Bilateria	ANCESTRAL SPECIES																	ENSGT00390000001627 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000001627 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000001627 #22
Gnathostomata	ANCESTRAL SPECIES	63	ENSGT00950000183134.c.a.b	ENSGT00390000000155.b	ENSGT00950000183068.b	ENSGT00940000160200 #10	ENSGT00940000164536	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT01100000266166	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000164385.a.b	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D #31
Euteleostomi	ANCESTRAL SPECIES	38	ENSGT00940000168604	ENSGT00950000183068.b	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000164536	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000161569	ENSGT01100000263543	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34
Sarcopterygii	ANCESTRAL SPECIES	62			ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000164536	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT01100000263530	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000164536	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Aves	ANCESTRAL SPECIES	10	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT01060000248664	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Golden eagle	MODERN SPECIES	11	HACE1 (ENSACCG00020007438)	GRIK2 (ENSACCG00020007485)	ASCC3 (ENSACCG00020007539) #7	SIM1 (ENSACCG00020007595) #8	PRDM13 (ENSACCG00020007603) #10	CCNC (ENSACCG00020007612) #11	ENSACCG00020007628 #12	USP45 (ENSACCG00020007646) #13	ENSACCG00020007669	COQ3 (ENSACCG00020007685) #15	FAXC (ENSACCG00020007694) #16	FBXL4 (ENSACCG00020007705) #17	POU3F2 (ENSACCG00020007717) #18	MMS22L (ENSACCG00020007801) #19	KLHL32 (ENSACCG00020007874) #20	NDUFAF4 (ENSACCG00020007902) #22	GPR63 (ENSACCG00020007915) #23	FHL5 (ENSACCG00020007940) #24	UFL1 (ENSACCG00020007959) #25	FUT9 (ENSACCG00020007973) #26	MANEA (ENSACCG00020007982) #27	ENSACCG00020007990	EPHA7 (ENSACCG00020008018) #28	MAP3K7 (ENSACCG00020000300) #29	BACH2 (ENSACCG00020000345) #30	GJA10 (ENSACCG00020000365) #31	CASP8AP2 (ENSACCG00020000438) #33	MDN1 (ENSACCG00020001607) #34	LYRM2 (ENSACCG00020002598) #35	ANKRD6 (ENSACCG00020002608) #36	RRAGD (ENSACCG00020002626) #37
Kakapo	MODERN SPECIES	23	ASCC3 (ENSSHBG00005007565) #7	SIM1 (ENSSHBG00005008456) #8	PRDM13 (ENSSHBG00005008480) #10	CCNC (ENSSHBG00005008489) #11	ENSSHBG00005008496 #12	USP45 (ENSSHBG00005008502) #13	PNISR (ENSSHBG00005008511) #14	COQ3 (ENSSHBG00005008518) #15	ENSSHBG00005008530	FAXC (ENSSHBG00005008534) #16	FBXL4 (ENSSHBG00005008538) #17	POU3F2 (ENSSHBG00005008541) #18	MMS22L (ENSSHBG00005008564) #19	ENSSHBG00005008571 #20	ENSSHBG00005008581 #20	NDUFAF4 (ENSSHBG00005008586) #22	GPR63 (ENSSHBG00005008589) #23	FHL5 (ENSSHBG00005008592) #24	UFL1 (ENSSHBG00005008601) #25	FUT9 (ENSSHBG00005008631) #26	MANEA (ENSSHBG00005008638) #27	EPHA7 (ENSSHBG00005008653) #28	MAP3K7 (ENSSHBG00005008684) #29	BACH2 (ENSSHBG00005008691) #30	GJA10 (ENSSHBG00005008703) #31	CASP8AP2 (ENSSHBG00005008714) #33	MDN1 (ENSSHBG00005009505) #34	ENSSHBG00005016401	ANKRD6 (ENSSHBG00005016411) #36	RRAGD (ENSSHBG00005016416) #37	UBE2J1 (ENSSHBG00005000504)
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT01060000248664	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Great tit	MODERN SPECIES	22	HACE1 (ENSPMJG00000000330)	GRIK2 (ENSPMJG00000000444)	ASCC3 (ENSPMJG00000000583) #7	SIM1 (ENSPMJG00000000702) #8	PRDM13 (ENSPMJG00000000769) #10	CCNC (ENSPMJG00000000772) #11	ENSPMJG00000000782 #12	USP45 (ENSPMJG00000000786) #13	ENSPMJG00000000801	COQ3 (ENSPMJG00000000809) #15	FAXC (ENSPMJG00000000817) #16	FBXL4 (ENSPMJG00000000892) #17	ENSPMJG00000000900	MMS22L (ENSPMJG00000001015) #19	KLHL32 (ENSPMJG00000001160) #20	NDUFAF4 (ENSPMJG00000001185) #22	GPR63 (ENSPMJG00000001193) #23	FHL5 (ENSPMJG00000001195) #24	UFL1 (ENSPMJG00000001196) #25	FUT9 (ENSPMJG00000001233) #26	MANEA (ENSPMJG00000001269) #27	EPHA7 (ENSPMJG00000001305) #28	MAP3K7 (ENSPMJG00000001473) #29	BACH2 (ENSPMJG00000001556) #30	GJA10 (ENSPMJG00000001569) #31	CASP8AP2 (ENSPMJG00000001574) #33	MDN1 (ENSPMJG00000001617) #34	LYRM2 (ENSPMJG00000002106) #35	ANKRD6 (ENSPMJG00000002121) #36	RRAGD (ENSPMJG00000002181) #37	UBE2J1 (ENSPMJG00000002194)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT01060000248664	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.g #36	ENSGT00950000183031.A.a.b #37
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT01060000248664	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.g #36	ENSGT00950000183031.A.a.b #37
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT01060000248664	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00970000193844	ENSGT00940000155887.g #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Zebra finch	MODERN SPECIES	23	HACE1 (ENSTGUG00000012227)	GRIK2 (ENSTGUG00000012240)	ASCC3 (ENSTGUG00000012262) #7	SIM1 (ENSTGUG00000012278) #8	PRDM13 (ENSTGUG00000012280) #10	CCNC (ENSTGUG00000012282) #11	ENSTGUG00000012283 #12	USP45 (ENSTGUG00000012285) #13	ENSTGUG00000012289	COQ3 (ENSTGUG00000012290) #15	FAXC (ENSTGUG00000012293) #16	FBXL4 (ENSTGUG00000012295) #17	POU3F2 (ENSTGUG00000027623) #18	MMS22L (ENSTGUG00000012296) #19	KLHL32 (ENSTGUG00000012306) #20	NDUFAF4 (ENSTGUG00000024097) #22	GPR63 (ENSTGUG00000026583) #23	FHL5 (ENSTGUG00000012315) #24	UFL1 (ENSTGUG00000012318) #25	FUT9 (ENSTGUG00000019610) #26	MANEA (ENSTGUG00000020334) #27	EPHA7 (ENSTGUG00000012333) #28	MAP3K7 (ENSTGUG00000012360) #29	BACH2 (ENSTGUG00000012380) #30	GJA10 (ENSTGUG00000012383) #31	CASP8AP2 (ENSTGUG00000012385) #33	MDN1 (ENSTGUG00000012389) #34	ANKRD6 (ENSTGUG00000012407) #36	RRAGD (ENSTGUG00000012410) #37	UBE2J1 (ENSTGUG00000012412)	GABRR2 (ENSTGUG00000012416)
Common canary	MODERN SPECIES	1	LIN28B (ENSSCAG00000000914)	HACE1 (ENSSCAG00000000966)	GRIK2 (ENSSCAG00000001013)	ASCC3 (ENSSCAG00000001112) #7	SIM1 (ENSSCAG00000001136) #8	CCNC (ENSSCAG00000001173) #11	ENSSCAG00000001191 #12	USP45 (ENSSCAG00000001208) #13	ENSSCAG00000001235	COQ3 (ENSSCAG00000001250) #15	FAXC (ENSSCAG00000001258) #16	FBXL4 (ENSSCAG00000001276) #17	MMS22L (ENSSCAG00000001309) #19	ENSSCAG00000001341 #20	ENSSCAG00000001354 #21	NDUFAF4 (ENSSCAG00000001361) #22	GPR63 (ENSSCAG00000001379) #23	FHL5 (ENSSCAG00000001389) #24	UFL1 (ENSSCAG00000001485) #25	FUT9 (ENSSCAG00000001754) #26	MANEA (ENSSCAG00000001761) #27	EPHA7 (ENSSCAG00000001775) #28	MAP3K7 (ENSSCAG00000001787) #29	BACH2 (ENSSCAG00000001813) #30	GJA10 (ENSSCAG00000001818) #31	CASP8AP2 (ENSSCAG00000001824) #33	MDN1 (ENSSCAG00000002014) #34	ENSSCAG00000002798	ANKRD6 (ENSSCAG00000002817) #36	RRAGD (ENSSCAG00000002891) #37	UBE2J1 (ENSSCAG00000002895)
Medium ground finch	MODERN SPECIES	8				ENSGFOG00000003763	CCNC (ENSGFOG00000003752) #11	ENSGFOG00000003745 #12	USP45 (ENSGFOG00000003716) #13	ENSGFOG00000003701	COQ3 (ENSGFOG00000003658) #15	FAXC (ENSGFOG00000003650) #16	FBXL4 (ENSGFOG00000003638) #17	ENSGFOG00000003620	MMS22L (ENSGFOG00000003587) #19	ENSGFOG00000003567 #20	ENSGFOG00000003554 #20	NDUFAF4 (ENSGFOG00000003530) #22	GPR63 (ENSGFOG00000003526) #23	FHL5 (ENSGFOG00000003518) #24	UFL1 (ENSGFOG00000003501) #25	FUT9 (ENSGFOG00000003492) #26	MANEA (ENSGFOG00000003481) #27	TOX (ENSGFOG00000003430)	NSMAF (ENSGFOG00000003372)	SDCBP (ENSGFOG00000003353)	CYP7A1 (ENSGFOG00000003339)	ENSGFOG00000003317	ENSGFOG00000003260	FAM110B (ENSGFOG00000003229)	BPNT2 (ENSGFOG00000003209)	PENK (ENSGFOG00000003201)	SDR16C5 (ENSGFOG00000003191)
Flycatcher	MODERN SPECIES	21	GRIK2 (ENSFALG00000005281)	ASCC3 (ENSFALG00000005260) #7	SIM1 (ENSFALG00000009592) #8	PRDM13 (ENSFALG00000025976) #10	CCNC (ENSFALG00000026662) #11	ENSFALG00000022920 #12	USP45 (ENSFALG00000009614) #13	ENSFALG00000026665	COQ3 (ENSFALG00000024544) #15	ENSFALG00000022998	FAXC (ENSFALG00000009629) #16	FBXL4 (ENSFALG00000009636) #17	POU3F2 (ENSFALG00000026361) #18	MMS22L (ENSFALG00000009642) #19	KLHL32 (ENSFALG00000009649) #20	NDUFAF4 (ENSFALG00000027031) #22	GPR63 (ENSFALG00000014703) #23	FHL5 (ENSFALG00000026017) #24	UFL1 (ENSFALG00000009660) #25	FUT9 (ENSFALG00000009665) #26	MANEA (ENSFALG00000027505) #27	EPHA7 (ENSFALG00000003212) #28	MAP3K7 (ENSFALG00000003169) #29	BACH2 (ENSFALG00000003160) #30	GJA10 (ENSFALG00000003151) #31	CASP8AP2 (ENSFALG00000003130) #33	MDN1 (ENSFALG00000003068) #34	LYRM2 (ENSFALG00000026619) #35	ENSFALG00000025417 #36	ENSFALG00000003022 #36	RRAGD (ENSFALG00000003012) #37
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Anatidae	ANCESTRAL SPECIES		ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Pink-footed goose	MODERN SPECIES	17	ASCC3 (ENSABRG00000019418) #7	SIM1 (ENSABRG00000019423) #8	MCHR2 (ENSABRG00000000117) #9	PRDM13 (ENSABRG00000000128) #10	CCNC (ENSABRG00000000132) #11	ENSABRG00000000656 #12	USP45 (ENSABRG00000000719) #13	PNISR (ENSABRG00000002392) #14	COQ3 (ENSABRG00000002674) #15	ENSABRG00000002692 #16	ENSABRG00000002719 #16	FBXL4 (ENSABRG00000002735) #17	POU3F2 (ENSABRG00000002751) #18	MMS22L (ENSABRG00000002851) #19	KLHL32 (ENSABRG00000002946) #20	NDUFAF4 (ENSABRG00000003010) #22	GPR63 (ENSABRG00000003031) #23	FHL5 (ENSABRG00000003040) #24	UFL1 (ENSABRG00000003072) #25	FUT9 (ENSABRG00000003111) #26	MANEA (ENSABRG00000003144) #27	ENSABRG00000003159	ENSABRG00000003181 #28	ENSABRG00000003215 #28	ENSABRG00000003224 #28	MAP3K7 (ENSABRG00000003303) #29	BACH2 (ENSABRG00000003351) #30	GJA10 (ENSABRG00000003364) #31	CASP8AP2 (ENSABRG00000003379) #33	MDN1 (ENSABRG00000003773) #34	LYRM2 (ENSABRG00000007074) #35
Duck	MODERN SPECIES	21	KCNS3 (ENSAPLG00000001833)	ENSAPLG00000008127	MSGN1 (ENSAPLG00000001852)	GEN1 (ENSAPLG00000008596)	SMC6 (ENSAPLG00000008910)	VSNL1 (ENSAPLG00000010558)	ENSAPLG00000025611	CYRIA (ENSAPLG00000009498)	MYCN (ENSAPLG00000009825)	DDX1 (ENSAPLG00000011093)	NBAS (ENSAPLG00000012361)	LRATD1 (ENSAPLG00000011566)	TRIB2 (ENSAPLG00000013170)	MMS22L (ENSAPLG00000006108) #19	KLHL32 (ENSAPLG00000005979) #20	NDUFAF4 (ENSAPLG00000005892) #22	GPR63 (ENSAPLG00000001077) #23	FHL5 (ENSAPLG00000005672) #24	UFL1 (ENSAPLG00000005301) #25	FUT9 (ENSAPLG00000001045) #26	MANEA (ENSAPLG00000005108) #27	EPHA7 (ENSAPLG00000002816) #28	MAP3K7 (ENSAPLG00000002702) #29	BACH2 (ENSAPLG00000002486) #30	GJA10 (ENSAPLG00000002205) #31	CASP8AP2 (ENSAPLG00000002243) #33	MDN1 (ENSAPLG00000000987) #34	LYRM2 (ENSAPLG00000025978) #35	ENSAPLG00000029489 #36	ENSAPLG00000016201 #36	RRAGD (ENSAPLG00000016037) #37
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT01040000244587	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Japanese quail	MODERN SPECIES	21	GRIK2 (ENSCJPG00005009466)	ASCC3 (ENSCJPG00005009467) #7	SIM1 (ENSCJPG00005009469) #8	PRDM13 (ENSCJPG00005009475) #10	CCNC (ENSCJPG00005009478) #11	ENSCJPG00005009480 #12	USP45 (ENSCJPG00005000057) #13	PNISR (ENSCJPG00005000077) #14	COQ3 (ENSCJPG00005000085) #15	FAXC (ENSCJPG00005000089) #16	FBXL4 (ENSCJPG00005000132) #17	POU3F2 (ENSCJPG00005000151) #18	ENSCJPG00005000175	MMS22L (ENSCJPG00005000231) #19	KLHL32 (ENSCJPG00005000260) #20	NDUFAF4 (ENSCJPG00005000283) #22	GPR63 (ENSCJPG00005000287) #23	FHL5 (ENSCJPG00005000296) #24	UFL1 (ENSCJPG00005000355) #25	FUT9 (ENSCJPG00005002246) #26	MANEA (ENSCJPG00005002249) #27	EPHA7 (ENSCJPG00005002255) #28	MAP3K7 (ENSCJPG00005002267) #29	ENSCJPG00005002271	BACH2 (ENSCJPG00005002273) #30	GJA10 (ENSCJPG00005002275) #31	CASP8AP2 (ENSCJPG00005002276) #33	MDN1 (ENSCJPG00005002315) #34	LYRM2 (ENSCJPG00005003944) #35	ANKRD6 (ENSCJPG00005003945) #36	RRAGD (ENSCJPG00005004039) #37
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT01040000244587	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00940000165360	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Chicken	MODERN SPECIES	22	GRIK2 (ENSGALG00010013006)	ASCC3 (ENSGALG00010015140) #7	SIM1 (ENSGALG00010015160) #8	PRDM13 (ENSGALG00010004136) #10	CCNC (ENSGALG00010004238) #11	ENSGALG00010004240 #12	USP45 (ENSGALG00010004249) #13	PNISR (ENSGALG00010004306) #14	COQ3 (ENSGALG00010004329) #15	FAXC (ENSGALG00010004345) #16	FBXL4 (ENSGALG00010004362) #17	POU3F2 (ENSGALG00010004399) #18	MMS22L (ENSGALG00010004373) #19	ENSGALG00010004383 #20	ENSGALG00010004978 #21	NDUFAF4 (ENSGALG00010004123) #22	GPR63 (ENSGALG00010002586) #23	FHL5 (ENSGALG00010002625) #24	UFL1 (ENSGALG00010002649) #25	FUT9 (ENSGALG00010002747) #26	MANEA (ENSGALG00010004125) #27	ENSGALG00010002877	EPHA7 (ENSGALG00010004127) #28	MAP3K7 (ENSGALG00010003218) #29	ENSGALG00010003224	BACH2 (ENSGALG00010003274) #30	GJA10 (ENSGALG00010004392) #31	CASP8AP2 (ENSGALG00010003300) #33	MDN1 (ENSGALG00010003308) #34	LYRM2 (ENSGALG00010003317)	ANKRD6 (ENSGALG00010003364) #36
Turkey	MODERN SPECIES	11	ENSMGAG00000013519	ENSMGAG00000018204	ENSMGAG00000022679	QRSL1 (ENSMGAG00000013518)	ENSMGAG00000013515	ENSMGAG00000013517	PDSS2 (ENSMGAG00000013514)	ENSMGAG00000013512	ENSMGAG00000021606	ENSMGAG00000020588	PREP (ENSMGAG00000013527)	BVES (ENSMGAG00000013529)	LIN28B (ENSMGAG00000013531)	HACE1 (ENSMGAG00000013533)	ENSMGAG00000015902 #23	ENSMGAG00000018221 #22	ENSMGAG00000019904 #21	ENSMGAG00000022447 #21	ENSMGAG00000013594 #20	ENSMGAG00000021109	ENSMGAG00000019925	ENSMGAG00000022529 #17	ENSMGAG00000013562 #16	ENSMGAG00000013560 #15	ENSMGAG00000013558 #14	ENSMGAG00000013556 #13	ENSMGAG00000017048 #13	ENSMGAG00000016616 #11	ENSMGAG00000013555 #12	ENSMGAG00000016967	ENSMGAG00000013553 #8
African ostrich	MODERN SPECIES	862										KCNF1 (ENSSCUG00000014419)	C2orf50 (ENSSCUG00000014421)	SLC66A3 (ENSSCUG00000014423)	ENSSCUG00000014429	MMS22L (ENSSCUG00000014435) #19	KLHL32 (ENSSCUG00000014442) #20	NDUFAF4 (ENSSCUG00000014453) #22	GPR63 (ENSSCUG00000014459) #23	FHL5 (ENSSCUG00000014463) #24	UFL1 (ENSSCUG00000014479) #25	FUT9 (ENSSCUG00000014511) #26	MANEA (ENSSCUG00000014512) #27
Australian saltwater crocodile	MODERN SPECIES	38	ASCC3 (ENSCPRG00005000542) #7	SIM1 (ENSCPRG00005000466) #8	MCHR2 (ENSCPRG00005000415) #9	CCNC (ENSCPRG00005000316) #11	ENSCPRG00005000301 #12	USP45 (ENSCPRG00005000289) #13	PNISR (ENSCPRG00005000239) #14	COQ3 (ENSCPRG00005000207) #15	ENSCPRG00005000201 #16	ENSCPRG00005000191 #16	FBXL4 (ENSCPRG00005017365) #17	POU3F2 (ENSCPRG00005017364) #18	MMS22L (ENSCPRG00005017353) #19	ENSCPRG00005017350 #20	ENSCPRG00005017348 #21	NDUFAF4 (ENSCPRG00005017345) #22	GPR63 (ENSCPRG00005017342) #23	FHL5 (ENSCPRG00005017338) #24	UFL1 (ENSCPRG00005017328) #25	FUT9 (ENSCPRG00005017327) #26	MANEA (ENSCPRG00005017320) #27	EPHA7 (ENSCPRG00005017313) #28	MAP3K7 (ENSCPRG00005017287) #29	BACH2 (ENSCPRG00005017267) #30	GJA10 (ENSCPRG00005017265) #31	CASP8AP2 (ENSCPRG00005017263) #33	MDN1 (ENSCPRG00005017073) #34	LYRM2 (ENSCPRG00005017000) #35	ANKRD6 (ENSCPRG00005016955) #36	RRAGD (ENSCPRG00005016931) #37	UBE2J1 (ENSCPRG00005016927)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719.l #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719.l #13	ENSGT00940000157719.k #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Goode s thornscrub tortoise	MODERN SPECIES	17	SIM1 (ENSGEVG00005003172) #8	MCHR2 (ENSGEVG00005003158) #9	PRDM13 (ENSGEVG00005003148) #10	CCNC (ENSGEVG00005003129) #11	ENSGEVG00005003119 #12	USP45 (ENSGEVG00005003090) #13	PNISR (ENSGEVG00005003075) #14	COQ3 (ENSGEVG00005003062) #15	FAXC (ENSGEVG00005003024) #16	FBXL4 (ENSGEVG00005003000) #17	POU3F2 (ENSGEVG00005002991) #18	ENSGEVG00005002975	MMS22L (ENSGEVG00005002915) #19	ENSGEVG00005002891 #20	ENSGEVG00005002872 #21	NDUFAF4 (ENSGEVG00005002864) #22	GPR63 (ENSGEVG00005002856) #23	FHL5 (ENSGEVG00005002827) #24	UFL1 (ENSGEVG00005002787) #25	FUT9 (ENSGEVG00005002773) #26	MANEA (ENSGEVG00005002760) #27	EPHA7 (ENSGEVG00005002728) #28	ENSGEVG00005002706	MAP3K7 (ENSGEVG00005002604) #29	ENSGEVG00005002548	ENSGEVG00005002541	BACH2 (ENSGEVG00005002533) #30	GJA10 (ENSGEVG00005002522) #31	CASP8AP2 (ENSGEVG00005002506) #33	LYRM2 (ENSGEVG00005002329) #35	ENSGEVG00005002313 #36
Abingdon island giant tortoise	MODERN SPECIES	342													MMS22L (ENSCABG00000005735) #19	ENSCABG00000005731 ##21	ENSCABG00000005728 #21	NDUFAF4 (ENSCABG00000005724) #22	GPR63 (ENSCABG00000005722) #23	FHL5 (ENSCABG00000005716) #24	UFL1 (ENSCABG00000005541) #25	FUT9 (ENSCABG00000005537) #26
Emydidae	ANCESTRAL SPECIES	8	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719.l #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Three-toed box turtle	MODERN SPECIES	15	GRIK2 (ENSTMTG00000001374)	ASCC3 (ENSTMTG00000001886) #7	SIM1 (ENSTMTG00000002156) #8	MCHR2 (ENSTMTG00000002173) #9	PRDM13 (ENSTMTG00000002183) #10	CCNC (ENSTMTG00000002189) #11	ENSTMTG00000002198 #12	USP45 (ENSTMTG00000002207) #13	PNISR (ENSTMTG00000002242) #14	COQ3 (ENSTMTG00000002247) #15	FAXC (ENSTMTG00000002256) #16	FBXL4 (ENSTMTG00000002265) #17	POU3F2 (ENSTMTG00000002271) #18	MMS22L (ENSTMTG00000002281) #19	KLHL32 (ENSTMTG00000002330) #21	NDUFAF4 (ENSTMTG00000002345) #22	GPR63 (ENSTMTG00000002354) #23	FHL5 (ENSTMTG00000002355) #24	UFL1 (ENSTMTG00000002364) #25	FUT9 (ENSTMTG00000002375) #26	MANEA (ENSTMTG00000002379) #27	EPHA7 (ENSTMTG00000002387) #28	ENSTMTG00000002427	MAP3K7 (ENSTMTG00000002445) #29	ENSTMTG00000002527	BACH2 (ENSTMTG00000002531) #30	GJA10 (ENSTMTG00000002539) #31	CASP8AP2 (ENSTMTG00000002546) #33	MDN1 (ENSTMTG00000002714) #34	LYRM2 (ENSTMTG00000005085) #35	ANKRD6 (ENSTMTG00000005103) #36
