 (ENSAMEG00000002661) #12	ENSAMEG00000030579 #14	ENSAMEG00000002670 #14	ZNF777 (ENSAMEG00000002678) #15	ZNF783 (ENSAMEG00000030278)	ZNF212 (ENSAMEG00000002698) #17	ZNF282 (ENSAMEG00000002702) #18	ZNF398 (ENSAMEG00000002726) #19	PDIA4 (ENSAMEG00000002743) #21	EZH2 (ENSAMEG00000002791) #22	CUL1 (ENSAMEG00000002865) #23	ENSAMEG00000004402 #24	ENSAMEG00000001968 #24	TPK1 (ENSAMEG00000008626) #25	NOBOX (ENSAMEG00000029171) #26	ENSAMEG00000008633 #27	ENSAMEG00000025667 #28	ENSAMEG00000023556 #28	ENSAMEG00000030252 #31	ENSAMEG00000023705 #33	OR2A12 (ENSAMEG00000030635) ##28	OR2A25 (ENSAMEG00000028428) #34	OR2A5 (ENSAMEG00000030769) #35	OR6B1 (ENSAMEG00000018872) #36	ENSAMEG00000008661 #37
Ursus	ANCESTRAL SPECIES	35	ENSGT00510000050353	ENSGT00940000162476.b #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00940000155052.e.b.b.c.b	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.o #28	ENSGT00940000153255.a.p #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
American black bear	MODERN SPECIES	4150																EZH2 (ENSUAMG00000022208) #22	CUL1 (ENSUAMG00000022268) #23
Polar bear	MODERN SPECIES	205	ENSUMAG00000011043	LRRC61 (ENSUMAG00000011048) #7	ZNF862 (ENSUMAG00000011057) #9	ENSUMAG00000011270	KRBA1 (ENSUMAG00000011277) #12	ENSUMAG00000011297 #14	ENSUMAG00000011300 #17	ENSUMAG00000011322	ZNF212 (ENSUMAG00000011327) #17	ENSUMAG00000011335 #18	ENSUMAG00000011343 #19	ZNF425 (ENSUMAG00000011351)	ENSUMAG00000011353 #20	PDIA4 (ENSUMAG00000011369) #21	ENSUMAG00000011460	EZH2 (ENSUMAG00000011506) #22	CUL1 (ENSUMAG00000011524) #23	ENSUMAG00000011538	ENSUMAG00000011547 #24	TPK1 (ENSUMAG00000011559) #25	ENSUMAG00000011571	NOBOX (ENSUMAG00000011584) #26	ENSUMAG00000011595 #27	ENSUMAG00000011600 #28	ENSUMAG00000011605 #28	ENSUMAG00000011607 #31	OR2A2 (ENSUMAG00000011611) #32	OR2A14 (ENSUMAG00000011617) #33	OR2A12 (ENSUMAG00000011622) ##28	OR2A25 (ENSUMAG00000011627) #34	OR6B1 (ENSUMAG00000011630) #36
Mustelinae	ANCESTRAL SPECIES	79	ENSGT00940000162476.b #8	ENSGT00940000162620 #9	ENSGT00940000155829.i #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24
American mink	MODERN SPECIES	66	ENSNVIG00000002382	VA0E2 (ENSNVIG00000002393) #8	ENSNVIG00000002547 #10	ENSNVIG00000003661	KRBA1 (ENSNVIG00000003678) #12	ENSNVIG00000003717	ZNF746 (ENSNVIG00000003735) #14	ZNF777 (ENSNVIG00000003785) #15	ENSNVIG00000003805	ZNF212 (ENSNVIG00000003818) #17	ENSNVIG00000003824 #18	ZNF398 (ENSNVIG00000003833) #19	ZNF786 (ENSNVIG00000003856) #20	ENSNVIG00000003878	PDIA4 (ENSNVIG00000003899) #21	EZH2 (ENSNVIG00000003950) #22	CUL1 (ENSNVIG00000004212) #23	CNTNAP2 (ENSNVIG00000004294) #24
Ferret	MODERN SPECIES	331															CUL1 (ENSMPUG00000007262) #23	EZH2 (ENSMPUG00000007249) #22	ENSMPUG00000007239	ENSMPUG00000007204 #24	ENSMPUG00000020041	ENSMPUG00000007191 #24	ENSMPUG00000007128	ENSMPUG00000007115	TPK1 (ENSMPUG00000007104) #25	NOBOX (ENSMPUG00000007079) #26	ENSMPUG00000007068	ARHGEF5 (ENSMPUG00000007058) #27	ENSMPUG00000007048 #28	ENSMPUG00000020040 #28	ENSMPUG00000020038 #31	OR2A14 (ENSMPUG00000007040) #33	OR2A12 (ENSMPUG00000020037) ##28
Canidae	ANCESTRAL SPECIES	49									ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.l #28	ENSGT00940000153255.a.k #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.b #32	ENSGT00940000153255.b.a.b.a #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35
Red fox	MODERN SPECIES	150															PDIA4 (ENSVVUG00000016625) #21	EZH2 (ENSVVUG00000016571) #22	CUL1 (ENSVVUG00000016560) #23	ENSVVUG00000016553	ENSVVUG00000016540 #24	ENSVVUG00000016419 #24	ENSVVUG00000016400	ENSVVUG00000016377	TPK1 (ENSVVUG00000016355) #25	NOBOX (ENSVVUG00000016346) #26	ARHGEF5 (ENSVVUG00000016332) #27	ENSVVUG00000016326 #28	ENSVVUG00000016324 #28	ENSVVUG00000016318 #31	OR2A2 (ENSVVUG00000016308) #32	ENSVVUG00000016289 #32	OR2A14 (ENSVVUG00000016279) #33
Canis_lupus	ANCESTRAL SPECIES	42							ENSGT00390000000706.d	ENSGT00940000162104	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000155961.c.a	ENSGT00940000157738 #21	ENSGT00390000012178.g.b.a.b.d.b.b	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.l #28	ENSGT00940000153255.a.k #28	ENSGT00940000161677.c.b #31	ENSGT00940000153255.b.a.b.b #32	ENSGT00940000153255.b.a.b.a #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01100000264167.a
Dingo	MODERN SPECIES	389					ENSCAFG00020020411	PKD1L1 (ENSCAFG00020020412)	TNS3 (ENSCAFG00020020437)	IGFBP3 (ENSCAFG00020020474)	IGFBP1 (ENSCAFG00020020480)	ADCY1 (ENSCAFG00020020482)	ENSCAFG00020020497	ENSCAFG00020020500	ENSCAFG00020020504	PDIA4 (ENSCAFG00020020510) #21	ENSCAFG00020020512	EZH2 (ENSCAFG00020020525) #22	CUL1 (ENSCAFG00020020532) #23	ENSCAFG00020020541	ENSCAFG00020020544	ENSCAFG00020020560 #24	ENSCAFG00020020580 #25	ARHGEF5 (ENSCAFG00020020593) #27	ENSCAFG00020020605 #28	ENSCAFG00020020613 #28	ENSCAFG00020020615 #31	OR2A2 (ENSCAFG00020020621) #32	ENSCAFG00020020627 #32	ENSCAFG00020020633 #33	OR2A12 (ENSCAFG00020020638) ##28	OR2A25 (ENSCAFG00020020641) #34	OR2A5 (ENSCAFG00020020645) #35
Dog	MODERN SPECIES	7						ENSCAFG00845009577	ENSCAFG00845009802	TNS3 (ENSCAFG00845010444)	IGFBP3 (ENSCAFG00845011212)	IGFBP1 (ENSCAFG00845011343)	ENSCAFG00845011766	ENSCAFG00845011832 #21	ENSCAFG00845011896	ENSCAFG00845011934	ENSCAFG00845011952	EZH2 (ENSCAFG00845012096) #22	CUL1 (ENSCAFG00845012432) #23	CNTNAP2 (ENSCAFG00845012836) #24	ENSCAFG00845012954	TPK1 (ENSCAFG00845013044) #25	ENSCAFG00845013135	NOBOX (ENSCAFG00845013154) #26	ARHGEF5 (ENSCAFG00845013215) #27	OR2A9B (ENSCAFG00845013318) #28	OR2A9 (ENSCAFG00845013334) #28	OR2A7 (ENSCAFG00845013349) #31	OR2A58 (ENSCAFG00845013360) #32	OR2A13 (ENSCAFG00845013372) #32	OR2A14 (ENSCAFG00845013380) #33	OR2A12 (ENSCAFG00845013394) ##28	OR2A25 (ENSCAFG00845013410) #34
Felidae	ANCESTRAL SPECIES	13	ENSGT00390000006479 #7	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.q #28	ENSGT00940000153255.a.r #28	ENSGT00940000161677.c.b #31	ENSGT00930000152966	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Cat	MODERN SPECIES	1	RARRES2 (ENSFCAG00000035558)	LRRC61 (ENSFCAG00000011436) #7	ENSFCAG00000040371	ATP6V0E2 (ENSFCAG00000050751) #8	ZNF862 (ENSFCAG00000011434) #9	ZNF467 (ENSFCAG00000011431) #11	KRBA1 (ENSFCAG00000011430) #12	ZNF746 (ENSFCAG00000007554) #14	ZNF777 (ENSFCAG00000007553) #15	ZNF783 (ENSFCAG00000046463)	ZNF212 (ENSFCAG00000022357) #17	ZNF282 (ENSFCAG00000007550) #18	ZNF398 (ENSFCAG00000007549) #19	ZNF786 (ENSFCAG00000042138) #20	PDIA4 (ENSFCAG00000008620) #21	EZH2 (ENSFCAG00000008618) #22	CUL1 (ENSFCAG00000008615) #23	ENSFCAG00000050783	CNTNAP2 (ENSFCAG00000040617) #24	ENSFCAG00000050894	TPK1 (ENSFCAG00000025153) #25	NOBOX (ENSFCAG00000004352) #26	ARHGEF5 (ENSFCAG00000004351) #27	ENSFCAG00000044758 #28	ENSFCAG00000043770 #28	ENSFCAG00000040296 #31	ENSFCAG00000043405	OR2A2 (ENSFCAG00000022619) #32	OR2A14 (ENSFCAG00000045096) #33	OR2A12 (ENSFCAG00000045668) ##28	OR2A25 (ENSFCAG00000042035) #34
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000006479 #7	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.q #28	ENSGT00940000153255.a.r #28	ENSGT00940000161677.c.b #31	ENSGT00930000152966	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
Tiger	MODERN SPECIES	338	RARRES2 (ENSPTIG00000009267)	ATP6V0E2 (ENSPTIG00000009231) #8	ZNF862 (ENSPTIG00000009174) #9	ENSPTIG00000008972	KRBA1 (ENSPTIG00000008911) #12	ENSPTIG00000008895 #14	ZNF777 (ENSPTIG00000008886) #15	ZNF783 (ENSPTIG00000008870)	ZNF212 (ENSPTIG00000008850) #17	ENSPTIG00000008840 #18	ZNF398 (ENSPTIG00000008826) #19	ZNF425 (ENSPTIG00000008818)	ZNF786 (ENSPTIG00000008804) #20	ENSPTIG00000008800	PDIA4 (ENSPTIG00000008784) #21	EZH2 (ENSPTIG00000008662) #22	CUL1 (ENSPTIG00000008585) #23	CNTNAP2 (ENSPTIG00000008524) #24	ENSPTIG00000008498	TPK1 (ENSPTIG00000008481) #25	NOBOX (ENSPTIG00000008443) #26	ENSPTIG00000008429 #27	ENSPTIG00000008741 #28	ENSPTIG00000008409 #28	ENSPTIG00000008737 #31	OR2A2 (ENSPTIG00000008400) #32	OR2A14 (ENSPTIG00000008726) #33	OR2A12 (ENSPTIG00000008718) ##28	OR2A25 (ENSPTIG00000008712) #34	OR2A5 (ENSPTIG00000008706) #35	OR6B1 (ENSPTIG00000008702) #36
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000006479 #7	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000163692	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a.q #28	ENSGT00940000153255.a.r #28	ENSGT00940000161677.c.b #31	ENSGT00930000152966	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.a.b ##28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.b #35	ENSGT01090000260024.A.a.b.a.b.a.b #36
lion	MODERN SPECIES	2	LRRC61 (ENSPLOG00000001466) #7	ENSPLOG00000001455	ATP6V0E2 (ENSPLOG00000001446) #8	ZNF862 (ENSPLOG00000001433) #9	ZNF467 (ENSPLOG00000001179) #11	KRBA1 (ENSPLOG00000001127) #12	ZNF746 (ENSPLOG00000001085) #14	ZNF777 (ENSPLOG00000001070) #15	ENSPLOG00000001053	ZNF212 (ENSPLOG00000001035) #17	ZNF282 (ENSPLOG00000001016) #18	ZNF398 (ENSPLOG00000000990) #19	ZNF425 (ENSPLOG00000000977)	ZNF786 (ENSPLOG00000000966) #20	PDIA4 (ENSPLOG00000000944) #21	EZH2 (ENSPLOG00000000853) #22	CUL1 (ENSPLOG00000000708) #23	ENSPLOG00000000610 #24	ENSPLOG00000000595 #24	TPK1 (ENSPLOG00000000544) #25	NOBOX (ENSPLOG00000000506) #26	ENSPLOG00000000408 #27	ENSPLOG00000000376 #28	ENSPLOG00000000364 #28	ENSPLOG00000000356 #31	ENSPLOG00000000345	OR2A2 (ENSPLOG00000000335) #32	OR2A14 (ENSPLOG00000000326) #33	OR2A12 (ENSPLOG00000000320) ##28	OR2A25 (ENSPLOG00000000310) #34	OR2A5 (ENSPLOG00000000301) #35
leopard	MODERN SPECIES	23	LRRC61 (ENSPPRG00000019060) #7	ATP6V0E2 (ENSPPRG00000020377) #8	ZNF862 (ENSPPRG00000020422) #9	ZNF467 (ENSPPRG00000020845) #11	ZNF746 (ENSPPRG00000021087) #14	ZNF777 (ENSPPRG00000021114) #15	ZNF783 (ENSPPRG00000021148)	ZNF212 (ENSPPRG00000021175) #17	ZNF282 (ENSPPRG00000021214) #18	ENSPPRG00000021240 #19	ENSPPRG00000021266 #19	ZNF425 (ENSPPRG00000021296)	ENSPPRG00000019071	ENSPPRG00000021368	PDIA4 (ENSPPRG00000021383) #21	EZH2 (ENSPPRG00000021506) #22	CUL1 (ENSPPRG00000021789) #23	CNTNAP2 (ENSPPRG00000021920) #24	ENSPPRG00000021978	ENSPPRG00000022002	TPK1 (ENSPPRG00000022033) #25	NOBOX (ENSPPRG00000022086) #26	ENSPPRG00000022140 #27	ENSPPRG00000019094 #28	ENSPPRG00000022167 #28	ENSPPRG00000019111 #31	ENSPPRG00000019126	OR2A2 (ENSPPRG00000019138) #32	OR2A14 (ENSPPRG00000019150) #33	OR2A12 (ENSPPRG00000019160) ##28	OR2A25 (ENSPPRG00000019183) #34
Atlantogenata	ANCESTRAL SPECIES	111	ENSGT00510000050353	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00940000167443	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000153255.b.a.b #32	ENSGT00940000153255.b.a.a.a #33
Afrotheria	ANCESTRAL SPECIES	141	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00940000167443	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32
Tenrec	MODERN SPECIES	4820																EZH2 (ENSETEG00000020305) #22	ENSETEG00000020304 #23
Afrotheria_a	ANCESTRAL SPECIES	142	ENSGT00390000016226	ENSGT00390000006479 #7	ENSGT00940000162476 #8	ENSGT00940000162620 #9	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00390000006211 #12	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.b #24	ENSGT00940000167443	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.a #28	ENSGT00940000161677.c.a #34	ENSGT00940000153255.b.a.a.a #33	ENSGT00940000153255.b.a.b #32
Elephant	MODERN SPECIES	609	RARRES2 (ENSLAFG00000027935)	LRRC61 (ENSLAFG00000030654) #7	ATP6V0E2 (ENSLAFG00000006800) #8	ZNF862 (ENSLAFG00000026691) #9	ENSLAFG00000027842 #10	ZNF467 (ENSLAFG00000003599) #11	ENSLAFG00000005766 #12	ZNF746 (ENSLAFG00000006725) #14	ZNF777 (ENSLAFG00000006716) #15	ENSLAFG00000012382	ZNF212 (ENSLAFG00000006685) #17	ENSLAFG00000029727 #18	ZNF398 (ENSLAFG00000022335) #19	ENSLAFG00000029912 #20	PDIA4 (ENSLAFG00000028114) #21	EZH2 (ENSLAFG00000001578) #22	CUL1 (ENSLAFG00000003410) #23	ENSLAFG00000029312	ENSLAFG00000032549 #24	ENSLAFG00000030055	ENSLAFG00000005340 #24	ENSLAFG00000028271 #24	TPK1 (ENSLAFG00000006457) #25	ENSLAFG00000016016 #26	ENSLAFG00000020832 #27	ENSLAFG00000027434 #28	ENSLAFG00000028698 #28	ENSLAFG00000028027 #28	ENSLAFG00000026629 #28	ENSLAFG00000010565 #28	ENSLAFG00000021933 #34
Hyrax	MODERN SPECIES	3266																EZH2 (ENSPCAG00000016179) #22	CUL1 (ENSPCAG00000016054) #23
Xenarthra	ANCESTRAL SPECIES	542									ENSGT00940000164953 #16	ENSGT00940000162942	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000162604 #20	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23
Armadillo	MODERN SPECIES	4728								ENSDNOG00000031181 #16	ZNF783 (ENSDNOG00000038016)	ZNF212 (ENSDNOG00000008381) #17	ZNF282 (ENSDNOG00000008361) #18	ZNF398 (ENSDNOG00000038814) #19	ZNF786 (ENSDNOG00000048166) #20	ENSDNOG00000048242	PDIA4 (ENSDNOG00000014782) #21	EZH2 (ENSDNOG00000003130) #22	CUL1 (ENSDNOG00000012074) #23	ENSDNOG00000036777	ENSDNOG00000038151 #24	ENSDNOG00000042557 #24	ENSDNOG00000039760
Sloth	MODERN SPECIES	3579																EZH2 (ENSCHOG00000013009) #22	ENSCHOG00000012962 #23
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000155829 #10	ENSGT00940000162497 #11	ENSGT00940000166158	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000164953 #16	ENSGT00940000162942.f	ENSGT00940000162364 #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000164664	ENSGT01100000263521.a.a.b.b.k	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01090000260044.A.b.b.c.a.d #37	ENSGT00390000017365.b.e	ENSGT01090000260044.A.b.b.c.a.c #37	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.b.a.c #32	ENSGT00940000161677.b #31	ENSGT00940000153255.a #28	ENSGT00940000161677.a #31	ENSGT00940000153255.b.a.d #32	ENSGT01090000260024.A.a.b.a.b.a.b #36	ENSGT01090000260044.A.b.b.d.a.a ##37
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000162497 #11	ENSGT00940000166158	ENSGT00390000006211 #12	ENSGT01090000260819	ENSGT00940000161747 #14	ENSGT00940000155153.B #15	ENSGT00940000162942.f	ENSGT00940000162364.c.a #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000154650.d.f.c	ENSGT00940000162604 #20	ENSGT00940000164664	ENSGT01100000263521.a.a.b.b.k	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00650000093445 #26	ENSGT01090000260044.A.b.b.c.a.d #37	ENSGT00390000017365.b.e	ENSGT01090000260044.A.b.b.c.a.c #37	ENSGT01030000234571.b.b.b.a.a #27	ENSGT00940000153255.b.a.c #32	ENSGT00940000161677.b.b #31	ENSGT00940000161677.b.a #31	ENSGT00940000153255.a #28	ENSGT00940000161677.a #31	ENSGT00940000153255.b.a.d #32	ENSGT01090000260024.A.a.b.a.b.a.b #36
Diprotodontia	ANCESTRAL SPECIES	101						ENSGT00940000164953 #16	ENSGT00940000162364.c.b #17	ENSGT00940000162942.f	ENSGT00940000162364.c.a #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000154650.d.f.c	ENSGT00940000162604 #20	ENSGT01100000263521.a.a.b.b.k	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24
Diprotodontia_a	ANCESTRAL SPECIES	92				ENSGT00940000164953 #16	ENSGT00940000162364.c.b #17	ENSGT00940000162942.f	ENSGT00940000162364.c.a #17	ENSGT00940000161885 #18	ENSGT00940000161603 #19	ENSGT00940000154650.d.f.c	ENSGT00940000162604 #20	ENSGT01100000263505.b.b.a.a.a.a.a	ENSGT01030000235175	ENSGT01100000263521.a.a.b.b.k	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24
Common wonbat	MODERN SPECIES	736					ENSVURG00010016247	ENSVURG00010016256	ZNF212 (ENSVURG00010016260) #17	ENSVURG00010016265 #18	ZNF398 (ENSVURG00010016272) #19	ENSVURG00010016285	ZNF786 (ENSVURG00010016296) #20	ENSVURG00010016304	ENSVURG00010016313	ENSVURG00010016317	PDIA4 (ENSVURG00010016327) #21	EZH2 (ENSVURG00010016368) #22	CUL1 (ENSVURG00010016437) #23	ENSVURG00010016483 #24	ENSVURG00010016495 #24	ENSVURG00010016504	ENSVURG00010016507
koala	MODERN SPECIES	314			ENSPCIG00000009333 #16	ENSPCIG00000033654 #17	ENSPCIG00000035916	ZNF212 (ENSPCIG00000009331) #17	ENSPCIG00000012344 #17	ZNF398 (ENSPCIG00000012345) #19	ENSPCIG00000012347	ENSPCIG00000012348 #20	ENSPCIG00000012350	ENSPCIG00000035210	ENSPCIG00000012351	ENSPCIG00000030793	PDIA4 (ENSPCIG00000012357) #21	EZH2 (ENSPCIG00000016029) #22	CUL1 (ENSPCIG00000016028) #23	ENSPCIG00000013432	ENSPCIG00000009629
Wallaby	MODERN SPECIES	1589																EZH2 (ENSMEUG00000002137) #22
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000007287 #9	ZNF467 (ENSSHAG00000026740) #11	ENSSHAG00000032195	ENSSHAG00000004056 #12	ZNF746 (ENSSHAG00000002953) #14	ENSSHAG00000000983 #15	ENSSHAG00000030120	ZNF212 (ENSSHAG00000018312) #17	ENSSHAG00000018278 #18	ZNF398 (ENSSHAG00000018241) #19	ENSSHAG00000027367	ENSSHAG00000018192 #20	ENSSHAG00000024241	ENSSHAG00000029828	ENSSHAG00000018041 #21	EZH2 (ENSSHAG00000017743) #22	CUL1 (ENSSHAG00000017678) #23	CNTNAP2 (ENSSHAG00000017317) #24	TPK1 (ENSSHAG00000029309) #25	ENSSHAG00000013593 #26	ENSSHAG00000024573 #37	ENSSHAG00000026870 #37	ENSSHAG00000030422	ENSSHAG00000013214	ENSSHAG00000026527	ENSSHAG00000012553 #27	ENSSHAG00000003084 #32	ENSSHAG00000012300 #32	ENSSHAG00000011881 #31	ENSSHAG00000011776 #31	ENSSHAG00000011120 #28