painted turtle	MODERN SPECIES	2422	SIM1 (ENSCPBG00000003844) #8	MCHR2 (ENSCPBG00000003828) #9	PRDM13 (ENSCPBG00000003808) #10	CCNC (ENSCPBG00000003793) #11	ENSCPBG00000003781 #12	PASK (ENSCPBG00000003758)	ENSCPBG00000003733	USP45 (ENSCPBG00000003656) #13	PNISR (ENSCPBG00000003613) #14	COQ3 (ENSCPBG00000003600) #15	FAXC (ENSCPBG00000003584) #16	FBXL4 (ENSCPBG00000003550) #17	POU3F2 (ENSCPBG00000003544) #18	MMS22L (ENSCPBG00000003510) #19	KLHL32 (ENSCPBG00000003479) #20	NDUFAF4 (ENSCPBG00000003460) #22	GPR63 (ENSCPBG00000003454) #23	FHL5 (ENSCPBG00000003113) #24	UFL1 (ENSCPBG00000003072) #25	FUT9 (ENSCPBG00000003059) #26	MANEA (ENSCPBG00000003029) #27	ENSCPBG00000003009	EPHA7 (ENSCPBG00000002925) #28
Chinese turtle	MODERN SPECIES	717	MCHR2 (ENSPSIG00000002570) #9	PRDM13 (ENSPSIG00000002567) #10	ENSPSIG00000001440	CCNC (ENSPSIG00000002562) #11	ENSPSIG00000002560 #12	USP45 (ENSPSIG00000002556) #13	PNISR (ENSPSIG00000002547) #14	COQ3 (ENSPSIG00000002536) #15	FAXC (ENSPSIG00000002534) #16	FBXL4 (ENSPSIG00000002517) #17	ENSPSIG00000001431	ENSPSIG00000002514	MMS22L (ENSPSIG00000002486) #19	ENSPSIG00000002482	KLHL32 (ENSPSIG00000002471) #20	NDUFAF4 (ENSPSIG00000001424) #22	GPR63 (ENSPSIG00000001421) #23	ENSPSIG00000002468	FHL5 (ENSPSIG00000002455) #24	UFL1 (ENSPSIG00000002403) #25	FUT9 (ENSPSIG00000001412) #26	ENSPSIG00000001406	MANEA (ENSPSIG00000002385) #27	ENSPSIG00000001402	EPHA7 (ENSPSIG00000002375) #28
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00940000157179.i.b #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Episquamata	ANCESTRAL SPECIES		ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Argentine black and white tegu	MODERN SPECIES	2	ENSSMRG00000013339	GRIK2 (ENSSMRG00000013342)	ASCC3 (ENSSMRG00000013348) #7	SIM1 (ENSSMRG00000013349) #8	PRDM13 (ENSSMRG00000013350) #10	CCNC (ENSSMRG00000013351) #11	ENSSMRG00000013352 #12	USP45 (ENSSMRG00000013353) #13	PNISR (ENSSMRG00000013354) #14	COQ3 (ENSSMRG00000013355) #15	FAXC (ENSSMRG00000013356) #16	FBXL4 (ENSSMRG00000013357) #17	POU3F2 (ENSSMRG00000013358) #18	MMS22L (ENSSMRG00000013360) #19	KLHL32 (ENSSMRG00000013361) #20	NDUFAF4 (ENSSMRG00000013362) #22	GPR63 (ENSSMRG00000013363) #23	FHL5 (ENSSMRG00000013364) #24	UFL1 (ENSSMRG00000013365) #25	ENSSMRG00000013366	FUT9 (ENSSMRG00000013367) #26	MANEA (ENSSMRG00000013371) #27	ENSSMRG00000013372	EPHA7 (ENSSMRG00000013374) #28	IGFBPL1 (ENSSMRG00000013378)	TOMM5 (ENSSMRG00000013380)	FRMPD1 (ENSSMRG00000013381)	TRMT10B (ENSSMRG00000013382)	ENSSMRG00000013383	DCAF10 (ENSSMRG00000013384)	ENSSMRG00000013385
Common wall lizard	MODERN SPECIES	11	SIM1 (ENSPMRG00000007689) #8	ENSPMRG00000007681	ENSPMRG00000007677	PRDM13 (ENSPMRG00000007672) #10	CCNC (ENSPMRG00000007622) #11	ENSPMRG00000007610 #12	USP45 (ENSPMRG00000007604) #13	PNISR (ENSPMRG00000007593) #14	COQ3 (ENSPMRG00000007589) #15	FAXC (ENSPMRG00000007581) #16	FBXL4 (ENSPMRG00000007564) #17	POU3F2 (ENSPMRG00000007554) #18	ENSPMRG00000007551	MMS22L (ENSPMRG00000007506) #19	KLHL32 (ENSPMRG00000007472) #20	NDUFAF4 (ENSPMRG00000007459) #22	FHL5 (ENSPMRG00000007449) #24	UFL1 (ENSPMRG00000007427) #25	ENSPMRG00000007411 #26	ENSPMRG00000007400 #26	MANEA (ENSPMRG00000007391) #27	ENSPMRG00000007387	ENSPMRG00000007378	EPHA7 (ENSPMRG00000007345) #28	ENSPMRG00000007331	ENSPMRG00000007316	MAP3K7 (ENSPMRG00000007292) #29	BACH2 (ENSPMRG00000007281) #30	GJA10 (ENSPMRG00000007276) #31	CASP8AP2 (ENSPMRG00000007259) #33	MDN1 (ENSPMRG00000005041) #34
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT01100000263543.b.m.a.a.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Elapidae	ANCESTRAL SPECIES		ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095.a #26	ENSGT00390000016054.a #27	ENSGT00940000160189.i.b #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Indian cobra	MODERN SPECIES		HACE1 (ENSNNAG00000001627)	GRIK2 (ENSNNAG00000002042)	ASCC3 (ENSNNAG00000002415) #7	SIM1 (ENSNNAG00000002455) #8	PRDM13 (ENSNNAG00000002464) #10	CCNC (ENSNNAG00000002473) #11	ENSNNAG00000002486 #12	USP45 (ENSNNAG00000002498) #13	PNISR (ENSNNAG00000002535) #14	COQ3 (ENSNNAG00000002557) #15	FAXC (ENSNNAG00000002571) #16	FBXL4 (ENSNNAG00000002586) #17	POU3F2 (ENSNNAG00000002590) #18	MMS22L (ENSNNAG00000002613) #19	KLHL32 (ENSNNAG00000002678) #20	NDUFAF4 (ENSNNAG00000002699) #22	GPR63 (ENSNNAG00000002705) #23	FHL5 (ENSNNAG00000002712) #24	UFL1 (ENSNNAG00000002722) #25	ENSNNAG00000002743 #26	MANEA (ENSNNAG00000002745) #27	ENSNNAG00000002749	EPHA7 (ENSNNAG00000002760) #28	MAP3K7 (ENSNNAG00000002778) #29	BACH2 (ENSNNAG00000002797) #30	GJA10 (ENSNNAG00000002802) #31	CASP8AP2 (ENSNNAG00000002807) #33	MDN1 (ENSNNAG00000002821) #34	LYRM2 (ENSNNAG00000002865) #35	ANKRD6 (ENSNNAG00000002872) #36	RRAGD (ENSNNAG00000002891) #37
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00940000153295.b	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719.m #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095.a #26	ENSGT00390000016054.a #27	ENSGT00940000160189.i.b #28	ENSGT00940000160189.i.a #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000153295.b	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719.m #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00390000011769 #19	ENSGT00940000157179.i.a #20	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095.a #26	ENSGT00390000016054.a #27	ENSGT00940000160189.i.b #28	ENSGT00940000160189.i.a #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.e #36	ENSGT00950000183031.A.a.b #37
Mainland tiger snake	MODERN SPECIES	16	HACE1 (ENSNSUG00000017909)	GRIK2 (ENSNSUG00000017907)	ASCC3 (ENSNSUG00000017904) #7	SIM1 (ENSNSUG00000017903) #8	PRDM13 (ENSNSUG00000017902) #10	CCNC (ENSNSUG00000017884) #11	ENSNSUG00000017883	USP45 (ENSNSUG00000017882) #13	PNISR (ENSNSUG00000017881) #14	COQ3 (ENSNSUG00000017880) #15	FAXC (ENSNSUG00000017879) #16	FBXL4 (ENSNSUG00000017878) #17	MMS22L (ENSNSUG00000017876) #19	ENSNSUG00000017875 #20	ENSNSUG00000017874 #20	NDUFAF4 (ENSNSUG00000017873) #22	GPR63 (ENSNSUG00000017872) #23	FHL5 (ENSNSUG00000017871) #24	UFL1 (ENSNSUG00000017870) #25	ENSNSUG00000017869 #26	MANEA (ENSNSUG00000017868) #27	EPHA7 (ENSNSUG00000017867) #28	ENSNSUG00000017864	MAP3K7 (ENSNSUG00000017528) #29	ENSNSUG00000017526 #30	GJA10 (ENSNSUG00000017525) #31	CASP8AP2 (ENSNSUG00000017524) #33	MDN1 (ENSNSUG00000017521) #34	LYRM2 (ENSNSUG00000017520) #35	ENSNSUG00000017519 #36	ENSNSUG00000017518 #36
Eastern brown snake	MODERN SPECIES	4	ASCC3 (ENSPTXG00000007623) #7	SIM1 (ENSPTXG00000007685) #8	PRDM13 (ENSPTXG00000007686) #10	CCNC (ENSPTXG00000007689) #11	ENSPTXG00000007690	USP45 (ENSPTXG00000007692) #13	PNISR (ENSPTXG00000007694) #14	COQ3 (ENSPTXG00000007696) #15	FAXC (ENSPTXG00000007699) #16	FBXL4 (ENSPTXG00000007702) #17	POU3F2 (ENSPTXG00000007705) #18	ENSPTXG00000007707	MMS22L (ENSPTXG00000007709) #19	ENSPTXG00000007719 #20	ENSPTXG00000007720 #20	NDUFAF4 (ENSPTXG00000007722) #22	GPR63 (ENSPTXG00000007723) #23	FHL5 (ENSPTXG00000007724) #24	UFL1 (ENSPTXG00000007728) #25	ENSPTXG00000007733 #26	MANEA (ENSPTXG00000007735) #27	EPHA7 (ENSPTXG00000007737) #28	MAP3K7 (ENSPTXG00000007738) #29	ENSPTXG00000007740 #30	GJA10 (ENSPTXG00000007742) #31	CASP8AP2 (ENSPTXG00000007744) #33	MDN1 (ENSPTXG00000007755) #34	LYRM2 (ENSPTXG00000007976) #35	ANKRD6 (ENSPTXG00000007978) #36	RRAGD (ENSPTXG00000007981) #37	UBE2J1 (ENSPTXG00000007982)
Blue-lipped sea krait	MODERN SPECIES	2644																NDUFAF4 (ENSLLTG00000001621) #22	GPR63 (ENSLLTG00000001627) #23
Lizard	MODERN SPECIES		ENSACAG00000010359	CCNC (ENSACAG00000040637) #11	USP45 (ENSACAG00000010371) #13	PNISR (ENSACAG00000010421) #14	COQ3 (ENSACAG00000010498) #15	ENSACAG00000010511 #16	ENSACAG00000036887 #16	FBXL4 (ENSACAG00000010524) #17	POU3F2 (ENSACAG00000023192) #18	ENSACAG00000037359	ENSACAG00000045087	ENSACAG00000035405	MMS22L (ENSACAG00000010536) #19	KLHL32 (ENSACAG00000002122) #20	ENSACAG00000039665	NDUFAF4 (ENSACAG00000002121) #22	GPR63 (ENSACAG00000002117) #23	FHL5 (ENSACAG00000041735) #24	ENSACAG00000043109	ENSACAG00000043362	ENSACAG00000044317	ENSACAG00000042473	MAP3K7 (ENSACAG00000008524) #29	BACH2 (ENSACAG00000014366) #30	GJA10 (ENSACAG00000014390) #31	CASP8AP2 (ENSACAG00000014391) #33	MDN1 (ENSACAG00000014404) #34	LYRM2 (ENSACAG00000014449) #35	ANKRD6 (ENSACAG00000014451) #36	ENSACAG00000014502	ENSACAG00000035716
tuatara	MODERN SPECIES	84													MMS22L (ENSSPUG00000013851) #19	ENSSPUG00000013823 #20	ENSSPUG00000013814 #21	NDUFAF4 (ENSSPUG00000013808) #22	GPR63 (ENSSPUG00000013804) #23	FHL5 (ENSSPUG00000013793) #24	UFL1 (ENSSPUG00000013778) #25	FUT9 (ENSSPUG00000013772) #26
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Theria	ANCESTRAL SPECIES	4	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000008820.f	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000008820.f	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000008820.f	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Diprotodontia_a	ANCESTRAL SPECIES	23	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000008820.f	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Common wonbat	MODERN SPECIES	36	MCHR2 (ENSVURG00010007191) #9	ENSVURG00010007184	PRDM13 (ENSVURG00010007171) #10	CCNC (ENSVURG00010007161) #11	ENSVURG00010007146 #12	ENSVURG00010007135 #13	PNISR (ENSVURG00010007123) #14	ENSVURG00010007119 #15	FAXC (ENSVURG00010007107) #16	ENSVURG00010007094	FBXL4 (ENSVURG00010007082) #17	POU3F2 (ENSVURG00010007077) #18	ENSVURG00010007059	MMS22L (ENSVURG00010006988) #19	KLHL32 (ENSVURG00010006966) #21	NDUFAF4 (ENSVURG00010006941) #22	GPR63 (ENSVURG00010006938) #23	FHL5 (ENSVURG00010006924) #24	UFL1 (ENSVURG00010006905) #25	FUT9 (ENSVURG00010006896) #26	MANEA (ENSVURG00010006886) #27	ENSVURG00010006882	EPHA7 (ENSVURG00010006869) #28	ENSVURG00010006855	ENSVURG00010006843	ENSVURG00010006836	MAP3K7 (ENSVURG00010006796) #29	BACH2 (ENSVURG00010006782) #30	GJA10 (ENSVURG00010006770) #31	CASP8AP2 (ENSVURG00010006758) #33	ENSVURG00010006747
koala	MODERN SPECIES	72	ASCC3 (ENSPCIG00000017288) #7	SIM1 (ENSPCIG00000013858) #8	MCHR2 (ENSPCIG00000031129) #9	ENSPCIG00000032972	CCNC (ENSPCIG00000000512) #11	ENSPCIG00000000500 #12	USP45 (ENSPCIG00000000483) #13	PNISR (ENSPCIG00000000469) #14	COQ3 (ENSPCIG00000000455) #15	FAXC (ENSPCIG00000000444) #16	FBXL4 (ENSPCIG00000000383) #17	ENSPCIG00000031044	POU3F2 (ENSPCIG00000000353) #18	MMS22L (ENSPCIG00000023806) #19	KLHL32 (ENSPCIG00000023810) #21	NDUFAF4 (ENSPCIG00000007875) #22	FHL5 (ENSPCIG00000023243) #24	UFL1 (ENSPCIG00000023251) #25	FUT9 (ENSPCIG00000023261) #26	MANEA (ENSPCIG00000012397) #27	ENSPCIG00000012396	ENSPCIG00000036595
Tasmanian devil	MODERN SPECIES	3	GRIK2 (ENSSHAG00000018207)	ASCC3 (ENSSHAG00000016496) #7	SIM1 (ENSSHAG00000016220) #8	MCHR2 (ENSSHAG00000014523) #9	PRDM13 (ENSSHAG00000013340) #10	CCNC (ENSSHAG00000013087) #11	ENSSHAG00000012967 #12	USP45 (ENSSHAG00000012542) #13	PNISR (ENSSHAG00000012240) #14	COQ3 (ENSSHAG00000011955) #15	FAXC (ENSSHAG00000029301) #16	FBXL4 (ENSSHAG00000006900) #17	POU3F2 (ENSSHAG00000025884) #18	MMS22L (ENSSHAG00000017024) #19	KLHL32 (ENSSHAG00000016625) #21	NDUFAF4 (ENSSHAG00000030054) #22	FHL5 (ENSSHAG00000015265) #24	UFL1 (ENSSHAG00000015118) #25	FUT9 (ENSSHAG00000014009) #26	ENSSHAG00000028790	MANEA (ENSSHAG00000010074) #27	ENSSHAG00000022985	EPHA7 (ENSSHAG00000016194) #28	MAP3K7 (ENSSHAG00000017677) #29	BACH2 (ENSSHAG00000016295) #30	ENSSHAG00000016250 #31	CASP8AP2 (ENSSHAG00000016180) #33	MDN1 (ENSSHAG00000015498) #34	ENSSHAG00000024861 #35	ANKRD6 (ENSSHAG00000015016) #36	RRAGD (ENSSHAG00000014220) #37
Opossum	MODERN SPECIES	1	MCHR2 (ENSMODG00000018088) #9	PRDM13 (ENSMODG00000018089) #10	CCNC (ENSMODG00000018091) #11	ENSMODG00000027875	USP45 (ENSMODG00000018098) #13	ENSMODG00000042999	PNISR (ENSMODG00000018115) #14	COQ3 (ENSMODG00000018116) #15	FAXC (ENSMODG00000018119) #16	FBXL4 (ENSMODG00000018121) #17	POU3F2 (ENSMODG00000018122) #18	ENSMODG00000039437	ENSMODG00000018124	MMS22L (ENSMODG00000018127) #19	KLHL32 (ENSMODG00000018129) #21	ENSMODG00000038074 #22	GPR63 (ENSMODG00000018132) #23	ENSMODG00000018134 #24	UFL1 (ENSMODG00000018137) #25	FUT9 (ENSMODG00000023384) #26	ENSMODG00000023385	MANEA (ENSMODG00000018142) #27	ENSMODG00000037917	ENSMODG00000046593	EPHA7 (ENSMODG00000018150) #28	ENSMODG00000044142	ENSMODG00000018165	ENSMODG00000023387	MAP3K7 (ENSMODG00000018170) #29	BACH2 (ENSMODG00000018176) #30	GJA10 (ENSMODG00000018178) #31
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000164385.a.b	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Suina	ANCESTRAL SPECIES	18	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Chacoan peccary	MODERN SPECIES	60								USP45 (ENSCWAG00000016345) #13	PNISR (ENSCWAG00000016193) #14	COQ3 (ENSCWAG00000016156) #15	FAXC (ENSCWAG00000016070) #16	FBXL4 (ENSCWAG00000016030) #17	POU3F2 (ENSCWAG00000016022) #18	MMS22L (ENSCWAG00000015699) #19	KLHL32 (ENSCWAG00000014845) #21	NDUFAF4 (ENSCWAG00000014782) #22	GPR63 (ENSCWAG00000014769) #23	FHL5 (ENSCWAG00000014715) #24	UFL1 (ENSCWAG00000014651) #25	FUT9 (ENSCWAG00000014636) #26	MANEA (ENSCWAG00000014597) #27	ENSCWAG00000014567	EPHA7 (ENSCWAG00000014418) #28	MAP3K7 (ENSCWAG00000014214) #29	BACH2 (ENSCWAG00000014171) #30	GJA10 (ENSCWAG00000014157) #31	CASP8AP2 (ENSCWAG00000014135) #33	MDN1 (ENSCWAG00000012540) #34	LYRM2 (ENSCWAG00000012454) #35	ANKRD6 (ENSCWAG00000011657) #36	RRAGD (ENSCWAG00000011523) #37
Pig	MODERN SPECIES		ENSSSCG00000031854	ENSSSCG00000004355	PRDM13 (ENSSSCG00000004354) #10	CCNC (ENSSSCG00000004353) #11	ENSSSCG00000038757	USP45 (ENSSSCG00000004351) #13	ENSSSCG00000050732	PNISR (ENSSSCG00000037594) #14	COQ3 (ENSSSCG00000004349) #15	FBXL4 (ENSSSCG00000004347) #17	POU3F2 (ENSSSCG00000056101) #18	ENSSSCG00000044799	ENSSSCG00000049009	MMS22L (ENSSSCG00000004344) #19	KLHL32 (ENSSSCG00000027002) #21	NDUFAF4 (ENSSSCG00000004342) #22	GPR63 (ENSSSCG00000035240) #23	FHL5 (ENSSSCG00000004340) #24	UFL1 (ENSSSCG00000004339) #25	ENSSSCG00000042849	MANEA (ENSSSCG00000035648) #27	EPHA7 (ENSSSCG00000004336) #28	ENSSSCG00000057380	MAP3K7 (ENSSSCG00000004334) #29	ENSSSCG00000044269	BACH2 (ENSSSCG00000004332) #30	GJA10 (ENSSSCG00000004330) #31	CASP8AP2 (ENSSSCG00000004331) #33	ENSSSCG00000054691	MDN1 (ENSSSCG00000004328) #34	LYRM2 (ENSSSCG00000004324) #35
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Percora_a	DUPLICATION
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000156143 #8	ENSGT00940000155206.c.a	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.a #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000184876	ENSGT00940000160189 #28	ENSGT00940000174032	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000155206.c.a	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.a #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000184876	ENSGT00940000160189 #28	ENSGT00940000174032	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Caprinae	ANCESTRAL SPECIES	33	ENSGT00940000155206.c.a	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625.c #11	ENSGT00940000164932	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.a #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	24	SIM1 (ENSOARG00020006280) #8	ENSOARG00020006360	MCHR2 (ENSOARG00020006398) #9	PRDM13 (ENSOARG00020006456) #10	ENSOARG00020006550	CCNC (ENSOARG00020006653) #11	TSTD3 (ENSOARG00020006801)	USP45 (ENSOARG00020006844) #13	PNISR (ENSOARG00020007109) #14	COQ3 (ENSOARG00020007243) #15	FAXC (ENSOARG00020007328) #16	FBXL4 (ENSOARG00020007441) #17	POU3F2 (ENSOARG00020007533) #18	MMS22L (ENSOARG00020007563) #19	KLHL32 (ENSOARG00020007827) #21	ENSOARG00020008188 #22	GPR63 (ENSOARG00020008232) #23	FHL5 (ENSOARG00020008247) #24	UFL1 (ENSOARG00020008328) #25	FUT9 (ENSOARG00020008422) #26	ENSOARG00020008459	EPHA7 (ENSOARG00020008528) #28	ENSOARG00020008706	ENSOARG00020008732	MAP3K7 (ENSOARG00020008829) #29	BACH2 (ENSOARG00020009103) #30	GJA10 (ENSOARG00020009138) #31	CASP8AP2 (ENSOARG00020009190) #33	LYRM2 (ENSOARG00020009458) #34	ANKRD6 (ENSOARG00020011876) #36	ENSOARG00020012098
Rambouillet Sheep	MODERN SPECIES	16	ENSOARG00020014644	ENSOARG00020014591	SGF29 (ENSOARG00020014549)	NUPR1 (ENSOARG00020026084)	IL27 (ENSOARG00020026079)	ENSOARG00020026072	CLN3 (ENSOARG00020026043)	EIF3C (ENSOARG00020026031)	ENSOARG00020026028	ATXN2L (ENSOARG00020026002)	TUFM (ENSOARG00020025991)	SH2B1 (ENSOARG00020025973)	ATP2A1 (ENSOARG00020025958)	RABEP2 (ENSOARG00020025948)	CD19 (ENSOARG00020025940)	ENSOARG00020025935 #22	ENSOARG00020025930	SPNS1 (ENSOARG00020025911)	LAT (ENSOARG00020025902)	SBK1 (ENSOARG00020025897)	XPO6 (ENSOARG00020025881)	GSG1L (ENSOARG00020025869)	GTF3C1 (ENSOARG00020025654)	IL21R (ENSOARG00020025605)	ENSOARG00020025596	HS3ST4 (ENSOARG00020025592)	ENSOARG00020025585	ENSOARG00020025580	AQP8 (ENSOARG00020025576)	LCMT1 (ENSOARG00020025565)	ENSOARG00020025553
Goat	MODERN SPECIES	28	SIM1 (ENSCHIG00000010900) #8	ENSCHIG00000009763	MCHR2 (ENSCHIG00000014417) #9	PRDM13 (ENSCHIG00000006628) #10	ENSCHIG00000020922	ENSCHIG00000016858 #11	ENSCHIG00000013830	USP45 (ENSCHIG00000013909) #13	PNISR (ENSCHIG00000017747) #14	COQ3 (ENSCHIG00000011202) #15	ENSCHIG00000010184 #16	FBXL4 (ENSCHIG00000016349) #17	POU3F2 (ENSCHIG00000008214) #18	MMS22L (ENSCHIG00000019370) #19	KLHL32 (ENSCHIG00000011484) #21	ENSCHIG00000019756 #22	GPR63 (ENSCHIG00000007995) #23	ENSCHIG00000024264	FHL5 (ENSCHIG00000010777) #24	UFL1 (ENSCHIG00000016763) #25	ENSCHIG00000014831	FUT9 (ENSCHIG00000004315) #26	ENSCHIG00000022283	MANEA (ENSCHIG00000015191) #27	ENSCHIG00000020259	EPHA7 (ENSCHIG00000020693) #28	ENSCHIG00000009618	ENSCHIG00000014680	ENSCHIG00000022626	ENSCHIG00000022738	MAP3K7 (ENSCHIG00000011803) #29
Bovinae	ANCESTRAL SPECIES	31	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000155206.c.a	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.a #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000184876	ENSGT00940000160189 #28	ENSGT00940000174032	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Bos	ANCESTRAL SPECIES	19	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000155206.c.b.b	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625 #11	ENSGT00940000164601.e	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.a #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000184876	ENSGT00940000154647.i.a.a.a.b	ENSGT00940000160189 #28	ENSGT00940000174032	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35
Bos_b	ANCESTRAL SPECIES	24	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000155206.c.b.b	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625 #11	ENSGT00940000164601.e	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.a #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000184876	ENSGT00940000154647.i.a.a.a.b	ENSGT00940000160189 #28	ENSGT00940000174032	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35
Cow	MODERN SPECIES	28	ENSBTAG00000014104	ENSBTAG00000052778	MCHR2 (ENSBTAG00000005449) #9	PRDM13 (ENSBTAG00000006095) #10	ENSBTAG00000054078	CCNC (ENSBTAG00000015744) #11	USP45 (ENSBTAG00000018528) #13	TSTD3 (ENSBTAG00000038931)	PNISR (ENSBTAG00000019730) #14	COQ3 (ENSBTAG00000019729) #15	FAXC (ENSBTAG00000044061) #16	FBXL4 (ENSBTAG00000005729) #17	POU3F2 (ENSBTAG00000024773) #18	MMS22L (ENSBTAG00000000629) #19	KLHL32 (ENSBTAG00000005301) #21	NDUFAF4 (ENSBTAG00000003174) #22	GPR63 (ENSBTAG00000002915) #23	FHL5 (ENSBTAG00000001803) #24	UFL1 (ENSBTAG00000020410) #25	ENSBTAG00000051626	ENSBTAG00000051581	FUT9 (ENSBTAG00000007989) #26	MANEA (ENSBTAG00000005026) #27	ENSBTAG00000033083	ENSBTAG00000003743	EPHA7 (ENSBTAG00000021420) #28	ENSBTAG00000055091	MAP3K7 (ENSBTAG00000002625) #29	BACH2 (ENSBTAG00000020713) #30	GJA10 (ENSBTAG00000011315) #31	CASP8AP2 (ENSBTAG00000011313) #33
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005030383	ENSBIXG00005030391	MCHR2 (ENSBIXG00005030398) #9	PRDM13 (ENSBIXG00005030415) #10	ENSBIXG00005030422	ENSBIXG00005030448 #11	ENSBIXG00005030467	USP45 (ENSBIXG00005030475) #13	PNISR (ENSBIXG00005030498) #14	COQ3 (ENSBIXG00005030514) #15	FAXC (ENSBIXG00005030527) #16	FBXL4 (ENSBIXG00005030544) #17	POU3F2 (ENSBIXG00005030555) #18	MMS22L (ENSBIXG00005030633) #19	KLHL32 (ENSBIXG00005030681) #21	NDUFAF4 (ENSBIXG00005030722) #22	GPR63 (ENSBIXG00005030728) #23	FHL5 (ENSBIXG00005030746) #24	UFL1 (ENSBIXG00005030761) #25	ENSBIXG00005030792 #26	MANEA (ENSBIXG00005030810) #27	ENSBIXG00005030830	ENSBIXG00005030843	EPHA7 (ENSBIXG00005030866) #28	ENSBIXG00005030893	MAP3K7 (ENSBIXG00005030985) #29	BACH2 (ENSBIXG00005031006) #30	GJA10 (ENSBIXG00005031010) #31	CASP8AP2 (ENSBIXG00005031017) #33	MDN1 (ENSBIXG00005031179) #34	LYRM2 (ENSBIXG00005031350) #35
Bos_a	ANCESTRAL SPECIES	18	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000155206.c.b.b	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.a #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000184876	ENSGT00940000154647.i.a.a.a.b	ENSGT00940000160189 #28	ENSGT00940000174032	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35
Domestic yak	MODERN SPECIES	1	ENSBGRG00000003594	ENSBGRG00000003580	PRDM13 (ENSBGRG00000026581) #10	ENSBGRG00000026578	ENSBGRG00000026554 #11	TSTD3 (ENSBGRG00000026535)	USP45 (ENSBGRG00000026528) #13	PNISR (ENSBGRG00000026524) #14	COQ3 (ENSBGRG00000026518) #15	FAXC (ENSBGRG00000026514) #16	FBXL4 (ENSBGRG00000026508) #17	POU3F2 (ENSBGRG00000026502) #18	ENSBGRG00000026495	MMS22L (ENSBGRG00000026462) #19	KLHL32 (ENSBGRG00000026432) #21	NDUFAF4 (ENSBGRG00000026419) #22	GPR63 (ENSBGRG00000026414) #23	FHL5 (ENSBGRG00000026411) #24	UFL1 (ENSBGRG00000026399) #25	ENSBGRG00000026392	MANEA (ENSBGRG00000026383) #27	ENSBGRG00000026378	ENSBGRG00000026363	EPHA7 (ENSBGRG00000026337) #28	ENSBGRG00000026331	ENSBGRG00000026330	MAP3K7 (ENSBGRG00000026265) #29	BACH2 (ENSBGRG00000026244) #30	GJA10 (ENSBGRG00000026240) #31	CASP8AP2 (ENSBGRG00000026235) #33	MDN1 (ENSBGRG00000024886) #34
Wild yak	MODERN SPECIES	478													ENSBMUG00000003211	MMS22L (ENSBMUG00000003338) #19	KLHL32 (ENSBMUG00000003416) #21	NDUFAF4 (ENSBMUG00000003440) #22	GPR63 (ENSBMUG00000003468) #23	FHL5 (ENSBMUG00000003532) #24	UFL1 (ENSBMUG00000003542) #25
American bison	MODERN SPECIES	2973	MCHR2 (ENSBBBG00000005313) #9	ENSBBBG00000019599	PRDM13 (ENSBBBG00000019612) #10	ENSBBBG00000007045	ENSBBBG00000019737 #11	TSTD3 (ENSBBBG00000008950)	USP45 (ENSBBBG00000007013) #13	PNISR (ENSBBBG00000019913) #14	COQ3 (ENSBBBG00000005393) #15	FAXC (ENSBBBG00000019944) #16	FBXL4 (ENSBBBG00000019956) #17	ENSBBBG00000005119 #18	ENSBBBG00000019962	MMS22L (ENSBBBG00000020025) #19	KLHL32 (ENSBBBG00000005436) #21	NDUFAF4 (ENSBBBG00000020115) #22	GPR63 (ENSBBBG00000020122) #23	FHL5 (ENSBBBG00000020131) #24	UFL1 (ENSBBBG00000005072) #25	FUT9 (ENSBBBG00000020143) #26	MANEA (ENSBBBG00000020146) #27	ENSBBBG00000020157	ENSBBBG00000008391 #28	ENSBBBG00000020181 #28	ENSBBBG00000020189 #28	ENSBBBG00000020198	MAP3K7 (ENSBBBG00000000569) #29	BACH2 (ENSBBBG00000000547) #30	GJA10 (ENSBBBG00000000542) #31	CASP8AP2 (ENSBBBG00000000534) #33	MDN1 (ENSBBBG00000020587) #34
Siberian musk deer	MODERN SPECIES	57	MCHR2 (ENSMMSG00000011392) #9	PRDM13 (ENSMMSG00000011437) #10	ENSMMSG00000011452	ENSMMSG00000011528 #11	ENSMMSG00000012283	ENSMMSG00000012312 #13	PNISR (ENSMMSG00000012362) #14	COQ3 (ENSMMSG00000012403) #15	FAXC (ENSMMSG00000012455) #16	FBXL4 (ENSMMSG00000012478) #17	POU3F2 (ENSMMSG00000012495) #18	ENSMMSG00000012510	MMS22L (ENSMMSG00000012530) #19	KLHL32 (ENSMMSG00000012591) #21	ENSMMSG00000013052	NDUFAF4 (ENSMMSG00000013073) #22	GPR63 (ENSMMSG00000013085) #23	FHL5 (ENSMMSG00000013095) #24	UFL1 (ENSMMSG00000013113) #25	FUT9 (ENSMMSG00000013147) #26	ENSMMSG00000013154	MANEA (ENSMMSG00000013181) #27
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000001627.b #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000001627.b #22
Caprinae	ANCESTRAL SPECIES	48	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000165111	ENSGT00940000162988	ENSGT00940000162233	ENSGT00520000055625.a	ENSGT00940000155202.i.b	ENSGT00940000161186.B	ENSGT00940000154517.gb.a	ENSGT00940000155616.c.b	ENSGT00530000063528.B	ENSGT00390000004304	ENSGT00940000161545	ENSGT00940000160514	ENSGT00390000001627.b #22	ENSGT00940000164483	ENSGT00990000203619.A.a	ENSGT01060000248589.C	ENSGT00940000155600.b	ENSGT00940000160782	ENSGT00940000154443.b.a.mb	ENSGT00940000165666	ENSGT00940000155375.c	ENSGT00390000001021	ENSGT00390000006290	ENSGT00940000163590	ENSGT00390000008856.k	ENSGT00940000153737.b	ENSGT00500000044890.a.a	ENSGT00940000156153
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020022263	ENSOARG00020022249	ENSOARG00020022221	ENSOARG00020022201	ENSOARG00020022162	ENSOARG00020022130	DIPK2B (ENSOARG00020021990)	KDM6A (ENSOARG00020020551)	ENSOARG00020020467	FUNDC1 (ENSOARG00020020429)	ENSOARG00020020414	NDP (ENSOARG00020020392)	MAOB (ENSOARG00020020199)	MAOA (ENSOARG00020020034)	ENSOARG00020019978	ENSOARG00020019953 #22	ENSOARG00020019938	GPR82 (ENSOARG00020019888)	CASK (ENSOARG00020018716)	NYX (ENSOARG00020018604)	DDX3X (ENSOARG00020017500)	USP9X (ENSOARG00020017297)	MED14 (ENSOARG00020016379)	CXorf38 (ENSOARG00020016232)	ENSOARG00020016210	ENSOARG00020015636	BCOR (ENSOARG00020015351)	ENSOARG00020015318	MID1IP1 (ENSOARG00020021499)	TSPAN7 (ENSOARG00020021392)	ENSOARG00020021363
Goat	MODERN SPECIES	29	APEX2 (ENSCHIG00000019916)	PFKFB1 (ENSCHIG00000023388)	ENSCHIG00000015519	ENSCHIG00000021372	ENSCHIG00000011583	ENSCHIG00000015092	KDM6A (ENSCHIG00000026240)	DIPK2B (ENSCHIG00000014928)	ENSCHIG00000011225	FUNDC1 (ENSCHIG00000019943)	EFHC2 (ENSCHIG00000005059)	ENSCHIG00000025084	NDP (ENSCHIG00000013603)	ENSCHIG00000022374	ENSCHIG00000017570	ENSCHIG00000026014 #22	ENSCHIG00000009838	FOXR2 (ENSCHIG00000019350)	MAGEH1 (ENSCHIG00000020251)	MED14 (ENSCHIG00000012146)	CXorf38 (ENSCHIG00000024567)	ENSCHIG00000019990	ENSCHIG00000013150	MID1IP1 (ENSCHIG00000003191)	TSPAN7 (ENSCHIG00000016883)	XK (ENSCHIG00000003190)	CYBB (ENSCHIG00000012563)	ENSCHIG00000006980	DYNLT3 (ENSCHIG00000006920)	SYTL5 (ENSCHIG00000012520)	ENSCHIG00000019872
Yarkand deer	MODERN SPECIES	20	ASCC3 (ENSCHYG00000024791) #7	SIM1 (ENSCHYG00000024834) #8	ENSCHYG00000024861	PRDM13 (ENSCHYG00000024927) #10	ENSCHYG00000024960	CCNC (ENSCHYG00000025007) #11	TSTD3 (ENSCHYG00000025097)	USP45 (ENSCHYG00000025122) #13	PNISR (ENSCHYG00000025150) #14	COQ3 (ENSCHYG00000025175) #15	FAXC (ENSCHYG00000025221) #16	FBXL4 (ENSCHYG00000025242) #17	POU3F2 (ENSCHYG00000025261) #18	MMS22L (ENSCHYG00000025279) #19	KLHL32 (ENSCHYG00000025369) #21	NDUFAF4 (ENSCHYG00000025688) #22	FHL5 (ENSCHYG00000025707) #24	UFL1 (ENSCHYG00000025727) #25	FUT9 (ENSCHYG00000025764) #26	MANEA (ENSCHYG00000025768) #27	ENSCHYG00000013893	EPHA7 (ENSCHYG00000013949) #28	ENSCHYG00000014181	MAP3K7 (ENSCHYG00000014445) #29	BACH2 (ENSCHYG00000014828) #30	GJA10 (ENSCHYG00000014902) #31	CASP8AP2 (ENSCHYG00000014964) #33	MDN1 (ENSCHYG00000015140) #34	ENSCHYG00000015660 #35	ANKRD6 (ENSCHYG00000015728) #36	RRAGD (ENSCHYG00000016025) #37
Cetacea	ANCESTRAL SPECIES	18	ENSGT01010000228757	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000167379	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000000475.vb.b	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT01010000228757	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000000475.vb.b	ENSGT00940000160189 #28	ENSGT00390000013048.q.b.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00620000088063 #33	ENSGT01090000260070.D #31	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT01010000228757	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000000475.vb.b	ENSGT00940000160189 #28	ENSGT00940000153378.b.b.f	ENSGT00390000013048.q.b.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00620000088063 #33	ENSGT01090000260070.D #31	ENSGT00550000074802 #34	ENSGT00390000002957 #35
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00940000153052.c.b.a.b.k.a.a.b	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000000475.vb.b	ENSGT00940000160189 #28	ENSGT00940000153378.b.b.f	ENSGT00390000013048.q.b.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00620000088063 #33	ENSGT01090000260070.D #31	ENSGT00550000074802 #34	ENSGT00390000002957 #35
Narwhal	MODERN SPECIES	301	SIM1 (ENSMMNG00015009809) #8	MCHR2 (ENSMMNG00015009778) #9	PRDM13 (ENSMMNG00015009755) #10	CCNC (ENSMMNG00015009719) #11	ENSMMNG00015009693	USP45 (ENSMMNG00015009670) #13	PNISR (ENSMMNG00015009651) #14	COQ3 (ENSMMNG00015009635) #15	FAXC (ENSMMNG00015009621) #16	FBXL4 (ENSMMNG00015009601) #17	POU3F2 (ENSMMNG00015009596) #18	ENSMMNG00015009584	MMS22L (ENSMMNG00015009572) #19	ENSMMNG00015009563	KLHL32 (ENSMMNG00015009546) #21	NDUFAF4 (ENSMMNG00015009535) #22	GPR63 (ENSMMNG00015009528) #23	FHL5 (ENSMMNG00015009515) #24	UFL1 (ENSMMNG00015009485) #25	ENSMMNG00015009473	FUT9 (ENSMMNG00015009462) #26	MANEA (ENSMMNG00015009453) #27	EPHA7 (ENSMMNG00015009430) #28	ENSMMNG00015009418	ENSMMNG00015009405	ENSMMNG00015009402	MAP3K7 (ENSMMNG00015009366) #29	BACH2 (ENSMMNG00015009351) #30	CASP8AP2 (ENSMMNG00015009338) #33	GJA10 (ENSMMNG00015009331) #31	MDN1 (ENSMMNG00015009226) #34
Beluga whale	MODERN SPECIES	80	ASCC3 (ENSDLEG00000016917) #7	SIM1 (ENSDLEG00000016898) #8	MCHR2 (ENSDLEG00000016838) #9	PRDM13 (ENSDLEG00000016823) #10	CCNC (ENSDLEG00000016748) #11	TSTD3 (ENSDLEG00000016726)	USP45 (ENSDLEG00000016693) #13	PNISR (ENSDLEG00000016648) #14	COQ3 (ENSDLEG00000016636) #15	FAXC (ENSDLEG00000016622) #16	FBXL4 (ENSDLEG00000016608) #17	POU3F2 (ENSDLEG00000016603) #18	ENSDLEG00000016590	ENSDLEG00000016567 #19	KLHL32 (ENSDLEG00000016517) #21	NDUFAF4 (ENSDLEG00000016486) #22	GPR63 (ENSDLEG00000016479) #23	FHL5 (ENSDLEG00000016466) #24	UFL1 (ENSDLEG00000016431) #25	ENSDLEG00000016425	FUT9 (ENSDLEG00000016416) #26	MANEA (ENSDLEG00000016408) #27	ENSDLEG00000016395	EPHA7 (ENSDLEG00000016378) #28	LY6E (ENSDLEG00000019478)	ENSDLEG00000019466	MAP3K7 (ENSDLEG00000019447) #29	BACH2 (ENSDLEG00000019443) #30	CASP8AP2 (ENSDLEG00000019439) #33	GJA10 (ENSDLEG00000019437) #31	MDN1 (ENSDLEG00000019356) #34
Vaquita	MODERN SPECIES	3	ENSPSNG00000016469	ASCC3 (ENSPSNG00000016505) #7	ENSPSNG00000016595 #8	MCHR2 (ENSPSNG00000016680) #9	PRDM13 (ENSPSNG00000016806) #10	CCNC (ENSPSNG00000016881) #11	ENSPSNG00000017064	USP45 (ENSPSNG00000017100) #13	PNISR (ENSPSNG00000017222) #14	COQ3 (ENSPSNG00000017302) #15	FAXC (ENSPSNG00000017384) #16	FBXL4 (ENSPSNG00000017467) #17	POU3F2 (ENSPSNG00000017509) #18	MMS22L (ENSPSNG00000017548) #19	KLHL32 (ENSPSNG00000004483) #21	NDUFAF4 (ENSPSNG00000004520) #22	GPR63 (ENSPSNG00000004544) #23	FHL5 (ENSPSNG00000004559) #24	UFL1 (ENSPSNG00000004593) #25	ENSPSNG00000004641	FUT9 (ENSPSNG00000004680) #26	MANEA (ENSPSNG00000004706) #27	ENSPSNG00000004826	EPHA7 (ENSPSNG00000004863) #28	ENSPSNG00000004891	ENSPSNG00000004923	ENSPSNG00000004983	BACH2 (ENSPSNG00000005033) #30	CASP8AP2 (ENSPSNG00000005060) #33	GJA10 (ENSPSNG00000005086) #31	MDN1 (ENSPSNG00000005154) #34
Dolphin	MODERN SPECIES	136														MMS22L (ENSTTRG00000010936) #19	KLHL32 (ENSTTRG00000010920) #21	NDUFAF4 (ENSTTRG00000010911) #22
Sperm whale	MODERN SPECIES	1	SIM1 (ENSPCTG00005017163) #8	ENSPCTG00005017288	ENSPCTG00005017310	MCHR2 (ENSPCTG00005017331) #9	PRDM13 (ENSPCTG00005017399) #10	ENSPCTG00005017463	ENSPCTG00005017522 #12	USP45 (ENSPCTG00005017566) #13	PNISR (ENSPCTG00005017617) #14	COQ3 (ENSPCTG00005017704) #15	FAXC (ENSPCTG00005017812) #16	FBXL4 (ENSPCTG00005017834) #17	POU3F2 (ENSPCTG00005017877) #18	MMS22L (ENSPCTG00005017935) #19	KLHL32 (ENSPCTG00005018091) #21	NDUFAF4 (ENSPCTG00005018336) #22	GPR63 (ENSPCTG00005018376) #23	FHL5 (ENSPCTG00005018387) #24	UFL1 (ENSPCTG00005018456) #25	FUT9 (ENSPCTG00005018516) #26	MANEA (ENSPCTG00005018534) #27	ENSPCTG00005018576	EPHA7 (ENSPCTG00005018592) #28	MAP3K7 (ENSPCTG00005008798) #29	ENSPCTG00005009179 #30	CASP8AP2 (ENSPCTG00005009208) #33	MDN1 (ENSPCTG00005009355) #34	LYRM2 (ENSPCTG00005011162) #35	ANKRD6 (ENSPCTG00005011245) #36	RRAGD (ENSPCTG00005011867) #37	UBE2J1 (ENSPCTG00005011919)
Blue whale	MODERN SPECIES	3	ENSBMSG00010009216 #7	SIM1 (ENSBMSG00010009233) #8	ENSBMSG00010009250	MCHR2 (ENSBMSG00010009258) #9	PRDM13 (ENSBMSG00010009275) #10	CCNC (ENSBMSG00010009323) #11	ENSBMSG00010009354	USP45 (ENSBMSG00010009370) #13	PNISR (ENSBMSG00010009388) #14	COQ3 (ENSBMSG00010009417) #15	FAXC (ENSBMSG00010009429) #16	FBXL4 (ENSBMSG00010009444) #17	POU3F2 (ENSBMSG00010009453) #18	MMS22L (ENSBMSG00010009479) #19	KLHL32 (ENSBMSG00010009564) #21	NDUFAF4 (ENSBMSG00010009703) #22	GPR63 (ENSBMSG00010009713) #23	FHL5 (ENSBMSG00010009724) #24	UFL1 (ENSBMSG00010009738) #25	FUT9 (ENSBMSG00010009753) #26	MANEA (ENSBMSG00010009767) #27	ENSBMSG00010009776	ENSBMSG00010009783	EPHA7 (ENSBMSG00010009802) #28	ENSBMSG00010009879	MAP3K7 (ENSBMSG00010009904) #29	BACH2 (ENSBMSG00010009952) #30	GJA10 (ENSBMSG00010009965) #31	CASP8AP2 (ENSBMSG00010009976) #33	MDN1 (ENSBMSG00010010010) #34	LYRM2 (ENSBMSG00010010072) #35
Camelidae	ANCESTRAL SPECIES	26	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00620000088063 #33	ENSGT01090000260070.D #31	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Arabian camel	MODERN SPECIES	34	GRIK2 (ENSCDRG00005012001)	ASCC3 (ENSCDRG00005014245) #7	SIM1 (ENSCDRG00005014556) #8	MCHR2 (ENSCDRG00005014661) #9	PRDM13 (ENSCDRG00005014704) #10	CCNC (ENSCDRG00005014798) #11	ENSCDRG00005015124 #12	USP45 (ENSCDRG00005015163) #13	ENSCDRG00005015288	PNISR (ENSCDRG00005015317) #14	COQ3 (ENSCDRG00005015402) #15	FAXC (ENSCDRG00005015492) #16	FBXL4 (ENSCDRG00005015542) #17	MMS22L (ENSCDRG00005015723) #19	KLHL32 (ENSCDRG00005015893) #21	NDUFAF4 (ENSCDRG00005016114) #22	FHL5 (ENSCDRG00005016145) #24	UFL1 (ENSCDRG00005016186) #25	FUT9 (ENSCDRG00005016245) #26	MANEA (ENSCDRG00005016287) #27	EPHA7 (ENSCDRG00005016323) #28	ENSCDRG00005016450	MAP3K7 (ENSCDRG00005016534) #29	BACH2 (ENSCDRG00005017369) #30	CASP8AP2 (ENSCDRG00005017411) #33	GJA10 (ENSCDRG00005017475) #31	MDN1 (ENSCDRG00005017545) #34	LYRM2 (ENSCDRG00005017690) #35	ANKRD6 (ENSCDRG00005017721) #36	RRAGD (ENSCDRG00005017800) #37	UBE2J1 (ENSCDRG00005017848)
Alpaca	MODERN SPECIES	2014														MMS22L (ENSVPAG00000001272) #19	KLHL32 (ENSVPAG00000001270) #21	NDUFAF4 (ENSVPAG00000001269) #22	GPR63 (ENSVPAG00000001268) #23	FHL5 (ENSVPAG00000001267) #24	UFL1 (ENSVPAG00000001264) #25	FUT9 (ENSVPAG00000001263) #26	MANEA (ENSVPAG00000001261) #27
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652	ENSGT00940000156864
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652	ENSGT00940000156864