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES	7	ENSMODG00000027603 #12	ZNF746 (ENSMODG00000002339) #14	ZNF777 (ENSMODG00000002329) #15	ENSMODG00000043340 #16	ENSMODG00000044224	ZNF212 (ENSMODG00000024223) #17	ENSMODG00000050273	ZNF282 (ENSMODG00000001987) #18	ZNF398 (ENSMODG00000001974) #19	ENSMODG00000037652	ENSMODG00000038448	ENSMODG00000001961	ENSMODG00000028242	ENSMODG00000001880	PDIA4 (ENSMODG00000001864) #21	ENSMODG00000047400 #22	ENSMODG00000001852 #22	CUL1 (ENSMODG00000001825) #23	ENSMODG00000042301	ENSMODG00000050337	ENSMODG00000049929	ENSMODG00000047683	ENSMODG00000024260	ENSMODG00000024262	ENSMODG00000037836	ENSMODG00000028415	ENSMODG00000039490	ENSMODG00000025468 #25	ENSMODG00000001675 #26	ENSMODG00000047150 #37	ENSMODG00000001667
Opossum	MODERN SPECIES	7	ZNF746 (ENSMODG00000002339) #14	ZNF777 (ENSMODG00000002329) #15	ENSMODG00000043340 #16	ENSMODG00000044224	ZNF212 (ENSMODG00000024223) #17	ENSMODG00000050273	ZNF282 (ENSMODG00000001987) #18	ZNF398 (ENSMODG00000001974) #19	ENSMODG00000037652	ENSMODG00000038448	ENSMODG00000001961	ENSMODG00000028242	ENSMODG00000001880	PDIA4 (ENSMODG00000001864) #21	ENSMODG00000047400 #22	ENSMODG00000001852 #22	CUL1 (ENSMODG00000001825) #23	ENSMODG00000042301	ENSMODG00000050337	ENSMODG00000049929	ENSMODG00000047683	ENSMODG00000024260	ENSMODG00000024262	ENSMODG00000037836	ENSMODG00000028415	ENSMODG00000039490	ENSMODG00000025468 #25	ENSMODG00000001675 #26	ENSMODG00000047150 #37	ENSMODG00000001667	ENSMODG00000045651 #37
Opossum	DUPLICATION
Opossum	MODERN SPECIES	7	CSAD (ENSMODG00000008967)	ENSMODG00000028574	ENSMODG00000037857	ENSMODG00000050935	ENSMODG00000025212	ENSMODG00000004173	ENSMODG00000042488	ENSMODG00000025209	ENSMODG00000045587	ENSMODG00000025474	ENSMODG00000050222	ENSMODG00000042214	ENSMODG00000018028	ENSMODG00000008606	ENSMODG00000025178	ENSMODG00000028145 #22	ENSMODG00000040465	ENSMODG00000028539	ENSMODG00000027554	monDomV1R1281 (ENSMODG00000046750)	monDomV1R1282 (ENSMODG00000038638)	ENSMODG00000049205	ENSMODG00000025201	monDomV1R1283 (ENSMODG00000018037)	ENSMODG00000025297	YEATS4 (ENSMODG00000050055)	FRS2 (ENSMODG00000051335)	CCT2 (ENSMODG00000020380)	ENSMODG00000025136	BEST3 (ENSMODG00000020381)	RAB3IP (ENSMODG00000020383)
Opossum	MODERN SPECIES	2	ENSMODG00000029720	KCNQ3 (ENSMODG00000001213)	ENSMODG00000001218	ENSMODG00000036744	DNAAF11 (ENSMODG00000001207)	ENSMODG00000025627	ENSMODG00000001188	TG (ENSMODG00000001154)	SLA (ENSMODG00000001164)	ENSMODG00000001114	NDRG1 (ENSMODG00000001109)	ST3GAL1 (ENSMODG00000001088)	ENSMODG00000042414	ENSMODG00000047814	ZFAT (ENSMODG00000001068)	ENSMODG00000001054 #22	KHDRBS3 (ENSMODG00000000975)	ENSMODG00000041754	ENSMODG00000040118	ENSMODG00000048341	ENSMODG00000000893	FAM135B (ENSMODG00000000885)	ENSMODG00000000768	KCNK9 (ENSMODG00000000764)	ENSMODG00000024423	TRAPPC9 (ENSMODG00000024422)	CHRAC1 (ENSMODG00000044477)	AGO2 (ENSMODG00000000748)	ENSMODG00000000707	ENSMODG00000038709	ENSMODG00000049323
Platypus	MODERN SPECIES	15	SUN3 (ENSOANG00000003087)	C7orf57 (ENSOANG00000003088)	UPP1 (ENSOANG00000003089)	ENSOANG00000003090	VWC2 (ENSOANG00000003091)	ZPBP (ENSOANG00000000287)	ENSOANG00000000288	IKZF1 (ENSOANG00000037330)	FIGNL1 (ENSOANG00000000285)	DDC (ENSOANG00000000284)	GRB10 (ENSOANG00000000283)	ENSOANG00000000282	ENSOANG00000042752	ENSOANG00000000281	PDIA4 (ENSOANG00000000280) #21	EZH2 (ENSOANG00000000279) #22	CUL1 (ENSOANG00000000278) #23	CNTNAP2 (ENSOANG00000008137) #24	TPK1 (ENSOANG00000020728) #25	SEC61G (ENSOANG00000038899)	EGFR (ENSOANG00000010685)	LANCL2 (ENSOANG00000010686)	VOPP1 (ENSOANG00000010687)	BLVRA (ENSOANG00000010688)	ENSOANG00000049855	STK17A (ENSOANG00000048615)	HECW1 (ENSOANG00000010691)	MRPL32 (ENSOANG00000045346)	PSMA2 (ENSOANG00000010697)	ENSOANG00000039786	C7orf25 (ENSOANG00000010698)
Sauria	ANCESTRAL SPECIES		ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000156004	ENSGT00940000156782.c	ENSGT00940000165844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
tuatara	MODERN SPECIES	580														RAMP3 (ENSSPUG00000014954)	PDIA4 (ENSSPUG00000014917) #21	EZH2 (ENSSPUG00000014869) #22	CUL1 (ENSSPUG00000014829) #23	ENSSPUG00000014777 #24	ENSSPUG00000014764 #24	ENSSPUG00000014756
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000165844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00390000014405	ENSGT00550000075082	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT01010000224040	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00940000161552	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996
Laterata	ANCESTRAL SPECIES	39												ENSGT00940000161026	ENSGT00390000014405	ENSGT00550000075082	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT01010000224040	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00940000161552	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996
Common wall lizard	MODERN SPECIES	3									ENSPMRG00000017662	ENSPMRG00000017659	ADCY1 (ENSPMRG00000017648)	ENSPMRG00000017643	IGFBP1 (ENSPMRG00000017638)	ENSPMRG00000017632	ENSPMRG00000017580	EZH2 (ENSPMRG00000017545) #22	ENSPMRG00000017540	CUL1 (ENSPMRG00000017503) #23	ENSPMRG00000017495	ENSPMRG00000017491	CNTNAP2 (ENSPMRG00000017475) #24	ENSPMRG00000017469	ENSPMRG00000017467	ENSPMRG00000017462	TPK1 (ENSPMRG00000017443) #25	SEC61G (ENSPMRG00000017435)	ENSPMRG00000017431	ENSPMRG00000017427	EGFR (ENSPMRG00000016632)	ENSPMRG00000016439	LANCL2 (ENSPMRG00000016434)
Argentine black and white tegu	MODERN SPECIES	84						RAMP3 (ENSSMRG00000016686)	ENSSMRG00000016687	ENSSMRG00000016688	PIGA (ENSSMRG00000016689)	CHST14 (ENSSMRG00000016690)	COPS9 (ENSSMRG00000016691)	GLRX5 (ENSSMRG00000016693)	ENSSMRG00000016696	EIF1B (ENSSMRG00000016698)	PDIA4 (ENSSMRG00000016699) #21	EZH2 (ENSSMRG00000016707) #22	CUL1 (ENSSMRG00000016711) #23	CNTNAP2 (ENSSMRG00000016715) #24	ENSSMRG00000016716	ENSSMRG00000016717	TPK1 (ENSSMRG00000016725) #25	SEC61G (ENSSMRG00000016728)	ENSSMRG00000016729
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000165844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000155225	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00390000014405	ENSGT00550000075082	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT01010000224040	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00940000161552	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000165844	ENSGT00520000055647.a.eb	ENSGT00720000108792.A	ENSGT00390000014376	ENSGT00940000157781	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00390000014405	ENSGT00940000162640	ENSGT00550000075082	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT01010000224040	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Indian cobra	MODERN SPECIES	337	ENSNNAG00000004960	ENSNNAG00000004930	VWC2 (ENSNNAG00000004907)	ENSNNAG00000004890	UPP1 (ENSNNAG00000004816)	HUS1 (ENSNNAG00000004786)	ENSNNAG00000004710	IGFBP3 (ENSNNAG00000004688)	IGFBP1 (ENSNNAG00000004640)	ADCY1 (ENSNNAG00000004526)	RAMP3 (ENSNNAG00000004486)	PIGA (ENSNNAG00000004448)	CHST14 (ENSNNAG00000004431)	GLRX5 (ENSNNAG00000004420)	PDIA4 (ENSNNAG00000004383) #21	EZH2 (ENSNNAG00000004219) #22	CUL1 (ENSNNAG00000004104) #23	ENSNNAG00000004071	CNTNAP2 (ENSNNAG00000003980) #24	TPK1 (ENSNNAG00000003924) #25	SEC61G (ENSNNAG00000003901)	ENSNNAG00000003876	ENSNNAG00000003864	ENSNNAG00000003822	ENSNNAG00000003771	ENSNNAG00000003705	LANCL2 (ENSNNAG00000003304)	VOPP1 (ENSNNAG00000003248)	BLVRA (ENSNNAG00000003231)	COA1 (ENSNNAG00000003213)	STK17A (ENSNNAG00000016944)
Elapidae_a	ANCESTRAL SPECIES	40	ENSGT00940000165844	ENSGT00520000055647.a.eb	ENSGT00720000108792.A	ENSGT00390000014376	ENSGT00940000157781	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00390000014405	ENSGT00940000162640	ENSGT00550000075082	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT01010000224040	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Blue-lipped sea krait	MODERN SPECIES	7634																EZH2 (ENSLLTG00000005678) #22
Acanthophiinae	ANCESTRAL SPECIES	41	ENSGT00940000165844	ENSGT00520000055647.a.eb	ENSGT00720000108792.A	ENSGT00390000014376	ENSGT00940000157781.q	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092.g	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00390000014405	ENSGT00940000162640	ENSGT00550000075082	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT01010000224040	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Mainland tiger snake	MODERN SPECIES	166												ENSNSUG00000012511	CHST14 (ENSNSUG00000012509)	GLRX5 (ENSNSUG00000012507)	PDIA4 (ENSNSUG00000012505) #21	EZH2 (ENSNSUG00000012095) #22	CUL1 (ENSNSUG00000012094) #23	ENSNSUG00000012093	CNTNAP2 (ENSNSUG00000012089) #24	ENSNSUG00000012088
Eastern brown snake	MODERN SPECIES	18	ENSPTXG00000009303	ZPBP (ENSPTXG00000009266)	VWC2 (ENSPTXG00000009265)	ENSPTXG00000009264	ENSPTXG00000009263	HUS1 (ENSPTXG00000009262)	TNS3 (ENSPTXG00000009252)	IGFBP3 (ENSPTXG00000009251)	IGFBP1 (ENSPTXG00000009250)	ADCY1 (ENSPTXG00000009249)	RAMP3 (ENSPTXG00000009248)	PIGA (ENSPTXG00000003514)	CHST14 (ENSPTXG00000003513)	GLRX5 (ENSPTXG00000003511)	PDIA4 (ENSPTXG00000003506) #21	EZH2 (ENSPTXG00000003497) #22	CUL1 (ENSPTXG00000003494) #23	ENSPTXG00000003491	ENSPTXG00000003489 #24	ENSPTXG00000003487 #24	ENSPTXG00000003485	ENSPTXG00000003483	TPK1 (ENSPTXG00000003481) #25	SEC61G (ENSPTXG00000003480)	ENSPTXG00000003477	ENSPTXG00000003476	EGFR (ENSPTXG00000003474)	ENSPTXG00000003473	LANCL2 (ENSPTXG00000003471)	VOPP1 (ENSPTXG00000003470)	BLVRA (ENSPTXG00000003468)
Lizard	DUPLICATION
Lizard	MODERN SPECIES	5	VWC2 (ENSACAG00000008190)	ENSACAG00000035669	ENSACAG00000043705	C7orf57 (ENSACAG00000008160)	ENSACAG00000037710	HUS1 (ENSACAG00000008129)	ENSACAG00000008102	IGFBP3 (ENSACAG00000041620)	IGFBP1 (ENSACAG00000008063)	ADCY1 (ENSACAG00000007921)	ENSACAG00000007906	ENSACAG00000026629	ENSACAG00000014188	PDIA4 (ENSACAG00000014123) #21	ENSACAG00000039286	EZH2 (ENSACAG00000013910) #22	ENSACAG00000013756 #23	ENSACAG00000036046	CNTNAP2 (ENSACAG00000013647) #24	ENSACAG00000023117	ENSACAG00000039013	TPK1 (ENSACAG00000017381) #25	SEC61G (ENSACAG00000034557)	ENSACAG00000036015	EGFR (ENSACAG00000017406)	LANCL2 (ENSACAG00000017463)	VOPP1 (ENSACAG00000043104)	ENSACAG00000034782	BLVRA (ENSACAG00000017470)	ENSACAG00000026371	COA1 (ENSACAG00000028687)
Lizard	MODERN SPECIES	1050	ENSACAG00000023970	ENSACAG00000013930	ENSACAG00000041383	ENSACAG00000036036	ENSACAG00000040585	ENSACAG00000038107	ENSACAG00000013935	ENSACAG00000028842	ENSACAG00000011725	ENSACAG00000034874	ENSACAG00000045326	ENSACAG00000017194	ENSACAG00000017196	ENSACAG00000025985	ENSACAG00000031642	ENSACAG00000041946 #22	ENSACAG00000029581	ENSACAG00000044639	ENSACAG00000035592
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00940000154136.k.b	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00940000162844	ENSGT00940000165844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000162844	ENSGT00940000165844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b.f	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b.b.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Emydidae	ANCESTRAL SPECIES	61	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b.e	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b.a	ENSGT00390000001347.q.b.b.a	ENSGT00390000001347.q.b.b.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	83	ENSTMTG00000006467	ENSTMTG00000006454	ENSTMTG00000006415	ENSTMTG00000006403	ENSTMTG00000006261	ENSTMTG00000006227	ENSTMTG00000006184	ENSTMTG00000006163	ENSTMTG00000006129	ENSTMTG00000006040	ENSTMTG00000006019	ENSTMTG00000006006	ENSTMTG00000005869	ENSTMTG00000005839	ENSTMTG00000005820 #21	ENSTMTG00000004950 #22	ENSTMTG00000004852 #23	ENSTMTG00000004576 #24	ENSTMTG00000004398 #25	ENSTMTG00000004379	ENSTMTG00000004364	ENSTMTG00000004356	ENSTMTG00000004312	ENSTMTG00000004305	ENSTMTG00000004265	ENSTMTG00000004237	ENSTMTG00000004213	ENSTMTG00000004185	ENSTMTG00000004163	ENSTMTG00000003511	ENSTMTG00000003402
Three-toed box turtle	MODERN SPECIES	84	ENSTMTG00000014833	ENSTMTG00000014806	ENSTMTG00000014702	ENSTMTG00000014663	ENSTMTG00000014628	ENSTMTG00000014601	ENSTMTG00000014597	ENSTMTG00000008376	ENSTMTG00000008366	ENSTMTG00000008357	ENSTMTG00000008351	ENSTMTG00000008263	ENSTMTG00000008245	ENSTMTG00000008235	ENSTMTG00000008202 #21	ENSTMTG00000007379 #22	ENSTMTG00000007260 #23	ENSTMTG00000007060 #24	ENSTMTG00000007024 #25	ENSTMTG00000007014	ENSTMTG00000007007	ENSTMTG00000006988	ENSTMTG00000006928	ENSTMTG00000006912	ENSTMTG00000006895	ENSTMTG00000006875	ENSTMTG00000006843	COA1 (ENSTMTG00000006825)	ENSTMTG00000006817	ENSTMTG00000006742
painted turtle	MODERN SPECIES	2378	SPATA48 (ENSCPBG00000016481)	ENSCPBG00000016484	VWC2 (ENSCPBG00000016488)	ABCA13 (ENSCPBG00000016499)	UPP1 (ENSCPBG00000016519)	C7orf57 (ENSCPBG00000016528)	SUN3 (ENSCPBG00000016533)	HUS1 (ENSCPBG00000016536)	TNS3 (ENSCPBG00000016552)	IGFBP3 (ENSCPBG00000016603)	IGFBP1 (ENSCPBG00000016607)	ADCY1 (ENSCPBG00000016626)	RAMP3 (ENSCPBG00000016642)	ENSCPBG00000016643	PDIA4 (ENSCPBG00000016646) #21	EZH2 (ENSCPBG00000016655) #22	CUL1 (ENSCPBG00000016662) #23	CNTNAP2 (ENSCPBG00000016666) #24	ENSCPBG00000016674	ENSCPBG00000016676
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000156782.c	ENSGT00940000165844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b.f	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b.b.b	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Goode s thornscrub tortoise	MODERN SPECIES	11	VWC2 (ENSGEVG00005011984)	ABCA13 (ENSGEVG00005011550)	UPP1 (ENSGEVG00005011490)	C7orf57 (ENSGEVG00005011371)	SUN3 (ENSGEVG00005011310)	HUS1 (ENSGEVG00005011281)	ENSGEVG00005011121	IGFBP3 (ENSGEVG00005011048)	IGFBP1 (ENSGEVG00005011005)	ENSGEVG00005010933	ENSGEVG00005010864	RAMP3 (ENSGEVG00005010786)	ENSGEVG00005010750	ENSGEVG00005010727	PDIA4 (ENSGEVG00005010704) #21	EZH2 (ENSGEVG00005010618) #22	CUL1 (ENSGEVG00005010108) #23	CNTNAP2 (ENSGEVG00005009611) #24	TPK1 (ENSGEVG00005009414) #25	SEC61G (ENSGEVG00005009381)	ENSGEVG00005009320	ENSGEVG00005009283	EGFR (ENSGEVG00005008912)	LANCL2 (ENSGEVG00005008758)	BLVRA (ENSGEVG00005008740)	VOPP1 (ENSGEVG00005008715)	STK17A (ENSGEVG00005008698)	COA1 (ENSGEVG00005008672)	HECW1 (ENSGEVG00005008218)	MRPL32 (ENSGEVG00005008121)	PSMA2 (ENSGEVG00005008107)
Abingdon island giant tortoise	MODERN SPECIES	845																EZH2 (ENSCABG00000021426) #22	CUL1 (ENSCABG00000021420) #23	ENSCABG00000021418
Chinese turtle	MODERN SPECIES	817															PDIA4 (ENSPSIG00000014524) #21	EZH2 (ENSPSIG00000014933) #22	CUL1 (ENSPSIG00000015484) #23	ENSPSIG00000016111 #24	ENSPSIG00000001596 #24
Archosauria	ANCESTRAL SPECIES		ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Aves	ANCESTRAL SPECIES	24	ENSGT00940000156782.c	ENSGT00940000162844	ENSGT00520000055647.a	ENSGT00720000108792.A	ENSGT00940000161703	ENSGT00940000157781	ENSGT00390000014376	ENSGT00940000161393	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00390000001347.q.b	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
African ostrich	MODERN SPECIES	954				ENSSCUG00000017287	UPP1 (ENSSCUG00000017285)	C7orf57 (ENSSCUG00000017284)	ENSSCUG00000017283	HUS1 (ENSSCUG00000017281)	TNS3 (ENSSCUG00000017272)	ENSSCUG00000017269	IGFBP1 (ENSSCUG00000017268)	ADCY1 (ENSSCUG00000017266)	RAMP3 (ENSSCUG00000017261)	PDIA4 (ENSSCUG00000017260) #21	ENSSCUG00000017259	EZH2 (ENSSCUG00000017255) #22	CUL1 (ENSSCUG00000017254) #23	ENSSCUG00000017253	ENSSCUG00000017252
Neognathae	ANCESTRAL SPECIES		ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Galloanserae	ANCESTRAL SPECIES		ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00940000155925
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000156245	ENSGT00390000017955.d	ENSGT00390000007346	ENSGT00940000153253.a	ENSGT00390000001263	ENSGT00940000154772.c.b	ENSGT00940000156325	ENSGT00950000183199.b	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00940000155925
Duck	MODERN SPECIES	10	ATXN1 (ENSAPLG00000029862)	RBM24 (ENSAPLG00000007828)	CAP2 (ENSAPLG00000007343)	FAM8A1 (ENSAPLG00000020765)	PAK1IP1 (ENSAPLG00000005241)	ENSAPLG00000005452	NFX1 (ENSAPLG00000005524)	ENSAPLG00000027178	HUS1 (ENSAPLG00000006454)	TNS3 (ENSAPLG00000006520)	IGFBP3 (ENSAPLG00000016379)	IGFBP1 (ENSAPLG00000025569)	ADCY1 (ENSAPLG00000001037)	RAMP3 (ENSAPLG00000023187)	PDIA4 (ENSAPLG00000010645) #21	EZH2 (ENSAPLG00000010543) #22	CUL1 (ENSAPLG00000010478) #23	CNTNAP2 (ENSAPLG00000010463) #24	ENSAPLG00000022224	ENSAPLG00000017666	TPK1 (ENSAPLG00000002852) #25	ENSAPLG00000021755	SEC61G (ENSAPLG00000002944)	EGFR (ENSAPLG00000002987)	LANCL2 (ENSAPLG00000003579)	VOPP1 (ENSAPLG00000018488)	BLVRA (ENSAPLG00000003819)	ENSAPLG00000026019	STK17A (ENSAPLG00000003875)	HECW1 (ENSAPLG00000004015)	ENSAPLG00000029678
Pink-footed goose	MODERN SPECIES	167													ENSABRG00000019094	RAMP3 (ENSABRG00000019091)	PDIA4 (ENSABRG00000019083) #21	EZH2 (ENSABRG00000019057) #22	CUL1 (ENSABRG00000019043) #23	CNTNAP2 (ENSABRG00000017791) #24
Phasianidae	ANCESTRAL SPECIES	1	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116
Japanese quail	MODERN SPECIES	11	ENSCJPG00005006434	ENSCJPG00005006429	ENSCJPG00005006427	ENSCJPG00005006420	AMPH (ENSCJPG00005006395)	VPS41 (ENSCJPG00005006272)	POU6F2 (ENSCJPG00005006245)	YAE1 (ENSCJPG00005006226)	ENSCJPG00005006220	RALA (ENSCJPG00005006219)	CDK13 (ENSCJPG00005006217)	MPLKIP (ENSCJPG00005006216)	SUGCT (ENSCJPG00005006209)	INHBA (ENSCJPG00005006189)	GLI3 (ENSCJPG00005006179)	EZH2 (ENSCJPG00005006124) #22	CUL1 (ENSCJPG00005006103) #23	CNTNAP2 (ENSCJPG00005000658) #24	TPK1 (ENSCJPG00005000332) #25	C7orf25 (ENSCJPG00005000320)	PSMA2 (ENSCJPG00005000303)	MRPL32 (ENSCJPG00005000292)	HECW1 (ENSCJPG00005000252)	STK17A (ENSCJPG00005000239)	ENSCJPG00005000233	BLVRA (ENSCJPG00005000222)	VOPP1 (ENSCJPG00005000210)	LANCL2 (ENSCJPG00005000198)	EGFR (ENSCJPG00005000163)	SEC61G (ENSCJPG00005000142)	ENSCJPG00005000137
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722	ENSGT00940000155925	ENSGT00940000157116
Turkey	MODERN SPECIES	22								ENSMGAG00000001054	ENSMGAG00000022268	ENSMGAG00000001256	ENSMGAG00000020769	ENSMGAG00000001202	ENSMGAG00000022584	ENSMGAG00000001538	PDIA4 (ENSMGAG00000001335) #21	EZH2 (ENSMGAG00000001370) #22	CUL1 (ENSMGAG00000001436) #23	CNTNAP2 (ENSMGAG00000001546) #24	TPK1 (ENSMGAG00000001560) #25	ENSMGAG00000001792	ENSMGAG00000017931	SLC12A7 (ENSMGAG00000001576)	TRIP13 (ENSMGAG00000001806)	BRD9 (ENSMGAG00000001853)	TPPP (ENSMGAG00000001895)	ENSMGAG00000001943	ENSMGAG00000001949	ENSMGAG00000002050	ENSMGAG00000002069	ADNP2 (ENSMGAG00000002126)	ENSMGAG00000002129
Chicken	MODERN SPECIES	11	SLC9A3 (ENSGALG00010007655)	TPPP (ENSGALG00010007624)	BRD9 (ENSGALG00010007580)	TRIP13 (ENSGALG00010007567)	SLC12A7 (ENSGALG00010007521)	NFX1 (ENSGALG00010007479)	ENSGALG00010007118	HUS1 (ENSGALG00010006912)	ENSGALG00010008452	TNS3 (ENSGALG00010008448)	IGFBP3 (ENSGALG00010008429)	IGFBP1 (ENSGALG00010008417)	ADCY1 (ENSGALG00010008388)	RAMP3 (ENSGALG00010008362)	PDIA4 (ENSGALG00010008340) #21	EZH2 (ENSGALG00010008330) #22	CUL1 (ENSGALG00010008300) #23	ENSGALG00010008281	ENSGALG00010008269	CNTNAP2 (ENSGALG00010008264) #24	ENSGALG00010008256	ENSGALG00010008253	TPK1 (ENSGALG00010008248) #25	ENSGALG00010007213	ENSGALG00010007409	SEC61G (ENSGALG00010007401)	EGFR (ENSGALG00010007381)	LANCL2 (ENSGALG00010007204)	VOPP1 (ENSGALG00010007183)	ENSGALG00010007145	BLVRA (ENSGALG00010007133)
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00940000158616	ENSGT01030000234531.C	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00940000158616	ENSGT01030000234531.C	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Golden eagle	MODERN SPECIES	19	ENSACCG00020003247	ENSACCG00020003259	TOPBP1 (ENSACCG00020003275)	CDV3 (ENSACCG00020003374)	BFSP2 (ENSACCG00020003437)	ENSACCG00020003466	NPHP3 (ENSACCG00020003486)	UBA5 (ENSACCG00020003580)	ACAD11 (ENSACCG00020003611)	ACKR4 (ENSACCG00020003643)	DNAJC13 (ENSACCG00020003697)	ENSACCG00020003827	ENSACCG00020003862	CPNE4 (ENSACCG00020003898)	PDIA4 (ENSACCG00020003916) #21	EZH2 (ENSACCG00020003954) #22	CUL1 (ENSACCG00020003972) #23	CNTNAP2 (ENSACCG00020004149) #24	TPK1 (ENSACCG00020004314) #25	SEC61G (ENSACCG00020004321)	ENSACCG00020004331	EGFR (ENSACCG00020004341)	LANCL2 (ENSACCG00020004351)	VOPP1 (ENSACCG00020004361)	BLVRA (ENSACCG00020004370)	COA1 (ENSACCG00020004380)	STK17A (ENSACCG00020004387)	HECW1 (ENSACCG00020004403)	MRPL32 (ENSACCG00020004436)	PSMA2 (ENSACCG00020004444)	C7orf25 (ENSACCG00020004448)
Kakapo	MODERN SPECIES		SACM1L (ENSSHBG00005003481)	SNRPD1 (ENSSHBG00005003518)	SLC6A20 (ENSSHBG00005003531)	LZTFL1 (ENSSHBG00005003574)	ENSSHBG00005003595	NFX1 (ENSSHBG00005003734)	ENSSHBG00005004278	HUS1 (ENSSHBG00005004285)	TNS3 (ENSSHBG00005004318)	IGFBP3 (ENSSHBG00005004372)	IGFBP1 (ENSSHBG00005004376)	ENSSHBG00005004383	ENSSHBG00005004393	RAMP3 (ENSSHBG00005004397)	PDIA4 (ENSSHBG00005004401) #21	EZH2 (ENSSHBG00005004420) #22	CUL1 (ENSSHBG00005004427) #23	CNTNAP2 (ENSSHBG00005004659) #24	TPK1 (ENSSHBG00005013825) #25	ENSSHBG00005013830	SEC61G (ENSSHBG00005013838)	ENSSHBG00005000018	ENSSHBG00005000038	ENSSHBG00005000050	LANCL2 (ENSSHBG00005000054)	VOPP1 (ENSSHBG00005000058)	BLVRA (ENSSHBG00005000063)	COA1 (ENSSHBG00005000068)	STK17A (ENSSHBG00005000074)	HECW1 (ENSSHBG00005000081)	MRPL32 (ENSSHBG00005000086)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000161910	ENSGT00940000155476	ENSGT00800000124177	ENSGT00990000210629	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00940000155574.C	ENSGT00940000156148	ENSGT00940000153845.a.b	ENSGT00390000009163	ENSGT00940000153814.a	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Great tit	MODERN SPECIES	11	SFRP4 (ENSPMJG00000011849)	EPDR1 (ENSPMJG00000011850)	STARD3NL (ENSPMJG00000011851)	MLH1 (ENSPMJG00000011852)	TRANK1 (ENSPMJG00000011854)	DCLK3 (ENSPMJG00000011855)	STAC (ENSPMJG00000011856)	ARPP21 (ENSPMJG00000011857)	ENSPMJG00000011862	CLASP2 (ENSPMJG00000011882)	UBP1 (ENSPMJG00000018015)	FBXL2 (ENSPMJG00000018016)	SUSD5 (ENSPMJG00000018017)	CRTAP (ENSPMJG00000018018)	PDIA4 (ENSPMJG00000018019) #21	EZH2 (ENSPMJG00000018023) #22	CUL1 (ENSPMJG00000018024) #23	CNTNAP2 (ENSPMJG00000018026) #24	TPK1 (ENSPMJG00000018028) #25	SEC61G (ENSPMJG00000018029)	EGFR (ENSPMJG00000018030)	LANCL2 (ENSPMJG00000018031)	VOPP1 (ENSPMJG00000018032)	BLVRA (ENSPMJG00000018033)	HECW1 (ENSPMJG00000018034)	STK17A (ENSPMJG00000018035)	COA1 (ENSPMJG00000018036)	TNS3 (ENSPMJG00000018037)	MRPL32 (ENSPMJG00000018038)	PSMA2 (ENSPMJG00000018039)	C7orf25 (ENSPMJG00000018040)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000161910	ENSGT00940000155476	ENSGT00800000124177	ENSGT00990000210629	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00940000155574.C	ENSGT00940000156148	ENSGT00940000153845.a.b	ENSGT00390000009163	ENSGT00940000153814.a	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT01030000235253.d.b	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870
Flycatcher	MODERN SPECIES	11	NME8 (ENSFALG00000002824)	SFRP4 (ENSFALG00000002829)	EPDR1 (ENSFALG00000022868)	STARD3NL (ENSFALG00000002843)	MLH1 (ENSFALG00000002856)	TRANK1 (ENSFALG00000002875)	DCLK3 (ENSFALG00000002880)	STAC (ENSFALG00000002881)	FBXL2 (ENSFALG00000004940)	ENSFALG00000004962	CLASP2 (ENSFALG00000005035)	ENSFALG00000005126	ENSFALG00000005152	ENSFALG00000005162	PDIA4 (ENSFALG00000010289) #21	EZH2 (ENSFALG00000010310) #22	CUL1 (ENSFALG00000010318) #23	CNTNAP2 (ENSFALG00000010327) #24	ENSFALG00000027812	TPK1 (ENSFALG00000028596) #25	SEC61G (ENSFALG00000023868)	EGFR (ENSFALG00000004982)	ENSFALG00000024233	LANCL2 (ENSFALG00000026759)	VOPP1 (ENSFALG00000026362)	ENSFALG00000026735	ENSFALG00000024905	ENSFALG00000023596	BLVRA (ENSFALG00000028857)	ENSFALG00000024388	ENSFALG00000025406
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT00940000161910	ENSGT00940000155476	ENSGT00800000124177	ENSGT00990000210629	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00940000155574.C	ENSGT00940000156148	ENSGT00940000153845.a.b	ENSGT00390000009163	ENSGT00940000153814.a	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT01030000235253.d.b	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Medium ground finch	MODERN SPECIES	67	EPDR1 (ENSGFOG00000012721)	STARD3NL (ENSGFOG00000012713)	MLH1 (ENSGFOG00000012634)	TRANK1 (ENSGFOG00000012619)	DCLK3 (ENSGFOG00000012614)	STAC (ENSGFOG00000012606)	ENSGFOG00000012600	ARPP21 (ENSGFOG00000012570)	ENSGFOG00000012563	CLASP2 (ENSGFOG00000012482)	UBP1 (ENSGFOG00000012440)	FBXL2 (ENSGFOG00000012436)	SUSD5 (ENSGFOG00000012435)	CRTAP (ENSGFOG00000012409)	PDIA4 (ENSGFOG00000012396) #21	EZH2 (ENSGFOG00000012383) #22	CUL1 (ENSGFOG00000012370) #23	CNTNAP2 (ENSGFOG00000012219) #24	TPK1 (ENSGFOG00000012174) #25	SEC61G (ENSGFOG00000012170)
Passeroidea	ANCESTRAL SPECIES	6	ENSGT00940000161910	ENSGT00940000155476	ENSGT00800000124177	ENSGT00990000210629	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00940000155574.C	ENSGT00940000156148	ENSGT00940000153845.a.b	ENSGT00390000009163	ENSGT00940000153814.a	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT01030000235253.d.b	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Zebra finch	MODERN SPECIES	12	EPDR1 (ENSTGUG00000025037)	STARD3NL (ENSTGUG00000005634)	MLH1 (ENSTGUG00000005654)	ENSTGUG00000020973	TRANK1 (ENSTGUG00000005694)	DCLK3 (ENSTGUG00000027434)	STAC (ENSTGUG00000001694)	ARPP21 (ENSTGUG00000001697)	ENSTGUG00000001714	CLASP2 (ENSTGUG00000001731)	UBP1 (ENSTGUG00000001752)	FBXL2 (ENSTGUG00000001755)	SUSD5 (ENSTGUG00000001761)	CRTAP (ENSTGUG00000022421)	PDIA4 (ENSTGUG00000001769) #21	EZH2 (ENSTGUG00000001770) #22	CUL1 (ENSTGUG00000001790) #23	CNTNAP2 (ENSTGUG00000001794) #24	TPK1 (ENSTGUG00000001803) #25	SEC61G (ENSTGUG00000021195)	EGFR (ENSTGUG00000001806)	LANCL2 (ENSTGUG00000020824)	VOPP1 (ENSTGUG00000001812)	BLVRA (ENSTGUG00000001814)	ENSTGUG00000021649	COA1 (ENSTGUG00000022951)	STK17A (ENSTGUG00000029061)	HECW1 (ENSTGUG00000001817)	MRPL32 (ENSTGUG00000001824)	PSMA2 (ENSTGUG00000001827)	C7orf25 (ENSTGUG00000001831)
Common canary	MODERN SPECIES	24	TPPP (ENSSCAG00000015680)	SLC9A3 (ENSSCAG00000015674)	LRRC14B (ENSSCAG00000015670)	RAMP3 (ENSSCAG00000015668)	ADCY1 (ENSSCAG00000015661)	IGFBP1 (ENSSCAG00000015655)	IGFBP3 (ENSSCAG00000015653)	TNS3 (ENSSCAG00000015645)	HUS1 (ENSSCAG00000015637)	CLASP2 (ENSSCAG00000015626)	UBP1 (ENSSCAG00000015619)	FBXL2 (ENSSCAG00000015614)	SUSD5 (ENSSCAG00000015611)	CRTAP (ENSSCAG00000015609)	PDIA4 (ENSSCAG00000015603) #21	EZH2 (ENSSCAG00000015590) #22	CUL1 (ENSSCAG00000015578) #23	CNTNAP2 (ENSSCAG00000015566) #24	TPK1 (ENSSCAG00000015559) #25	SEC61G (ENSSCAG00000015554)	EGFR (ENSSCAG00000015542)	LANCL2 (ENSSCAG00000015537)	VOPP1 (ENSSCAG00000015531)	BLVRA (ENSSCAG00000015527)	ENSSCAG00000015524	COA1 (ENSSCAG00000015519)	STK17A (ENSSCAG00000015513)	HECW1 (ENSSCAG00000015506)	MRPL32 (ENSSCAG00000015505)	PSMA2 (ENSSCAG00000015502)	C7orf25 (ENSSCAG00000015500)
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005013435	TGFBR1 (ENSCPRG00005013433)	ENSCPRG00005013429	SLC9A3 (ENSCPRG00005013422)	CEP72 (ENSCPRG00005013408)	TPPP (ENSCPRG00005013403)	SLC12A7 (ENSCPRG00005012667)	NFX1 (ENSCPRG00005012491)	ENSCPRG00005012478	TNS3 (ENSCPRG00005012409)	IGFBP3 (ENSCPRG00005012380)	IGFBP1 (ENSCPRG00005012333)	ADCY1 (ENSCPRG00005012310)	RAMP3 (ENSCPRG00005012244)	PDIA4 (ENSCPRG00005012218) #21	EZH2 (ENSCPRG00005012115) #22	CUL1 (ENSCPRG00005012085) #23	CNTNAP2 (ENSCPRG00005012040) #24	TPK1 (ENSCPRG00005011870) #25	SEC61G (ENSCPRG00005011725)	ENSCPRG00005011724	EGFR (ENSCPRG00005011649)	LANCL2 (ENSCPRG00005011572)	VOPP1 (ENSCPRG00005011565)	BLVRA (ENSCPRG00005011518)	COA1 (ENSCPRG00005011516)	STK17A (ENSCPRG00005011469)	HECW1 (ENSCPRG00005011450)	ENSCPRG00005011388	MRPL32 (ENSCPRG00005011386)	C7orf25 (ENSCPRG00005011382)
Australian saltwater crocodile	MODERN SPECIES	31	ENSCPRG00005008739	ENSCPRG00005008730	ENSCPRG00005008724	ENSCPRG00005008713	ENSCPRG00005008700	ENSCPRG00005008687	ENSCPRG00005008682	ENSCPRG00005008629	ENSCPRG00005008618	ENSCPRG00005008617	ENSCPRG00005008600	ENSCPRG00005008586	ENSCPRG00005008583	ENSCPRG00005008572	ENSCPRG00005008566	ENSCPRG00005008563 #22	ENSCPRG00005008550	ENSCPRG00005008528	ENSCPRG00005008516	ENSCPRG00005008461	ENSCPRG00005008429	ENSCPRG00005008422	ENSCPRG00005008415	ENSCPRG00005008408	ENSCPRG00005008403	ENSCPRG00005008394	ENSCPRG00005008359	ENSCPRG00005008346	SKIC8 (ENSCPRG00005008329)	ENSCPRG00005008314	ENSCPRG00005008310
Anura	ANCESTRAL SPECIES	71								ENSGT00390000015114	ENSGT00390000009719	ENSGT00390000010209	ENSGT00950000183186.B.b	ENSGT00950000183130.C	ENSGT00940000155721	ENSGT01050000244939.b	ENSGT00390000012690	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00940000154136	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00390000011072	ENSGT00440000033985	ENSGT00940000154014.a	ENSGT00940000158294	ENSGT00390000014996	ENSGT00550000074870	ENSGT00390000014722
Frog	MODERN SPECIES	6	cck (ENSXETG00000048244)	ENSXETG00000049263	eif1b (ENSXETG00000000359)	prlh (ENSXETG00000044496)	ENSXETG00000044094	myrip (ENSXETG00000014398)	ENSXETG00000044431	ENSXETG00000014406	lars2 (ENSXETG00000014411)	tmem158 (ENSXETG00000049066)	cdcp1 (ENSXETG00000020140)	clec3b (ENSXETG00000044950)	exosc7 (ENSXETG00000020144)	ENSXETG00000046231	zdhhc3 (ENSXETG00000020145)	ezh2 (ENSXETG00000020146) #22	cul1 (ENSXETG00000020148) #23	cntnap2 (ENSXETG00000033580) #24	ENSXETG00000046503	tpk1 (ENSXETG00000015845) #25	ENSXETG00000045637	sec61g (ENSXETG00000015843)	egfr (ENSXETG00000015826)	lancl2 (ENSXETG00000015818)	vopp1 (ENSXETG00000027607)	blvra (ENSXETG00000015816)	coa1 (ENSXETG00000015814)	stk17a (ENSXETG00000015813)	ENSXETG00000042080	hecw1 (ENSXETG00000015806)	mrpl32 (ENSXETG00000001852)
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000023358	ENSLLEG00000023379	ENSLLEG00000023433	KIF15 (ENSLLEG00000023549)	LARS2 (ENSLLEG00000025399)	ENSLLEG00000025796	ENSLLEG00000025848	ENSLLEG00000005668	TMEM158 (ENSLLEG00000005681)	CDCP1 (ENSLLEG00000005710)	CLEC3B (ENSLLEG00000005760)	EXOSC7 (ENSLLEG00000005782)	ZDHHC3 (ENSLLEG00000005919)	TGM4 (ENSLLEG00000006027)	TMEM42 (ENSLLEG00000006205)	EZH2 (ENSLLEG00000006316) #22	CUL1 (ENSLLEG00000006682) #23	ENSLLEG00000007018	ENSLLEG00000007057	CNTNAP2 (ENSLLEG00000007090) #24	ENSLLEG00000007295	ENSLLEG00000007317	TPK1 (ENSLLEG00000007352) #25	ENSLLEG00000007452	ENSLLEG00000007473	ENSLLEG00000007482	ENSLLEG00000007503	ENSLLEG00000007588	EGFR (ENSLLEG00000007612)	LANCL2 (ENSLLEG00000007740)	ENSLLEG00000007927
Coelacanth	MODERN SPECIES	1247																EZH2 (ENSLACG00000009785) #22	CUL1 (ENSLACG00000003136) #23
Actinopterygii	ANCESTRAL SPECIES	430															ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00940000154516.a.b ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000166120
Reedfish	MODERN SPECIES	296															ENSECRG00000017152	ezh2 (ENSECRG00000017185) #22
Neopterygii	ANCESTRAL SPECIES	106								ENSGT00390000017728	ENSGT01030000234613.a.a	ENSGT00940000154486.a.b	ENSGT00940000157664	ENSGT00940000161026	ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00940000154516.a.b ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000164667.b	ENSGT00390000004385	ENSGT00390000017600	ENSGT01030000234518.E.d	ENSGT00940000158224	ENSGT00940000159542	ENSGT01030000235025	ENSGT00390000001846	ENSGT00940000159419	ENSGT00940000154952.a.b
Spotted gar	MODERN SPECIES	675	EEF1E1 (ENSLOCG00000013217)	bloc1s5 (ENSLOCG00000013223)	txndc5 (ENSLOCG00000013233)	bmp6 (ENSLOCG00000013238)	zgc:101569 (ENSLOCG00000013243)	pdcd6 (ENSLOCG00000013249)	pigm (ENSLOCG00000013256)	exoc3 (ENSLOCG00000013261)	ahrrb (ENSLOCG00000013271)	ANKS6 (ENSLOCG00000013281)	mcm6l (ENSLOCG00000013289)	RAMP3 (ENSLOCG00000013297)	zgc:162895 (ENSLOCG00000013303)	ENSLOCG00000013313	pdia4 (ENSLOCG00000013319) #21	ezh2 (ENSLOCG00000013329) #22	cul1b (ENSLOCG00000013339) #23	CNTNAP2 (ENSLOCG00000013353) #24	tpk1 (ENSLOCG00000013400) #25	sec61g (ENSLOCG00000013405)	si:dkey-94e7.2 (ENSLOCG00000013408)	relch (ENSLOCG00000013429)	pign (ENSLOCG00000013442)	ENSLOCG00000018166	hnf4g (ENSLOCG00000013459)	ZFHX4 (ENSLOCG00000013472)	pex2 (ENSLOCG00000013475)	ENSLOCG00000013478	ENSLOCG00000013486	PKIA (ENSLOCG00000013487)	zc2hc1a (ENSLOCG00000013490)
Osteoglossocephalai	ANCESTRAL SPECIES	40													ENSGT00390000000706	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.b #24	ENSGT00940000154516.a.b ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000164667.b	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000017600	ENSGT01030000234518.E.d	ENSGT00940000158224	ENSGT00940000159542	ENSGT01030000235025	ENSGT00390000001846
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	284	ENSGT00390000018540.e	ENSGT00940000156394	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000158294.g.a	ENSGT00940000160556.g	ENSGT01090000260052.b.b.b	ENSGT00940000153769.B	ENSGT00520000055637.B.s.a	ENSGT00940000154835.C.cb	ENSGT01030000234613.a.a.l	ENSGT00940000154486.a.b.a.b	ENSGT00940000157664	ENSGT00940000161026.c	ENSGT00940000155013.w #22	ENSGT00940000154774.a.a #23	ENSGT00940000154516.b #24