Greater horseshoe bat	MODERN SPECIES	21	PRDM13 (ENSRFEG00010002847) #10	CCNC (ENSRFEG00010002800) #11	ENSRFEG00010002763 #12	USP45 (ENSRFEG00010002705) #13	ENSRFEG00010002660	PNISR (ENSRFEG00010002631) #14	COQ3 (ENSRFEG00010002591) #15	FAXC (ENSRFEG00010002564) #16	FBXL4 (ENSRFEG00010002537) #17	POU3F2 (ENSRFEG00010002524) #18	ENSRFEG00010002515	ENSRFEG00010002509	MMS22L (ENSRFEG00010002485) #19	ENSRFEG00010002452	KLHL32 (ENSRFEG00010002386) #21	NDUFAF4 (ENSRFEG00010002322) #22	GPR63 (ENSRFEG00010002311) #23	FHL5 (ENSRFEG00010002299) #24	UFL1 (ENSRFEG00010002220) #25	FUT9 (ENSRFEG00010002196) #26	MANEA (ENSRFEG00010002169) #27	EPHA7 (ENSRFEG00010002115) #28	MAP3K7 (ENSRFEG00010002027) #29	BACH2 (ENSRFEG00010001974) #30	CASP8AP2 (ENSRFEG00010001895) #33	MDN1 (ENSRFEG00010001745) #34	LYRM2 (ENSRFEG00010001660) #35	ANKRD6 (ENSRFEG00010001567) #36	RRAGD (ENSRFEG00010001517) #37	UBE2J1 (ENSRFEG00010001468)	GABRR2 (ENSRFEG00010001440)
Microbat	MODERN SPECIES	1098			ENSMLUG00000005991	PRDM13 (ENSMLUG00000001899) #10	CCNC (ENSMLUG00000012815) #11	ENSMLUG00000026267 #12	ENSMLUG00000022530 #13	PNISR (ENSMLUG00000005206) #14	COQ3 (ENSMLUG00000005199) #15	FAXC (ENSMLUG00000005188) #16	FBXL4 (ENSMLUG00000016143) #17	POU3F2 (ENSMLUG00000016141) #18	ENSMLUG00000026417	MMS22L (ENSMLUG00000010584) #19	KLHL32 (ENSMLUG00000001568) #21	NDUFAF4 (ENSMLUG00000013570) #22	GPR63 (ENSMLUG00000007917) #23	FHL5 (ENSMLUG00000006024) #24	UFL1 (ENSMLUG00000012197) #25	FUT9 (ENSMLUG00000004410) #26
Megabat	MODERN SPECIES	6544																NDUFAF4 (ENSPVAG00000014253) #22
Equus	ANCESTRAL SPECIES	29	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00390000017385.p	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Horse	MODERN SPECIES	1	GRIK2 (ENSECAG00000020215)	ASCC3 (ENSECAG00000012013) #7	SIM1 (ENSECAG00000009161) #8	MCHR2 (ENSECAG00000008037) #9	PRDM13 (ENSECAG00000007855) #10	CCNC (ENSECAG00000024439) #11	TSTD3 (ENSECAG00000024361) #12	ENSECAG00000038166	USP45 (ENSECAG00000023010) #13	PNISR (ENSECAG00000019782) #14	COQ3 (ENSECAG00000016788) #15	FAXC (ENSECAG00000016044) #16	FBXL4 (ENSECAG00000015268) #17	MMS22L (ENSECAG00000009576) #19	KLHL32 (ENSECAG00000023835) #21	NDUFAF4 (ENSECAG00000023456) #22	GPR63 (ENSECAG00000053424) #23	FHL5 (ENSECAG00000023174) #24	UFL1 (ENSECAG00000014582) #25	FUT9 (ENSECAG00000014562) #26	MANEA (ENSECAG00000013040) #27	ENSECAG00000035015	ENSECAG00000048232	ENSECAG00000036577	EPHA7 (ENSECAG00000021315) #28	MAP3K7 (ENSECAG00000010753) #29	BACH2 (ENSECAG00000010522) #30	GJA10 (ENSECAG00000000988) #31	CASP8AP2 (ENSECAG00000006638) #33	MDN1 (ENSECAG00000008291) #34	LYRM2 (ENSECAG00000058998) #35
Donkey	MODERN SPECIES	16	SIM1 (ENSEASG00005006300) #8	MCHR2 (ENSEASG00005006295) #9	PRDM13 (ENSEASG00005006291) #10	CCNC (ENSEASG00005006285) #11	ENSEASG00005035127 #12	USP45 (ENSEASG00005006164) #13	ENSEASG00005006143	PNISR (ENSEASG00005006141) #14	COQ3 (ENSEASG00005006138) #15	FAXC (ENSEASG00005006137) #16	FBXL4 (ENSEASG00005006132) #17	ENSEASG00005031507	ENSEASG00005006121	ENSEASG00005006075	KLHL32 (ENSEASG00005025751) #21	NDUFAF4 (ENSEASG00005023899) #22	GPR63 (ENSEASG00005025897) #23	FHL5 (ENSEASG00005006061) #24	UFL1 (ENSEASG00005006057) #25	FUT9 (ENSEASG00005031320) #26	MANEA (ENSEASG00005006055) #27	ENSEASG00005006054	EPHA7 (ENSEASG00005006051) #28	MAP3K7 (ENSEASG00005006040) #29	BACH2 (ENSEASG00005006035) #30	GJA10 (ENSEASG00005006030) #31	CASP8AP2 (ENSEASG00005006023) #33	MDN1 (ENSEASG00005005849) #34	ANKRD6 (ENSEASG00005005722) #36	RRAGD (ENSEASG00005005702) #37	UBE2J1 (ENSEASG00005005697)
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00940000170209	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000185306.a	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1	PRDM13 (ENSAMEG00000008949) #10	ENSAMEG00000008954	ENSAMEG00000008959 #12	USP45 (ENSAMEG00000008960) #13	ENSAMEG00000023959	PNISR (ENSAMEG00000011196) #14	COQ3 (ENSAMEG00000011217) #15	FAXC (ENSAMEG00000011234) #16	FBXL4 (ENSAMEG00000011248) #17	ENSAMEG00000030876	POU3F2 (ENSAMEG00000011263) #18	ENSAMEG00000011268	ENSAMEG00000024597	MMS22L (ENSAMEG00000002533) #19	KLHL32 (ENSAMEG00000014557) #21	ENSAMEG00000027131 #22	GPR63 (ENSAMEG00000018802) #23	FHL5 (ENSAMEG00000000604) #24	UFL1 (ENSAMEG00000000542) #25	FUT9 (ENSAMEG00000019229) #26	ENSAMEG00000015467 #27	ENSAMEG00000028175	ENSAMEG00000028839	EPHA7 (ENSAMEG00000013161) #28	MAP3K7 (ENSAMEG00000003532) #29	BACH2 (ENSAMEG00000003595) #30	GJA10 (ENSAMEG00000026572) #31	CASP8AP2 (ENSAMEG00000003601) #33	ENSAMEG00000026496	MDN1 (ENSAMEG00000000581) #34	LYRM2 (ENSAMEG00000000580) #35
Giant Panda	MODERN SPECIES	2236																ENSAMEG00000027596 #22
Ursus	ANCESTRAL SPECIES	131	ENSGT00940000154272.A #9	ENSGT00940000153664.A.a.m.b.b.a.a	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275.a	ENSGT00940000162208 #18	ENSGT00940000170209	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00950000185306.a	ENSGT00940000160189 #28
Polar bear	MODERN SPECIES	268	SIM1 (ENSUMAG00000021405) #8	MCHR2 (ENSUMAG00000021410) #9	ENSUMAG00000021420	CCNC (ENSUMAG00000021426) #11	ENSUMAG00000021431 #12	USP45 (ENSUMAG00000021451) #13	ENSUMAG00000021582	PNISR (ENSUMAG00000021583) #14	COQ3 (ENSUMAG00000021586) #15	FAXC (ENSUMAG00000021588) #16	FBXL4 (ENSUMAG00000021593) #17	ENSUMAG00000021595	ENSUMAG00000021596 #18	ENSUMAG00000021597	KLHL32 (ENSUMAG00000021603) #21	NDUFAF4 (ENSUMAG00000021610) #22	GPR63 (ENSUMAG00000021612) #23	FHL5 (ENSUMAG00000021613) #24	UFL1 (ENSUMAG00000021615) #25	FUT9 (ENSUMAG00000021619) #26	MANEA (ENSUMAG00000021627) #27	ENSUMAG00000021640	EPHA7 (ENSUMAG00000021654) #28
American black bear	MODERN SPECIES	1201																NDUFAF4 (ENSUAMG00000021192) #22	GPR63 (ENSUAMG00000021193) #23
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
American mink	MODERN SPECIES	29	MCHR2 (ENSNVIG00000000206) #9	ENSNVIG00000000217	PRDM13 (ENSNVIG00000000224) #10	CCNC (ENSNVIG00000000242) #11	ENSNVIG00000000432 #12	USP45 (ENSNVIG00000000456) #13	ENSNVIG00000000725	PNISR (ENSNVIG00000000733) #14	ENSNVIG00000000753 #15	FAXC (ENSNVIG00000000759) #16	FBXL4 (ENSNVIG00000000772) #17	POU3F2 (ENSNVIG00000000788) #18	ENSNVIG00000000796	E2QRD4 (ENSNVIG00000000804) #19	KLHL32 (ENSNVIG00000000904) #21	NDUF4 (ENSNVIG00000000993) #22	GPR63 (ENSNVIG00000001031) #23	FHL5 (ENSNVIG00000001039) #24	UFL1 (ENSNVIG00000001053) #25	FUT9 (ENSNVIG00000001082) #26	ENSNVIG00000001095	MANEA (ENSNVIG00000001132) #27	EPHA7 (ENSNVIG00000001205) #28	ENSNVIG00000001235	MAP3K7 (ENSNVIG00000001249) #29	ENSNVIG00000001407	BACH2 (ENSNVIG00000001430) #30	GJA10 (ENSNVIG00000001447) #31	CASP8AP2 (ENSNVIG00000001457) #33	MDN1 (ENSNVIG00000001470) #34	ENSNVIG00000001789 #35
Canidae	ANCESTRAL SPECIES	6	ENSGT00940000154272.A #9	ENSGT01050000247939	ENSGT00940000160200 #10	ENSGT00940000167379	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000163337.b.b	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT01050000247939	ENSGT00940000160200 #10	ENSGT00940000155625.o.b #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000002144.d	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000163337.b.b	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Dog	MODERN SPECIES	3	SIM1 (ENSCAFG00845005849) #8	MCHR2 (ENSCAFG00845005808) #9	ENSCAFG00845005768	PRDM13 (ENSCAFG00845005747) #10	ENSCAFG00845005709 #11	ENSCAFG00845005684 #12	ENSCAFG00845005674 #13	ENSCAFG00845005651 #13	PNISR (ENSCAFG00845005607) #14	COQ3 (ENSCAFG00845005564) #15	FAXC (ENSCAFG00845005522) #16	FBXL4 (ENSCAFG00845005491) #17	POU3F2 (ENSCAFG00845009467) #18	MMS22L (ENSCAFG00845009177) #19	KLHL32 (ENSCAFG00845008809) #21	ENSCAFG00845008713 #22	GPR63 (ENSCAFG00845008695) #23	FHL5 (ENSCAFG00845008651) #24	UFL1 (ENSCAFG00845008549) #25	FUT9 (ENSCAFG00845008503) #26	ENSCAFG00845008430	ENSCAFG00845008377	MANEA (ENSCAFG00845008347) #27	ENSCAFG00845008260	EPHA7 (ENSCAFG00845008210) #28	MAP3K7 (ENSCAFG00845008051) #29	BACH2 (ENSCAFG00845007986) #30	GJA10 (ENSCAFG00845007961) #31	CASP8AP2 (ENSCAFG00845007899) #33	MDN1 (ENSCAFG00845007335) #34	LYRM2 (ENSCAFG00845007103) #35
Dingo	MODERN SPECIES	370	ENSCAFG00020016837	ENSCAFG00020016831	PRDM13 (ENSCAFG00020016828) #10	ENSCAFG00020016817	ENSCAFG00020016799 #11	ENSCAFG00020016795 #12	ENSCAFG00020016782 #13	ENSCAFG00020016776 #13	PNISR (ENSCAFG00020016765) #14	COQ3 (ENSCAFG00020016760) #15	FAXC (ENSCAFG00020016750) #16	FBXL4 (ENSCAFG00020016742) #17	POU3F2 (ENSCAFG00020016738) #18	ENSCAFG00020016728	KLHL32 (ENSCAFG00020016702) #21	NDUFAF4 (ENSCAFG00020016697) #22	GPR63 (ENSCAFG00020016694) #23	FHL5 (ENSCAFG00020016686) #24	UFL1 (ENSCAFG00020016268) #25	FUT9 (ENSCAFG00020016261) #26	ENSCAFG00020016257	ENSCAFG00020016251 #27	EPHA7 (ENSCAFG00020016245) #28	ENSCAFG00020016241	ENSCAFG00020016240 #29	ENSCAFG00020016238	BACH2 (ENSCAFG00020016233) #30	GJA10 (ENSCAFG00020016231) #31	CASP8AP2 (ENSCAFG00020016222) #33	MDN1 (ENSCAFG00020016117) #34	LYRM2 (ENSCAFG00020016108) #35
Red fox	MODERN SPECIES	43	ENSVVUG00000015391	SIM1 (ENSVVUG00000015382) #8	MCHR2 (ENSVVUG00000015376) #9	ENSVVUG00000015365	CCNC (ENSVVUG00000015355) #11	TSTD3 (ENSVVUG00000015354) #12	USP45 (ENSVVUG00000015099) #13	ENSVVUG00000015060	PNISR (ENSVVUG00000015048) #14	COQ3 (ENSVVUG00000015036) #15	FAXC (ENSVVUG00000015030) #16	FBXL4 (ENSVVUG00000015024) #17	ENSVVUG00000015013	MMS22L (ENSVVUG00000014995) #19	KLHL32 (ENSVVUG00000014969) #21	NDUFAF4 (ENSVVUG00000014961) #22	GPR63 (ENSVVUG00000014960) #23	FHL5 (ENSVVUG00000014956) #24	UFL1 (ENSVVUG00000014228) #25	FUT9 (ENSVVUG00000014185) #26	MANEA (ENSVVUG00000014165) #27	EPHA7 (ENSVVUG00000014132) #28	ENSVVUG00000014119	MAP3K7 (ENSVVUG00000014101) #29	ENSVVUG00000014098	BACH2 (ENSVVUG00000014083) #30	GJA10 (ENSVVUG00000014075) #31	CASP8AP2 (ENSVVUG00000014062) #33	ENSVVUG00000014055 #34
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT01000000214434.B.b.e.a.a	ENSGT00950000185306	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT01000000214434.B.b.e.a.a	ENSGT00950000185306	ENSGT00940000160189 #28	ENSGT00510000047029.hb.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT01000000214434.B.b.e.a.a	ENSGT00950000185306	ENSGT00940000160189 #28	ENSGT00510000047029.hb.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35
leopard	MODERN SPECIES	8	MCHR2 (ENSPPRG00000012296) #9	ENSPPRG00000013213	ENSPPRG00000013407	PRDM13 (ENSPPRG00000014466) #10	CCNC (ENSPPRG00000021173) #11	ENSPPRG00000022482 #12	TSTD3 (ENSPPRG00000023365)	USP45 (ENSPPRG00000000211) #13	PNISR (ENSPPRG00000001237) #14	COQ3 (ENSPPRG00000001796) #15	FAXC (ENSPPRG00000002688) #16	FBXL4 (ENSPPRG00000003955) #17	ENSPPRG00000005436	MMS22L (ENSPPRG00000006961) #19	KLHL32 (ENSPPRG00000008719) #21	NDUFAF4 (ENSPPRG00000008944) #22	GPR63 (ENSPPRG00000019835) #23	FHL5 (ENSPPRG00000009641) #24	UFL1 (ENSPPRG00000010323) #25	FUT9 (ENSPPRG00000019962) #26	ENSPPRG00000011189	MANEA (ENSPPRG00000012275) #27	ENSPPRG00000019979	ENSPPRG00000012645	ENSPPRG00000012719	EPHA7 (ENSPPRG00000013359) #28	ENSPPRG00000020096	MAP3K7 (ENSPPRG00000021480) #29	BACH2 (ENSPPRG00000024203) #30	GJA10 (ENSPPRG00000024176) #31	CASP8AP2 (ENSPPRG00000023836) #33
lion	MODERN SPECIES	5	ASCC3 (ENSPLOG00000018850) #7	SIM1 (ENSPLOG00000018732) #8	MCHR2 (ENSPLOG00000018660) #9	PRDM13 (ENSPLOG00000018587) #10	CCNC (ENSPLOG00000018493) #11	ENSPLOG00000018440 #12	USP45 (ENSPLOG00000018326) #13	PNISR (ENSPLOG00000018238) #14	COQ3 (ENSPLOG00000018184) #15	FAXC (ENSPLOG00000018136) #16	FBXL4 (ENSPLOG00000018081) #17	POU3F2 (ENSPLOG00000018042) #18	ENSPLOG00000017984	MMS22L (ENSPLOG00000017912) #19	KLHL32 (ENSPLOG00000017789) #21	NDUFAF4 (ENSPLOG00000017720) #22	GPR63 (ENSPLOG00000017706) #23	FHL5 (ENSPLOG00000017656) #24	UFL1 (ENSPLOG00000017606) #25	FUT9 (ENSPLOG00000017587) #26	MANEA (ENSPLOG00000017551) #27	ENSPLOG00000017526	ENSPLOG00000017509	ENSPLOG00000017491	EPHA7 (ENSPLOG00000017339) #28	ENSPLOG00000017254	MAP3K7 (ENSPLOG00000017159) #29	BACH2 (ENSPLOG00000017111) #30	GJA10 (ENSPLOG00000017087) #31	CASP8AP2 (ENSPLOG00000017057) #33	MDN1 (ENSPLOG00000016910) #34
Tiger	MODERN SPECIES	211				ENSPTIG00000005916	ENSPTIG00000005296	CCNC (ENSPTIG00000019192) #11	TSTD3 (ENSPTIG00000018302)	USP45 (ENSPTIG00000016311) #13	PNISR (ENSPTIG00000015159) #14	COQ3 (ENSPTIG00000014871) #15	FAXC (ENSPTIG00000014344) #16	FBXL4 (ENSPTIG00000013804) #17	ENSPTIG00000013287	MMS22L (ENSPTIG00000011552) #19	KLHL32 (ENSPTIG00000008581) #21	NDUFAF4 (ENSPTIG00000008338) #22	GPR63 (ENSPTIG00000002988) #23	FHL5 (ENSPTIG00000007683) #24	UFL1 (ENSPTIG00000007297) #25	FUT9 (ENSPTIG00000002945) #26	MANEA (ENSPTIG00000006699) #27	ENSPTIG00000002888	ENSPTIG00000002871	ENSPTIG00000005872	EPHA7 (ENSPTIG00000005606) #28
Cat	MODERN SPECIES	236	MCHR2 (ENSFCAG00000022111) #9	ENSFCAG00000024211	PRDM13 (ENSFCAG00000040508) #10	CCNC (ENSFCAG00000007731) #11	ENSFCAG00000026591 #12	USP45 (ENSFCAG00000007166) #13	PNISR (ENSFCAG00000007165) #14	COQ3 (ENSFCAG00000018466) #15	FAXC (ENSFCAG00000007164) #16	FBXL4 (ENSFCAG00000012863) #17	POU3F2 (ENSFCAG00000022988) #18	ENSFCAG00000034525	ENSFCAG00000035980	MMS22L (ENSFCAG00000043637) #19	KLHL32 (ENSFCAG00000044028) #21	NDUFAF4 (ENSFCAG00000043301) #22	GPR63 (ENSFCAG00000028092) #23	FHL5 (ENSFCAG00000024633) #24	UFL1 (ENSFCAG00000007808) #25	FUT9 (ENSFCAG00000003297) #26	MANEA (ENSFCAG00000036280) #27	ENSFCAG00000030894	ENSFCAG00000000429	ENSFCAG00000034817	EPHA7 (ENSFCAG00000018481) #28	ENSFCAG00000046936	MAP3K7 (ENSFCAG00000030907) #29	BACH2 (ENSFCAG00000008901) #30	GJA10 (ENSFCAG00000008899) #31	CASP8AP2 (ENSFCAG00000027150) #33	MDN1 (ENSFCAG00000024717) #34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000001627 #22
Common shrew	MODERN SPECIES	1705																NDUFAF4 (ENSSARG00000006890) #22
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Primates	ANCESTRAL SPECIES	5	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000155828.o.a	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000156143 #8	ENSGT00940000155828.o.a	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00940000156143 #8	ENSGT00940000155828.o.a	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Rhinopithecus	ANCESTRAL SPECIES	521														ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00860000133842.f	ENSGT00940000155095 #26	ENSGT00390000016054.a #27
Golden snub-nosed monkey	MODERN SPECIES	1964														MMS22L (ENSRROG00000023488) #19	KLHL32 (ENSRROG00000016009) #21	NDUFAF4 (ENSRROG00000034424) #22	GPR63 (ENSRROG00000025815) #23	FHL5 (ENSRROG00000041502) #24
Black snub-nosed monkey	MODERN SPECIES	837														MMS22L (ENSRBIG00000039753) #19	KLHL32 (ENSRBIG00000032528) #21	NDUFAF4 (ENSRBIG00000031576) #22	GPR63 (ENSRBIG00000024055) #23	FHL5 (ENSRBIG00000034367) #24	ENSRBIG00000034077	UFL1 (ENSRBIG00000043159) #25	ENSRBIG00000044701	FUT9 (ENSRBIG00000018860) #26	MANEA (ENSRBIG00000041347) #27
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00940000154552.b.g.b	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00390000008610.a.b.a.a.a.t.h.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00390000008610.a.b.a.a.a.t.h.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184.f #17	ENSGT00940000155184.e #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00390000000153.l.a.cb.i.a.a	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35
Olive baboon	MODERN SPECIES	16	SIM1 (ENSPANG00000011218) #8	ENSPANG00000042982	ENSPANG00000047035	MCHR2 (ENSPANG00000006099) #9	PRDM13 (ENSPANG00000017638) #10	CCNC (ENSPANG00000010898) #11	USP45 (ENSPANG00000018342) #13	PNISR (ENSPANG00000022195) #14	COQ3 (ENSPANG00000020865) #15	FAXC (ENSPANG00000011254) #16	ENSPANG00000040842	FBXL4 (ENSPANG00000021958) #17	POU3F2 (ENSPANG00000045698) #18	MMS22L (ENSPANG00000006712) #19	KLHL32 (ENSPANG00000024390) #21	NDUFAF4 (ENSPANG00000038646) #22	GPR63 (ENSPANG00000023781) #23	FHL5 (ENSPANG00000000712) #24	UFL1 (ENSPANG00000024032) #25	FUT9 (ENSPANG00000006352) #26	MANEA (ENSPANG00000004978) #27	ENSPANG00000043325	ENSPANG00000043370	ENSPANG00000049735	EPHA7 (ENSPANG00000020691) #28	ENSPANG00000042299	ENSPANG00000050211	ENSPANG00000045484	MAP3K7 (ENSPANG00000021959) #29	BACH2 (ENSPANG00000006817) #30	GJA10 (ENSPANG00000011128) #31
Cercopithecinae_d	ANCESTRAL SPECIES	35	ENSGT00940000160200 #10	ENSGT00390000008610.a.b.a.a.a.t.h.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184.f #17	ENSGT00940000155184.e #17	ENSGT00910000147275	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00390000000153.l.a.cb.h.a	ENSGT00910000146649	ENSGT00940000157785 #29	ENSGT00910000148408	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00940000153314.a.b.a.k	ENSGT00620000088063 #33
Drill	MODERN SPECIES	1578											ENSMLEG00000035598	ENSMLEG00000000714	ENSMLEG00000028234	MMS22L (ENSMLEG00000038624) #19	KLHL32 (ENSMLEG00000041275) #21	NDUFAF4 (ENSMLEG00000028950) #22	GPR63 (ENSMLEG00000027461) #23	ENSMLEG00000034661	FHL5 (ENSMLEG00000030422) #24	UFL1 (ENSMLEG00000004737) #25
Sooty mangabey	MODERN SPECIES	139	ENSCATG00000041886	CCNC (ENSCATG00000042868) #11	ENSCATG00000029496	USP45 (ENSCATG00000034256) #13	ENSCATG00000036657	PNISR (ENSCATG00000012848) #14	COQ3 (ENSCATG00000009558) #15	FAXC (ENSCATG00000029392) #16	ENSCATG00000034106	FBXL4 (ENSCATG00000045364) #17	ENSCATG00000015127	ENSCATG00000025087	ENSCATG00000009616	MMS22L (ENSCATG00000040956) #19	KLHL32 (ENSCATG00000039902) #21	NDUFAF4 (ENSCATG00000033077) #22	GPR63 (ENSCATG00000018743) #23	FHL5 (ENSCATG00000040405) #24	UFL1 (ENSCATG00000044470) #25	FUT9 (ENSCATG00000018263) #26	MANEA (ENSCATG00000042657) #27	EPHA7 (ENSCATG00000017708) #28	ENSCATG00000039613	ENSCATG00000037109	MAP3K7 (ENSCATG00000043799) #29	ENSCATG00000033625	BACH2 (ENSCATG00000037186) #30	GJA10 (ENSCATG00000005843) #31	CASP8AP2 (ENSCATG00000014543) #33	MDN1 (ENSCATG00000045011) #34	LYRM2 (ENSCATG00000038992) #35
Macaca	ANCESTRAL SPECIES	9	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00390000008610.a.b.a.a.a.t.h.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000014122.i.b.a.a.a.b	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	269													ENSMNEG00000033973	MMS22L (ENSMNEG00000033161) #19	KLHL32 (ENSMNEG00000034222) #21	ENSMNEG00000027972 #22	GPR63 (ENSMNEG00000037435) #23	ENSMNEG00000021169	FHL5 (ENSMNEG00000035209) #24	UFL1 (ENSMNEG00000008786) #25	FUT9 (ENSMNEG00000032000) #26	MANEA (ENSMNEG00000030555) #27
Pig-tailed macaque	MODERN SPECIES	579	ENSMNEG00000039270	BNIP3L (ENSMNEG00000032945)	PNMA2 (ENSMNEG00000021767)	ENSMNEG00000040560	DPYSL2 (ENSMNEG00000031797)	ADRA1A (ENSMNEG00000032467)	STMN4 (ENSMNEG00000042099)	TRIM35 (ENSMNEG00000033062)	PTK2B (ENSMNEG00000032809)	CHRNA2 (ENSMNEG00000036009)	EPHX2 (ENSMNEG00000031898)	CLU (ENSMNEG00000043022)	SCARA3 (ENSMNEG00000037952)	ENSMNEG00000036331	ESCO2 (ENSMNEG00000038253)	ENSMNEG00000007575 #22	PBK (ENSMNEG00000043731)	SCARA5 (ENSMNEG00000043810)	NUGGC (ENSMNEG00000045452)	ELP3 (ENSMNEG00000024316)	ENSMNEG00000021099	PNOC (ENSMNEG00000032474)	ZNF395 (ENSMNEG00000011767)	FBXO16 (ENSMNEG00000045209)	FZD3 (ENSMNEG00000040320)	EXTL3 (ENSMNEG00000038935)	INTS9 (ENSMNEG00000035204)	HMBOX1 (ENSMNEG00000036228)	KIF13B (ENSMNEG00000002442)	DUSP4 (ENSMNEG00000039817)	ENSMNEG00000037297
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00390000008610.a.b.a.a.a.t.h.b	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Crab-eating macaque	MODERN SPECIES	14	MCHR2 (ENSMFAG00000040175) #9	ENSMFAG00000049964	PRDM13 (ENSMFAG00000064719) #10	ENSMFAG00000001955	CCNC (ENSMFAG00000030903) #11	TSTD3 (ENSMFAG00000042059)	USP45 (ENSMFAG00000038745) #13	PNISR (ENSMFAG00000001373) #14	COQ3 (ENSMFAG00000034338) #15	FAXC (ENSMFAG00000041545) #16	FBXL4 (ENSMFAG00000046148) #17	ENSMFAG00000055529	ENSMFAG00000057441	MMS22L (ENSMFAG00000003651) #19	KLHL32 (ENSMFAG00000041275) #21	NDUFAF4 (ENSMFAG00000030804) #22	GPR63 (ENSMFAG00000007033) #23	FHL5 (ENSMFAG00000038694) #24	UFL1 (ENSMFAG00000038476) #25	FUT9 (ENSMFAG00000006659) #26	MANEA (ENSMFAG00000035666) #27	ENSMFAG00000002472	EPHA7 (ENSMFAG00000033589) #28	ENSMFAG00000005773	ENSMFAG00000048694	ENSMFAG00000049903	ENSMFAG00000049481	ENSMFAG00000048262	MAP3K7 (ENSMFAG00000035469) #29	BACH2 (ENSMFAG00000040061) #30	ENSMFAG00000060642
Rhesus	MODERN SPECIES	14	ASCC3 (ENSMMUG00000022287) #7	ENSMMUG00000062661	SIM1 (ENSMMUG00000022285) #8	MCHR2 (ENSMMUG00000000808) #9	PRDM13 (ENSMMUG00000048121) #10	CCNC (ENSMMUG00000004061) #11	TSTD3 (ENSMMUG00000054128)	USP45 (ENSMMUG00000005929) #13	PNISR (ENSMMUG00000005925) #14	COQ3 (ENSMMUG00000050740) #15	FAXC (ENSMMUG00000005923) #16	FBXL4 (ENSMMUG00000001659) #17	POU3F2 (ENSMMUG00000001658) #18	MMS22L (ENSMMUG00000040203) #19	KLHL32 (ENSMMUG00000005093) #21	NDUFAF4 (ENSMMUG00000018843) #22	GPR63 (ENSMMUG00000055593) #23	FHL5 (ENSMMUG00000012621) #24	UFL1 (ENSMMUG00000012616) #25	FUT9 (ENSMMUG00000002598) #26	MANEA (ENSMMUG00000012202) #27	ENSMMUG00000057220	ENSMMUG00000016603	EPHA7 (ENSMMUG00000014867) #28	MAP3K7 (ENSMMUG00000006512) #29	BACH2 (ENSMMUG00000009736) #30	ENSMMUG00000049636	GJA10 (ENSMMUG00000005800) #31	CASP8AP2 (ENSMMUG00000009182) #33	MDN1 (ENSMMUG00000003464) #34	LYRM2 (ENSMMUG00000063166) #35
Vervet Monkey	MODERN SPECIES	4	GRIK2 (ENSCSAG00000014687)	ASCC3 (ENSCSAG00000014674) #7	SIM1 (ENSCSAG00000014652) #8	MCHR2 (ENSCSAG00000014637) #9	PRDM13 (ENSCSAG00000014622) #10	CCNC (ENSCSAG00000014617) #11	USP45 (ENSCSAG00000014609) #13	PNISR (ENSCSAG00000014595) #14	COQ3 (ENSCSAG00000014581) #15	FAXC (ENSCSAG00000014566) #16	FBXL4 (ENSCSAG00000014559) #17	POU3F2 (ENSCSAG00000018978) #18	ENSCSAG00000018979	MMS22L (ENSCSAG00000014547) #19	KLHL32 (ENSCSAG00000014531) #21	NDUFAF4 (ENSCSAG00000014517) #22	GPR63 (ENSCSAG00000018980) #23	ENSCSAG00000014508	FHL5 (ENSCSAG00000014491) #24	UFL1 (ENSCSAG00000014473) #25	ULBP3 (ENSCSAG00000014456)	PPP1R14C (ENSCSAG00000014450)	IYD (ENSCSAG00000014444)	PLEKHG1 (ENSCSAG00000014433)	MTHFD1L (ENSCSAG00000014394)	ENSCSAG00000014290	AKAP12 (ENSCSAG00000014270)	ZBTB2 (ENSCSAG00000014259)	RMND1 (ENSCSAG00000014250)	ARMT1 (ENSCSAG00000014244)	CCDC170 (ENSCSAG00000014238)
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000154552.b.g.b	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00550000074850.k	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000154552.b.g.b	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00550000074850.k	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00940000154552.b.g.b	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00550000074850.k	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Gorilla	MODERN SPECIES	19	SIM1 (ENSGGOG00000017108) #8	MCHR2 (ENSGGOG00000017182) #9	PRDM13 (ENSGGOG00000006947) #10	CCNC (ENSGGOG00000007422) #11	ENSGGOG00000022586	USP45 (ENSGGOG00000000091) #13	ENSGGOG00000036723	PNISR (ENSGGOG00000012944) #14	COQ3 (ENSGGOG00000006696) #15	FAXC (ENSGGOG00000044046) #16	ENSGGOG00000041376	FBXL4 (ENSGGOG00000001187) #17	ENSGGOG00000027466	MMS22L (ENSGGOG00000003187) #19	KLHL32 (ENSGGOG00000003184) #21	NDUFAF4 (ENSGGOG00000038081) #22	GPR63 (ENSGGOG00000028245) #23	FHL5 (ENSGGOG00000004224) #24	UFL1 (ENSGGOG00000013798) #25	FUT9 (ENSGGOG00000037409) #26	MANEA (ENSGGOG00000041243) #27	EPHA7 (ENSGGOG00000006503) #28	MAP3K7 (ENSGGOG00000024243) #29	BACH2 (ENSGGOG00000012497) #30	GJA10 (ENSGGOG00000014072) #31	CASP8AP2 (ENSGGOG00000017136) #33	MDN1 (ENSGGOG00000006850) #34	ENSGGOG00000036584 #35	ANKRD6 (ENSGGOG00000016768) #36	RRAGD (ENSGGOG00000024195) #37	UBE2J1 (ENSGGOG00000013375)
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000154552.b.g.b	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00550000074850.k	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Pan	ANCESTRAL SPECIES	5	ENSGT00940000154552.b.g.b	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000155342.k.a.b	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00550000074850.k	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Bonobo	MODERN SPECIES	19	SIM1 (ENSPPAG00000009797) #8	MCHR2 (ENSPPAG00000029322) #9	PRDM13 (ENSPPAG00000041894) #10	CCNC (ENSPPAG00000028772) #11	TSTD3 (ENSPPAG00000032827)	USP45 (ENSPPAG00000034506) #13	ENSPPAG00000029781	PNISR (ENSPPAG00000027087) #14	COQ3 (ENSPPAG00000000909) #15	FAXC (ENSPPAG00000040951) #16	ENSPPAG00000038020	FBXL4 (ENSPPAG00000031572) #17	ENSPPAG00000038670	MMS22L (ENSPPAG00000027316) #19	KLHL32 (ENSPPAG00000021682) #21	NDUFAF4 (ENSPPAG00000037179) #22	GPR63 (ENSPPAG00000019706) #23	FHL5 (ENSPPAG00000035859) #24	UFL1 (ENSPPAG00000043299) #25	FUT9 (ENSPPAG00000000997) #26	MANEA (ENSPPAG00000043462) #27	EPHA7 (ENSPPAG00000029754) #28	ENSPPAG00000032336	MAP3K7 (ENSPPAG00000027822) #29	BACH2 (ENSPPAG00000030965) #30	GJA10 (ENSPPAG00000041616) #31	CASP8AP2 (ENSPPAG00000043281) #33	MDN1 (ENSPPAG00000005552) #34	ENSPPAG00000036082 #35	ANKRD6 (ENSPPAG00000028701) #36	RRAGD (ENSPPAG00000029815) #37
Chimpanzee	MODERN SPECIES	19	ENSPTRG00000047929	ASCC3 (ENSPTRG00000018448) #7	SIM1 (ENSPTRG00000018447) #8	MCHR2 (ENSPTRG00000018446) #9	PRDM13 (ENSPTRG00000018445) #10	CCNC (ENSPTRG00000018444) #11	TSTD3 (ENSPTRG00000052330)	USP45 (ENSPTRG00000018443) #13	ENSPTRG00000045943	PNISR (ENSPTRG00000018442) #14	COQ3 (ENSPTRG00000018441) #15	FAXC (ENSPTRG00000018440) #16	FBXL4 (ENSPTRG00000018438) #17	MMS22L (ENSPTRG00000018437) #19	KLHL32 (ENSPTRG00000018436) #21	NDUFAF4 (ENSPTRG00000018435) #22	GPR63 (ENSPTRG00000018434) #23	FHL5 (ENSPTRG00000018433) #24	UFL1 (ENSPTRG00000018432) #25	FUT9 (ENSPTRG00000052137) #26	MANEA (ENSPTRG00000018429) #27	EPHA7 (ENSPTRG00000018428) #28	ENSPTRG00000042764	MAP3K7 (ENSPTRG00000018427) #29	BACH2 (ENSPTRG00000018426) #30	GJA10 (ENSPTRG00000018425) #31	CASP8AP2 (ENSPTRG00000045198) #33	MDN1 (ENSPTRG00000018423) #34	ENSPTRG00000018422 #35	ANKRD6 (ENSPTRG00000018421) #36	RRAGD (ENSPTRG00000018420) #37
Human	MODERN SPECIES	18	GRIK2 (ENSG00000164418)	ASCC3 (ENSG00000112249) #7	SIM1 (ENSG00000112246) #8	MCHR2 (ENSG00000152034) #9	PRDM13 (ENSG00000112238) #10	CCNC (ENSG00000112237) #11	TSTD3 (ENSG00000279170)	USP45 (ENSG00000123552) #13	PNISR (ENSG00000132424) #14	COQ3 (ENSG00000132423) #15	FAXC (ENSG00000146267) #16	FBXL4 (ENSG00000112234) #17	POU3F2 (ENSG00000184486) #18	MMS22L (ENSG00000146263) #19	KLHL32 (ENSG00000186231) #21	NDUFAF4 (ENSG00000123545) #22	GPR63 (ENSG00000112218) #23	FHL5 (ENSG00000112214) #24	UFL1 (ENSG00000014123) #25	FUT9 (ENSG00000172461) #26	MANEA (ENSG00000172469) #27	EPHA7 (ENSG00000135333) #28	MAP3K7 (ENSG00000135341) #29	BACH2 (ENSG00000112182) #30	GJA10 (ENSG00000135355) #31	CASP8AP2 (ENSG00000118412) #33	MDN1 (ENSG00000112159) #34	LYRM2 (ENSG00000083099) #35	ANKRD6 (ENSG00000135299) #36	RRAGD (ENSG00000025039) #37	UBE2J1 (ENSG00000198833)
Orangutan	MODERN SPECIES	19	GRIK2 (ENSPPYG00000016870)	ASCC3 (ENSPPYG00000016869) #7	SIM1 (ENSPPYG00000016868) #8	MCHR2 (ENSPPYG00000016867) #9	PRDM13 (ENSPPYG00000016866) #10	CCNC (ENSPPYG00000016865) #11	ENSPPYG00000040827	USP45 (ENSPPYG00000016864) #13	PNISR (ENSPPYG00000025884) #14	COQ3 (ENSPPYG00000016863) #15	FAXC (ENSPPYG00000016862) #16	FBXL4 (ENSPPYG00000016861) #17	POU3F2 (ENSPPYG00000016860) #18	MMS22L (ENSPPYG00000016859) #19	KLHL32 (ENSPPYG00000016858) #21	NDUFAF4 (ENSPPYG00000016857) #22	GPR63 (ENSPPYG00000016856) #23	FHL5 (ENSPPYG00000016855) #24	UFL1 (ENSPPYG00000016854) #25	FUT9 (ENSPPYG00000016853) #26	MANEA (ENSPPYG00000031667) #27	EPHA7 (ENSPPYG00000016851) #28	MAP3K7 (ENSPPYG00000016850) #29	BACH2 (ENSPPYG00000016849) #30	GJA10 (ENSPPYG00000016848) #31	CASP8AP2 (ENSPPYG00000016847) #33	ENSPPYG00000016583	MDN1 (ENSPPYG00000016844) #34	LYRM2 (ENSPPYG00000040476) #35	ANKRD6 (ENSPPYG00000016842) #36	RRAGD (ENSPPYG00000016841) #37
Gibbon	MODERN SPECIES	18	ASCC3 (ENSNLEG00000013890) #7	SIM1 (ENSNLEG00000013870) #8	MCHR2 (ENSNLEG00000013852) #9	PRDM13 (ENSNLEG00000013845) #10	CCNC (ENSNLEG00000013796) #11	ENSNLEG00000027493	USP45 (ENSNLEG00000013744) #13	ENSNLEG00000034852	PNISR (ENSNLEG00000013690) #14	COQ3 (ENSNLEG00000013664) #15	FAXC (ENSNLEG00000030205) #16	FBXL4 (ENSNLEG00000013629) #17	ENSNLEG00000027712	MMS22L (ENSNLEG00000013600) #19	KLHL32 (ENSNLEG00000013575) #21	NDUFAF4 (ENSNLEG00000013568) #22	GPR63 (ENSNLEG00000013561) #23	FHL5 (ENSNLEG00000013537) #24	UFL1 (ENSNLEG00000013481) #25	FUT9 (ENSNLEG00000033460) #26	MANEA (ENSNLEG00000013454) #27	ENSNLEG00000018642	ENSNLEG00000033141	EPHA7 (ENSNLEG00000013448) #28	ENSNLEG00000032739	MAP3K7 (ENSNLEG00000013337) #29	BACH2 (ENSNLEG00000013316) #30	GJA10 (ENSNLEG00000018624) #31	CASP8AP2 (ENSNLEG00000013242) #33	MDN1 (ENSNLEG00000026737) #34	ENSNLEG00000030168 #35
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625.bb #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00390000004524.c.a.b.b.b	ENSGT00950000183031.A.a.b #37
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625.bb #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000156150.e	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00390000004524.c.a.b.b.b
Cebidae_a	ANCESTRAL SPECIES	59	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625.bb #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00910000147275	ENSGT00940000162208 #18	ENSGT00910000147120	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627.e #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000156150.e	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00390000004524.c.a.b.b.b
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	852																ENSCCAG00000021585 #22	GPR63 (ENSCCAG00000031653) #23
Capuchin	MODERN SPECIES	60	ENSCCAG00000037809	SKOR2 (ENSCCAG00000021025)	IER3IP1 (ENSCCAG00000036067)	HDHD2 (ENSCCAG00000022419)	KATNAL2 (ENSCCAG00000027056)	ENSCCAG00000033839	PIAS2 (ENSCCAG00000022843)	ST8SIA5 (ENSCCAG00000023326)	LOXHD1 (ENSCCAG00000024237)	RNF165 (ENSCCAG00000015794)	ENSCCAG00000028369	C18orf25 (ENSCCAG00000013731)	HAUS1 (ENSCCAG00000026991)	ATP5F1A (ENSCCAG00000035404)	PSTPIP2 (ENSCCAG00000026201)	ENSCCAG00000033907 #22	EPG5 (ENSCCAG00000019864)	SIGLEC15 (ENSCCAG00000029871)	SLC14A1 (ENSCCAG00000020737)	SLC14A2 (ENSCCAG00000022464)	SETBP1 (ENSCCAG00000024635)	ENSCCAG00000032254	SYT4 (ENSCCAG00000026016)	RIT2 (ENSCCAG00000029987)	PIK3C3 (ENSCCAG00000019671)	ENSCCAG00000006777	ENSCCAG00000033800	ENSCCAG00000000062
Bolivian squirrel monkey	MODERN SPECIES	49	ENSSBOG00000023836 #11	ENSSBOG00000019505 #12	USP45 (ENSSBOG00000035696) #13	ENSSBOG00000021351	PNISR (ENSSBOG00000023398) #14	COQ3 (ENSSBOG00000020418) #15	FAXC (ENSSBOG00000025542) #16	FBXL4 (ENSSBOG00000025650) #17	ENSSBOG00000034787	POU3F2 (ENSSBOG00000034311) #18	ENSSBOG00000021019	ENSSBOG00000028386	MMS22L (ENSSBOG00000031557) #19	ENSSBOG00000022919	KLHL32 (ENSSBOG00000027745) #21	NDUFAF4 (ENSSBOG00000022582) #22	GPR63 (ENSSBOG00000016862) #23	FHL5 (ENSSBOG00000015413) #24	UFL1 (ENSSBOG00000019048) #25	FUT9 (ENSSBOG00000014527) #26	MANEA (ENSSBOG00000033159) #27	ENSSBOG00000035573	EPHA7 (ENSSBOG00000031938) #28	ENSSBOG00000029795	ENSSBOG00000013925	ENSSBOG00000025608	MAP3K7 (ENSSBOG00000032871) #29	BACH2 (ENSSBOG00000022600) #30	GJA10 (ENSSBOG00000021972) #31	CASP8AP2 (ENSSBOG00000019082) #33	MDN1 (ENSSBOG00000035701) #34
Marmoset	MODERN SPECIES	16	PRDM13 (ENSCJAG00000039816) #10	CCNC (ENSCJAG00000001388) #11	ENSCJAG00000031571 #12	USP45 (ENSCJAG00000001356) #13	PNISR (ENSCJAG00000001335) #14	COQ3 (ENSCJAG00000001326) #15	FAXC (ENSCJAG00000001311) #16	ENSCJAG00000073822	FBXL4 (ENSCJAG00000001288) #17	POU3F2 (ENSCJAG00000039179) #18	ENSCJAG00000087034	ENSCJAG00000076487	ENSCJAG00000073963	MMS22L (ENSCJAG00000001254) #19	KLHL32 (ENSCJAG00000001239) #21	NDUFAF4 (ENSCJAG00000001235) #22	FHL5 (ENSCJAG00000001218) #24	UFL1 (ENSCJAG00000001179) #25	FUT9 (ENSCJAG00000043135) #26	MANEA (ENSCJAG00000047130) #27	ENSCJAG00000063859	EPHA7 (ENSCJAG00000001086) #28	ENSCJAG00000071326	ENSCJAG00000081735	MAP3K7 (ENSCJAG00000001026) #29	BACH2 (ENSCJAG00000001013) #30	GJA10 (ENSCJAG00000001005) #31	CASP8AP2 (ENSCJAG00000000992) #33	MDN1 (ENSCJAG00000000907) #34	ENSCJAG00000068951	ENSCJAG00000073794
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1003	PRDM13 (ENSANAG00000032853) #10	ENSANAG00000038139 #11	ENSANAG00000032988 #12	USP45 (ENSANAG00000033647) #13	ENSANAG00000025978	ENSANAG00000034388	PNISR (ENSANAG00000034879) #14	COQ3 (ENSANAG00000029640) #15	FAXC (ENSANAG00000023665) #16	FBXL4 (ENSANAG00000033454) #17	ENSANAG00000036164	ENSANAG00000035355	ENSANAG00000020850	MMS22L (ENSANAG00000023546) #19	KLHL32 (ENSANAG00000025728) #21	ENSANAG00000021826 #22	GPR63 (ENSANAG00000020144) #23	ENSANAG00000020162	FHL5 (ENSANAG00000029280) #24	UFL1 (ENSANAG00000009120) #25	FUT9 (ENSANAG00000025782) #26	MANEA (ENSANAG00000030909) #27	ENSANAG00000026520	ENSANAG00000037264	EPHA7 (ENSANAG00000025851) #28	MAP3K7 (ENSANAG00000026953) #29	BACH2 (ENSANAG00000020444) #30	GJA10 (ENSANAG00000024124) #31	CASP8AP2 (ENSANAG00000021679) #33	MDN1 (ENSANAG00000034484) #34	LYRM2 (ENSANAG00000033734) #35
Mas night monkey	MODERN SPECIES	966	HARS2 (ENSANAG00000028635)	HARS1 (ENSANAG00000034093)	ENSANAG00000037212	WDR55 (ENSANAG00000029439)	IK (ENSANAG00000037081)	ENSANAG00000036345	TMCO6 (ENSANAG00000034193)	CD14 (ENSANAG00000034732)	ENSANAG00000034215	ENSANAG00000036424	SLC35A4 (ENSANAG00000016426)	ENSANAG00000033588	APBB3 (ENSANAG00000034312)	SRA1 (ENSANAG00000020391)	ANKHD1 (ENSANAG00000035164)	ENSANAG00000035559 #22	ENSANAG00000037215	SLC4A9 (ENSANAG00000035536)	HBEGF (ENSANAG00000025689)	PFDN1 (ENSANAG00000026284)	CYSTM1 (ENSANAG00000036421)	IGIP (ENSANAG00000016486)	PURA (ENSANAG00000035484)	NRG2 (ENSANAG00000020081)	PSD2 (ENSANAG00000036515)	CXXC5 (ENSANAG00000037158)	ENSANAG00000037235	STING1 (ENSANAG00000037295)	SMIM33 (ENSANAG00000020599)	ECSCR (ENSANAG00000037645)	DNAJC18 (ENSANAG00000021021)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00390000001627.f #22
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT01100000263628
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT01100000263628
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C	ENSGT00940000156148
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT01100000263628	ENSGT00940000155574.C
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C	ENSGT00940000156148
Pan	ANCESTRAL SPECIES	2	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00390000007084.c.b.k.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Chimpanzee	MODERN SPECIES	16	SCN5A (ENSPTRG00000014762)	ENSPTRG00000048292	EXOG (ENSPTRG00000014761)	ACVR2B (ENSPTRG00000014760)	XYLB (ENSPTRG00000014758)	SLC22A14 (ENSPTRG00000014757)	SLC22A13 (ENSPTRG00000014756)	OXSR1 (ENSPTRG00000014755)	ENSPTRG00000050479	MYD88 (ENSPTRG00000014754)	ACAA1 (ENSPTRG00000014753)	DLEC1 (ENSPTRG00000014752)	PLCD1 (ENSPTRG00000014751)	VILL (ENSPTRG00000014750)	CTDSPL (ENSPTRG00000014749)	ENSPTRG00000045219 #22	ITGA9 (ENSPTRG00000014748)	ENSPTRG00000023429	GOLGA4 (ENSPTRG00000014746)	LRRFIP2 (ENSPTRG00000014745)	ENSPTRG00000016733	MLH1 (ENSPTRG00000014743)	EPM2AIP1 (ENSPTRG00000042530)	ENSPTRG00000051367	TRANK1 (ENSPTRG00000014741)	ENSPTRG00000045315	DCLK3 (ENSPTRG00000014739)	STAC (ENSPTRG00000014737)	ARPP21 (ENSPTRG00000014736)	PDCD6IP (ENSPTRG00000014735)	CLASP2 (ENSPTRG00000014734)