Asian bonytongue	MODERN SPECIES	24	ENSSFOG00015010296	stk17a (ENSSFOG00015010305)	HECW1 (ENSSFOG00015010350)	vstm2a (ENSSFOG00015010396)	ENSSFOG00015010437	ENSSFOG00015010498	ENSSFOG00015010513	ENSSFOG00015010533	ENSSFOG00015010557	serpinb1l4 (ENSSFOG00015010603)	EXOC3 (ENSSFOG00015010620)	ENSSFOG00015010661	ANKS6 (ENSSFOG00015033002)	ENSSFOG00015026601	ENSSFOG00015032360	ezh2 (ENSSFOG00015010991) #22	CUL1 (ENSSFOG00015011089) #23	CNTNAP2 (ENSSFOG00015011161) #24	sec61g (ENSSFOG00015011263)	si:dkey-94e7.2 (ENSSFOG00015011320)	ENSSFOG00015011330	ENSSFOG00015026857	relch (ENSSFOG00015011367)	pign (ENSSFOG00015011456)	ENSSFOG00015032846	ZFHX4 (ENSSFOG00015011589)	pex2 (ENSSFOG00015031072)	ENSSFOG00015011644	ENSSFOG00015011738	zc2hc1a (ENSSFOG00015011761)	ENSSFOG00015011835
P. kingsleyae	MODERN SPECIES	283						ENSPKIG00000001773	ENSPKIG00000001729	ENSPKIG00000001677	SERPINB8 (ENSPKIG00000001654)	ENSPKIG00000001578	ENSPKIG00000001431	EXOC3 (ENSPKIG00000001357)	AHRR (ENSPKIG00000001317)	ANKS6 (ENSPKIG00000001258)	RAMP3 (ENSPKIG00000001210)	ezh2 (ENSPKIG00000001147) #22	CUL1 (ENSPKIG00000001060) #23	CNTNAP2 (ENSPKIG00000000995) #24
Osteoglossiformes	ANCESTRAL SPECIES	486													ENSGT00940000161026.d	ENSGT00390000000706	ENSGT00940000157738 #21	ENSGT00940000155013.x #22	ENSGT00940000154774.b #23	ENSGT00940000154516.a.a ##24
P. kingsleyae	MODERN SPECIES	463						ccr12a (ENSPKIG00000001931)	si:ch211-106n13.3 (ENSPKIG00000001895)	ENSPKIG00000001849	pigm (ENSPKIG00000001831)	exoc3 (ENSPKIG00000001792)	ahrrb (ENSPKIG00000001752)	mcm6l (ENSPKIG00000001695)	RAMP3 (ENSPKIG00000001674)	zgc:162895 (ENSPKIG00000001641)	pdia4 (ENSPKIG00000001611) #21	ezh2 (ENSPKIG00000001533) #22	CUL1 (ENSPKIG00000001473) #23	CNTNAP2 (ENSPKIG00000001434) ##24
Asian bonytongue	MODERN SPECIES	7						ENSSFOG00015026367	ENSSFOG00015028322	SNAI2 (ENSSFOG00015018025)	SNTG1 (ENSSFOG00015018129)	pigm (ENSSFOG00015018263)	exoc3 (ENSSFOG00015018281)	mcm6l (ENSSFOG00015018384)	RAMP3 (ENSSFOG00015018419)	zgc:162895 (ENSSFOG00015018432)	pdia4 (ENSSFOG00015018458) #21	ezh2 (ENSSFOG00015018492) #22	CUL1 (ENSSFOG00015018579) #23	ENSSFOG00015029728	CNTNAP2 (ENSSFOG00015018636) ##24	tpk1 (ENSSFOG00015018681) #25	ENSSFOG00015018734	ENSSFOG00015018775	ENSSFOG00015027677	ENSSFOG00015018804	relch (ENSSFOG00015018836)	ENSSFOG00015018991	ENSSFOG00015024884	hnf4g (ENSSFOG00015018998)	ENSSFOG00015031715	ZFHX4 (ENSSFOG00015005272)	PKIA (ENSSFOG00015031041)
Clupeocephala	ANCESTRAL SPECIES	34														ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.a.a ##24	ENSGT00940000164262	ENSGT00940000154516.a.b ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000164667.b.b	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000017600	ENSGT01030000234518.E.d	ENSGT00940000158224	ENSGT00940000159542	ENSGT01030000235025
Otomorpha	ANCESTRAL SPECIES	111	ENSGT00940000159116	ENSGT00550000074801	ENSGT00940000164731.l	ENSGT01050000244868	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476	ENSGT00940000156508.j	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00900000141099	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.a.b ##24	ENSGT00390000016016.A #25	ENSGT00940000164667.b.a.a	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000017600	ENSGT00940000175299	ENSGT00940000158224	ENSGT00940000159542	ENSGT01030000235025	ENSGT00390000001846	ENSGT00670000099350
Clupeiformes	ANCESTRAL SPECIES	47	ENSGT00940000159116	ENSGT00550000074801	ENSGT00940000164731.l	ENSGT01050000244868.e	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476	ENSGT00940000156508.j	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00900000141099	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.a.b ##24	ENSGT00390000016016.A #25	ENSGT00390000001319.f	ENSGT00940000164667.b.a.a	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000017600	ENSGT01030000234518.E.d	ENSGT00940000158224	ENSGT00940000159542	ENSGT01030000235025	ENSGT00390000001846	ENSGT00670000099350
Denticle herring	MODERN SPECIES	11	eif2s3 (ENSDCDG00000035700)	ENSDCDG00000035711	ptgdsb.1 (ENSDCDG00000035718)	c8g (ENSDCDG00000035723)	msrb2 (ENSDCDG00000035726)	ARMC3 (ENSDCDG00000035730)	pip4k2aa (ENSDCDG00000035733)	ENSDCDG00000035741	ENSDCDG00000035742	MLLT10 (ENSDCDG00000035748)	commd3 (ENSDCDG00000035751)	BMI1 (ENSDCDG00000035753)	spag6 (ENSDCDG00000035754)	ENSDCDG00000035756	pdia4 (ENSDCDG00000035760) #21	ezh2 (ENSDCDG00000035776) #22	cul1b (ENSDCDG00000035781) #23	CNTNAP2 (ENSDCDG00000035784) ##24	tpk1 (ENSDCDG00000035799) #25	sec61g (ENSDCDG00000035801)	ENSDCDG00000035802	ENSDCDG00000035803	relch (ENSDCDG00000035819)	pign (ENSDCDG00000035830)	GPR141 (ENSDCDG00000035832)	hnf4g (ENSDCDG00000035834)	ZFHX4 (ENSDCDG00000035840)	ENSDCDG00000035843	pex2 (ENSDCDG00000035844)	ENSDCDG00000013838	ENSDCDG00000013844
Atlantic herring	MODERN SPECIES	8	ENSCHAG00000009422	eif2s3 (ENSCHAG00000009455)	ENSCHAG00000009504	ptgdsb.1 (ENSCHAG00000009525)	c8g (ENSCHAG00000009531)	msrb2 (ENSCHAG00000009546)	ARMC3 (ENSCHAG00000009565)	pip4k2aa (ENSCHAG00000010261)	SKIDA1 (ENSCHAG00000011083)	ENSCHAG00000011110	commd3 (ENSCHAG00000011417)	bmi1a (ENSCHAG00000011440)	spag6 (ENSCHAG00000011481)	ENSCHAG00000011587	pdia4 (ENSCHAG00000011683) #21	ezh2 (ENSCHAG00000011817) #22	CUL1 (ENSCHAG00000012352) #23	CNTNAP2 (ENSCHAG00000012690) ##24	tpk1 (ENSCHAG00000017569) #25	sec61g (ENSCHAG00000017583)	zgc:112332 (ENSCHAG00000017598)	ENSCHAG00000017621	ENSCHAG00000017866	ENSCHAG00000018091	relch (ENSCHAG00000018267)	pign (ENSCHAG00000022031)	GPR141 (ENSCHAG00000022490)	GPR141 (ENSCHAG00000022496)	stk17a (ENSCHAG00000022503)	HECW1 (ENSCHAG00000022552)	vstm2a (ENSCHAG00000023248)
Otophysi	ANCESTRAL SPECIES	42	ENSGT00940000159116	ENSGT00550000074801	ENSGT00940000164731.l	ENSGT01050000244868	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476	ENSGT00940000156508.j	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00900000141099	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.a.b.l ##24	ENSGT00390000016016.A #25	ENSGT00390000004385	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a
Characiphysae	ANCESTRAL SPECIES	17	ENSGT00390000000183	ENSGT00940000159116	ENSGT00550000074801	ENSGT00940000164731.l	ENSGT01050000244868	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476	ENSGT00940000156508.j	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000164667.b.a.a	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.q	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a
Channel catfish	MODERN SPECIES	15	cct5 (ENSIPUG00000007193)	cmbl (ENSIPUG00000007131)	klhl15 (ENSIPUG00000007100)	eif2s3 (ENSIPUG00000007056)	Zfx (ENSIPUG00000007038)	c8g (ENSIPUG00000006998)	msrb2 (ENSIPUG00000006982)	armc3 (ENSIPUG00000006953)	PIP4K2A (ENSIPUG00000006851)	ENSIPUG00000006832	ENSIPUG00000006805	mllt10 (ENSIPUG00000006724)	commd3 (ENSIPUG00000006664)	bmi1 (ENSIPUG00000006628)	pdia4 (ENSIPUG00000006586) #21	ezh2 (ENSIPUG00000006483) #22	cul1 (ENSIPUG00000005099) #23	ENSIPUG00000005075	CNTNAP2 (ENSIPUG00000004936) ##24	ccl34b.4 (ENSIPUG00000004900)	ccl34b.1 (ENSIPUG00000004880)	ek1 (ENSIPUG00000004842)	hs6st1b (ENSIPUG00000004826)	bcl2 (ENSIPUG00000004823)	cox4i1l (ENSIPUG00000004802)	prkag2a (ENSIPUG00000004673)	topbp1 (ENSIPUG00000004602)	tmem108 (ENSIPUG00000004577)	cdv3 (ENSIPUG00000004558)	vps41 (ENSIPUG00000004370)	pou6f2 (ENSIPUG00000004301)
Characiphysae_b	ANCESTRAL SPECIES	52	ENSGT00390000000183	ENSGT00940000159116	ENSGT00550000074801	ENSGT00940000164731.l	ENSGT01050000244868	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476	ENSGT00940000156508.j	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154516.a.b.l ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000164667.b.a.a	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.q	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a
Electric eel	MODERN SPECIES	696					ptgdsb.1 (ENSEEEG00000016728)	c8g (ENSEEEG00000016731)	msrb2 (ENSEEEG00000016732)	pip4k2aa (ENSEEEG00000016735)	SKIDA1 (ENSEEEG00000016737)	ENSEEEG00000016738	ENSEEEG00000016739	commd3 (ENSEEEG00000016740)	bmi1a (ENSEEEG00000016741)	ENSEEEG00000016743	pdia4 (ENSEEEG00000016745) #21	ezh2 (ENSEEEG00000016763) #22
Characoidei	ANCESTRAL SPECIES	14	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000159116	ENSGT00550000074801	ENSGT00940000164731.l	ENSGT01050000244868	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476	ENSGT00940000156508.j	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.a.b.l ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000164667.b.a.a	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.q	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b
Red-bellied piranha	MODERN SPECIES	8		MTRR (ENSPNAG00000017312)	cct5 (ENSPNAG00000017351)	cmbl (ENSPNAG00000017376)	klhl15 (ENSPNAG00000017414)	eif2s3 (ENSPNAG00000017458)	ENSPNAG00000017478	ptgdsb.1 (ENSPNAG00000017589)	c8g (ENSPNAG00000017610)	msrb2 (ENSPNAG00000017615)	ARMC3 (ENSPNAG00000017700)	pip4k2aa (ENSPNAG00000017738)	SKIDA1 (ENSPNAG00000017751)	MLLT10 (ENSPNAG00000017776)	pdia4 (ENSPNAG00000017785) #21	ezh2 (ENSPNAG00000017892) #22	cul1b (ENSPNAG00000018024) #23	CNTNAP2 (ENSPNAG00000018046) ##24	tpk1 (ENSPNAG00000018079) #25	sec61g (ENSPNAG00000018100)	zgc:112332 (ENSPNAG00000018119)	ENSPNAG00000018146	ENSPNAG00000018194	relch (ENSPNAG00000018652)	CSPP1 (ENSPNAG00000018733)	ARFGEF1 (ENSPNAG00000019034)	CPA6 (ENSPNAG00000019071)	PREX2 (ENSPNAG00000019161)	zgc:162928 (ENSPNAG00000019179)	sulf1 (ENSPNAG00000019431)	SLCO5A1 (ENSPNAG00000019460)
Mexicana tetra	MODERN SPECIES	18	cct5 (ENSAMXG00000020625)	cmbl (ENSAMXG00000020632)	klhl15 (ENSAMXG00000043398)	eif2s3 (ENSAMXG00000020662)	ENSAMXG00000043946	ptgdsb.1 (ENSAMXG00000038500)	c8g (ENSAMXG00000020744)	msrb2 (ENSAMXG00000020803)	ARMC3 (ENSAMXG00000020820)	pip4k2aa (ENSAMXG00000020931)	SKIDA1 (ENSAMXG00000024968)	MLLT10 (ENSAMXG00000021190)	commd3 (ENSAMXG00000043451)	bmi1a (ENSAMXG00000034022)	pdia4 (ENSAMXG00000021465) #21	ezh2 (ENSAMXG00000021485) #22	cul1b (ENSAMXG00000021535) #23	CNTNAP2 (ENSAMXG00000021544) ##24	ENSAMXG00000032925	sec61g (ENSAMXG00000040156)	tpk1 (ENSAMXG00000042237) #25	zgc:112332 (ENSAMXG00000001048)	ENSAMXG00000001051	ENSAMXG00000001061	ENSAMXG00000012231	rps6kc1 (ENSAMXG00000012243)	si:ch73-111k22.2 (ENSAMXG00000035007)	ENSAMXG00000032481	ENSAMXG00000033111	ttc13 (ENSAMXG00000012290)	arv1 (ENSAMXG00000038378)
Cyprinoidei	ANCESTRAL SPECIES	20	ENSGT00940000159116	ENSGT00550000074801	ENSGT00940000164731.l	ENSGT01050000244868	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476	ENSGT00940000156508.j	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00900000141099	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000164262	ENSGT00940000154516.a.b.l ##24	ENSGT00390000016016.A #25	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.o	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	98	ENSGT00390000000183	ENSGT00940000159116.b	ENSGT00550000074801.a	ENSGT00940000164731.l.b	ENSGT00440000034309	ENSGT00940000155240.B	ENSGT00940000157476.d	ENSGT00940000156508.j.b	ENSGT00940000153451.a.b.e	ENSGT00940000157711.d	ENSGT00390000015971	ENSGT00940000156042.z.b	ENSGT00900000141099.i	ENSGT00940000162104	ENSGT00940000157738.h #21	ENSGT00940000155013.y #22	ENSGT00940000154774.z.a #23	ENSGT00940000154516.a.b.k.a ##24	ENSGT00390000016016.A.t #25	ENSGT00390000001319.h	ENSGT00940000164667.b.a.a.b	ENSGT00940000164667.b.a.a.a.a	ENSGT00940000164667.a	ENSGT00940000168990.b	ENSGT00390000004385.m	ENSGT00390000015084.c.a.f	ENSGT00940000157108.w	ENSGT00940000159307.b	ENSGT00940000155894.o.a	ENSGT00390000005870.e	ENSGT00940000157544.f
Goldfish	MODERN SPECIES	16	cmbl (ENSCARG00000055754)	klhl15 (ENSCARG00000055738)	eif2s3 (ENSCARG00000055500)	ENSCARG00000055460	ENSCARG00000055415	msrb2 (ENSCARG00000055356)	ARMC3 (ENSCARG00000054805)	pip4k2aa (ENSCARG00000054505)	SKIDA1 (ENSCARG00000054476)	MLLT10 (ENSCARG00000053500)	commd3 (ENSCARG00000053396)	bmi1a (ENSCARG00000053367)	spag6 (ENSCARG00000053356)	ENSCARG00000053256	pdia4 (ENSCARG00000053155) #21	ezh2 (ENSCARG00000053020) #22	cul1b (ENSCARG00000052764) #23	ENSCARG00000052721	CNTNAP2 (ENSCARG00000051289) ##24	tpk1 (ENSCARG00000051082) #25	sec61g (ENSCARG00000051056)	ENSCARG00000051038	zgc:112332 (ENSCARG00000050970)	ENSCARG00000050954	ENSCARG00000050948	ENSCARG00000050935	relch (ENSCARG00000048440)	CSPP1 (ENSCARG00000048011)	ARFGEF1 (ENSCARG00000047488)	CPA6 (ENSCARG00000047273)	PREX2 (ENSCARG00000043714)
Cyprininae_a	ANCESTRAL SPECIES	19	ENSGT00550000074988.c	ENSGT00390000000183	ENSGT00940000159116.b	ENSGT00550000074801.a	ENSGT00940000164731.l.b	ENSGT00440000034309	ENSGT00940000157476.d	ENSGT00940000156508.j.b	ENSGT00940000153451.a.b.e	ENSGT00940000157711.d	ENSGT00390000015971	ENSGT00940000156042.z.b	ENSGT00900000141099.i	ENSGT00940000162104	ENSGT00940000157738.h #21	ENSGT00940000155013.y #22	ENSGT00940000154774.z.a #23	ENSGT01100000263576.a.a.b.a	ENSGT00940000154516.a.b.k.a ##24	ENSGT00390000016016.A.t #25	ENSGT00390000001319.h	ENSGT00940000164667.b.a.a.b	ENSGT00940000164667.b.a.a.a.a	ENSGT00940000164667.a	ENSGT00940000168990.b	ENSGT00390000004385.m	ENSGT00390000015084.c.a.f	ENSGT00940000157108.w	ENSGT00940000159307.b	ENSGT00940000155894.o.a	ENSGT00390000005870.e
Golden-line barbel	MODERN SPECIES	196	cct5 (ENSSGRG00000028243)	cmbl (ENSSGRG00000028248)	klhl15 (ENSSGRG00000028249)	eif2s3 (ENSSGRG00000028250)	ENSSGRG00000028266	c8g (ENSSGRG00000028269)	msrb2 (ENSSGRG00000028270)	ARMC3 (ENSSGRG00000028271)	pip4k2aa (ENSSGRG00000028272)	SKIDA1 (ENSSGRG00000028381)	MLLT10 (ENSSGRG00000028383)	commd3 (ENSSGRG00000028418)	bmi1a (ENSSGRG00000028419)	spag6 (ENSSGRG00000028466)	pdia4 (ENSSGRG00000028476) #21	ezh2 (ENSSGRG00000028501) #22	cul1b (ENSSGRG00000028535) #23	ENSSGRG00000028782	CNTNAP2 (ENSSGRG00000028785) ##24	tpk1 (ENSSGRG00000028793) #25	sec61g (ENSSGRG00000028794)	zgc:112332 (ENSSGRG00000028799)	ENSSGRG00000028803	ENSSGRG00000028804	relch (ENSSGRG00000028841)	ENSSGRG00000031242
Common carp reference	MODERN SPECIES	40	ENSCCRG00000059567	cct5 (ENSCCRG00000063788)	cmbl (ENSCCRG00000015597)	klhl15 (ENSCCRG00000053529)	eif2s3 (ENSCCRG00000080130)	ENSCCRG00000067740	c8g (ENSCCRG00000037594)	ENSCCRG00000037632	pip4k2aa (ENSCCRG00000059210)	ENSCCRG00000010078	commd3 (ENSCCRG00000055795)	bmi1a (ENSCCRG00000075259)	spag6 (ENSCCRG00000037971)	ENSCCRG00000081117	pdia4 (ENSCCRG00000079379) #21	ezh2 (ENSCCRG00000080855) #22	ENSCCRG00000063629	ENSCCRG00000062448	cul1b (ENSCCRG00000054420) #23	ENSCCRG00000072616	CNTNAP2 (ENSCCRG00000059402) ##24	ENSCCRG00000079463	tpk1 (ENSCCRG00000010913) #25	sec61g (ENSCCRG00000010917)	zgc:112332 (ENSCCRG00000064508)	ENSCCRG00000062509	ENSCCRG00000017299	relch (ENSCCRG00000015824)	CSPP1 (ENSCCRG00000041624)	ARFGEF1 (ENSCCRG00000076582)	CPA6 (ENSCCRG00000021626)
Cyprininae	ANCESTRAL SPECIES	379	ENSGT00650000094897.d	ENSGT00940000158036.f	ENSGT00940000155822.c	ENSGT00550000074988.d	ENSGT00940000159116.a	ENSGT00550000074801.b	ENSGT00940000164731.l.a	ENSGT01050000244868.j.a	ENSGT00940000157476.c	ENSGT00940000156508.j.a	ENSGT00940000153451.a.b.f	ENSGT00940000157711.c	ENSGT00940000156042.z.a	ENSGT00900000141099.j	ENSGT00940000157738.g #21	ENSGT00940000155013.z #22	ENSGT00940000154774.z.b #23	ENSGT00940000164262	ENSGT00940000154516.a.b.l.b ##24	ENSGT00390000016016.A.s #25	ENSGT00390000001319.g	ENSGT00940000164667.b.a.a.a.b	ENSGT00940000168990.a	ENSGT00390000004385.n	ENSGT00390000015084.c.a.e	ENSGT00940000157108.x	ENSGT00940000159307.a	ENSGT00940000155894.o.b
Cyprininae_a	ANCESTRAL SPECIES	57	ENSGT00940000158036.f	ENSGT00940000155822.c	ENSGT00550000074988.d	ENSGT00940000159116.a	ENSGT00550000074801.b	ENSGT00940000164731.l.a	ENSGT01050000244868.j.a	ENSGT00940000155240.B	ENSGT00940000157476.c	ENSGT00940000156508.j.a	ENSGT00940000153451.a.b.f	ENSGT00940000157711.c	ENSGT00940000156042.z.a	ENSGT00900000141099.j	ENSGT00940000157738.g #21	ENSGT00940000155013.z #22	ENSGT00940000154774.z.b #23	ENSGT00940000164262	ENSGT00940000154516.a.b.l.b ##24	ENSGT00390000016016.A.s #25	ENSGT00390000001319.g	ENSGT00940000164667.b.a.a.a.b	ENSGT00940000168990.a	ENSGT00390000004385.n	ENSGT00390000015084.c.a.e	ENSGT00940000157108.x	ENSGT00940000159307.a	ENSGT00940000155894.o.b	ENSGT00390000005870.f	ENSGT00940000157544.e	ENSGT01080000257410.B.a.b.b.b.b