Bonobo	MODERN SPECIES	16	SCN5A (ENSPPAG00000036665)	ENSPPAG00000022727	EXOG (ENSPPAG00000032881)	ACVR2B (ENSPPAG00000043096)	XYLB (ENSPPAG00000024504)	SLC22A14 (ENSPPAG00000039391)	OXSR1 (ENSPPAG00000028571)	MYD88 (ENSPPAG00000037521)	ENSPPAG00000041044	ENSPPAG00000040424	ENSPPAG00000043368	DLEC1 (ENSPPAG00000041933)	PLCD1 (ENSPPAG00000026688)	VILL (ENSPPAG00000041495)	CTDSPL (ENSPPAG00000004964)	ENSPPAG00000037199 #22	ITGA9 (ENSPPAG00000027284)	ENSPPAG00000040137	GOLGA4 (ENSPPAG00000035295)	LRRFIP2 (ENSPPAG00000039105)	ENSPPAG00000023507	MLH1 (ENSPPAG00000031143)	EPM2AIP1 (ENSPPAG00000021277)	ENSPPAG00000031051	TRANK1 (ENSPPAG00000031125)	ENSPPAG00000032170	ENSPPAG00000028394	STAC (ENSPPAG00000039982)	ENSPPAG00000043215	ARPP21 (ENSPPAG00000032910)	PDCD6IP (ENSPPAG00000029413)
Gorilla	MODERN SPECIES	16	SCN10A (ENSGGOG00000006446)	SCN5A (ENSGGOG00000012938)	EXOG (ENSGGOG00000010779)	ACVR2B (ENSGGOG00000001827)	XYLB (ENSGGOG00000015018)	SLC22A14 (ENSGGOG00000013189)	SLC22A13 (ENSGGOG00000010536)	ENSGGOG00000006333	MYD88 (ENSGGOG00000003831)	ENSGGOG00000037817	ACAA1 (ENSGGOG00000003822)	DLEC1 (ENSGGOG00000003808)	PLCD1 (ENSGGOG00000003801)	VILL (ENSGGOG00000003789)	CTDSPL (ENSGGOG00000038894)	ENSGGOG00000012070 #22	ITGA9 (ENSGGOG00000013044)	ENSGGOG00000023150	GOLGA4 (ENSGGOG00000023859)	LRRFIP2 (ENSGGOG00000001784)	ENSGGOG00000041659	MLH1 (ENSGGOG00000016342)	EPM2AIP1 (ENSGGOG00000027478)	ENSGGOG00000041962	TRANK1 (ENSGGOG00000005691)	ENSGGOG00000042033	DCLK3 (ENSGGOG00000016779)	STAC (ENSGGOG00000013526)	ARPP21 (ENSGGOG00000009337)	ENSGGOG00000024787	CLASP2 (ENSGGOG00000003446)
Gibbon	MODERN SPECIES	19	SCN10A (ENSNLEG00000031545)	SCN5A (ENSNLEG00000005433)	EXOG (ENSNLEG00000005421)	ACVR2B (ENSNLEG00000005401)	XYLB (ENSNLEG00000005394)	ENSNLEG00000005389	SLC22A13 (ENSNLEG00000005376)	OXSR1 (ENSNLEG00000005345)	MYD88 (ENSNLEG00000005333)	ACAA1 (ENSNLEG00000005241)	DLEC1 (ENSNLEG00000005235)	PLCD1 (ENSNLEG00000005174)	VILL (ENSNLEG00000005147)	CTDSPL (ENSNLEG00000028190)	ITGA9 (ENSNLEG00000005089)	ENSNLEG00000034528 #22	ENSNLEG00000005086	GOLGA4 (ENSNLEG00000005062)	LRRFIP2 (ENSNLEG00000004992)	ENSNLEG00000033765	MLH1 (ENSNLEG00000004886)	EPM2AIP1 (ENSNLEG00000018533)	TRANK1 (ENSNLEG00000004872)	ENSNLEG00000028218	DCLK3 (ENSNLEG00000004871)	ENSNLEG00000033044	STAC (ENSNLEG00000004845)	ARPP21 (ENSNLEG00000004823)	ENSNLEG00000028397	PDCD6IP (ENSNLEG00000004764)	CLASP2 (ENSNLEG00000004683)
Cercopithecidae	DUPLICATION
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000001627.f.a.a.a #22
Rhinopithecus	ANCESTRAL SPECIES	103									ENSGT00940000165725	ENSGT00390000018390.jc	ENSGT00950000183158.D.b.f	ENSGT00950000182870.b	ENSGT00950000182870.a.b	ENSGT00490000043356.a	ENSGT00530000063301.a.b	ENSGT00390000001627.f.a.a.a #22	ENSGT00950000183187.A	ENSGT00940000159843	ENSGT00940000162699	ENSGT00940000153766.B	ENSGT00940000155753.h	ENSGT00940000160101	ENSGT00940000161137	ENSGT00940000157938	ENSGT00940000157875	ENSGT00940000157542	ENSGT00940000160441	ENSGT00940000157091	ENSGT00940000157722.c	ENSGT00950000182838.C	ENSGT00390000003488.a.a
Black snub-nosed monkey	MODERN SPECIES	431	ENSRBIG00000029531	SQOR (ENSRBIG00000027944)	ENSRBIG00000016675	ENSRBIG00000030189	SEMA6D (ENSRBIG00000044260)	SLC24A5 (ENSRBIG00000035384)	MYEF2 (ENSRBIG00000037503)	CTXN2 (ENSRBIG00000027305)	SLC12A1 (ENSRBIG00000032330)	DUT (ENSRBIG00000022908)	FBN1 (ENSRBIG00000044019)	CEP152 (ENSRBIG00000028398)	SHC4 (ENSRBIG00000031241)	SECISBP2L (ENSRBIG00000030953)	COPS2 (ENSRBIG00000039767)	ENSRBIG00000033524 #22	ENSRBIG00000029568
Golden snub-nosed monkey	MODERN SPECIES	3108															COPS2 (ENSRROG00000041296)	ENSRROG00000009461 #22	ENSRROG00000035058	FGF7 (ENSRROG00000032138)	FAM227B (ENSRROG00000010536)	DTWD1 (ENSRROG00000003611)	ENSRROG00000045562	ATP8B4 (ENSRROG00000041373)	SLC27A2 (ENSRROG00000043255)	HDC (ENSRROG00000031354)	GABPB1 (ENSRROG00000018680)	USP8 (ENSRROG00000032034)	USP50 (ENSRROG00000034198)	TRPM7 (ENSRROG00000032172)	SPPL2A (ENSRROG00000040385)	ENSRROG00000032221	AP4E1 (ENSRROG00000040786)
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00390000011962	ENSGT00390000009002	ENSGT00940000157702	ENSGT00940000160138	ENSGT00940000160314	ENSGT00390000003140.A	ENSGT00940000158543	ENSGT00920000149161.f	ENSGT00940000157761	ENSGT00900000143593	ENSGT00620000089392	ENSGT00910000147429	ENSGT00940000160553	ENSGT00390000015663	ENSGT00390000016470.c.g	ENSGT00390000001627.f.a.a.b #22	ENSGT00940000154611	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000162785	ENSGT00550000074794	ENSGT00550000074878.`b.a.a.b	ENSGT00390000015127	ENSGT00390000002560	ENSGT01060000248544.a.a.b.a.b
Rhinopithecus	ANCESTRAL SPECIES	36	ENSGT00940000154079.a	ENSGT00940000154686.g.a	ENSGT00390000011962	ENSGT00390000009002	ENSGT00940000157702	ENSGT00940000160138	ENSGT00940000160314	ENSGT00390000003140.A	ENSGT00940000158543	ENSGT00920000149161.f	ENSGT00940000157761	ENSGT00620000089392	ENSGT00940000160553	ENSGT00390000015663	ENSGT00390000016470.c.g	ENSGT00390000001627.f.a.a.b #22	ENSGT00940000154611	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000162785	ENSGT00550000074794	ENSGT00550000074878.`b.a.a.b	ENSGT00390000015127	ENSGT00390000002560	ENSGT01060000248544.a.a.b.a.b
Golden snub-nosed monkey	MODERN SPECIES	1320							BRINP2 (ENSRROG00000044264)	ASTN1 (ENSRROG00000045248)	PAPPA2 (ENSRROG00000039792)	COP1 (ENSRROG00000029518)	TNR (ENSRROG00000034065)	KIAA0040 (ENSRROG00000000839)	TNN (ENSRROG00000037108)	MRPS14 (ENSRROG00000044175)	ENSRROG00000032675	ENSRROG00000027571 #22	RABGAP1L (ENSRROG00000034920)	RC3H1 (ENSRROG00000036546)	SERPINC1 (ENSRROG00000036408)	ZBTB37 (ENSRROG00000030849)	DARS2 (ENSRROG00000028963)	CENPL (ENSRROG00000035037)	KLHL20 (ENSRROG00000039427)	TEX50 (ENSRROG00000044526)	ANKRD45 (ENSRROG00000039260)	SLC9C2 (ENSRROG00000044188)	PRDX6 (ENSRROG00000041053)	ENSRROG00000041585	TNFSF4 (ENSRROG00000039121)	TNFSF18 (ENSRROG00000039945)
Black snub-nosed monkey	MODERN SPECIES	198	AATF (ENSRBIG00000039099)	LHX1 (ENSRBIG00000008229)	ENSRBIG00000036146	MRM1 (ENSRBIG00000040494)	ENSRBIG00000001284	PIGW (ENSRBIG00000016056)	MYO19 (ENSRBIG00000043731)	ZNHIT3 (ENSRBIG00000028062)	CA4 (ENSRBIG00000036296)	ENSRBIG00000038426	TNR (ENSRBIG00000034829)	KIAA0040 (ENSRBIG00000030007)	TNN (ENSRBIG00000041977)	ENSRBIG00000038405	ENSRBIG00000040837	ENSRBIG00000038099 #22	RABGAP1L (ENSRBIG00000038738)	RC3H1 (ENSRBIG00000037743)	SERPINC1 (ENSRBIG00000034364)	ZBTB37 (ENSRBIG00000031998)	DARS2 (ENSRBIG00000039012)	CENPL (ENSRBIG00000033593)	KLHL20 (ENSRBIG00000033324)	TEX50 (ENSRBIG00000033315)	ANKRD45 (ENSRBIG00000026804)	SLC9C2 (ENSRBIG00000013387)	PRDX6 (ENSRBIG00000032688)	ENSRBIG00000035165	TNFSF4 (ENSRBIG00000033750)	TNFSF18 (ENSRBIG00000036864)	FASLG (ENSRBIG00000012010)
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00390000011962	ENSGT00390000009002	ENSGT00940000157702	ENSGT00940000160138	ENSGT00940000160314	ENSGT00390000003140.A	ENSGT00940000158543	ENSGT00920000149161.f	ENSGT00940000157761	ENSGT00900000143593	ENSGT00620000089392	ENSGT00910000147429	ENSGT00940000160553	ENSGT00390000015663	ENSGT00390000016470.c.g	ENSGT00390000001627.f.a.a.b #22	ENSGT00940000154611	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000162785	ENSGT00550000074794	ENSGT00550000074878.`b.a.a.b	ENSGT00390000015127	ENSGT00390000002560	ENSGT01060000248544.a.a.b.a.b
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000009002	ENSGT00940000157702	ENSGT00940000160138	ENSGT00940000160314	ENSGT00390000003140.A	ENSGT00940000154406.b.h	ENSGT00940000158543	ENSGT00920000149161.f	ENSGT00940000157761	ENSGT00900000143593	ENSGT00620000089392	ENSGT00910000147429	ENSGT00940000160553	ENSGT00390000015663	ENSGT00390000016470.c.g.a.a	ENSGT00390000001627.f.a.a.b #22	ENSGT00390000016470.c.g.b	ENSGT00940000154611	ENSGT00390000016988.a.a.a.b.a.b.hb	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000162785	ENSGT00550000074794	ENSGT00550000074878.`b.a.a.b	ENSGT00390000015127
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000009002	ENSGT00940000157702	ENSGT00940000160138	ENSGT00940000160314	ENSGT00390000003140.A	ENSGT00940000154406.b.h	ENSGT00940000158543	ENSGT00920000149161.f	ENSGT00940000157761	ENSGT00900000143593	ENSGT00620000089392	ENSGT00910000147429	ENSGT00940000160553	ENSGT00390000015663	ENSGT00390000016470.c.g.a.a	ENSGT00390000001627.f.a.a.b #22	ENSGT00390000016470.c.g.b	ENSGT00940000154611	ENSGT00390000016988.a.a.a.b.a.b.hb	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00390000008829	ENSGT00520000059630	ENSGT00940000162785	ENSGT00550000074794	ENSGT00550000074878.`b.a.a.b	ENSGT00390000015127
Cercopithecinae_d	ANCESTRAL SPECIES	71	ENSGT00390000009002	ENSGT00940000157702	ENSGT00940000160138	ENSGT00940000160314	ENSGT00390000003140.A	ENSGT00940000154406.b.h	ENSGT00940000158543	ENSGT00920000149161.f	ENSGT00940000157761	ENSGT00900000143593	ENSGT00620000089392	ENSGT00910000147429	ENSGT00940000160553	ENSGT00390000015663	ENSGT00390000016470.c.g.a.a	ENSGT00390000001627.f.a.a.b #22	ENSGT00940000154611	ENSGT00390000016988.a.a.a.b.a.b.hb	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000162785	ENSGT00550000074794	ENSGT00550000074878.`b.a.a.b	ENSGT00390000015127	ENSGT00390000002560
Sooty mangabey	MODERN SPECIES	263								COP1 (ENSCATG00000017809)	TNR (ENSCATG00000036748)	ENSCATG00000023032	KIAA0040 (ENSCATG00000022389)	ENSCATG00000023358	TNN (ENSCATG00000029494)	MRPS14 (ENSCATG00000037150)	ENSCATG00000036153	ENSCATG00000029395 #22	RABGAP1L (ENSCATG00000045078)	ENSCATG00000016089	RC3H1 (ENSCATG00000033497)	SERPINC1 (ENSCATG00000034060)	ZBTB37 (ENSCATG00000040638)	DARS2 (ENSCATG00000032831)	CENPL (ENSCATG00000042726)	KLHL20 (ENSCATG00000032560)	TEX50 (ENSCATG00000033315)	ANKRD45 (ENSCATG00000044355)	SLC9C2 (ENSCATG00000040814)	PRDX6 (ENSCATG00000035802)	ENSCATG00000036351	TNFSF4 (ENSCATG00000037352)	TNFSF18 (ENSCATG00000007921)
Drill	MODERN SPECIES	822	CLEC20A (ENSMLEG00000032623)	RASAL2 (ENSMLEG00000042727)	SEC16B (ENSMLEG00000043514)	BRINP2 (ENSMLEG00000027129)	ASTN1 (ENSMLEG00000026572)	ENSMLEG00000012007	PAPPA2 (ENSMLEG00000040002)	COP1 (ENSMLEG00000040845)	TNR (ENSMLEG00000039790)	ENSMLEG00000000609	KIAA0040 (ENSMLEG00000027475)	ENSMLEG00000032807	TNN (ENSMLEG00000031845)	MRPS14 (ENSMLEG00000036873)	ENSMLEG00000035889	ENSMLEG00000035807 #22	RABGAP1L (ENSMLEG00000044070)	ENSMLEG00000031610	RC3H1 (ENSMLEG00000037455)	SERPINC1 (ENSMLEG00000035824)	ZBTB37 (ENSMLEG00000015748)	DARS2 (ENSMLEG00000044248)	CENPL (ENSMLEG00000025706)	KLHL20 (ENSMLEG00000007315)
Macaca	ANCESTRAL SPECIES		ENSGT00390000009002	ENSGT00940000157702	ENSGT00940000160138	ENSGT00940000160314	ENSGT00390000003140.A	ENSGT00940000154406.b.h	ENSGT00940000158543	ENSGT00920000149161.f	ENSGT00940000157761	ENSGT00900000143593	ENSGT00620000089392	ENSGT00910000147429	ENSGT00940000160553	ENSGT00390000015663	ENSGT00390000016470.c.g.a.a	ENSGT00390000001627.f.a.a.b #22	ENSGT00390000016470.c.g.a.b	ENSGT00940000154611	ENSGT00390000016988.a.a.a.b.a.b.hb	ENSGT00940000157143	ENSGT00940000157967	ENSGT00940000159554	ENSGT01030000234618.B	ENSGT00390000013877	ENSGT00940000155161	ENSGT00520000059630	ENSGT00390000008829	ENSGT00940000162785	ENSGT00550000074794	ENSGT00550000074878.`b.a.a.b	ENSGT00390000015127
Pig-tailed macaque	MODERN SPECIES	113	TEX35 (ENSMNEG00000027948)	CLEC20A (ENSMNEG00000035294)	RASAL2 (ENSMNEG00000034352)	SEC16B (ENSMNEG00000040574)	BRINP2 (ENSMNEG00000000003)	ASTN1 (ENSMNEG00000042291)	PAPPA2 (ENSMNEG00000030146)	COP1 (ENSMNEG00000041745)	TNR (ENSMNEG00000045078)	ENSMNEG00000027734	KIAA0040 (ENSMNEG00000005958)	ENSMNEG00000043122	TNN (ENSMNEG00000044188)	MRPS14 (ENSMNEG00000045113)	ENSMNEG00000032484	ENSMNEG00000038604 #22	RABGAP1L (ENSMNEG00000034574)	ENSMNEG00000030536	RC3H1 (ENSMNEG00000035968)	SERPINC1 (ENSMNEG00000008415)	ZBTB37 (ENSMNEG00000044739)	DARS2 (ENSMNEG00000045415)	CENPL (ENSMNEG00000033819)	KLHL20 (ENSMNEG00000043461)	TEX50 (ENSMNEG00000043152)	ANKRD45 (ENSMNEG00000038080)	SLC9C2 (ENSMNEG00000044915)	PRDX6 (ENSMNEG00000009949)	ENSMNEG00000038643	TNFSF4 (ENSMNEG00000035556)	TNFSF18 (ENSMNEG00000032674)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792	ENSGT00470000042284
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00420000029746.e.b	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000001627.f.a.b #22	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00420000029746.e.b	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792	ENSGT00470000042284
Cercopithecinae_d	ANCESTRAL SPECIES	52	ENSGT00940000160677	ENSGT00940000156210	ENSGT00940000156519.l	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000001627.f.a.b #22	ENSGT00390000004487	ENSGT00730000111139	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00420000029746.e.b	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792	ENSGT00470000042284
Sooty mangabey	MODERN SPECIES	424	SCN5A (ENSCATG00000002865)	EXOG (ENSCATG00000017315)	ACVR2B (ENSCATG00000037591)	ENSCATG00000025186	XYLB (ENSCATG00000038970)	SLC22A14 (ENSCATG00000035044)	SLC22A13 (ENSCATG00000042015)	OXSR1 (ENSCATG00000015484)	MYD88 (ENSCATG00000044210)	ACAA1 (ENSCATG00000032826)	DLEC1 (ENSCATG00000040608)	PLCD1 (ENSCATG00000035843)	VILL (ENSCATG00000009166)	CTDSPL (ENSCATG00000044659)	ITGA9 (ENSCATG00000029950)	ENSCATG00000045299 #22	ENSCATG00000045335	GOLGA4 (ENSCATG00000033265)	LRRFIP2 (ENSCATG00000043657)	ENSCATG00000036224	MLH1 (ENSCATG00000040935)	EPM2AIP1 (ENSCATG00000015693)	ENSCATG00000032441	TRANK1 (ENSCATG00000042564)	DCLK3 (ENSCATG00000040391)	ENSCATG00000040223	HRG (ENSCATG00000040673)	FETUB (ENSCATG00000045343)	AHSG (ENSCATG00000033286)	DNAJB11 (ENSCATG00000038172)	TBCCD1 (ENSCATG00000044408)
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b #22	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00910000147786	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00420000029746.e.b	ENSGT00950000182930.A.a	ENSGT00950000182930.A.b	ENSGT00950000182930.C	ENSGT00940000155792
Pig-tailed macaque	MODERN SPECIES	563	SCN10A (ENSMNEG00000031508)	SCN5A (ENSMNEG00000020729)	EXOG (ENSMNEG00000023586)	ACVR2B (ENSMNEG00000033690)	XYLB (ENSMNEG00000037396)	SLC22A14 (ENSMNEG00000042853)	SLC22A13 (ENSMNEG00000037730)	OXSR1 (ENSMNEG00000037482)	ENSMNEG00000003226	MYD88 (ENSMNEG00000039423)	ACAA1 (ENSMNEG00000027170)	DLEC1 (ENSMNEG00000041215)	PLCD1 (ENSMNEG00000040817)	VILL (ENSMNEG00000038389)	CTDSPL (ENSMNEG00000031966)	ENSMNEG00000033365 #22	ITGA9 (ENSMNEG00000045038)	ENSMNEG00000033582	GOLGA4 (ENSMNEG00000028430)	ENSMNEG00000017463	LRRFIP2 (ENSMNEG00000044558)	MLH1 (ENSMNEG00000045140)	EPM2AIP1 (ENSMNEG00000026385)	ENSMNEG00000037507	TRANK1 (ENSMNEG00000033902)	DCLK3 (ENSMNEG00000037509)	ENSMNEG00000035558	HRG (ENSMNEG00000037511)	FETUB (ENSMNEG00000008233)	AHSG (ENSMNEG00000006207)	DNAJB11 (ENSMNEG00000034853)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000001627.f.b #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000001627.f.b #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00390000001627.f.b #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000001627.f.b #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00390000001627.f.b #22
Pan	ANCESTRAL SPECIES	13	ENSGT00730000110871.a.b	ENSGT00930000151026.e.a	ENSGT00940000161427	ENSGT00530000063721.A	ENSGT00940000157621	ENSGT00390000018554	ENSGT00550000075032	ENSGT00390000004541.c.b	ENSGT00730000111097.f.a.b.b.a	ENSGT00940000157957	ENSGT00390000013973.A.a.d.a	ENSGT01100000263551.b.b.b	ENSGT00390000003442	ENSGT00940000155380	ENSGT00950000182891.a.a.b.a.a.b	ENSGT00390000001627.f.b #22	ENSGT00940000159917	ENSGT01100000263525.b.b.b	ENSGT01100000263525.b.b.a	ENSGT00940000162637	ENSGT00940000155639	ENSGT00390000004037	ENSGT00910000147396	ENSGT00390000005672.a.b	ENSGT00950000183173.P	ENSGT00940000155538.ab	ENSGT00390000008932.c.a.b	ENSGT00390000008932.c.b	ENSGT00390000008932.c.a.a	ENSGT00940000158874	ENSGT01030000234646.B.a.a.a.b
Chimpanzee	MODERN SPECIES	20	AKAP9 (ENSPTRG00000019389)	CYP51A1 (ENSPTRG00000019391)	LRRD1 (ENSPTRG00000041391)	KRIT1 (ENSPTRG00000019393)	ANKIB1 (ENSPTRG00000019394)	GATAD1 (ENSPTRG00000019395)	PEX1 (ENSPTRG00000019396)	ENSPTRG00000043160	FAM133B (ENSPTRG00000045978)	CDK6 (ENSPTRG00000019400)	SAMD9 (ENSPTRG00000028504)	HEPACAM2 (ENSPTRG00000019402)	VPS50 (ENSPTRG00000019403)	CALCR (ENSPTRG00000019404)	ENSPTRG00000043809	ENSPTRG00000050332 #22	TFPI2 (ENSPTRG00000019405)	GNGT1 (ENSPTRG00000019406)	GNG11 (ENSPTRG00000019407)	BET1 (ENSPTRG00000052163)	COL1A2 (ENSPTRG00000019409)	CASD1 (ENSPTRG00000019410)	ENSPTRG00000048456	SGCE (ENSPTRG00000019411)	PEG10 (ENSPTRG00000023648)	ENSPTRG00000045048	PPP1R9A (ENSPTRG00000047956)	PON1 (ENSPTRG00000019417)	PON3 (ENSPTRG00000049985)	PON2 (ENSPTRG00000019419)	ASB4 (ENSPTRG00000019420)