Common carp reference	MODERN SPECIES	14	sema5a (ENSCCRG00000047299)	ENSCCRG00000044880	cct5 (ENSCCRG00000044889)	klhl15 (ENSCCRG00000065950)	eif2s3 (ENSCCRG00000068544)	ENSCCRG00000015605	ENSCCRG00000015608	msrb2 (ENSCCRG00000061394)	ENSCCRG00000065941	pip4k2aa (ENSCCRG00000077706)	ENSCCRG00000070883	ENSCCRG00000054546	bmi1a (ENSCCRG00000052926)	spag6 (ENSCCRG00000064505)	pdia4 (ENSCCRG00000037968) #21	ezh2 (ENSCCRG00000037596) #22	cul1b (ENSCCRG00000060191) #23	ENSCCRG00000073468	ENSCCRG00000063934	CNTNAP2 (ENSCCRG00000073197) ##24	sec61g (ENSCCRG00000036353)	tpk1 (ENSCCRG00000036366) #25	zgc:112332 (ENSCCRG00000036051)	ENSCCRG00000036003	relch (ENSCCRG00000017320)	CSPP1 (ENSCCRG00000066335)	ARFGEF1 (ENSCCRG00000067213)	CPA6 (ENSCCRG00000036274)	PREX2 (ENSCCRG00000080090)	zgc:162928 (ENSCCRG00000036292)	sulf1 (ENSCCRG00000036324)
Golden-line barbel	MODERN SPECIES	364	sema5a (ENSSGRG00000034420)	MTRR (ENSSGRG00000034636)	cct5 (ENSSGRG00000034668)	klhl15 (ENSSGRG00000035196)	eif2s3 (ENSSGRG00000035202)	ENSSGRG00000035313	ENSSGRG00000035317	msrb2 (ENSSGRG00000035318)	ENSSGRG00000035319	pip4k2aa (ENSSGRG00000035337)	SKIDA1 (ENSSGRG00000035547)	ENSSGRG00000035549	commd3 (ENSSGRG00000035655)	bmi1a (ENSSGRG00000035657)	pdia4 (ENSSGRG00000035662) #21	ezh2 (ENSSGRG00000035691) #22	cul1b (ENSSGRG00000036471) #23	cntnap2a (ENSSGRG00000037598)
Goldfish	MODERN SPECIES	43	ENSCARG00000068268	sema5a (ENSCARG00000068304)	MTRR (ENSCARG00000068485)	cct5 (ENSCARG00000068753)	klhl15 (ENSCARG00000068758)	eif2s3 (ENSCARG00000068784)	ENSCARG00000068880	ENSCARG00000068889	pip4k2aa (ENSCARG00000068904)	SKIDA1 (ENSCARG00000068962)	ENSCARG00000068979	ENSCARG00000069092	bmi1a (ENSCARG00000069102)	spag6 (ENSCARG00000069120)	pdia4 (ENSCARG00000069134) #21	ezh2 (ENSCARG00000069163) #22	cul1b (ENSCARG00000069205) #23	CNTNAP2 (ENSCARG00000069395) ##24	tpk1 (ENSCARG00000069712) #25	sec61g (ENSCARG00000069727)	zgc:112332 (ENSCARG00000069732)	ENSCARG00000069744	relch (ENSCARG00000069781)	CSPP1 (ENSCARG00000069942)	ARFGEF1 (ENSCARG00000069998)	CPA6 (ENSCARG00000070106)	PREX2 (ENSCARG00000070132)	otulina (ENSCARG00000070164)	ENSCARG00000070163	ankha (ENSCARG00000070167)	myca (ENSCARG00000070169)
Zebrafish	MODERN SPECIES	16	cmbl (ENSDARG00000073786)	klhl15 (ENSDARG00000001930)	eif2s3 (ENSDARG00000008292)	ENSDARG00000074453	ptgdsb.2 (ENSDARG00000071626)	ptgdsb.1 (ENSDARG00000027088)	c8g (ENSDARG00000032098)	msrb2 (ENSDARG00000018459)	ARMC3 (ENSDARG00000074708)	pip4k2aa (ENSDARG00000003776)	ENSDARG00000045401	commd3 (ENSDARG00000045402)	bmi1a (ENSDARG00000006010)	spag6 (ENSDARG00000020158)	pdia4 (ENSDARG00000018491) #21	ezh2 (ENSDARG00000010571) #22	cul1b (ENSDARG00000007691) #23	cntnap2a (ENSDARG00000058969)	tpk1 (ENSDARG00000038040) #25	sec61g (ENSDARG00000018637)	zgc:112332 (ENSDARG00000058966)	si:dkey-73n8.3 (ENSDARG00000089205)	ENSDARG00000087804	relch (ENSDARG00000101443)	CSPP1 (ENSDARG00000100236)	ARFGEF1 (ENSDARG00000063474)	CPA6 (ENSDARG00000012013)	PREX2 (ENSDARG00000071692)	C24H8orf34 (ENSDARG00000095034)	sulf1 (ENSDARG00000038428)	SLCO5A1 (ENSDARG00000071685)
Euteleosteomorpha	ANCESTRAL SPECIES	147														ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.a.a ##24	ENSGT00940000164262	ENSGT00940000154516.a.b ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000164667.b.b	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000017600	ENSGT01030000234518.E.d	ENSGT00940000158224	ENSGT00390000001846	ENSGT00940000159542
Protacanthopterygii	ANCESTRAL SPECIES	70	ENSGT00890000139496.b	ENSGT00940000162952.d.b.a	ENSGT00940000177048	ENSGT01050000244868.d	ENSGT00440000034309	ENSGT00940000155240.B.d	ENSGT00940000157476	ENSGT00940000156508	ENSGT00940000153451.a.b	ENSGT00940000157711	ENSGT00390000015971	ENSGT00940000156042	ENSGT00900000141099	ENSGT00940000162104	ENSGT00940000157738 #21	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154516.a.a ##24	ENSGT00940000164262	ENSGT00940000154516.a.b.a ##24	ENSGT00390000016016.A #25	ENSGT00390000001319	ENSGT00940000164667.b.b	ENSGT00940000164667.a	ENSGT00940000168990	ENSGT00390000004385	ENSGT00390000017600	ENSGT01030000234518.E.d	ENSGT00940000158224	ENSGT00390000001846	ENSGT00940000159542
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	157	ENSGT00950000183196.B.e.e.b	ENSGT00940000163015	ENSGT00390000003738.b.d.a.c	ENSGT00940000154509.ad.b	ENSGT00890000139496.b	ENSGT00940000162952.d.b.a.b	ENSGT00440000034309	ENSGT00940000155240.B.d.a	ENSGT00940000156508.g	ENSGT00940000157711.e.a	ENSGT00390000015971.g	ENSGT00940000156042.g.a	ENSGT00900000141099.k	ENSGT00940000162104	ENSGT00940000157738.j #21	ENSGT00940000155013.`b #22	ENSGT00940000154774.f #23	ENSGT00940000164262.e	ENSGT00940000154516.a.b.a.a ##24	ENSGT01040000240385.A.b.b.a.a.a.b.a.b
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00950000183196.B.e.e.b	ENSGT00390000003738.b.d.a.c.a	ENSGT00940000154509.ad.b	ENSGT00890000139496.b	ENSGT00940000162952.d.b.a.b	ENSGT00440000034309	ENSGT00940000155240.B.d.a	ENSGT00940000156508.g	ENSGT00940000153451.a.b.d	ENSGT00940000157711.e.a	ENSGT00390000015971.g	ENSGT00940000156042.g.a	ENSGT00900000141099.k	ENSGT00940000162104	ENSGT00940000157738.j #21	ENSGT00940000155013.`b #22	ENSGT00940000154774.f #23	ENSGT00940000164262.e	ENSGT00940000154516.a.b.a.a ##24	ENSGT01040000240385.A.b.b.a.a.a.b.a.b	ENSGT00390000016016.A.u #25	ENSGT00990000213379	ENSGT00940000164667.b.b	ENSGT00940000164667.a	ENSGT00940000168990.c	ENSGT00390000004385.t	ENSGT00390000017600	ENSGT01030000234518.E.d.f	ENSGT00940000158224.i	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.a.a.a	ENSGT00990000205760
Salmo	ANCESTRAL SPECIES	3	ENSGT00950000183196.B.e.e.b	ENSGT00390000003738.b.d.a.c.a	ENSGT00940000154509.ad.b	ENSGT00890000139496.b	ENSGT00940000162952.d.b.a.b	ENSGT00440000034309	ENSGT00940000155240.B.d.a	ENSGT00940000156508.g	ENSGT00940000153451.a.b.d	ENSGT00940000157711.e.a	ENSGT00390000015971.g	ENSGT00940000156042.g.a	ENSGT00900000141099.k	ENSGT00940000162104	ENSGT00940000157738.j #21	ENSGT00940000155013.`b #22	ENSGT00940000154774.f #23	ENSGT00940000154516.a.b.a.a ##24	ENSGT01040000240385.A.b.b.a.a.a.b.a.b	ENSGT00390000016016.A.u #25	ENSGT00990000213379	ENSGT00940000164667.b.b	ENSGT00940000168990.c	ENSGT00390000004385.t	ENSGT00390000017600	ENSGT01030000234518.E.d.f	ENSGT00940000158224.i	ENSGT00670000099350	ENSGT00390000001846	ENSGT00940000159542.c.a	ENSGT00940000163999.a.c.b.b
River trout	MODERN SPECIES	11	PLD1 (ENSSTUG00000028837)	TNIK (ENSSTUG00000034281)	ENSSTUG00000043419	rpl22l1 (ENSSTUG00000043450)	cldn11b (ENSSTUG00000043461)	ENSSTUG00000043504	c8g (ENSSTUG00000043571)	msrb2 (ENSSTUG00000043588)	pip4k2aa (ENSSTUG00000043628)	SKIDA1 (ENSSTUG00000044098)	ENSSTUG00000044104	ENSSTUG00000044126	spag6 (ENSSTUG00000044151)	ENSSTUG00000044212	pdia4 (ENSSTUG00000044285) #21	ezh2 (ENSSTUG00000044855) #22	CUL1 (ENSSTUG00000045019) #23	CNTNAP2 (ENSSTUG00000045187) ##24	ENSSTUG00000045418	tpk1 (ENSSTUG00000045445) #25	ENSSTUG00000045604	ENSSTUG00000045615	ENSSTUG00000045660	relch (ENSSTUG00000045716)	ENSSTUG00000046338	pign (ENSSTUG00000046377)	GPR141 (ENSSTUG00000046534)	hnf4g (ENSSTUG00000046542)	ENSSTUG00000046577	pex2 (ENSSTUG00000046578)	ZFHX4 (ENSSTUG00000046582)
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000070541	rpl22l1 (ENSSSAG00000085245)	ENSSSAG00000110125	ENSSSAG00000113721	ENSSSAG00000070555	c8g (ENSSSAG00000070566)	MSRB2 (ENSSSAG00000070582)	pip4k2aa (ENSSSAG00000070605)	SKIDA1 (ENSSSAG00000071533)	ENSSSAG00000071538	commd3 (ENSSSAG00000071562)	ENSSSAG00000071617	spag6 (ENSSSAG00000099051)	ENSSSAG00000071687	pdia4 (ENSSSAG00000071703) #21	ezh2 (ENSSSAG00000071778) #22	CUL1 (ENSSSAG00000090758) #23	CNTNAP2 (ENSSSAG00000072666) ##24	ENSSSAG00000109741	tpk1 (ENSSSAG00000077596) #25	ENSSSAG00000077587	ENSSSAG00000077576	tnfrsf11a (ENSSSAG00000077566)	relch (ENSSSAG00000075954)	PIGN (ENSSSAG00000073378)	ENSSSAG00000073249	ENSSSAG00000073165	ENSSSAG00000077634	pex2 (ENSSSAG00000089455)	ENSSSAG00000077600	tlr13 (ENSSSAG00000077966)
Oncorhynchus	ANCESTRAL SPECIES	28	ENSGT00940000154509.ad.b	ENSGT00890000139496.b	ENSGT00940000154964.z	ENSGT00940000162952.d.b.a.b	ENSGT01050000244868.d.c	ENSGT00440000034309	ENSGT00940000155240.B.d.a	ENSGT00940000156508.h.a.b.a.a	ENSGT00940000153451.a.b.d	ENSGT00940000157711.e.a	ENSGT00390000015971.g	ENSGT00940000156042.g.a	ENSGT00900000141099.k	ENSGT00940000162104	ENSGT00940000157738.j #21	ENSGT00940000155013.`b #22	ENSGT00940000154774.f #23	ENSGT00940000164262.e	ENSGT01040000240385.A.b.b.a.a.a.b.a.b	ENSGT00940000154516.a.b.a.a ##24	ENSGT00390000016016.A.u #25	ENSGT00990000213379	ENSGT00940000164667.b.b	ENSGT00940000164667.a	ENSGT00940000168990.c	ENSGT00390000004385.t	ENSGT00390000017600	ENSGT01030000234518.E.d.f	ENSGT00940000158224.i	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.a.a.a.a.a.a.a	ENSGT00990000205760
Oncorhynchus_a	ANCESTRAL SPECIES	23	ENSGT00940000155015.g.a	ENSGT00950000183196.B.e.e.b	ENSGT00940000163015	ENSGT00390000003738.b.d.a.c.a.a	ENSGT00940000154509.ad.b	ENSGT00890000139496.b	ENSGT00940000162952.d.b.a.b	ENSGT00440000034309	ENSGT01050000244868.d.c	ENSGT00940000156508.h.a.b.a.a	ENSGT00940000153451.a.b.d	ENSGT00940000157711.e.a	ENSGT00940000156042.g.a	ENSGT00900000141099.k	ENSGT00940000157738.j #21	ENSGT00940000155013.`b #22	ENSGT00940000154774.f #23	ENSGT00940000164262.e	ENSGT01040000240385.A.b.b.a.a.a.b.a.b	ENSGT00940000154516.a.b.a.a ##24	ENSGT00390000016016.A.u #25	ENSGT00990000213379	ENSGT00940000164667.b.b	ENSGT00940000164667.a	ENSGT00940000168990.c	ENSGT00390000004385.t	ENSGT00390000017600	ENSGT01030000234518.E.d.f	ENSGT00940000158224.i	ENSGT00390000001846	ENSGT00940000159542.c.a
Coho salmon	MODERN SPECIES	9	tnfsf10 (ENSOKIG00005050045)	nceh1b.1 (ENSOKIG00005050043)	ENSOKIG00005049489	ENSOKIG00005049272	cldn11b (ENSOKIG00005049265)	ENSOKIG00005049258	ENSOKIG00005049245	ENSOKIG00005049221	pip4k2aa (ENSOKIG00005048896)	SKIDA1 (ENSOKIG00005048809)	ENSOKIG00005048789	ENSOKIG00005048763	ENSOKIG00005048749	spag6 (ENSOKIG00005048697)	pdia4 (ENSOKIG00005048622) #21	ezh2 (ENSOKIG00005048485) #22	CUL1 (ENSOKIG00005048377) #23	ENSOKIG00005048360	CNTNAP2 (ENSOKIG00005047995) ##24	tpk1 (ENSOKIG00005047904) #25	ENSOKIG00005047890	ENSOKIG00005047882	ENSOKIG00005047876	ENSOKIG00005047861	relch (ENSOKIG00005045589)	pign (ENSOKIG00005045381)	GPR141 (ENSOKIG00005045356)	hnf4g (ENSOKIG00005045299)	ENSOKIG00005045279	ENSOKIG00005045205	pex2 (ENSOKIG00005045192)
Chinook salmon	MODERN SPECIES	7	msl2b (ENSOTSG00005038413)	NCEH1 (ENSOTSG00005038416)	ENSOTSG00005038435	ENSOTSG00005043256	ENSOTSG00005043620	rpl22l1 (ENSOTSG00005043622)	ENSOTSG00005043623	ENSOTSG00005010674	pip4k2aa (ENSOTSG00005010678)	ENSOTSG00005010776	ENSOTSG00005010780	ENSOTSG00005010828	BMI1 (ENSOTSG00005010856)	spag6 (ENSOTSG00005010857)	pdia4 (ENSOTSG00005010866) #21	ezh2 (ENSOTSG00005010872) #22	CUL1 (ENSOTSG00005011154) #23	cntnap2a (ENSOTSG00005011191)	ENSOTSG00005011192	tpk1 (ENSOTSG00005011193) #25	ENSOTSG00005011194	ENSOTSG00005011195	ENSOTSG00005011196	ENSOTSG00005011198	relch (ENSOTSG00005011245)	pign (ENSOTSG00005023896)	ENSOTSG00005023908	ENSOTSG00005023913	ENSOTSG00005023914	ENSOTSG00005023926	ENSOTSG00005023927
Rainbow trout	MODERN SPECIES	2	rpl22l1 (ENSOMYG00000005239)	ENSOMYG00000005327	ENSOMYG00000005408	ENSOMYG00000005432	c8g (ENSOMYG00000005498)	msrb2 (ENSOMYG00000005526)	pip4k2aa (ENSOMYG00000006285)	SKIDA1 (ENSOMYG00000006754)	ENSOMYG00000077825	ENSOMYG00000006778	commd3 (ENSOMYG00000006841)	ENSOMYG00000006883	spag6 (ENSOMYG00000006975)	ENSOMYG00000007041	pdia4 (ENSOMYG00000007216) #21	ezh2 (ENSOMYG00000008028) #22	ENSOMYG00000050125	CUL1 (ENSOMYG00000008809) #23	CNTNAP2 (ENSOMYG00000063615) ##24	ENSOMYG00000068320	ENSOMYG00000048276	tpk1 (ENSOMYG00000009021) #25	ENSOMYG00000009066	ENSOMYG00000061730	ENSOMYG00000033036	ENSOMYG00000061959	ENSOMYG00000009080	ENSOMYG00000009112	relch (ENSOMYG00000010535)	ENSOMYG00000055085	PIGN (ENSOMYG00000017034)
Huchen	MODERN SPECIES	573	ENSHHUG00000001107	ENSHHUG00000001844	ENSHHUG00000003656	rpl22l1 (ENSHHUG00000003703)	cldn11b (ENSHHUG00000003719)	ENSHHUG00000003728	c8g (ENSHHUG00000003743)	msrb2 (ENSHHUG00000003759)	pip4k2aa (ENSHHUG00000003791)	ENSHHUG00000004130	commd3 (ENSHHUG00000004151)	ENSHHUG00000004166	spag6 (ENSHHUG00000004224)	ENSHHUG00000004342	pdia4 (ENSHHUG00000004351) #21	ezh2 (ENSHHUG00000004396) #22	CUL1 (ENSHHUG00000004547) #23	cntnap2a (ENSHHUG00000004616)	ENSHHUG00000004624 ##24	ENSHHUG00000004634
Salmoninae	ANCESTRAL SPECIES	470	ENSGT00940000155893.a	ENSGT00940000162952.d.b.a.a	ENSGT00940000177048	ENSGT00970000193381.a.a.c.b.a.a.b.a.a.a	ENSGT01050000244868.d	ENSGT00940000155240.B.d.b	ENSGT00940000157476	ENSGT00940000156508.h.b	ENSGT00940000156508.h.a.b	ENSGT00940000153451.a.b	ENSGT00940000157711.e.b	ENSGT00390000015971.h	ENSGT00940000156042.g.b	ENSGT00900000141099.l	ENSGT00940000157738.i #21	ENSGT00940000155013.ab #22	ENSGT00970000193381.a.a.c.b.a.a.b.a.a.b	ENSGT00390000016016.A.v #25	ENSGT00390000001319.n
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00940000154509.ad.a	ENSGT00940000155893.a	ENSGT00940000162952.d.b.a.a	ENSGT00940000177048	ENSGT00970000193381.a.a.c.b.a.a.b.a.a.a	ENSGT01050000244868.d.d	ENSGT00940000155240.B.d.b	ENSGT00940000157476	ENSGT00940000156508.h.b	ENSGT00940000153451.a.b.c	ENSGT00940000157711.e.b	ENSGT00390000015971.h	ENSGT00940000156042.g.b	ENSGT00900000141099.l	ENSGT00940000157738.i #21	ENSGT00940000155013.ab #22	ENSGT00970000193381.a.a.c.b.a.a.b.a.a.b	ENSGT00940000154516.a.b.a.b ##24	ENSGT00390000016016.A.v #25	ENSGT00390000001319.n	ENSGT00940000168990.d	ENSGT00390000004385.s	ENSGT00940000158224.j	ENSGT00940000159542.c.b	ENSGT00530000063529.A.e.b	ENSGT00940000158055.g	ENSGT00730000111111.q.b	ENSGT00730000111111.q.a.a	ENSGT00390000012731.a.a.g	ENSGT00500000044852.a.a.a.g.a.a	ENSGT00940000154574.c.t
Salmo	ANCESTRAL SPECIES	67	ENSGT00940000154509.ad.a	ENSGT00940000155893.a	ENSGT00940000162952.d.b.a.a	ENSGT00940000177048	ENSGT00970000193381.a.a.c.b.a.a.b.a.a.a	ENSGT01050000244868.d.d	ENSGT00940000155240.B.d.b	ENSGT00940000157476	ENSGT00940000156508.h.b	ENSGT00940000153451.a.b.c	ENSGT00940000157711.e.b	ENSGT00390000015971.h	ENSGT00940000156042.g.b	ENSGT00900000141099.l	ENSGT00940000157738.i #21	ENSGT00940000155013.ab #22	ENSGT00970000193381.a.a.c.b.a.a.b.a.a.b	ENSGT00940000178542	ENSGT00390000016016.A.v #25	ENSGT00390000001319.n	ENSGT00940000168990.d	ENSGT00390000004385.s	ENSGT00940000158224.j	ENSGT00940000159542.c.b	ENSGT00530000063529.A.e.b	ENSGT00940000158055.g	ENSGT00730000111111.q.a.a	ENSGT00390000012731.a.a.g	ENSGT01010000224030	ENSGT00500000044852.a.a.a.g.b	ENSGT00940000154574.c.t
Atlantic salmon	MODERN SPECIES	21	ENSSSAG00000079836	ENSSSAG00000079840	ENSSSAG00000101685	ENSSSAG00000079841	ENSSSAG00000079876	ENSSSAG00000105649	pip4k2aa (ENSSSAG00000079949)	ENSSSAG00000097947	ENSSSAG00000103627	SKIDA1 (ENSSSAG00000089826)	ENSSSAG00000080099	commd3 (ENSSSAG00000080101)	bmi1a (ENSSSAG00000080109)	spag6 (ENSSSAG00000080120)	pdia4 (ENSSSAG00000047514) #21	ezh2 (ENSSSAG00000048075) #22	ENSSSAG00000052183	CNTNAP2 (ENSSSAG00000009466) ##24	ENSSSAG00000120789	ENSSSAG00000047034	tpk1 (ENSSSAG00000047382) #25	sec61g (ENSSSAG00000047374)	ENSSSAG00000047368	ENSSSAG00000088214	relch (ENSSSAG00000111082)	ENSSSAG00000047055	ENSSSAG00000118640	ENSSSAG00000081772	ENSSSAG00000111737	ENSSSAG00000052533	ENSSSAG00000052260
River trout	MODERN SPECIES	36	ENSSTUG00000030434	ENSSTUG00000030432	ENSSTUG00000030429	ENSSTUG00000030410	msrb2 (ENSSTUG00000030397)	ARMC3 (ENSSTUG00000030221)	ENSSTUG00000030199	pip4k2aa (ENSSTUG00000030185)	SKIDA1 (ENSSTUG00000030180)	ENSSTUG00000030177	ENSSTUG00000030127	commd3 (ENSSTUG00000030081)	ENSSTUG00000030018	spag6 (ENSSTUG00000029944)	pdia4 (ENSSTUG00000029746) #21	ezh2 (ENSSTUG00000029543) #22	ENSSTUG00000029286	ENSSTUG00000029271	tpk1 (ENSSTUG00000029241) #25	sec61g (ENSSTUG00000029237)	ENSSTUG00000027832	relch (ENSSTUG00000025736)	hnf4g (ENSSTUG00000025652)	ENSSTUG00000025620	ZFHX4 (ENSSTUG00000025406)	ENSSTUG00000025391	ENSSTUG00000025381	amer2 (ENSSTUG00000025210)	mtmr6 (ENSSTUG00000023061)	nup58 (ENSSTUG00000022930)	ropn1l (ENSSTUG00000022917)
Huchen	MODERN SPECIES	3133															pdia4 (ENSHHUG00000001876) #21	ezh2 (ENSHHUG00000001835) #22	ENSHHUG00000001832	ENSHHUG00000001830 ##24	cntnap2a (ENSHHUG00000001818)
Northern pike	MODERN SPECIES	20	ENSELUG00000011430	cldn11b (ENSELUG00000011411)	ENSELUG00000031703	ptgdsb.1 (ENSELUG00000000406)	ENSELUG00000011385	c8g (ENSELUG00000011274)	msrb2 (ENSELUG00000011233)	ENSELUG00000000394	pip4k2aa (ENSELUG00000011199)	SKIDA1 (ENSELUG00000011078)	ENSELUG00000011051	commd3 (ENSELUG00000010894)	spag6 (ENSELUG00000010849)	ENSELUG00000010794	pdia4 (ENSELUG00000010710) #21	ezh2 (ENSELUG00000010686) #22	CUL1 (ENSELUG00000010614) #23	ENSELUG00000010346	CNTNAP2 (ENSELUG00000001477) ##24	ENSELUG00000033552	tpk1 (ENSELUG00000010327) #25	sec61g (ENSELUG00000010284)	ENSELUG00000010220	ENSELUG00000010187	ENSELUG00000010169	relch (ENSELUG00000010055)	pign (ENSELUG00000009610)	GPR141 (ENSELUG00000034261)	hnf4g (ENSELUG00000000352)	pex2 (ENSELUG00000009530)	ZFHX4 (ENSELUG00000009500)