Bonobo	MODERN SPECIES	20	CDK14 (ENSPPAG00000042761)	MTERF1 (ENSPPAG00000027361)	AKAP9 (ENSPPAG00000035764)	CYP51A1 (ENSPPAG00000040915)	LRRD1 (ENSPPAG00000014062)	KRIT1 (ENSPPAG00000027231)	ANKIB1 (ENSPPAG00000030968)	PEX1 (ENSPPAG00000041612)	RBM48 (ENSPPAG00000038032)	ENSPPAG00000038105	ENSPPAG00000034434	ENSPPAG00000037081	VPS50 (ENSPPAG00000043615)	CALCR (ENSPPAG00000025678)	ENSPPAG00000007866	ENSPPAG00000034024 #22	TFPI2 (ENSPPAG00000027780)	GNGT1 (ENSPPAG00000027641)	GNG11 (ENSPPAG00000040958)	BET1 (ENSPPAG00000042715)	COL1A2 (ENSPPAG00000042352)	CASD1 (ENSPPAG00000042059)	ENSPPAG00000040463	ENSPPAG00000041811	PEG10 (ENSPPAG00000030053)	PPP1R9A (ENSPPAG00000041301)	PON1 (ENSPPAG00000035549)	PON3 (ENSPPAG00000032766)	PON2 (ENSPPAG00000028759)	ASB4 (ENSPPAG00000042126)	PDK4 (ENSPPAG00000027188)
Gorilla	MODERN SPECIES	20	LRRD1 (ENSGGOG00000011266)	KRIT1 (ENSGGOG00000001906)	ANKIB1 (ENSGGOG00000006851)	ENSGGOG00000038174	GATAD1 (ENSGGOG00000023375)	PEX1 (ENSGGOG00000005076)	RBM48 (ENSGGOG00000041453)	ENSGGOG00000041366	FAM133B (ENSGGOG00000044152)	CDK6 (ENSGGOG00000025851)	SAMD9 (ENSGGOG00000026836)	HEPACAM2 (ENSGGOG00000002483)	VPS50 (ENSGGOG00000022699)	CALCR (ENSGGOG00000011549)	ENSGGOG00000022478	ENSGGOG00000026388 #22	TFPI2 (ENSGGOG00000004510)	GNGT1 (ENSGGOG00000015062)	GNG11 (ENSGGOG00000014922)	BET1 (ENSGGOG00000002176)	COL1A2 (ENSGGOG00000006024)	ENSGGOG00000042812	CASD1 (ENSGGOG00000013491)	SGCE (ENSGGOG00000003172)	PEG10 (ENSGGOG00000040792)	ENSGGOG00000028270	PPP1R9A (ENSGGOG00000040320)	PON1 (ENSGGOG00000004746)	PON3 (ENSGGOG00000013258)	ENSGGOG00000025353	ENSGGOG00000022016
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000001627.f.b #22
Rhinopithecus	ANCESTRAL SPECIES	515																ENSGT00390000001627.f.b #22	ENSGT00940000159917	ENSGT01100000263525.b.b.b	ENSGT01100000263525.b.b.a	ENSGT00940000162637	ENSGT00940000155639	ENSGT00390000004037	ENSGT00390000005672.a.b	ENSGT00950000183173.P
Black snub-nosed monkey	MODERN SPECIES	1734																ENSRBIG00000039036 #22	TFPI2 (ENSRBIG00000038616)	GNG11 (ENSRBIG00000033832)	BET1 (ENSRBIG00000041820)	ENSRBIG00000033510	COL1A2 (ENSRBIG00000012419)	CASD1 (ENSRBIG00000044797)	SGCE (ENSRBIG00000034473)	PEG10 (ENSRBIG00000013492)
Golden snub-nosed monkey	MODERN SPECIES	2748																ENSRROG00000029274 #22	TFPI2 (ENSRROG00000042216)	GNGT1 (ENSRROG00000009150)	GNG11 (ENSRROG00000042677)	BET1 (ENSRROG00000034169)	COL1A2 (ENSRROG00000044053)	CASD1 (ENSRROG00000029922)	SGCE (ENSRROG00000006045)	PEG10 (ENSRROG00000035106)
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00890000139531	ENSGT00390000012040	ENSGT00510000047893	ENSGT00940000156958	ENSGT00390000009258	ENSGT00940000153342.b.w	ENSGT00940000157680	ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00940000157464	ENSGT00910000146652	ENSGT00940000156644	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00390000001627.f #22	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT01100000263504.a.a.yb.n	ENSGT00530000063402.b	ENSGT00390000010056	ENSGT00950000183044.a.a.a.c	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b	ENSGT00940000157376
Cebidae	ANCESTRAL SPECIES	23	ENSGT00940000158966	ENSGT00890000139531	ENSGT00390000012040	ENSGT00510000047893	ENSGT00940000156958	ENSGT00390000009258	ENSGT00940000153342.b.w	ENSGT00940000157680	ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00390000001627.f #22	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT01100000263504.a.a.yb.n	ENSGT00530000063402.b	ENSGT00390000010056.k	ENSGT00950000183044.a.a.a.c	ENSGT00390000010056.l	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00940000158966	ENSGT00890000139531	ENSGT00390000012040	ENSGT00510000047893	ENSGT00940000156958	ENSGT00390000009258	ENSGT00940000153342.b.w	ENSGT00940000157680	ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00940000157464	ENSGT00940000156644	ENSGT01030000234517.H.b	ENSGT00940000156810	ENSGT00390000001627.f #22	ENSGT00940000157923	ENSGT00940000156764.a	ENSGT00390000008003	ENSGT00940000156058	ENSGT00390000003188	ENSGT00940000162190	ENSGT00530000063651.a	ENSGT01100000263504.a.a.yb.n	ENSGT00530000063402.b	ENSGT00390000010056.k	ENSGT00950000183044.a.a.a.c	ENSGT00390000010056.l	ENSGT00940000159576	ENSGT00390000002210.d	ENSGT00390000018505.b
Capuchin	MODERN SPECIES	42	AGT (ENSCCAG00000008245)	COG2 (ENSCCAG00000027158)	PGBD5 (ENSCCAG00000020494)	GALNT2 (ENSCCAG00000037370)	ENSCCAG00000016358	URB2 (ENSCCAG00000023932)	TAF5L (ENSCCAG00000027314)	ABCB10 (ENSCCAG00000028677)	NUP133 (ENSCCAG00000030378)	ACTA1 (ENSCCAG00000035682)	CCSAP (ENSCCAG00000024046)	RAB4A (ENSCCAG00000024652)	RHOU (ENSCCAG00000011687)	CDC42BPA (ENSCCAG00000037751)	COQ8A (ENSCCAG00000028650)	ENSCCAG00000037794 #22	PSEN2 (ENSCCAG00000037653)	ENSCCAG00000035298	ITPKB (ENSCCAG00000017443)	STUM (ENSCCAG00000027365)	PARP1 (ENSCCAG00000033484)	LIN9 (ENSCCAG00000024893)	MIXL1 (ENSCCAG00000030603)	ACBD3 (ENSCCAG00000029038)	ENSCCAG00000021678	SDE2 (ENSCCAG00000033106)	ENSCCAG00000024966	PYCR2 (ENSCCAG00000029202)	ENSCCAG00000030395	TMEM63A (ENSCCAG00000022581)	EPHX1 (ENSCCAG00000024699)
Mas night monkey	MODERN SPECIES	958	ENSANAG00000024312	PGBD5 (ENSANAG00000037429)	GALNT2 (ENSANAG00000023609)	URB2 (ENSANAG00000033963)	TAF5L (ENSANAG00000030674)	ABCB10 (ENSANAG00000028541)	NUP133 (ENSANAG00000031425)	ACTA1 (ENSANAG00000033052)	CCSAP (ENSANAG00000002364)	RAB4A (ENSANAG00000032124)	ENSANAG00000020122	RHOU (ENSANAG00000023279)	ENSANAG00000028192	CDC42BPA (ENSANAG00000030280)	COQ8A (ENSANAG00000027573)	ENSANAG00000020132 #22	PSEN2 (ENSANAG00000028143)	ITPKB (ENSANAG00000024650)	STUM (ENSANAG00000027408)	PARP1 (ENSANAG00000032699)	LIN9 (ENSANAG00000004587)	MIXL1 (ENSANAG00000029392)	ACBD3 (ENSANAG00000034586)	ENSANAG00000017653	ENSANAG00000022092	SDE2 (ENSANAG00000028299)	ENSANAG00000030058	PYCR2 (ENSANAG00000027686)	ENSANAG00000029521	TMEM63A (ENSANAG00000020164)	EPHX1 (ENSANAG00000027514)
Tarsier	MODERN SPECIES	5123																NDUFAF4 (ENSTSYG00000011256) #22
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00390000000673.b.v.a.a	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Mouse lemur	MODERN SPECIES	28	ENSMICG00000006313	ASCC3 (ENSMICG00000008861) #7	SIM1 (ENSMICG00000008851) #8	MCHR2 (ENSMICG00000047626) #9	PRDM13 (ENSMICG00000032322) #10	ENSMICG00000001092 #11	TSTD3 (ENSMICG00000037658)	USP45 (ENSMICG00000013266) #13	PNISR (ENSMICG00000027275) #14	COQ3 (ENSMICG00000006818) #15	FAXC (ENSMICG00000006809) #16	FBXL4 (ENSMICG00000038579) #17	MMS22L (ENSMICG00000015759) #19	KLHL32 (ENSMICG00000015742) #21	ENSMICG00000016773	NDUFAF4 (ENSMICG00000043550) #22	GPR63 (ENSMICG00000048052) #23	FHL5 (ENSMICG00000009176) #24	UFL1 (ENSMICG00000009169) #25	FUT9 (ENSMICG00000048006) #26	MANEA (ENSMICG00000003434) #27	ENSMICG00000037653	EPHA7 (ENSMICG00000016493) #28	ENSMICG00000046432	MAP3K7 (ENSMICG00000002723) #29	ENSMICG00000027444	BACH2 (ENSMICG00000033104) #30	GJA10 (ENSMICG00000045195) #31	CASP8AP2 (ENSMICG00000032939) #33	MDN1 (ENSMICG00000012232) #34	LYRM2 (ENSMICG00000026997) #35
Lemuriformes_a	ANCESTRAL SPECIES	176	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164932	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28
Greater bamboo lemur	MODERN SPECIES	577								CAVIN2 (ENSPSMG00000009231)	NABP1 (ENSPSMG00000009215)	MYO1B (ENSPSMG00000008903)	ENSPSMG00000008499	STAT4 (ENSPSMG00000008480)	STAT1 (ENSPSMG00000008381)	GLS (ENSPSMG00000008153)	ENSPSMG00000008003 #21	NDUFAF4 (ENSPSMG00000007981) #22	ENSPSMG00000007971
Coquerels sifaka	MODERN SPECIES	877	NCSTN (ENSPCOG00000003818)	NHLH1 (ENSPCOG00000008958)	ENSPCOG00000022080 #7	SIM1 (ENSPCOG00000026795) #8	MCHR2 (ENSPCOG00000016672) #9	PRDM13 (ENSPCOG00000017811) #10	CCNC (ENSPCOG00000024011) #11	TSTD3 (ENSPCOG00000027118)	USP45 (ENSPCOG00000027464) #13	PNISR (ENSPCOG00000025505) #14	COQ3 (ENSPCOG00000005473) #15	FAXC (ENSPCOG00000021316) #16	FBXL4 (ENSPCOG00000024843) #17	MMS22L (ENSPCOG00000014155) #19	KLHL32 (ENSPCOG00000024439) #21	NDUFAF4 (ENSPCOG00000023074) #22	GPR63 (ENSPCOG00000026214) #23	FHL5 (ENSPCOG00000017782) #24	UFL1 (ENSPCOG00000015927) #25	ENSPCOG00000014896	FUT9 (ENSPCOG00000002370) #26
Bushbaby	MODERN SPECIES	247	SIM1 (ENSOGAG00000009865) #8	ENSOGAG00000027279	MCHR2 (ENSOGAG00000008232) #9	PRDM13 (ENSOGAG00000031927) #10	CCNC (ENSOGAG00000001116) #11	ENSOGAG00000025707 #12	USP45 (ENSOGAG00000001114) #13	ENSOGAG00000015143 #14	COQ3 (ENSOGAG00000015139) #15	FAXC (ENSOGAG00000015137) #16	FBXL4 (ENSOGAG00000009292) #17	POU3F2 (ENSOGAG00000024248) #18	ENSOGAG00000026283	MMS22L (ENSOGAG00000004316) #19	KLHL32 (ENSOGAG00000004315) #21	NDUFAF4 (ENSOGAG00000004311) #22	GPR63 (ENSOGAG00000031802) #23	FHL5 (ENSOGAG00000016431) #24	UFL1 (ENSOGAG00000004124) #25	ENSOGAG00000025302	FUT9 (ENSOGAG00000008092) #26
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Glires	ANCESTRAL SPECIES	5	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Hystricomorpha	ANCESTRAL SPECIES	41	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652.e
Hystricomorpha_a	ANCESTRAL SPECIES	46	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063.c.a #33	ENSGT00620000088063.d #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	41	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063.c.a #33	ENSGT00620000088063.d #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Long-tailed chinchilla	MODERN SPECIES	118	GRIK2 (ENSCLAG00000011506)	ASCC3 (ENSCLAG00000009794) #7	ENSCLAG00000014247	SIM1 (ENSCLAG00000016085) #8	PRDM13 (ENSCLAG00000010966) #10	CCNC (ENSCLAG00000011657) #11	ENSCLAG00000013053 #12	USP45 (ENSCLAG00000009237) #13	PNISR (ENSCLAG00000013308) #14	ENSCLAG00000014198 #15	FAXC (ENSCLAG00000011371) #16	FBXL4 (ENSCLAG00000011157) #17	POU3F2 (ENSCLAG00000009397) #18	MMS22L (ENSCLAG00000013729) #19	KLHL32 (ENSCLAG00000015943) #21	NDUFAF4 (ENSCLAG00000010804) #22	ENSCLAG00000017762	GPR63 (ENSCLAG00000010379) #23	FHL5 (ENSCLAG00000009307) #24	UFL1 (ENSCLAG00000014375) #25	FUT9 (ENSCLAG00000014616) #26	MANEA (ENSCLAG00000013546) #27	EPHA7 (ENSCLAG00000011201) #28	MAP3K7 (ENSCLAG00000011965) #29	BACH2 (ENSCLAG00000009099) #30	GJA10 (ENSCLAG00000017814) #31	ENSCLAG00000011885 #33	ENSCLAG00000014853 #33	MDN1 (ENSCLAG00000012965) #34	LYRM2 (ENSCLAG00000008898) #35	ANKRD6 (ENSCLAG00000011077) #36
Degu	MODERN SPECIES	63													MMS22L (ENSODEG00000007104) #19	KLHL32 (ENSODEG00000006069) #21	ENSODEG00000009448	NDUFAF4 (ENSODEG00000006828) #22	GPR63 (ENSODEG00000019348) #23	FHL5 (ENSODEG00000007253) #24	UFL1 (ENSODEG00000010483) #25	ENSODEG00000007485	FUT9 (ENSODEG00000019700) #26	ENSODEG00000010572	ENSODEG00000006941	MANEA (ENSODEG00000007043) #27	ENSODEG00000007719	ENSODEG00000019544	EPHA7 (ENSODEG00000006903) #28	MAP3K7 (ENSODEG00000007748) #29	ENSODEG00000019369 #30	GJA10 (ENSODEG00000007306) #31	ENSODEG00000007285 #33
Guinea pig	MODERN SPECIES	49	ENSCPOG00000033799	ENSCPOG00000008532	ENSCPOG00000011552	ENSCPOG00000040037	CCNC (ENSCPOG00000011792) #11	ENSCPOG00000032336 #12	USP45 (ENSCPOG00000010267) #13	PNISR (ENSCPOG00000033472) #14	COQ3 (ENSCPOG00000005688) #15	ENSCPOG00000026200	FAXC (ENSCPOG00000005687) #16	FBXL4 (ENSCPOG00000035819) #17	POU3F2 (ENSCPOG00000003168) #18	MMS22L (ENSCPOG00000039717) #19	KLHL32 (ENSCPOG00000011948) #21	NDUFAF4 (ENSCPOG00000031112) #22	GPR63 (ENSCPOG00000005050) #23	FHL5 (ENSCPOG00000002157) #24	UFL1 (ENSCPOG00000006956) #25	FUT9 (ENSCPOG00000003693) #26	MANEA (ENSCPOG00000035608) #27	EPHA7 (ENSCPOG00000003600) #28	MAP3K7 (ENSCPOG00000008242) #29	BACH2 (ENSCPOG00000030579) #30	GJA10 (ENSCPOG00000009251) #31	CASP8AP2 (ENSCPOG00000004110) #33	MDN1 (ENSCPOG00000015626) #34	LYRM2 (ENSCPOG00000037251) #35	ANKRD6 (ENSCPOG00000015623) #36	RRAGD (ENSCPOG00000004364) #37	ENSCPOG00000001432
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES		PRDM13 (ENSHGLG00000000835) #10	ENSHGLG00000001056	ENSHGLG00000000932 #11	ENSHGLG00000001555 #12	ENSHGLG00000046726	USP45 (ENSHGLG00000000362) #13	PNISR (ENSHGLG00000000441) #14	COQ3 (ENSHGLG00000045065) #15	ENSHGLG00000000521 #16	ENSHGLG00000042015 #16	FBXL4 (ENSHGLG00000000574) #17	POU3F2 (ENSHGLG00000019894) #18	MMS22L (ENSHGLG00000000469) #19	ENSHGLG00000040999	KLHL32 (ENSHGLG00000000940) #21	ENSHGLG00000047933 #22	GPR63 (ENSHGLG00000040998) #23	ENSHGLG00000001482	FHL5 (ENSHGLG00000046172) #24	ENSHGLG00000019575 #25	FUT9 (ENSHGLG00000043577) #26	ENSHGLG00000046415	ENSHGLG00000003809	ENSHGLG00000036171	MANEA (ENSHGLG00000000715) #27	ENSHGLG00000001408	ENSHGLG00000011705 #28	ENSHGLG00000020995	ENSHGLG00000013158	ENSHGLG00000045458	ENSHGLG00000038632
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000034482	GOLIM4 (ENSHGLG00000011338)	ENSHGLG00000011096	ENSHGLG00000041396	SERPINI1 (ENSHGLG00000019457)	ENSHGLG00000019167	ENSHGLG00000038572	WDR49 (ENSHGLG00000018741)	ENSHGLG00000048488	ENSHGLG00000019443	ENSHGLG00000019349	ENSHGLG00000034123	ENSHGLG00000014939	ENSHGLG00000048587	ENSHGLG00000014830	ENSHGLG00000050146 #22	ENSHGLG00000041962	ENSHGLG00000014682	SPTSSB (ENSHGLG00000014657)	ENSHGLG00000014716	ENSHGLG00000014451	ENSHGLG00000014349	ENSHGLG00000048724	ENSHGLG00000036112	ENSHGLG00000013450	ENSHGLG00000000663	ENSHGLG00000013672	ENSHGLG00000020760	ENSHGLG00000038492	KPNA4 (ENSHGLG00000012364)	ENSHGLG00000012199
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000011555	ENSHGLG00000009146	ENSHGLG00000013463	ENSHGLG00000007155	ENSHGLG00000006761	ENSHGLG00000014990	ENSHGLG00000046438	ENSHGLG00000044801	ENSHGLG00000013582	ENSHGLG00000011801	ENSHGLG00000006723	ENSHGLG00000045168	ENSHGLG00000017850	ENSHGLG00000047365	ENSHGLG00000013628	ENSHGLG00000034734 #22	ENSHGLG00000033660	ENSHGLG00000015265	ENSHGLG00000015184	ENSHGLG00000015688	BIRC6 (ENSHGLG00000006871)	ENSHGLG00000047170	YIPF4 (ENSHGLG00000008283)	ENSHGLG00000020491	ENSHGLG00000009004	NLRC4 (ENSHGLG00000005309)	SLC30A6 (ENSHGLG00000007024)	SPAST (ENSHGLG00000005503)	ENSHGLG00000033496	DPY30 (ENSHGLG00000013219)	ENSHGLG00000018935
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000036025	IL17RB (ENSHGLG00000033538)	ACTR8 (ENSHGLG00000002016)	SELK (ENSHGLG00000039969)	CACNA2D3 (ENSHGLG00000010346)	LRTM1 (ENSHGLG00000037277)	WNT5A (ENSHGLG00000007709)	ERC2 (ENSHGLG00000003759)	ENSHGLG00000038552	ENSHGLG00000021148	ENSHGLG00000002622	CCDC66 (ENSHGLG00000002221)	TASOR (ENSHGLG00000006020)	ARHGEF3 (ENSHGLG00000004164)	ENSHGLG00000004559	ENSHGLG00000048468 #22	IL17RD (ENSHGLG00000003939)	ENSHGLG00000003745	ENSHGLG00000036669
Naked mole-rat female	MODERN SPECIES	24	TEF (ENSHGLG00000050605)	ZC3H7B (ENSHGLG00000012263)	RANGAP1 (ENSHGLG00000015526)	CHADL (ENSHGLG00000018119)	L3MBTL2 (ENSHGLG00000018290)	EP300 (ENSHGLG00000015586)	RBX1 (ENSHGLG00000014822)	XPNPEP3 (ENSHGLG00000013429)	ENSHGLG00000013411	SLC25A17 (ENSHGLG00000013720)	MCHR1 (ENSHGLG00000005319) ##9	MRTFA (ENSHGLG00000009723)	SGSM3 (ENSHGLG00000018585)	ADSL (ENSHGLG00000016466)	ENSHGLG00000009306	ENSHGLG00000038998 #22	ENSHGLG00000042810	ENSHGLG00000018482	ENSHGLG00000049183	ENSHGLG00000017812	GRAP2 (ENSHGLG00000012328)	ENSHGLG00000016043	CACNA1I (ENSHGLG00000017516)	RPS19BP1 (ENSHGLG00000010403)	ATF4 (ENSHGLG00000011252)	ENSHGLG00000017939	ENSHGLG00000041878	ENSHGLG00000039337	MGAT3 (ENSHGLG00000012583)	TAB1 (ENSHGLG00000015491)	SYNGR1 (ENSHGLG00000044391)
Naked mole-rat female	MODERN SPECIES	11	GPR176 (ENSHGLG00000046525)	ENSHGLG00000050069	FSIP1 (ENSHGLG00000015365)	THBS1 (ENSHGLG00000016132)	ENSHGLG00000018013	ENSHGLG00000010006	ENSHGLG00000020525	ENSHGLG00000012540	RASGRP1 (ENSHGLG00000015594)	FAM98B (ENSHGLG00000034339)	SPRED1 (ENSHGLG00000049493)	ENSHGLG00000034326	ENSHGLG00000018548	ENSHGLG00000033453	ENSHGLG00000046519	ENSHGLG00000033130 #22	ENSHGLG00000015146	ENSHGLG00000012060	ENSHGLG00000044260	ZNF770 (ENSHGLG00000048525)	AQR (ENSHGLG00000013912)	ENSHGLG00000043341	ENSHGLG00000018281	ENSHGLG00000014742	ENSHGLG00000039929	ENSHGLG00000018587	ENSHGLG00000006535	SCG5 (ENSHGLG00000007916)	GREM1 (ENSHGLG00000005364)	ENSHGLG00000041336	FMN1 (ENSHGLG00000014841)
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719.t #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Marmotini	ANCESTRAL SPECIES	11	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719.t #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000167085	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37
Alpin marmot	MODERN SPECIES	2	ENSMMMG00000012023	ENSMMMG00000012017	ASCC3 (ENSMMMG00000011942) #7	SIM1 (ENSMMMG00000011921) #8	MCHR2 (ENSMMMG00000011867) #9	PRDM13 (ENSMMMG00000011858) #10	CCNC (ENSMMMG00000011675) #11	ENSMMMG00000011672	USP45 (ENSMMMG00000011597) #13	PNISR (ENSMMMG00000011582) #14	COQ3 (ENSMMMG00000011572) #15	FAXC (ENSMMMG00000011541) #16	FBXL4 (ENSMMMG00000011504) #17	MMS22L (ENSMMMG00000011340) #19	KLHL32 (ENSMMMG00000011140) #21	NDUFAF4 (ENSMMMG00000011131) #22	GPR63 (ENSMMMG00000011119) #23	FHL5 (ENSMMMG00000011104) #24	UFL1 (ENSMMMG00000011052) #25	ENSMMMG00000011040	FUT9 (ENSMMMG00000011034) #26	MANEA (ENSMMMG00000011013) #27	ENSMMMG00000011000	EPHA7 (ENSMMMG00000010889) #28	MAP3K7 (ENSMMMG00000010706) #29	BACH2 (ENSMMMG00000010682) #30	GJA10 (ENSMMMG00000010674) #31	CASP8AP2 (ENSMMMG00000010620) #33	ENSMMMG00000010615	MDN1 (ENSMMMG00000010037) #34	LYRM2 (ENSMMMG00000010017) #35
Marmotini_b	ANCESTRAL SPECIES	247														ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000167085	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28