Acanthomorphata	ANCESTRAL SPECIES	111	ENSGT00940000154673.a.d.a	ENSGT00730000111052	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317	ENSGT00940000168188	ENSGT00940000172071	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00950000183098.b.a.b	ENSGT00530000064112.b.b	ENSGT00530000064112.b.a.a	ENSGT00940000166207	ENSGT00390000006738.b	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a
Cod	MODERN SPECIES	15	ENSGMOG00000026949	CDH18 (ENSGMOG00000036837)	CDH12 (ENSGMOG00000024693)	CDH10 (ENSGMOG00000005335)	CDH6 (ENSGMOG00000007956)	DROSHA (ENSGMOG00000036656)	ENSGMOG00000000504	ENSGMOG00000036202	KBTBD2 (ENSGMOG00000035934)	ENSGMOG00000018242	LSM5 (ENSGMOG00000018235)	PSME2 (ENSGMOG00000018140)	ENSGMOG00000036140	ENSGMOG00000032880	EMC9 (ENSGMOG00000005172)	ENSGMOG00000018117 #22	ENSGMOG00000018095 #23	cldn11b (ENSGMOG00000004038)	ENSGMOG00000004054	ENSGMOG00000004133	ENSGMOG00000023323	ENSGMOG00000010530	ENSGMOG00000019500	ENSGMOG00000007213	ENSGMOG00000014611	ENSGMOG00000014711	SOCS6 (ENSGMOG00000020222)	ENSGMOG00000006072	ENSGMOG00000033906	cd226 (ENSGMOG00000026449)	rdh10a (ENSGMOG00000005453)
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT01030000235211	ENSGT00940000154187.a.b.a	ENSGT00940000154187.a.a	ENSGT00940000154673.a.d.a	ENSGT00730000111052	ENSGT00730000111317	ENSGT00940000168188	ENSGT00940000172071	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00950000183098.b.a.b	ENSGT00530000064112.b.a.a	ENSGT00940000166207	ENSGT00390000006738.b	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Pinecone sodierfish	MODERN SPECIES	12	and1 (ENSMMDG00005021641)	cops9 (ENSMMDG00005021640)	otos (ENSMMDG00005021637)	apodb (ENSMMDG00005021635)	ARHGAP21 (ENSMMDG00005021602)	ENSMMDG00005021428	enkur (ENSMMDG00005021421)	THNSL1 (ENSMMDG00005021418)	PTCHD3 (ENSMMDG00005021415)	GPR158 (ENSMMDG00005021409)	lsm5 (ENSMMDG00005021403)	psme2 (ENSMMDG00005021395)	RNF31 (ENSMMDG00005021391)	ENSMMDG00005021390	emc9 (ENSMMDG00005021387)	ezh2 (ENSMMDG00005021370) #22	cul1a (ENSMMDG00005021328) #23	cldn11b (ENSMMDG00005021322)	ENSMMDG00005021318	rpl22l1 (ENSMMDG00005021313)	ENSMMDG00005021310	ENSMMDG00005021256	ENSMMDG00005020772	ENSMMDG00005020737	ENSMMDG00005020734	ENSMMDG00005020729	eif2s3 (ENSMMDG00005020684)	klhl15 (ENSMMDG00005020671)	apoob (ENSMMDG00005020668)	sat1b (ENSMMDG00005020664)	acot9.2 (ENSMMDG00005020007)
Percomorphaceae	ANCESTRAL SPECIES	67															ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293
Tiger tail seahorse	MODERN SPECIES	285	vps41 (ENSHCOG00000001099)	POU6F2 (ENSHCOG00000001117)	ENSHCOG00000001124	ENSHCOG00000001133	ankha (ENSHCOG00000001143)	myca (ENSHCOG00000001185)	fam49bb (ENSHCOG00000001203)	eef1a1l3 (ENSHCOG00000001215)	ASAP1 (ENSHCOG00000001229)	NFX1 (ENSHCOG00000001235)	ENSHCOG00000001239	smarcd3b (ENSHCOG00000001249)	CHPF2 (ENSHCOG00000001258)	abcf2a (ENSHCOG00000001268)	ENSHCOG00000001277	ezh2 (ENSHCOG00000001287) #22
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00940000157289.a	ENSGT00940000158071	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a.d	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.d	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000178015	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00940000154992.a.b.d.b	ENSGT00950000183269	ENSGT00940000154992.a.b.c.a	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000178015	ENSGT01100000263483.A.g.a	ENSGT01100000263541.a.b.l.a	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00940000158071	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a.d	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00940000154992.a.b.d.b	ENSGT00950000183269	ENSGT00940000154992.a.b.c.a	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000154533.a.a.b	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00960000187826	ENSGT00940000162952.d.b.a	ENSGT00390000013820	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456
Anabantaria	ANCESTRAL SPECIES	22																ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00960000187826	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00940000158212.A	ENSGT00940000155003.e.a	ENSGT00940000157041.b	ENSGT00940000157512.j	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000154673.a.d.a	ENSGT00730000111052	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317	ENSGT00940000168188	ENSGT00940000172071	ENSGT00940000156069	ENSGT00390000010255	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00960000187826	ENSGT00940000162952.d.b.a	ENSGT00390000013820	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000156456	ENSGT00730000111293
Climbing perch	MODERN SPECIES	11	ENSATEG00000022602	ENSATEG00000022224	CDH18 (ENSATEG00000022201)	ENSATEG00000022116	CDH10 (ENSATEG00000022057)	CDH6 (ENSATEG00000022041)	DROSHA (ENSATEG00000021939)	MC4R (ENSATEG00000021918)	ENSATEG00000021913	ENSATEG00000021884	RNF152 (ENSATEG00000021870)	ENSATEG00000027495	ENSATEG00000021859	ENSATEG00000021849	ENSATEG00000021809	ENSATEG00000021762 #22	ENSATEG00000021721 #23	ENSATEG00000028190	ENSATEG00000021701	cldn11b (ENSATEG00000021669)	ENSATEG00000021661	rpl22l1 (ENSATEG00000021655)	ENSATEG00000021651	TNIK (ENSATEG00000021510)	PLD1 (ENSATEG00000021446)	ENSATEG00000029348	ENSATEG00000021401	ENSATEG00000021387	EIF2S3 (ENSATEG00000021353)	KLHL15 (ENSATEG00000021306)	apoob (ENSATEG00000021274)
Siamese fighting fish	MODERN SPECIES	15	ggh (ENSBSLG00000016457)	ENSBSLG00000016463	EPC1 (ENSBSLG00000016701)	ENSBSLG00000017035	CDH18 (ENSBSLG00000017221)	cdh12a (ENSBSLG00000018623)	CDH10 (ENSBSLG00000018673)	CDH6 (ENSBSLG00000019071)	drosha (ENSBSLG00000021194)	mc4r (ENSBSLG00000021537)	CDH20 (ENSBSLG00000021743)	RNF152 (ENSBSLG00000021891)	ENSBSLG00000021905	kbtbd2 (ENSBSLG00000021949)	avl9 (ENSBSLG00000022008)	ezh2 (ENSBSLG00000022537) #22	cul1a (ENSBSLG00000022730) #23	ENSBSLG00000022758	ENSBSLG00000022763	ENSBSLG00000022762	cldn11b (ENSBSLG00000022802)	rpl22l1 (ENSBSLG00000022834)	ENSBSLG00000022874	TNIK (ENSBSLG00000022922)	PLD1 (ENSBSLG00000023303)	ENSBSLG00000023424	ENSBSLG00000023425	ENSBSLG00000023430	ENSBSLG00000023432	eif2s3 (ENSBSLG00000023435)	klhl15 (ENSBSLG00000023568)
Zig-zag eel	MODERN SPECIES	84	ENSMAMG00000007995	ENSMAMG00000026304	ENSMAMG00000027419	ENSMAMG00000008024	ENSMAMG00000008050	ENSMAMG00000027653	ENSMAMG00000008116	ENSMAMG00000008156	ENSMAMG00000008162	ENSMAMG00000008191	ENSMAMG00000008210	rps6ka3b (ENSMAMG00000008244)	pdha1b (ENSMAMG00000008314)	ENSMAMG00000008372	ENSMAMG00000026991	ENSMAMG00000008409 #22	ENSMAMG00000008465 #23	ENSMAMG00000028670	ENSMAMG00000008523	ENSMAMG00000027758	ENSMAMG00000024458	cldn11b (ENSMAMG00000008567)	ENSMAMG00000008571	rpl22l1 (ENSMAMG00000027001)	ENSMAMG00000025758	TNIK (ENSMAMG00000008652)	PLD1 (ENSMAMG00000008804)	ENSMAMG00000024768	ENSMAMG00000008864	ENSMAMG00000026947	EIF2S3 (ENSMAMG00000008913)
Carangaria	ANCESTRAL SPECIES	21	ENSGT00940000156770	ENSGT00940000163747	ENSGT00940000157289.a	ENSGT00940000158071	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a.d	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.d	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000178015	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00960000187826	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT01050000244939.a.a.a.d	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00940000156770	ENSGT00940000169201	ENSGT00390000006452.a	ENSGT00940000159115	ENSGT00390000000706	ENSGT01070000253760.b.a.a.a.b.d	ENSGT00400000022103.a	ENSGT00940000156304.c.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00730000111293	ENSGT00940000156456	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w
Tongue sole	MODERN SPECIES	13	si:ch211-140b10.6 (ENSCSEG00000016484)	urad (ENSCSEG00000016481)	pdx1 (ENSCSEG00000016475)	urad (ENSCSEG00000016472)	urad (ENSCSEG00000016469)	ENSCSEG00000016456	pan3 (ENSCSEG00000016421)	rmc1 (ENSCSEG00000016397)	CLVS1 (ENSCSEG00000016382)	ASPH (ENSCSEG00000016331)	ENSCSEG00000016300	ssr1 (ENSCSEG00000016267)	scn5lab (ENSCSEG00000016240)	ENSCSEG00000016211	ENSCSEG00000016171	ezh2 (ENSCSEG00000016120) #22	cul1a (ENSCSEG00000016078) #23	ENSCSEG00000016067	cldn11b (ENSCSEG00000016055)	ENSCSEG00000016043	rpl22l1 (ENSCSEG00000015879)	ENSCSEG00000015853	TNIK (ENSCSEG00000015735)	PLD1 (ENSCSEG00000015688)	ENSCSEG00000015676	ENSCSEG00000015669	ENSCSEG00000015658	eif2s3 (ENSCSEG00000015632)	klhl15 (ENSCSEG00000015599)	ENSCSEG00000015582	apoob (ENSCSEG00000015570)
Turbot	MODERN SPECIES	13	ENSSMAG00000011771	ENSSMAG00000011699	ENSSMAG00000011647	ENSSMAG00000011543	ENSSMAG00000011527	ENSSMAG00000011510	ENSSMAG00000011401	ENSSMAG00000011374	ENSSMAG00000033176	ENSSMAG00000027952	ENSSMAG00000008483	ENSSMAG00000008416	ENSSMAG00000027337	ENSSMAG00000030522	ENSSMAG00000008399	ENSSMAG00000008327 #22	ENSSMAG00000008278 #23	ENSSMAG00000026407	cldn11b (ENSSMAG00000023927)	ENSSMAG00000008228	rpl22l1 (ENSSMAG00000008211)	ENSSMAG00000031145	TNIK (ENSSMAG00000008153)	PLD1 (ENSSMAG00000010266)	ENSSMAG00000010241	ENSSMAG00000010225	EIF2S3 (ENSSMAG00000010192)	KLHL15 (ENSSMAG00000010151)	apoob (ENSSMAG00000030113)	SAT1 (ENSSMAG00000010106)	acot9.2 (ENSSMAG00000010044)
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00940000163747	ENSGT00940000157289.a	ENSGT00940000158071	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a.d	ENSGT00940000157533	ENSGT00390000009127.j	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00400000022103.a	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000178015	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00960000187826	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293
Seriola	ANCESTRAL SPECIES	93	ENSGT01020000230622.h	ENSGT00940000163670.b.a.z.a.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT00940000179170	ENSGT01030000234839	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i	ENSGT00390000006738.b	ENSGT00940000166207	ENSGT00530000064112.b.a.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Yellowtail amberjack	MODERN SPECIES	3269													ENSSLDG00000009960	ENSSLDG00000009934	ENSSLDG00000009831	ezh2 (ENSSLDG00000009699) #22	cul1a (ENSSLDG00000009551) #23	ENSSLDG00000009523	ENSSLDG00000009491	cldn11b (ENSSLDG00000009470)	ENSSLDG00000009454	rpl22l1 (ENSSLDG00000009433)	ENSSLDG00000009425	TNIK (ENSSLDG00000009349)	PLD1 (ENSSLDG00000009257)	ENSSLDG00000009061	ENSSLDG00000009013	ENSSLDG00000008919	ENSSLDG00000008895	eif2s3 (ENSSLDG00000008861)	klhl15 (ENSSLDG00000008828)
Greater amberjack	MODERN SPECIES	232	ENSSDUG00000002467	ENSSDUG00000002482	ENSSDUG00000002504	ENSSDUG00000002541	ENSSDUG00000002577	ENSSDUG00000002708	vipr2 (ENSSDUG00000002788)	ENSSDUG00000002809	ENSSDUG00000002821	msl2b (ENSSDUG00000002830)	tnfsf10 (ENSSDUG00000002839)	nceh1b.1 (ENSSDUG00000002875)	emc9 (ENSSDUG00000003018)	irf9 (ENSSDUG00000003037)	ENSSDUG00000003086	ezh2 (ENSSDUG00000003166) #22	cul1a (ENSSDUG00000003204) #23	ENSSDUG00000003253	ENSSDUG00000003267	cldn11b (ENSSDUG00000003286)	ENSSDUG00000003298	rpl22l1 (ENSSDUG00000003315)	ENSSDUG00000003339	TNIK (ENSSDUG00000003392)	PLD1 (ENSSDUG00000003806)	ENSSDUG00000003923	ENSSDUG00000003976	ENSSDUG00000003953	eif2s3 (ENSSDUG00000003993)	klhl15 (ENSSDUG00000004040)	apoob (ENSSDUG00000004092)
Barramundi perch	MODERN SPECIES	84	ENSLCAG00010025233	ENSLCAG00010025234	ENSLCAG00010025245	ENSLCAG00010025259	ENSLCAG00010025265	ENSLCAG00010025268	ENSLCAG00010025271	ENSLCAG00010025274	ENSLCAG00010025279	ENSLCAG00010025282	ENSLCAG00010025284	ENSLCAG00010025289	ENSLCAG00010025293	ENSLCAG00010025298	ENSLCAG00010025301	ezh2 (ENSLCAG00010025323) #22	cul1a (ENSLCAG00010025361) #23	ENSLCAG00010025385	ENSLCAG00010025387	ENSLCAG00010025388	cldn11b (ENSLCAG00010025391)	ENSLCAG00010025400	rpl22l1 (ENSLCAG00010025405)	ENSLCAG00010025413	TNIK (ENSLCAG00010025747)	PLD1 (ENSLCAG00010026279)	ENSLCAG00010026523	ENSLCAG00010026524	ENSLCAG00010026527	ENSLCAG00010026530	eif2s3 (ENSLCAG00010026535)
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00940000154992.a.b.d.a.b	ENSGT00950000183269	ENSGT00940000154992.a.b.d.b	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT01100000263483.A.g.a	ENSGT01100000263541.a.b.l.a	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000155013 #22
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002130	znhit1 (ENSTNIG00000019748)	sars1 (ENSTNIG00000002133)	ENSTNIG00000002134	ENSTNIG00000000642	ENSTNIG00000002136	ENSTNIG00000002137	ENSTNIG00000002139 #22	ssr1 (ENSTNIG00000002140)	ENSTNIG00000002141 #22	pctp (ENSTNIG00000002142)	rtn4a (ENSTNIG00000002143)	ENSTNIG00000002144	ENSTNIG00000002145	ENSTNIG00000002146	ENSTNIG00000006222 #22	ENSTNIG00000002147	ezh2 (ENSTNIG00000004203) #22	stk38a (ENSTNIG00000002148)	stk35 (ENSTNIG00000002149)	ENSTNIG00000002150	ENSTNIG00000002151	ENSTNIG00000000176	fmr1 (ENSTNIG00000002152)	ENSTNIG00000002153	dnajc25 (ENSTNIG00000002154)	HDAC6 (ENSTNIG00000002155)	ENSTNIG00000002156	ENSTNIG00000002157	ENSTNIG00000002159	ENSTNIG00000002161
Tetraodon	MODERN SPECIES	26	tbl1xr1b (ENSTNIG00000002296)	ENSTNIG00000002295	ENSTNIG00000000281	ENSTNIG00000002292	ENSTNIG00000001288	ENSTNIG00000000078	ENSTNIG00000000643	ddx17 (ENSTNIG00000002291)	ENSTNIG00000002289	polr3f (ENSTNIG00000002288)	ENSTNIG00000002287	ENSTNIG00000002285	hccsb (ENSTNIG00000002284)	ENSTNIG00000019620	ENSTNIG00000002282	ENSTNIG00000002281 #22	ENSTNIG00000002276	NARS1 (ENSTNIG00000002275)	NARS1 (ENSTNIG00000002274)	ENSTNIG00000002272	nup50 (ENSTNIG00000002271)	ENSTNIG00000002269	wnt10b (ENSTNIG00000002268)	st3gal7 (ENSTNIG00000002267)	ENTPD7 (ENSTNIG00000002266)	ENSTNIG00000002265	SNX1 (ENSTNIG00000002264)	ENSTNIG00000002262	ENSTNIG00000002261	ENSTNIG00000002259	ENSTNIG00000000064
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001097	ENSTNIG00000001865	ENSTNIG00000001864	ENSTNIG00000001863	ENSTNIG00000001862	ENSTNIG00000001860	tgfbr1b (ENSTNIG00000001859)	ENSTNIG00000001646	DUSP26 (ENSTNIG00000001857)	ENSTNIG00000001856	dtd2 (ENSTNIG00000000232)	ENSTNIG00000001854	ENSTNIG00000001853	lhx9 (ENSTNIG00000001851)	ENSTNIG00000001850	ENSTNIG00000001849 #22	ssr1 (ENSTNIG00000001848)	ENSTNIG00000001847	ENSTNIG00000001846	cul4b (ENSTNIG00000001845)	sars1 (ENSTNIG00000001844)	ENSTNIG00000001843	ENSTNIG00000001842	ENSTNIG00000002241	ENSTNIG00000001840	znf395b (ENSTNIG00000001839)	cdipt (ENSTNIG00000001838)	ENSTNIG00000001837	ENSTNIG00000001836	ENSTNIG00000001835	nucb1 (ENSTNIG00000001833)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	lypla2 (ENSTNIG00000011332)	sfpq (ENSTNIG00000011331)	zmym4.1 (ENSTNIG00000011330)	ENSTNIG00000001276	cry3a (ENSTNIG00000011329)	ENSTNIG00000000304	ak2 (ENSTNIG00000011328)	ndufs5 (ENSTNIG00000006930)	MACF1 (ENSTNIG00000006990)	bmp8a (ENSTNIG00000006989)	gsk3aa (ENSTNIG00000006988)	erf (ENSTNIG00000006987)	POU2F2 (ENSTNIG00000006986)	ENSTNIG00000003917	ENSTNIG00000005121	ezh2 (ENSTNIG00000004151) #22	ssr1 (ENSTNIG00000004152)	ENSTNIG00000004153	ENSTNIG00000005764	ENSTNIG00000001248	ENSTNIG00000011327	sepsecs (ENSTNIG00000011326)	PPARGC1A (ENSTNIG00000011325)	ENSTNIG00000002174	gba3 (ENSTNIG00000002058)	KCNIP4 (ENSTNIG00000011324)	sec24d (ENSTNIG00000011323)	SYNPO2 (ENSTNIG00000011322)	myoz2a (ENSTNIG00000011321)	USP53 (ENSTNIG00000011320)	PTPRD (ENSTNIG00000011319)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004241	ENSTNIG00000004240	ENSTNIG00000004239	eif3eb (ENSTNIG00000004238)	ENSTNIG00000004232	GABRR2 (ENSTNIG00000004231)	ENSTNIG00000004230	ENSTNIG00000004229	slc4a1a (ENSTNIG00000004273)	MIEN1 (ENSTNIG00000004221)	ENSTNIG00000004220	nhp2 (ENSTNIG00000004219)	ENSTNIG00000000669	ENSTNIG00000001509	ttl (ENSTNIG00000004207)	ezh2 (ENSTNIG00000002191) #22	ssr1 (ENSTNIG00000003328)	ENSTNIG00000000820	ENSTNIG00000004199	ENSTNIG00000004198	trim33 (ENSTNIG00000004197)	slc66a1 (ENSTNIG00000004196)	nr1h5 (ENSTNIG00000004195)	ENSTNIG00000004194	TAAR1 (ENSTNIG00000000404)	stard10 (ENSTNIG00000004193)	ENSTNIG00000002324	LONRF1 (ENSTNIG00000004186)	hdlbpa (ENSTNIG00000004185)	ccm2 (ENSTNIG00000004176)	fam167ab (ENSTNIG00000000402)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000003312	ENSTNIG00000002235	ENSTNIG00000002236	gch2 (ENSTNIG00000000301)	rrp15 (ENSTNIG00000002237)	ENSTNIG00000002238	ENSTNIG00000001072	ENSTNIG00000002239	ENSTNIG00000002240	ENSTNIG00000001332	ENSTNIG00000002244	ENSTNIG00000002245	ENSTNIG00000002246	KIFC3 (ENSTNIG00000002248)	ENSTNIG00000002249	ENSTNIG00000002250 #22	LRRC58 (ENSTNIG00000002251)	drd4b (ENSTNIG00000002252)	camk1gb (ENSTNIG00000001925)	ENSTNIG00000002323	ENSTNIG00000002255	ENSTNIG00000002256	wls (ENSTNIG00000002257)	ENSTNIG00000000695	ENSTNIG00000002258	ENSTNIG00000000064	ENSTNIG00000002259	ENSTNIG00000002261	ENSTNIG00000002262	SNX1 (ENSTNIG00000002264)	ENSTNIG00000002265
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000019689	ENSTNIG00000019536	ENSTNIG00000000452	ENSTNIG00000019832	rps21 (ENSTNIG00000019467)	ENSTNIG00000019717	ENSTNIG00000019438	ENSTNIG00000019558	ENSTNIG00000019559	p2rx3b (ENSTNIG00000019560)	ENSTNIG00000019572	ENSTNIG00000019573	ENSTNIG00000019574	ENSTNIG00000019569	ENSTNIG00000019713	ENSTNIG00000019668 #22	ccn6 (ENSTNIG00000019459)	ENSTNIG00000019729	ANKMY2 (ENSTNIG00000019466)	ENSTNIG00000001734	ENSTNIG00000019714	ENSTNIG00000019660	st6gal2a (ENSTNIG00000001716)	ENSTNIG00000019848	ENSTNIG00000019829	ENSTNIG00000001643	cox4i1 (ENSTNIG00000000609)	ENSTNIG00000019677	tfpi2 (ENSTNIG00000019726)	ENSTNIG00000019722	PPP1CA (ENSTNIG00000019567)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002153	fmr1 (ENSTNIG00000002152)	ENSTNIG00000000176	ENSTNIG00000002151	ENSTNIG00000002150	stk35 (ENSTNIG00000002149)	stk38a (ENSTNIG00000002148)	ezh2 (ENSTNIG00000004203) #22	ENSTNIG00000002147	ENSTNIG00000006222 #22	ENSTNIG00000002146	ENSTNIG00000002145	ENSTNIG00000002144	rtn4a (ENSTNIG00000002143)	pctp (ENSTNIG00000002142)	ENSTNIG00000002141 #22	ssr1 (ENSTNIG00000002140)	ENSTNIG00000002139 #22	ENSTNIG00000002137	ENSTNIG00000002136	ENSTNIG00000000642	ENSTNIG00000002134	sars1 (ENSTNIG00000002133)	znhit1 (ENSTNIG00000019748)	ENSTNIG00000002130	ldb3b (ENSTNIG00000002129)	ciao2a (ENSTNIG00000002128)	ENSTNIG00000002127	ENSTNIG00000002126	ENSTNIG00000002125	ENSTNIG00000002124
Tetraodon	MODERN SPECIES	26	SLC1A3 (ENSTNIG00000005166)	palm1b (ENSTNIG00000005153)	ENSTNIG00000005149	ENSTNIG00000005974	ENSTNIG00000005147	ENSTNIG00000005146	slc5a9 (ENSTNIG00000005145)	slc5a9 (ENSTNIG00000005144)	ENSTNIG00000001619	ENSTNIG00000005143	hoga1 (ENSTNIG00000005132)	MORN4 (ENSTNIG00000005131)	zdhhc17 (ENSTNIG00000005128)	csrp2 (ENSTNIG00000005127)	e2f7 (ENSTNIG00000005126)	ENSTNIG00000005122 #22	ENSTNIG00000000661	dock11 (ENSTNIG00000005120)	haus4 (ENSTNIG00000005119)	fxr2 (ENSTNIG00000005118)	ENSTNIG00000005116	ENSTNIG00000005115	mecp2 (ENSTNIG00000005114)	slc26a5 (ENSTNIG00000005110)	psmc2 (ENSTNIG00000005109)	dnajc2 (ENSTNIG00000005108)	pmpcb (ENSTNIG00000005107)	ENSTNIG00000004925	ENSTNIG00000005105	PURG (ENSTNIG00000001673)	ENSTNIG00000001806
Tetraodon	MODERN SPECIES	26	crkl (ENSTNIG00000006153)	ULK1 (ENSTNIG00000006154)	MMP17 (ENSTNIG00000006155)	ENSTNIG00000006156	TAAR1 (ENSTNIG00000001471)	TAAR1 (ENSTNIG00000000218)	TAAR1 (ENSTNIG00000005193)	TAAR1 (ENSTNIG00000001226)	ENSTNIG00000006197	ENSTNIG00000006198	ENSTNIG00000006199	galcb (ENSTNIG00000006200)	ENSTNIG00000006209	ENSTNIG00000006210	ENSTNIG00000006211	ezh2 (ENSTNIG00000001819) #22	ssr1 (ENSTNIG00000001825)	si:ch211-225p5.8 (ENSTNIG00000006224)	TRAK1 (ENSTNIG00000006230)	ENSTNIG00000006231	panx1b (ENSTNIG00000006242)	ENSTNIG00000006243	bmerb1 (ENSTNIG00000006244)	MPV17L (ENSTNIG00000006245)	ENSTNIG00000006246	ENSTNIG00000006247	gga1 (ENSTNIG00000006248)	ENSTNIG00000006250	ENSTNIG00000001683	ENSTNIG00000006251	ENSTNIG00000006252
Tetraodon	MODERN SPECIES	26	ENSTNIG00000000933	utp4 (ENSTNIG00000002226)	ENSTNIG00000002225	ENSTNIG00000002224	TULP3 (ENSTNIG00000011395)	ENSTNIG00000001225	ENSTNIG00000002222	SCAMP2 (ENSTNIG00000002221)	ENSTNIG00000002220	ENSTNIG00000002219	ENSTNIG00000002198	dyrk1b (ENSTNIG00000002197)	ENSTNIG00000001905	ing2 (ENSTNIG00000000093)	ENSTNIG00000001552	ezh2 (ENSTNIG00000001024) #22	ENSTNIG00000002188	SLC66A2 (ENSTNIG00000002187)	ENSTNIG00000002186	ENSTNIG00000001609	ENSTNIG00000001345	ENSTNIG00000001731	ENSTNIG00000003087	ENSTNIG00000002184	ENSTNIG00000002183	efemp2a (ENSTNIG00000002182)	pnhd (ENSTNIG00000002181)	zdhhc12b (ENSTNIG00000000583)	asns (ENSTNIG00000002179)	ENSTNIG00000002178	bmpr1aa (ENSTNIG00000002177)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000000571	ENSTNIG00000002162	ENSTNIG00000002161	ENSTNIG00000002159	ENSTNIG00000002157	ENSTNIG00000002156	HDAC6 (ENSTNIG00000002155)	dnajc25 (ENSTNIG00000002154)	ENSTNIG00000002153	fmr1 (ENSTNIG00000002152)	ENSTNIG00000000176	ENSTNIG00000002151	ENSTNIG00000002150	stk35 (ENSTNIG00000002149)	stk38a (ENSTNIG00000002148)	ezh2 (ENSTNIG00000004203) #22	ENSTNIG00000002147	ENSTNIG00000006222 #22	ENSTNIG00000002146	ENSTNIG00000002145	ENSTNIG00000002144	rtn4a (ENSTNIG00000002143)	pctp (ENSTNIG00000002142)	ENSTNIG00000002141 #22	ssr1 (ENSTNIG00000002140)	ENSTNIG00000002139 #22	ENSTNIG00000002137	ENSTNIG00000002136	ENSTNIG00000000642	ENSTNIG00000002134	sars1 (ENSTNIG00000002133)
Tetraodon	DUPLICATION
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	pex16 (ENSTNIG00000001894)	ENSTNIG00000001893	TSPAN18 (ENSTNIG00000001891)	LRAT (ENSTNIG00000001890)	lratb.2 (ENSTNIG00000001889)	fga (ENSTNIG00000001888)	ENSTNIG00000002170	dtd2 (ENSTNIG00000000437)	ENSTNIG00000000066	ENSTNIG00000001885	ENSTNIG00000001884	ENSTNIG00000001874	wdr55 (ENSTNIG00000001873)	ENSTNIG00000001872	ENSTNIG00000001871	ENSTNIG00000001870 #22	ENSTNIG00000001869	ENSTNIG00000001868	ENSTNIG00000001867	ENSTNIG00000001097	ENSTNIG00000001865	ENSTNIG00000001864	ENSTNIG00000001863	ENSTNIG00000001862	ENSTNIG00000001860	tgfbr1b (ENSTNIG00000001859)	ENSTNIG00000001646	DUSP26 (ENSTNIG00000001857)	ENSTNIG00000001856	dtd2 (ENSTNIG00000000232)	ENSTNIG00000001854
Tetraodon	MODERN SPECIES	26	ENSTNIG00000000506	wdr33 (ENSTNIG00000002122)	ENSTNIG00000002124	ENSTNIG00000002125	ENSTNIG00000002126	ENSTNIG00000002127	ciao2a (ENSTNIG00000002128)	ldb3b (ENSTNIG00000002129)	ENSTNIG00000002130	znhit1 (ENSTNIG00000019748)	sars1 (ENSTNIG00000002133)	ENSTNIG00000002134	ENSTNIG00000000642	ENSTNIG00000002136	ENSTNIG00000002137	ENSTNIG00000002139 #22	ssr1 (ENSTNIG00000002140)	ENSTNIG00000002141 #22	pctp (ENSTNIG00000002142)	rtn4a (ENSTNIG00000002143)	ENSTNIG00000002144	ENSTNIG00000002145	ENSTNIG00000002146	ENSTNIG00000006222 #22	ENSTNIG00000002147	ezh2 (ENSTNIG00000004203) #22	stk38a (ENSTNIG00000002148)	stk35 (ENSTNIG00000002149)	ENSTNIG00000002150	ENSTNIG00000002151	ENSTNIG00000000176
Tetraodon	MODERN SPECIES	26	ENSTNIG00000000034	ENSTNIG00000019680	ENSTNIG00000019152	ENSTNIG00000019506	ENSTNIG00000001272	ENSTNIG00000001607	ENSTNIG00000001373	borcs7 (ENSTNIG00000018886)	ENSTNIG00000018885	ENSTNIG00000001680	ENSTNIG00000005928	ENSTNIG00000000379	ENSTNIG00000001563	ENSTNIG00000000554	ENSTNIG00000001236	ENSTNIG00000005927 #22	ENSTNIG00000005926	ENSTNIG00000005925	ENSTNIG00000005924	ENSTNIG00000001295	ENSTNIG00000001076	ENSTNIG00000004484	ENSTNIG00000000326	ENSTNIG00000004483	ENSTNIG00000001423	dtd2 (ENSTNIG00000003026)	ENSTNIG00000003025	ENSTNIG00000005939	ENSTNIG00000003024	ENSTNIG00000003023	wnt11 (ENSTNIG00000003022)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001210	ENSTNIG00000006483	ENSTNIG00000001911	pgk1 (ENSTNIG00000001910)	ENSTNIG00000001011	tph2 (ENSTNIG00000001493)	ENSTNIG00000001908	ENSTNIG00000001907	ENSTNIG00000001906	ENSTNIG00000001904	ENSTNIG00000001903	ENSTNIG00000001902	SOX9 (ENSTNIG00000001901)	ENSTNIG00000001900	lrrc59 (ENSTNIG00000000837)	ENSTNIG00000000408 #22	ENSTNIG00000001899	MMP14 (ENSTNIG00000001898)	vmp1 (ENSTNIG00000001897)	ulk3 (ENSTNIG00000011929)	ENSTNIG00000001895	pex16 (ENSTNIG00000001894)	ENSTNIG00000001893	TSPAN18 (ENSTNIG00000001891)	LRAT (ENSTNIG00000001890)	lratb.2 (ENSTNIG00000001889)	fga (ENSTNIG00000001888)	ENSTNIG00000002170	dtd2 (ENSTNIG00000000437)	ENSTNIG00000000066	ENSTNIG00000001885
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00950000183269	ENSGT00940000154992.a.b.d.b	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT01100000263483.A.g.a	ENSGT01100000263541.a.b.l.a	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Ballan wrasse	MODERN SPECIES	247	apoob (ENSLBEG00000016692)	klhl15 (ENSLBEG00000016636)	eif2s3 (ENSLBEG00000016518)	ENSLBEG00000016465	ENSLBEG00000016408	ENSLBEG00000016367	PLD1 (ENSLBEG00000016081)	TNIK (ENSLBEG00000015697)	ENSLBEG00000015561	rpl22l1 (ENSLBEG00000015538)	ENSLBEG00000015504	cldn11b (ENSLBEG00000015436)	ENSLBEG00000015410	ENSLBEG00000015386	cul1a (ENSLBEG00000015207) #23	ezh2 (ENSLBEG00000015099) #22	ENSLBEG00000015062	ENSLBEG00000014953	ENSLBEG00000014902	ssr1 (ENSLBEG00000014869)	ENSLBEG00000014842	scn5lab (ENSLBEG00000014205)	rmc1 (ENSLBEG00000013744)	riok3 (ENSLBEG00000013689)	CLVS1 (ENSLBEG00000013655)	ASPH (ENSLBEG00000013612)	RREB1 (ENSLBEG00000013512)
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00950000183269	ENSGT00940000154992.a.b.d.b	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT01100000263483.A.g.a	ENSGT01100000263541.a.b.l.a	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00950000183269	ENSGT00940000154992.a.b.d.b	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT01100000263483.A.g.a	ENSGT01100000263541.a.b.l.a	ENSGT00730000111912.A.a	ENSGT01060000248740	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17			ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.c.a	ENSGT00950000183269	ENSGT00940000154992.a.b.d.b	ENSGT00400000022103.a	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT01100000263483.A.g.a	ENSGT01100000263541.a.b.l.a	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb
Large yellow croaker	MODERN SPECIES	25								ENSLCRG00005014748	ENSLCRG00005014745	ENSLCRG00005014744	ENSLCRG00005014742	ENSLCRG00005014743	ssr1 (ENSLCRG00005014676)	ENSLCRG00005014675	ENSLCRG00005014673	ezh2 (ENSLCRG00005014624) #22	cul1a (ENSLCRG00005014606) #23	ENSLCRG00005014601	ENSLCRG00005014597	cldn11b (ENSLCRG00005014595)	ENSLCRG00005014593	rpl22l1 (ENSLCRG00005014591)	ENSLCRG00005015633	TNIK (ENSLCRG00005011955)	PLD1 (ENSLCRG00005011121)	ENSLCRG00005011114	ENSLCRG00005011112
European seabass	MODERN SPECIES	27	ENSDLAG00005026805	ENSDLAG00005030470	ENSDLAG00005033596	ENSDLAG00005034478	ENSDLAG00005030179	ENSDLAG00005027902	ENSDLAG00005034864	ENSDLAG00005013829	ENSDLAG00005017499	ENSDLAG00005033455	ENSDLAG00005003728	ENSDLAG00005021572	ENSDLAG00005003517	ENSDLAG00005003733	ENSDLAG00005031056	ENSDLAG00005001891 #22	ENSDLAG00005001957 #23	ENSDLAG00005029940	ENSDLAG00005002032	ENSDLAG00005002029	ENSDLAG00005002036	ENSDLAG00005018441	MAP7D2 (ENSDLAG00005033599)	EIF1AX (ENSDLAG00005002070)	rps6ka3b (ENSDLAG00005002745)	pdha1b (ENSDLAG00005005291)	ENSDLAG00005006633	apoob (ENSDLAG00005034422)	SAT1 (ENSDLAG00005032687)	KLHL15 (ENSDLAG00005007280)	EIF2S3 (ENSDLAG00005007326)
Gilthead seabream	MODERN SPECIES	10	ENSSAUG00010020025	ENSSAUG00010020021	ENSSAUG00010020019	ENSSAUG00010020018	ENSSAUG00010020017	ENSSAUG00010020015	ENSSAUG00010020014	ENSSAUG00010020013	ENSSAUG00010020012	ENSSAUG00010020011	ENSSAUG00010020010	ENSSAUG00010020008	ENSSAUG00010020006	ENSSAUG00010020005	ENSSAUG00010020004	ezh2 (ENSSAUG00010019950) #22	cul1a (ENSSAUG00010019856) #23	ENSSAUG00010019851	ENSSAUG00010019850	cldn11b (ENSSAUG00010019849)	ENSSAUG00010019840	rpl22l1 (ENSSAUG00010019828)	ENSSAUG00010019827	ENSSAUG00010019826	ENSSAUG00010019824	ENSSAUG00010019822	eif2s3 (ENSSAUG00010019821)	klhl15 (ENSSAUG00010019818)	apoob (ENSSAUG00010019817)	SAT1 (ENSSAUG00010019816)	acot9.2 (ENSSAUG00010019801)
Perciformes	ANCESTRAL SPECIES	21															ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Perciformes_a	ANCESTRAL SPECIES																	ENSGT00940000155013 #22
Pike perch	MODERN SPECIES	196		scn5lab (ENSSLUG00000018908)	ssr1 (ENSSLUG00000018896)	ENSSLUG00000018889	ENSSLUG00000018870	ENSSLUG00000018860	ENSSLUG00000018856	ENSSLUG00000018845	zgc:113625 (ENSSLUG00000018838)	zgc:172131 (ENSSLUG00000018832)	zgc:113625 (ENSSLUG00000018827)	ENSSLUG00000018816	ENSSLUG00000018806	ENSSLUG00000018795	ENSSLUG00000018786	ezh2 (ENSSLUG00000018338) #22	ENSSLUG00000018315	ENSSLUG00000018312	RREB1 (ENSSLUG00000018307)	nrn1b (ENSSLUG00000018305)
Cottioidei	ANCESTRAL SPECIES	43	ENSGT00940000155003.e.a	ENSGT00940000157041.b	ENSGT00940000157512.j	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000154673.a.d.a	ENSGT00730000111052	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317	ENSGT00940000172071	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	20			ENSGACG00000005629	galnt11 (ENSGACG00000005586)	ENSGACG00000005580	ENSGACG00000005577	ENSGACG00000005575	mc4r (ENSGACG00000005570)	CDH20 (ENSGACG00000005565)	ENSGACG00000005563	kbtbd2 (ENSGACG00000005557)	avl9 (ENSGACG00000005543)	lsm5 (ENSGACG00000005528)	ENSGACG00000005526	ENSGACG00000005524	ezh2 (ENSGACG00000005519) #22	cul1a (ENSGACG00000005504) #23	PTCHD1 (ENSGACG00000005500)	phex (ENSGACG00000005488)	mbtps2 (ENSGACG00000005478)	smpx (ENSGACG00000005475)	KLHL34 (ENSGACG00000005472)	ENSGACG00000005455	tlr22 (ENSGACG00000005449)	MAP3K15 (ENSGACG00000005435)	ENSGACG00000005424	tfr1b (ENSGACG00000005398)	TNK2 (ENSGACG00000005390)	ENSGACG00000005386	and1 (ENSGACG00000005377)	cops9 (ENSGACG00000005374)
Stickleback	MODERN SPECIES	100															ENSGACG00000012504	ezh2 (ENSGACG00000012507) #22	ENSGACG00000012520	cldn11b (ENSGACG00000012526)	ENSGACG00000012533	rpl22l1 (ENSGACG00000012539)	ENSGACG00000012547	ENSGACG00000012551	TNIK (ENSGACG00000012636)	PLD1 (ENSGACG00000012653)	ENSGACG00000012668	ENSGACG00000012670	ENSGACG00000012676	eif2s3 (ENSGACG00000012678)	ENSGACG00000012719	klhl15 (ENSGACG00000012722)	apoob (ENSGACG00000012729)
Lumpfish	MODERN SPECIES	12	ENSCLMG00005008488	CDH18 (ENSCLMG00005008496)	cdh12a (ENSCLMG00005009087)	CDH10 (ENSCLMG00005009229)	CDH6 (ENSCLMG00005009479)	ENSCLMG00005009809	mc4r (ENSCLMG00005011875)	CDH20 (ENSCLMG00005011889)	RNF152 (ENSCLMG00005012313)	ENSCLMG00005012314	ENSCLMG00005012315	kbtbd2 (ENSCLMG00005012316)	avl9 (ENSCLMG00005012317)	lsm5 (ENSCLMG00005012318)	ENSCLMG00005012319	ezh2 (ENSCLMG00005012338) #22	cul1a (ENSCLMG00005015706) #23	ENSCLMG00005015809	cldn11b (ENSCLMG00005015810)	ENSCLMG00005015812	rpl22l1 (ENSCLMG00005015813)	ENSCLMG00005015816	TNIK (ENSCLMG00005015930)	PLD1 (ENSCLMG00005022514)	ENSCLMG00005022576	ENSCLMG00005022579	ENSCLMG00005022580	ENSCLMG00005022582	eif2s3 (ENSCLMG00005022585)	klhl15 (ENSCLMG00005022591)	apoob (ENSCLMG00005022593)
Ovalentaria	ANCESTRAL SPECIES	21							ENSGT00400000022103.a	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000178878	ENSGT01100000263541.a.b.l.a	ENSGT01100000263483.A.g.a	ENSGT00730000111912.A.a	ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a.d	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.d	ENSGT00940000154992.a.b.c.a	ENSGT00950000183269	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000154533.a.a.b	ENSGT00940000176854	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Oryzias	ANCESTRAL SPECIES	18	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000166938	ENSGT00950000183269	ENSGT00940000154992.a.b.c.a	ENSGT00940000156304.d	ENSGT00950000183163.b	ENSGT00940000156576.i	ENSGT00400000022103.a	ENSGT00940000154775.c.b	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000153251.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00940000158071	ENSGT00530000063853.a.a.b	ENSGT01050000244939.a.a.a.d	ENSGT00940000157533	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.d	ENSGT00950000183163.b	ENSGT00940000156576.i	ENSGT00400000022103.a	ENSGT00940000154775.c.b	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000153251.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000167146	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb
Indian medaka	MODERN SPECIES	15	ENSOMEG00000005513	ENSOMEG00000005531	ENSOMEG00000005552	ENSOMEG00000005563	bmt2 (ENSOMEG00000005594)	TMEM168 (ENSOMEG00000005614)	ptdss2 (ENSOMEG00000005683)	ENSOMEG00000005705	ENSOMEG00000005765	ifitm5 (ENSOMEG00000005780)	ENSOMEG00000005791	avpr1ab (ENSOMEG00000005805)	ppm1h (ENSOMEG00000005843)	ENSOMEG00000005860	cip2a (ENSOMEG00000006050)	ezh2 (ENSOMEG00000006162) #22	cul1a (ENSOMEG00000006238) #23	ENSOMEG00000000148	ENSOMEG00000006329	cldn11b (ENSOMEG00000006354)	ENSOMEG00000000151	rpl22l1 (ENSOMEG00000006390)	ENSOMEG00000006417	tnika (ENSOMEG00000006721)	PLD1 (ENSOMEG00000006869)	ENSOMEG00000006890	ENSOMEG00000006903	ENSOMEG00000006911	ENSOMEG00000006927	ENSOMEG00000006952	ENSOMEG00000006968
Javanese ricefish	MODERN SPECIES	12	ENSOJAG00000013811	scn5lab (ENSOJAG00000013849)	ENSOJAG00000014488	ASPH (ENSOJAG00000014513)	ENSOJAG00000014756	ENSOJAG00000014778	ssr1 (ENSOJAG00000014786)	ENSOJAG00000014849	ENSOJAG00000014853	ENSOJAG00000014886	ENSOJAG00000014942	ENSOJAG00000015040	ENSOJAG00000015050	ENSOJAG00000015062	cip2a (ENSOJAG00000015085)	ezh2 (ENSOJAG00000015177) #22	cul1a (ENSOJAG00000015314) #23	ENSOJAG00000015366	ENSOJAG00000015373	cldn11b (ENSOJAG00000015394)	ENSOJAG00000015402	rpl22l1 (ENSOJAG00000015425)	ENSOJAG00000015496	PLD1 (ENSOJAG00000017535)	ENSOJAG00000018452	ENSOJAG00000018484	eif2s3 (ENSOJAG00000018554)	klhl15 (ENSOJAG00000018890)	ENSOJAG00000018928	sat1b (ENSOJAG00000018975)	ENSOJAG00000018990
Oryzias_a	ANCESTRAL SPECIES	82						ENSGT00940000166938	ENSGT00940000154992.a.b.c.a	ENSGT00940000156304.d	ENSGT00950000183163.b	ENSGT00940000156576.i	ENSGT00400000022103.a	ENSGT00940000154775.c.b	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000153251.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb
Japanese Medaka HdrR	MODERN SPECIES	12	ENSORLG00000024431	nrn1b (ENSORLG00000025427)	fars2 (ENSORLG00000003287)	LYRM4 (ENSORLG00000025221)	ENSORLG00000029673	ENSORLG00000022475	ENSORLG00000003273	ENSORLG00000003235	ENSORLG00000003192	ENSORLG00000024486	ssr1 (ENSORLG00000003179)	ENSORLG00000025916	ENSORLG00000003147	ENSORLG00000022207	cip2a (ENSORLG00000003114)	ezh2 (ENSORLG00000003066) #22	cul1a (ENSORLG00000003000) #23	ENSORLG00000024126	ENSORLG00000002951	cldn11b (ENSORLG00000002943)	ENSORLG00000002934	rpl22l1 (ENSORLG00000002916)	ENSORLG00000027121	TNIK (ENSORLG00000002885)	PLD1 (ENSORLG00000002792)	ENSORLG00000024083	ENSORLG00000002741	ENSORLG00000002722	eif2s3 (ENSORLG00000002716)	klhl15 (ENSORLG00000018526)	APOO (ENSORLG00000002692)
Chinese medaka	MODERN SPECIES	112								ENSOSIG00000022419	ENSOSIG00000022421	ENSOSIG00000022450	ssr1 (ENSOSIG00000022453)	ENSOSIG00000022457	ENSOSIG00000000056	ENSOSIG00000000067	cip2a (ENSOSIG00000000080)	ezh2 (ENSOSIG00000000170) #22	cul1a (ENSOSIG00000000441) #23	ENSOSIG00000000446	ENSOSIG00000000452	ENSOSIG00000000454	rpl22l1 (ENSOSIG00000000459)	ENSOSIG00000000478	ENSOSIG00000000501	ENSOSIG00000003455	ENSOSIG00000008914	ENSOSIG00000008915	ENSOSIG00000008917	eif2s3 (ENSOSIG00000008919)	ENSOSIG00000008920	klhl15 (ENSOSIG00000008922)
Cyprinodontiformes	ANCESTRAL SPECIES	36	ENSGT00390000007627	ENSGT00390000006452.a	ENSGT00940000159977	ENSGT00390000018596.A.b	ENSGT00390000000706	ENSGT01070000253760.b.a.a.a.a.b.b	ENSGT00950000182910.a.b.b	ENSGT00940000156056.B.c.b	ENSGT00940000155450.d	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000178878	ENSGT00940000176854	ENSGT00730000111912.A.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Cyprinodontoidei	ANCESTRAL SPECIES	48	ENSGT00940000163747	ENSGT00940000156770	ENSGT00390000007627	ENSGT00390000006452.a	ENSGT00940000159977	ENSGT00390000018596.A.b	ENSGT00390000000706	ENSGT01070000253760.b.a.a.a.a.b.b.e.a.a.b.a	ENSGT00950000182910.a.b.b	ENSGT00940000156056.B.c.b	ENSGT00940000155450.d	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000178878	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
NAME_4	ANCESTRAL SPECIES	181											ENSGT00940000155244.c.c.b.b	ENSGT00940000155244.c.c.b.a	ENSGT00730000111912.A.a.k	ENSGT00940000176854.f	ENSGT00730000111912.A.a.l	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.d	ENSGT00940000159116	ENSGT00530000063666.b.eb
Mummichog	MODERN SPECIES	1101															ENSFHEG00000000929	ezh2 (ENSFHEG00000000934) #22	cul1a (ENSFHEG00000000936) #23	ENSFHEG00000000937
Sheepshead minnow	MODERN SPECIES	840			rnf183 (ENSCVAG00000006965)	dhx16 (ENSCVAG00000007009)	ppt2a.2 (ENSCVAG00000007016)	ENSCVAG00000000195	ENSCVAG00000000617	fli1rs (ENSCVAG00000007086)	etsrp (ENSCVAG00000007125)	ENSCVAG00000007171	ENSCVAG00000007180	ENSCVAG00000007187	ENSCVAG00000007205	ENSCVAG00000007217	ENSCVAG00000007226	ezh2 (ENSCVAG00000007300) #22	cul1a (ENSCVAG00000007360) #23	ENSCVAG00000007366	ENSCVAG00000007409	cldn11b (ENSCVAG00000007411)	ENSCVAG00000007428
Poeciliinae	ANCESTRAL SPECIES	33	ENSGT00390000009127	ENSGT00940000157008	ENSGT00940000159947	ENSGT00940000156304.d	ENSGT00940000154992.a.b.c.b	ENSGT01070000253760.b.a.a.a.a.b.b.e.a.a.b.a.a.b	ENSGT00390000000706	ENSGT01070000253760.b.a.a.a.a.b.b.e.a.a.b.a.a.a.b	ENSGT00950000182910.a.b.b	ENSGT00940000156056.B.c.b	ENSGT00940000155450.d	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000178878	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801
Platyfish	MODERN SPECIES	13	ENSXMAG00000025873	ENSXMAG00000026928	ENSXMAG00000025363	ENSXMAG00000022995	ENSXMAG00000027514	ENSXMAG00000021650	ENSXMAG00000029622	ENSXMAG00000026534	ENSXMAG00000019073	ENSXMAG00000027919	ENSXMAG00000010270	ENSXMAG00000027673	ENSXMAG00000022239	ENSXMAG00000028314	ENSXMAG00000024311	ENSXMAG00000026261 #22	cul1a (ENSXMAG00000025859) #23	ENSXMAG00000028132	ENSXMAG00000027755	cldn11b (ENSXMAG00000021629)	ENSXMAG00000012058	ENSXMAG00000026098	rpl22l1 (ENSXMAG00000012049)	ENSXMAG00000023682	tnika (ENSXMAG00000021927)	PLD1 (ENSXMAG00000011913)	ENSXMAG00000027353	ENSXMAG00000025874	ENSXMAG00000011895	eif2s3 (ENSXMAG00000011878)	klhl15 (ENSXMAG00000023286)
Poecilia	ANCESTRAL SPECIES	70												ENSGT01100000263541.a.b.l.a.d	ENSGT01100000263483.A.g.a.d	ENSGT00730000111912.A.a.m	ENSGT00730000111912.A.a.n	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.a.a.b	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
NAME_6	ANCESTRAL SPECIES	193										ENSGT01100000263541.a.b.l.a.d	ENSGT01100000263483.A.g.a.d	ENSGT00730000111912.A.a.m.a	ENSGT00940000155244.c.c.b.b	ENSGT00940000155244.c.c.b.a.c	ENSGT00730000111912.A.a.m.b	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.a.a.b.b.a.a.b	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293
Amazon molly	MODERN SPECIES	956									zgc:113625 (ENSPFOG00000004640)	zgc:172131 (ENSPFOG00000004636)	ENSPFOG00000020717	ENSPFOG00000004629	ENSPFOG00000004585	ENSPFOG00000020716	ENSPFOG00000022856	ezh2 (ENSPFOG00000004156) #22	cul1a (ENSPFOG00000003888) #23	zgc:194621 (ENSPFOG00000003873)	ENSPFOG00000023886	cldn11b (ENSPFOG00000003817)	ENSPFOG00000003714
Sailfin molly	MODERN SPECIES	1234															ENSPLAG00000010537	ezh2 (ENSPLAG00000010563) #22	cul1a (ENSPLAG00000010593) #23	ENSPLAG00000010613	ENSPLAG00000010634	cldn11b (ENSPLAG00000010676)	ENSPLAG00000010697	ENSPLAG00000010708	rpl22l1 (ENSPLAG00000010722)	ENSPLAG00000010744	ENSPLAG00000010792	ENSPLAG00000010870
Guppy	MODERN SPECIES	451	cavin4b (ENSPREG00000010325)	tmeff1b (ENSPREG00000010345)	EGFR (ENSPREG00000010373)	ssr1 (ENSPREG00000010403)	ENSPREG00000010417	ENSPREG00000010450	ENSPREG00000010551	ENSPREG00000010625	ENSPREG00000010635	ENSPREG00000010652	ENSPREG00000010658	ENSPREG00000010669	zgc:113625 (ENSPREG00000010680)	ENSPREG00000010694	ENSPREG00000010702	ezh2 (ENSPREG00000010720) #22	cul1a (ENSPREG00000010778) #23	zgc:194621 (ENSPREG00000010830)	ENSPREG00000010863	cldn11b (ENSPREG00000010894)	ENSPREG00000010910	ENSPREG00000010921	rpl22l1 (ENSPREG00000010924)	ENSPREG00000010946	ENSPREG00000010957	ENSPREG00000010976	ENSPREG00000011035	ENSPREG00000011082	ENSPREG00000011102	ENSPREG00000011127	eif2s3 (ENSPREG00000011148)
Aplocheiloidei	ANCESTRAL SPECIES	125												ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00960000187826	ENSGT00940000162952.d.b.a	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Turquoise killifish	MODERN SPECIES	1617						ENSNFUG00015011908	CYB5A (ENSNFUG00015011901)	ENSNFUG00015011892	FAM69C (ENSNFUG00015011880)	tubb6 (ENSNFUG00015011873)	HUS1B (ENSNFUG00015011856)	EGFR (ENSNFUG00015009546)	ENSNFUG00015009401	ENSNFUG00015009365	ENSNFUG00015009348	EZH2 (ENSNFUG00015009161) #22	CUL1B (ENSNFUG00015009059) #23	ENSNFUG00015023370	ENSNFUG00015023366	cldn11b (ENSNFUG00015023365)	ENSNFUG00015023363	rpl22l1 (ENSNFUG00015023357)	ENSNFUG00015023353	ENSNFUG00015023094	PLD1 (ENSNFUG00015022401)	ENSNFUG00015022386	ENSNFUG00015022383	ENSNFUG00015022379	EIF2S3 (ENSNFUG00015022366)	KLHL15 (ENSNFUG00015022361)	APOO (ENSNFUG00015022353)
Mangrove rivulus	MODERN SPECIES	458														ENSKMAG00000017856	ENSKMAG00000017847	ezh2 (ENSKMAG00000017786) #22	cul1a (ENSKMAG00000017726) #23	ENSKMAG00000017692	cldn11b (ENSKMAG00000017676)	ENSKMAG00000017574	rpl22l1 (ENSKMAG00000017514)	ENSKMAG00000017495	TNIK (ENSKMAG00000017444)	PLD1 (ENSKMAG00000017403)	ENSKMAG00000017390	ENSKMAG00000017359	ENSKMAG00000017336	eif2s3 (ENSKMAG00000017296)	klhl15 (ENSKMAG00000017222)	sat1b (ENSKMAG00000017187)	APOO (ENSKMAG00000017171)
Ovalentaria_B	ANCESTRAL SPECIES	20										ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000178878	ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Pomacentridae	ANCESTRAL SPECIES	80	ENSGT00940000157289.a	ENSGT00940000168147	ENSGT00940000163747	ENSGT00940000156770	ENSGT00390000007627	ENSGT00940000171800	ENSGT00390000006452.a	ENSGT00940000170651	ENSGT00390000018596.A.b	ENSGT00390000000706	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Pomacentridae_A	ANCESTRAL SPECIES	114											ENSGT00400000022103.a	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000162952.d.b.a	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Amphiprion	ANCESTRAL SPECIES	145											ENSGT00400000022103.a	ENSGT00940000154775.c.b	ENSGT00940000154533.a.a.b	ENSGT00940000156390	ENSGT00940000176854	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000167146	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116
Orange clownfish	MODERN SPECIES	14	ENSAPEG00000003330	ENSAPEG00000003348	ENSAPEG00000003363	ENSAPEG00000003428	ENSAPEG00000003445	ENSAPEG00000003460	ENSAPEG00000003482	ENSAPEG00000003507	ENSAPEG00000003535	ssr1 (ENSAPEG00000003557)	ENSAPEG00000003652	ENSAPEG00000003665	ENSAPEG00000003709	ENSAPEG00000003812	ENSAPEG00000003828	ezh2 (ENSAPEG00000003874) #22	cul1a (ENSAPEG00000003986) #23	ENSAPEG00000004053	ENSAPEG00000004071	cldn11b (ENSAPEG00000004102)	ENSAPEG00000004137	rpl22l1 (ENSAPEG00000004158)	ENSAPEG00000004194	TNIK (ENSAPEG00000004265)	PLD1 (ENSAPEG00000004358)	ENSAPEG00000004692	ENSAPEG00000004761	ENSAPEG00000004810	eif2s3 (ENSAPEG00000004840)	klhl15 (ENSAPEG00000004899)	apoob (ENSAPEG00000004940)
Clown anemonefish	MODERN SPECIES	1084											ENSAOCG00000008877	ENSAOCG00000008846	ENSAOCG00000008815	ENSAOCG00000008762	ENSAOCG00000008752	ezh2 (ENSAOCG00000008731) #22
Spiny chromis	MODERN SPECIES	588											ssr1 (ENSAPOG00000002069)	ENSAPOG00000002044	ENSAPOG00000002001	ENSAPOG00000001994	ENSAPOG00000001985	ezh2 (ENSAPOG00000001967) #22	cul1a (ENSAPOG00000001883) #23	ENSAPOG00000001807	ENSAPOG00000001795	cldn11b (ENSAPOG00000001786)	ENSAPOG00000001763	rpl22l1 (ENSAPOG00000001669)	ENSAPOG00000001659	ENSAPOG00000001652	TNIK (ENSAPOG00000001635)	PLD1 (ENSAPOG00000001599)	ENSAPOG00000000019	ENSAPOG00000001574	ENSAPOG00000001568	eif2s3 (ENSAPOG00000001555)	klhl15 (ENSAPOG00000001546)
Bicolor damselfish	MODERN SPECIES	1548												ENSSPAG00000017024	ENSSPAG00000017018	ENSSPAG00000017002	ENSSPAG00000016992	ezh2 (ENSSPAG00000016921) #22	cul1a (ENSSPAG00000016849) #23	ENSSPAG00000016835	ENSSPAG00000016822
Cichlidae	ANCESTRAL SPECIES	69												ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00940000178878	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00950000183269	ENSGT00940000154992.a.b.c.a	ENSGT00940000163423.C.h	ENSGT00940000156304.c.a	ENSGT00940000159947	ENSGT00940000157008
Midas cichlid	MODERN SPECIES	1347																ezh2 (ENSACIG00000002702) #22	cul1a (ENSACIG00000002661) #23	ENSACIG00000002650	ENSACIG00000002639	CLDN11 (ENSACIG00000002601)
Pseudocrenilabrinae	ANCESTRAL SPECIES	34												ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00730000111912.A.a.o.b.a.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00950000183269	ENSGT00940000154992.a.b.c.a	ENSGT00940000156304.d	ENSGT00940000159947	ENSGT00940000157008	ENSGT00390000009127
Nile tilapia	MODERN SPECIES	21	ENSONIG00000039196	PTPRM (ENSONIG00000000129)	ENSONIG00000009887	ENSONIG00000009892	ENSONIG00000039555	ENSONIG00000030422	ENSONIG00000027272	ENSONIG00000039578	gcm2 (ENSONIG00000009885)	ENSONIG00000042382	ENSONIG00000035597	ENSONIG00000009877	zbtb14 (ENSONIG00000009875)	ENSONIG00000020592	ENSONIG00000038501	ezh2 (ENSONIG00000017651) #22	cul1a (ENSONIG00000017656) #23	ENSONIG00000034774	cldn11b (ENSONIG00000039302)	ENSONIG00000017660	rpl22l1 (ENSONIG00000017661)	ENSONIG00000018953	ENSONIG00000017666	ENSONIG00000031801	ENSONIG00000029472	ENSONIG00000029365	ENSONIG00000039025	ENSONIG00000031497	nrn1 (ENSONIG00000032195)	ENSONIG00000013398	RREB1 (ENSONIG00000013406)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	74												ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00730000111912.A.a.o.b.a.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f
Lyretail cichlid	MODERN SPECIES	480	ssr1 (ENSNBRG00000009186)	ENSNBRG00000009210	ENSNBRG00000009258	ENSNBRG00000009275	ENSNBRG00000009288	zgc:113625 (ENSNBRG00000009301)	ENSNBRG00000009311	zgc:113625 (ENSNBRG00000009327)	zgc:113625 (ENSNBRG00000009335)	zgc:113625 (ENSNBRG00000009351)	ENSNBRG00000009365	zgc:113625 (ENSNBRG00000009377)	ENSNBRG00000009397	ENSNBRG00000009410	zgc:113625 (ENSNBRG00000009435)	ezh2 (ENSNBRG00000009443) #22	cul1a (ENSNBRG00000009472) #23	ENSNBRG00000009490	ENSNBRG00000009506	cldn11b (ENSNBRG00000009533)	ENSNBRG00000009637	rpl22l1 (ENSNBRG00000009673)	ENSNBRG00000009695	ENSNBRG00000009707	ENSNBRG00000009728	ENSNBRG00000009798	ENSNBRG00000009815
Haplochromini	ANCESTRAL SPECIES	86										ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b	ENSGT00730000111912.A.a.o.b.a.a	ENSGT01100000263541.a.b.l.b.a.b	ENSGT00940000159509.a.b.b.a.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f
Burton s mouthbrooder	MODERN SPECIES	895													ENSHBUG00000019258	ENSHBUG00000019249	ENSHBUG00000019235	ezh2 (ENSHBUG00000000570) #22	cul1a (ENSHBUG00000019122) #23	ENSHBUG00000019079	ENSHBUG00000019057	cldn11b (ENSHBUG00000019002)	ENSHBUG00000018996	rpl22l1 (ENSHBUG00000018968)	ENSHBUG00000018936	ENSHBUG00000018927	ENSHBUG00000018830
Haplochromini_A	ANCESTRAL SPECIES	98														ENSGT01100000263541.a.b.l.b.a.b	ENSGT00940000159509.a.b.b.a.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183196.B.f
P. nyererei	MODERN SPECIES	734														ENSPNYG00000013475	ENSPNYG00000013460	ezh2 (ENSPNYG00000013419) #22	cul1a (ENSPNYG00000013388) #23	ENSPNYG00000013369	ENSPNYG00000013349	cldn11b (ENSPNYG00000013276)	ENSPNYG00000013251	rpl22l1 (ENSPNYG00000013228)	ENSPNYG00000013212	ENSPNYG00000013168	ENSPNYG00000013077
Haplochromini_B	ANCESTRAL SPECIES	63														ENSGT01100000263541.a.b.l.b.a.b	ENSGT00940000159509.a.b.b.a.a	ENSGT00940000155013 #22	ENSGT00940000154774 #23	ENSGT00940000177048	ENSGT00940000154964.z	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00940000163015	ENSGT00950000183169.A.b.e.a.a.a.a.a.a.a.a.a.a.a	ENSGT00940000164918.c.b.a.a.a.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.a.d	ENSGT00950000183269	ENSGT00940000154992.a.b.c.a	ENSGT00940000156304.d	ENSGT00940000159947
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	29														ENSMZEG00005013350	ENSMZEG00005013343	ezh2 (ENSMZEG00005013319) #22	cul1a (ENSMZEG00005013277) #23	ENSMZEG00005013265	ENSMZEG00005013234	cldn11b (ENSMZEG00005013219)	ENSMZEG00005013212	rpl22l1 (ENSMZEG00005013204)	ENSMZEG00005013197	ENSMZEG00005012769	ENSMZEG00005012737	ENSMZEG00005012727	ENSMZEG00005012715	ENSMZEG00005012709	ENSMZEG00005012692	ENSMZEG00005012686	ENSMZEG00005012676
Zebra mbuna	MODERN SPECIES	235					ENSMZEG00005012829	ENSMZEG00005012843	ENSMZEG00005012856	ENSMZEG00005012863	ENSMZEG00005012877	ENSMZEG00005012880	ENSMZEG00005012891	ENSMZEG00005012900	ENSMZEG00005012908	ENSMZEG00005012948	ENSMZEG00005013689	ezh2 (ENSMZEG00005013706) #22
Eastern happy	MODERN SPECIES	21	ENSACLG00000023555	ENSACLG00000023539	ENSACLG00000023525	ENSACLG00000023509	ENSACLG00000023502	ENSACLG00000023386	ENSACLG00000023361	ENSACLG00000023347	ENSACLG00000023337	ENSACLG00000023322	ENSACLG00000023311	ENSACLG00000023253	ENSACLG00000023244	ENSACLG00000023171	ENSACLG00000023161	ezh2 (ENSACLG00000023070) #22	cul1a (ENSACLG00000022999) #23	ENSACLG00000022980	ENSACLG00000022925	ENSACLG00000022910	cldn11b (ENSACLG00000022903)	ENSACLG00000022778	rpl22l1 (ENSACLG00000022746)	ENSACLG00000022718	ENSACLG00000022614	ENSACLG00000022548	ENSACLG00000022499	ENSACLG00000022497	ENSACLG00000022491	ENSACLG00000022482	ENSACLG00000022475
Elephant shark	MODERN SPECIES	1643											tmem18 (ENSCMIG00000007533)	adcy1b (ENSCMIG00000007519)	ENSCMIG00000007458	RAMP3 (ENSCMIG00000007439)	pdia4 (ENSCMIG00000007437) #21	ezh2 (ENSCMIG00000007349) #22	cul1b (ENSCMIG00000007276) #23	CNTNAP2 (ENSCMIG00000007244) #24	ENSCMIG00000007241	ENSCMIG00000007239