Squirrel	MODERN SPECIES	299														MMS22L (ENSSTOG00000011557) #19	KLHL32 (ENSSTOG00000011539) #21	NDUFAF4 (ENSSTOG00000021441) #22	GPR63 (ENSSTOG00000025259) #23	FHL5 (ENSSTOG00000004610) #24	UFL1 (ENSSTOG00000004570) #25	FUT9 (ENSSTOG00000000275) #26	MANEA (ENSSTOG00000007797) #27
Arctic ground squirrel	MODERN SPECIES	108														MMS22L (ENSUPAG00010000905) #19	KLHL32 (ENSUPAG00010001018) #21	NDUFAF4 (ENSUPAG00010001153) #22	GPR63 (ENSUPAG00010001172) #23	FHL5 (ENSUPAG00010001189) #24	UFL1 (ENSUPAG00010001205) #25	ENSUPAG00010001260	FUT9 (ENSUPAG00010001268) #26	MANEA (ENSUPAG00010001275) #27	EPHA7 (ENSUPAG00010001281) #28	ENSUPAG00010001392
Eurasian red squirrel	MODERN SPECIES	16	MCHR2 (ENSSVLG00005009070) #9	PRDM13 (ENSSVLG00005009125) #10	ENSSVLG00005009236 #11	ENSSVLG00005009650 #12	ENSSVLG00005009671 #13	ENSSVLG00005009751 #13	PNISR (ENSSVLG00005009775) #14	ENSSVLG00005009809 #15	FAXC (ENSSVLG00005009848) #16	ENSSVLG00005009888	FBXL4 (ENSSVLG00005009914) #17	POU3F2 (ENSSVLG00005009952) #18	ENSSVLG00005009975	MMS22L (ENSSVLG00005010083) #19	KLHL32 (ENSSVLG00005010406) #21	NDUFAF4 (ENSSVLG00005010749) #22	GPR63 (ENSSVLG00005010801) #23	ENSSVLG00005010834	FHL5 (ENSSVLG00005010871) #24	UFL1 (ENSSVLG00005010923) #25	FUT9 (ENSSVLG00005010979) #26	MANEA (ENSSVLG00005011033) #27	ENSSVLG00005011073	ENSSVLG00005011109	ENSSVLG00005011149	EPHA7 (ENSSVLG00005011198) #28	MAP3K7 (ENSSVLG00005011461) #29	BACH2 (ENSSVLG00005011670) #30	GJA10 (ENSSVLG00005011729) #31	CASP8AP2 (ENSSVLG00005011773) #33	MDN1 (ENSSVLG00005011919) #34
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Muroidea	ANCESTRAL SPECIES	66				ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Cricetinae	ANCESTRAL SPECIES	31	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27
Golden Hamster	MODERN SPECIES	622	Ttpa (ENSMAUG00000017120)	Ggh (ENSMAUG00000018444)	Nkain3 (ENSMAUG00000020121)	ENSMAUG00000014284	Prdm13 (ENSMAUG00000017824) #10	Ccnc (ENSMAUG00000014657) #11	Tstd3 (ENSMAUG00000014500)	Usp45 (ENSMAUG00000019377) #13	Pnisr (ENSMAUG00000011897) #14	Coq3 (ENSMAUG00000013286) #15	Faxc (ENSMAUG00000012342) #16	Fbxl4 (ENSMAUG00000014115) #17	Pou3f2 (ENSMAUG00000010245) #18	Mms22l (ENSMAUG00000001695) #19	Klhl32 (ENSMAUG00000021567) #21	Ndufaf4 (ENSMAUG00000017624) #22	Gpr63 (ENSMAUG00000019007) #23	Fhl5 (ENSMAUG00000019342) #24	Fut9 (ENSMAUG00000018513) #26	Manea (ENSMAUG00000019845) #27
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001017157	Nkain3 (ENSCGRG00001016505)	Prdm13 (ENSCGRG00001023245) #10	Ccnc (ENSCGRG00001020846) #11	ENSCGRG00001020233 #12	Usp45 (ENSCGRG00001011712) #13	Pnisr (ENSCGRG00001014264) #14	Coq3 (ENSCGRG00001007261) #15	Faxc (ENSCGRG00001000779) #16	Fbxl4 (ENSCGRG00001015697) #17	Pou3f2 (ENSCGRG00001008214) #18	ENSCGRG00001007884	Mms22l (ENSCGRG00001017422) #19	Klhl32 (ENSCGRG00001019757) #21	ENSCGRG00001016066	Ndufaf4 (ENSCGRG00001015554) #22	Gpr63 (ENSCGRG00001006566) #23	ENSCGRG00001020246	Fhl5 (ENSCGRG00001016810) #24	Ufl1 (ENSCGRG00001007168) #25	ENSCGRG00001018796	FUT9 (ENSCGRG00001007342) #26	ENSCGRG00001016557	Manea (ENSCGRG00001013459) #27	ENSCGRG00001010511	ENSCGRG00001009500	Epha7 (ENSCGRG00001024038) #28	Map3k7 (ENSCGRG00001006542) #29	Bach2 (ENSCGRG00001022819) #30	Gja10 (ENSCGRG00001006501) #31	ENSCGRG00001015514 #33
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Prairie vole	MODERN SPECIES	355	Ggh (ENSMOCG00000010648)	Nkain3 (ENSMOCG00000014823)	ENSMOCG00000015828	Prdm13 (ENSMOCG00000005428) #10	Ccnc (ENSMOCG00000000268) #11	ENSMOCG00000006981 #12	Usp45 (ENSMOCG00000012767) #13	Pnisr (ENSMOCG00000010290) #14	Coq3 (ENSMOCG00000014486) #15	Faxc (ENSMOCG00000019894) #16	Fbxl4 (ENSMOCG00000018220) #17	Pou3f2 (ENSMOCG00000003520) #18	Mms22l (ENSMOCG00000016665) #19	Klhl32 (ENSMOCG00000020765) #21	ENSMOCG00000016823	Ndufaf4 (ENSMOCG00000001038) #22	Gpr63 (ENSMOCG00000022609) #23	Fhl5 (ENSMOCG00000012293) #24	Ufl1 (ENSMOCG00000019840) #25	Fut9 (ENSMOCG00000001401) #26	Manea (ENSMOCG00000019411) #27	ENSMOCG00000002513	Epha7 (ENSMOCG00000020214) #28	Map3k7 (ENSMOCG00000012453) #29	ENSMOCG00000001306 #30	Gja10 (ENSMOCG00000001726) #31	ENSMOCG00000017624 #33	Mdn1 (ENSMOCG00000008145) #34	Lyrm2 (ENSMOCG00000016199) #35	Ankrd6 (ENSMOCG00000009992) #36	Rragd (ENSMOCG00000013775) #37
Northern American deer mouse	MODERN SPECIES	11	Nkain3 (ENSPEMG00000000608)	ENSPEMG00000006880	ENSPEMG00000029781	Prdm13 (ENSPEMG00000000098) #10	Ccnc (ENSPEMG00000015952) #11	Tstd3 (ENSPEMG00000011487)	Usp45 (ENSPEMG00000006676) #13	ENSPEMG00000030192	Pnisr (ENSPEMG00000003524) #14	Coq3 (ENSPEMG00000002775) #15	Faxc (ENSPEMG00000000141) #16	Fbxl4 (ENSPEMG00000015634) #17	Pou3f2 (ENSPEMG00000002130) #18	Mms22l (ENSPEMG00000008908) #19	Klhl32 (ENSPEMG00000006572) #21	Ndufaf4 (ENSPEMG00000031258) #22	Gpr63 (ENSPEMG00000026056) #23	Fhl5 (ENSPEMG00000008773) #24	Ufl1 (ENSPEMG00000002974) #25	Fut9 (ENSPEMG00000028898) #26	Manea (ENSPEMG00000030628) #27	Epha7 (ENSPEMG00000020928) #28	ENSPEMG00000019312	Map3k7 (ENSPEMG00000012318) #29	Bach2 (ENSPEMG00000024668) #30	Gja10 (ENSPEMG00000015491) #31	Casp8ap2 (ENSPEMG00000030214) #33	Mdn1 (ENSPEMG00000012086) #34	ENSPEMG00000025961 #35	Ankrd6 (ENSPEMG00000017300) #36	Rragd (ENSPEMG00000009726) #37
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000002200.a.b	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Mus	ANCESTRAL SPECIES	3	ENSGT00390000002200.a.b	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000002200.a.b	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Ryukyu mouse	MODERN SPECIES	13	Atp6v0d2 (MGP_CAROLIEiJ_G0025839)	Ttpa (MGP_CAROLIEiJ_G0025840)	Ggh (MGP_CAROLIEiJ_G0025841)	Nkain3 (MGP_CAROLIEiJ_G0025842)	Prdm13 (MGP_CAROLIEiJ_G0025843) #10	Ccnc (MGP_CAROLIEiJ_G0025844) #11	Tstd3 (MGP_CAROLIEiJ_G0025845)	Usp45 (MGP_CAROLIEiJ_G0025846) #13	Pnisr (MGP_CAROLIEiJ_G0025847) #14	Coq3 (MGP_CAROLIEiJ_G0025848) #15	Faxc (MGP_CAROLIEiJ_G0025849) #16	Fbxl4 (MGP_CAROLIEiJ_G0025850) #17	Pou3f2 (MGP_CAROLIEiJ_G0025851) #18	Mms22l (MGP_CAROLIEiJ_G0025852) #19	Klhl32 (MGP_CAROLIEiJ_G0025853) #21	Ndufaf4 (MGP_CAROLIEiJ_G0025854) #22	Gpr63 (MGP_CAROLIEiJ_G0025855) #23	Fhl5 (MGP_CAROLIEiJ_G0025856) #24	Ufl1 (MGP_CAROLIEiJ_G0025857) #25	Fut9 (MGP_CAROLIEiJ_G0025858) #26	Manea (MGP_CAROLIEiJ_G0025859) #27	Epha7 (MGP_CAROLIEiJ_G0025860) #28	Map3k7 (MGP_CAROLIEiJ_G0025861) #29	Bach2 (MGP_CAROLIEiJ_G0025862) #30	Gja10 (MGP_CAROLIEiJ_G0025863) #31	Casp8ap2 (MGP_CAROLIEiJ_G0025864) #33	Mdn1 (MGP_CAROLIEiJ_G0025865) #34	Lyrm2 (MGP_CAROLIEiJ_G0025866) #35	Ankrd6 (MGP_CAROLIEiJ_G0025867) #36	Rragd (MGP_CAROLIEiJ_G0025868) #37	Ube2j1 (MGP_CAROLIEiJ_G0025869)
Mus_B	ANCESTRAL SPECIES	22	ENSGT00390000002200.a.b	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Mouse	MODERN SPECIES	13	Atp6v0d2 (ENSMUSG00000028238)	Ttpa (ENSMUSG00000073988)	Ggh (ENSMUSG00000073987)	Nkain3 (ENSMUSG00000055761)	Prdm13 (ENSMUSG00000040478) #10	Ccnc (ENSMUSG00000028252) #11	Tstd3 (ENSMUSG00000028251)	Usp45 (ENSMUSG00000040455) #13	Pnisr (ENSMUSG00000028248) #14	Coq3 (ENSMUSG00000028247) #15	Faxc (ENSMUSG00000028246) #16	Fbxl4 (ENSMUSG00000040410) #17	Pou3f2 (ENSMUSG00000095139) #18	Mms22l (ENSMUSG00000045751) #19	Klhl32 (ENSMUSG00000040387) #21	Ndufaf4 (ENSMUSG00000028261) #22	Gpr63 (ENSMUSG00000040372) #23	Fhl5 (ENSMUSG00000028259) #24	Ufl1 (ENSMUSG00000040359) #25	Fut9 (ENSMUSG00000055373) #26	Manea (ENSMUSG00000040520) #27	Epha7 (ENSMUSG00000028289) #28	Map3k7 (ENSMUSG00000028284) #29	Bach2 (ENSMUSG00000040270) #30	Gja10 (ENSMUSG00000051056) #31	Casp8ap2 (ENSMUSG00000028282) #33	Mdn1 (ENSMUSG00000058006) #34	Lyrm2 (ENSMUSG00000045854) #35	Ankrd6 (ENSMUSG00000040183) #36	Rragd (ENSMUSG00000028278) #37	Ube2j1 (ENSMUSG00000028277)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000002200.a.b	ENSGT00940000159203	ENSGT00490000043388.b.a	ENSGT00940000161484	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000164601	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Steppe mouse	MODERN SPECIES	2601												ENSMSIG00000020685	Mms22l (ENSMSIG00000020697) #19	ENSMSIG00000020835	Klhl32 (ENSMSIG00000020845) #21	Ndufaf4 (ENSMSIG00000020952) #22	ENSMSIG00000020962	Gpr63 (ENSMSIG00000020965) #23
Shrew mouse	MODERN SPECIES	14	Atp6v0d2 (MGP_PahariEiJ_G0023962)	Ttpa (MGP_PahariEiJ_G0023963)	Ggh (MGP_PahariEiJ_G0023964)	Nkain3 (MGP_PahariEiJ_G0023965)	Prdm13 (MGP_PahariEiJ_G0023966) #10	Ccnc (MGP_PahariEiJ_G0023967) #11	Tstd3 (MGP_PahariEiJ_G0023968)	Usp45 (MGP_PahariEiJ_G0023969) #13	Pnisr (MGP_PahariEiJ_G0023970) #14	Coq3 (MGP_PahariEiJ_G0023971) #15	Faxc (MGP_PahariEiJ_G0023972) #16	Fbxl4 (MGP_PahariEiJ_G0023973) #17	Pou3f2 (MGP_PahariEiJ_G0023974) #18	Mms22l (MGP_PahariEiJ_G0023975) #19	Klhl32 (MGP_PahariEiJ_G0023976) #21	Ndufaf4 (MGP_PahariEiJ_G0023977) #22	Gpr63 (MGP_PahariEiJ_G0023978) #23	Fhl5 (MGP_PahariEiJ_G0023979) #24	Ufl1 (MGP_PahariEiJ_G0023980) #25	Fut9 (MGP_PahariEiJ_G0023981) #26	Manea (MGP_PahariEiJ_G0023982) #27	Epha7 (MGP_PahariEiJ_G0023983) #28	Map3k7 (MGP_PahariEiJ_G0023984) #29	Bach2 (MGP_PahariEiJ_G0023985) #30	Gja10 (MGP_PahariEiJ_G0023986) #31	Casp8ap2 (MGP_PahariEiJ_G0023987) #33	Mdn1 (MGP_PahariEiJ_G0023988) #34	Lyrm2 (MGP_PahariEiJ_G0023989) #35	Ankrd6 (MGP_PahariEiJ_G0023990) #36	Rragd (MGP_PahariEiJ_G0023991) #37	Ube2j1 (MGP_PahariEiJ_G0023992)
Rat	MODERN SPECIES	15	Ttpa (ENSRNOG00000007139)	Ggh (ENSRNOG00000007351)	Nkain3 (ENSRNOG00000013085)	Prdm13 (ENSRNOG00000007683) #10	Ccnc (ENSRNOG00000007719) #11	Tstd3 (ENSRNOG00000028185)	Usp45 (ENSRNOG00000008688) #13	Pnisr (ENSRNOG00000008782) #14	Coq3 (ENSRNOG00000009974) #15	Faxc (ENSRNOG00000010106) #16	ENSRNOG00000071090	Fbxl4 (ENSRNOG00000005641) #17	Pou3f2 (ENSRNOG00000063836) #18	Mms22l (ENSRNOG00000006996) #19	Klhl32 (ENSRNOG00000007441) #21	Ndufaf4 (ENSRNOG00000007506) #22	ENSRNOG00000069171	Gpr63 (ENSRNOG00000007675) #23	Fhl5 (ENSRNOG00000007680) #24	Ufl1 (ENSRNOG00000007831) #25	AABR07047293.1 (ENSRNOG00000032078)	Fut9 (ENSRNOG00000070149) #26	Manea (ENSRNOG00000008626) #27	Slc25a36-ps1 (ENSRNOG00000064371)	Epha7 (ENSRNOG00000007030) #28	RGD1562265 (ENSRNOG00000069296)	Map3k7 (ENSRNOG00000005724) #29	Bach2 (ENSRNOG00000006170) #30	Gja10 (ENSRNOG00000006478) #31	Casp8ap2 (ENSRNOG00000006487) #33	Mdn1 (ENSRNOG00000047513) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	1069			ENSNGAG00000014317	Prdm13 (ENSNGAG00000012178) #10	Ccnc (ENSNGAG00000022635) #11	ENSNGAG00000021330 #12	Usp45 (ENSNGAG00000018552) #13	ENSNGAG00000016482 #14	ENSNGAG00000013839 #14	Coq3 (ENSNGAG00000018739) #15	Faxc (ENSNGAG00000018009) #16	Fbxl4 (ENSNGAG00000017437) #17	Pou3f2 (ENSNGAG00000004321) #18	Mms22l (ENSNGAG00000018175) #19	Klhl32 (ENSNGAG00000024219) #21	Ndufaf4 (ENSNGAG00000013127) #22	Gpr63 (ENSNGAG00000009957) #23	Fhl5 (ENSNGAG00000012510) #24	Ufl1 (ENSNGAG00000010553) #25	Fut9 (ENSNGAG00000009185) #26	ENSNGAG00000022801	Manea (ENSNGAG00000021225) #27
Lesser Egyptian jerboa	MODERN SPECIES	104												Mms22l (ENSJJAG00000009973) #19	ENSJJAG00000013259	Klhl32 (ENSJJAG00000022976) #21	ENSJJAG00000023258	Ndufaf4 (ENSJJAG00000023657) #22	Gpr63 (ENSJJAG00000013298) #23	Fhl5 (ENSJJAG00000000636) #24	Ufl1 (ENSJJAG00000006182) #25	ENSJJAG00000010016	ENSJJAG00000013253	Fut9 (ENSJJAG00000022594) #26	ENSJJAG00000023083	Manea (ENSJJAG00000023182) #27	ENSJJAG00000023315	ENSJJAG00000023379	Epha7 (ENSJJAG00000016879) #28	ENSJJAG00000017184	ENSJJAG00000017512	ENSJJAG00000017791	ENSJJAG00000017896
Kangaroo rat	MODERN SPECIES	381	Ascc3 (ENSDORG00000008572) #7	Sim1 (ENSDORG00000029337) #8	ENSDORG00000010276 #9	Prdm13 (ENSDORG00000026728) #10	ENSDORG00000008393 #11	Usp45 (ENSDORG00000009273) #13	ENSDORG00000003696 #14	ENSDORG00000029441 #14	ENSDORG00000023456 #15	Faxc (ENSDORG00000013228) #16	ENSDORG00000015241 #17	ENSDORG00000027306	ENSDORG00000024024	ENSDORG00000009188	Klhl32 (ENSDORG00000009187) #21	Ndufaf4 (ENSDORG00000024998) #22	Gpr63 (ENSDORG00000016013) #23
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00910000146889	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652	ENSGT00940000156864	ENSGT00940000158591
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	3	PRDM13 (ENSOCUG00000003216) #10	CCNC (ENSOCUG00000003309) #11	ENSOCUG00000022637 #12	USP45 (ENSOCUG00000009234) #13	ENSOCUG00000036568	PNISR (ENSOCUG00000000987) #14	COQ3 (ENSOCUG00000033837) #15	ENSOCUG00000031790	FAXC (ENSOCUG00000008298) #16	ENSOCUG00000027653	FBXL4 (ENSOCUG00000007892) #17	ENSOCUG00000001087	MMS22L (ENSOCUG00000013868) #19	ENSOCUG00000026430	KLHL32 (ENSOCUG00000013852) #21	ENSOCUG00000002152 #22	GPR63 (ENSOCUG00000016058) #23	FHL5 (ENSOCUG00000017742) #24	UFL1 (ENSOCUG00000002084) #25	ENSOCUG00000036471	FUT9 (ENSOCUG00000012458) #26	ENSOCUG00000029427 #27	ENSOCUG00000023745	ENSOCUG00000037906	EPHA7 (ENSOCUG00000000672) #28	ENSOCUG00000008851	MAP3K7 (ENSOCUG00000001698) #29	ENSOCUG00000039106	BACH2 (ENSOCUG00000004231) #30	GJA10 (ENSOCUG00000001746) #31	CASP8AP2 (ENSOCUG00000001742) #33
Rabbit	MODERN SPECIES	14	FCHSD1 (ENSOCUG00000002098)	ARAP3 (ENSOCUG00000009340)	PCDH1 (ENSOCUG00000016923)	DELE1 (ENSOCUG00000016933)	PCDH12 (ENSOCUG00000016941)	RNF14 (ENSOCUG00000016953)	GNPDA1 (ENSOCUG00000016963)	NDFIP1 (ENSOCUG00000023595)	SPRY4 (ENSOCUG00000003215)	FGF1 (ENSOCUG00000013987)	ENSOCUG00000021770	ARHGAP26 (ENSOCUG00000011665)	NR3C1 (ENSOCUG00000011676)	YIPF5 (ENSOCUG00000028126)	KCTD16 (ENSOCUG00000011159)	ENSOCUG00000023960 #22	ENSOCUG00000029156	GRXCR2 (ENSOCUG00000015661)	SH3RF2 (ENSOCUG00000015667)	PLAC8L1 (ENSOCUG00000015677)	LARS1 (ENSOCUG00000015684)	ENSOCUG00000033519	RBM27 (ENSOCUG00000000186)	ENSOCUG00000022425	TCERG1 (ENSOCUG00000006169)	GPR151 (ENSOCUG00000006177)	ENSOCUG00000021792	PPP2R2B (ENSOCUG00000006861)	STK32A (ENSOCUG00000003757)	DPYSL3 (ENSOCUG00000003766)	JAKMIP2 (ENSOCUG00000013606)
Pika	MODERN SPECIES	757														MMS22L (ENSOPRG00000017125) #19	KLHL32 (ENSOPRG00000017121) #21	NDUFAF4 (ENSOPRG00000017120) #22
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Afrotheria	ANCESTRAL SPECIES	13	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Tenrec	MODERN SPECIES	2234																NDUFAF4 (ENSETEG00000009293) #22
Afrotheria_a	ANCESTRAL SPECIES	13	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377 #7	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000155625 #11	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Elephant	MODERN SPECIES	1	ASCC3 (ENSLAFG00000011363) #7	ENSLAFG00000029874	SIM1 (ENSLAFG00000006594) #8	MCHR2 (ENSLAFG00000008248) #9	PRDM13 (ENSLAFG00000012439) #10	CCNC (ENSLAFG00000002112) #11	USP45 (ENSLAFG00000008357) #13	PNISR (ENSLAFG00000027683) #14	COQ3 (ENSLAFG00000006127) #15	FAXC (ENSLAFG00000007281) #16	FBXL4 (ENSLAFG00000005295) #17	ENSLAFG00000031052 #18	ENSLAFG00000026780	MMS22L (ENSLAFG00000005793) #19	KLHL32 (ENSLAFG00000005788) #21	NDUFAF4 (ENSLAFG00000009706) #22	GPR63 (ENSLAFG00000031026) #23	FHL5 (ENSLAFG00000018283) #24	UFL1 (ENSLAFG00000018276) #25	FUT9 (ENSLAFG00000030650) #26	ENSLAFG00000031712	MANEA (ENSLAFG00000016449) #27	EPHA7 (ENSLAFG00000018084) #28	MAP3K7 (ENSLAFG00000018639) #29	BACH2 (ENSLAFG00000013766) #30	GJA10 (ENSLAFG00000013764) #31	CASP8AP2 (ENSLAFG00000012427) #33	MDN1 (ENSLAFG00000010196) #34	LYRM2 (ENSLAFG00000010194) #35	ANKRD6 (ENSLAFG00000010187) #36	RRAGD (ENSLAFG00000005985) #37
Hyrax	MODERN SPECIES	1808																NDUFAF4 (ENSPCAG00000016550) #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00390000001627 #22
Sloth	MODERN SPECIES	13481																NDUFAF4 (ENSCHOG00000005145) #22
Armadillo	MODERN SPECIES	2204															ENSDNOG00000037420	NDUFAF4 (ENSDNOG00000002796) #22
Platypus	MODERN SPECIES	10	DOP1A (ENSOANG00000001279)	UBE3D (ENSOANG00000001282)	ENSOANG00000037944	IBTK (ENSOANG00000001284)	TENT5A (ENSOANG00000050641)	BCKDHB (ENSOANG00000001286)	TTK (ENSOANG00000001287)	ELOVL4 (ENSOANG00000045930)	COL12A1 (ENSOANG00000001292)	COX7A2 (ENSOANG00000037756)	TMEM30A (ENSOANG00000040334)	FILIP1 (ENSOANG00000001298)	FBXL4 (ENSOANG00000001299) #17	ENSOANG00000040274	MMS22L (ENSOANG00000001301) #19	ENSOANG00000050615 #22	GPR63 (ENSOANG00000040527) #23	FHL5 (ENSOANG00000001302) #24	UFL1 (ENSOANG00000001306) #25	ENSOANG00000037045	ENSOANG00000048225	PHIP (ENSOANG00000000948)	ENSOANG00000028680	ENSOANG00000046953	MYO6 (ENSOANG00000000943)	ENSOANG00000038139	ENSOANG00000000941	METTL24 (ENSOANG00000043034)	CDC40 (ENSOANG00000000939)	WASF1 (ENSOANG00000000937)	FIG4 (ENSOANG00000000932)
Anura	ANCESTRAL SPECIES	8	ENSGT00940000156143 #8	ENSGT00940000154272.A #9	ENSGT00940000160200 #10	ENSGT00940000164536	ENSGT00940000155625 #11	ENSGT00940000163155 #12	ENSGT00940000157719 #13	ENSGT00730000111138 #14	ENSGT01060000248664	ENSGT00390000007284 #15	ENSGT00950000182919.A #16	ENSGT00940000155184 #17	ENSGT00940000162208 #18	ENSGT00390000011769 #19	ENSGT00940000157179 #21	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000154755	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00940000155887 #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156652
Frog	MODERN SPECIES	5	ENSXETG00000043889	ddx43 (ENSXETG00000011767)	tent5c (ENSXETG00000011768)	nr0b2 (ENSXETG00000040488)	bckdhb (ENSXETG00000011773)	tent5a (ENSXETG00000037475)	ibtk (ENSXETG00000018679)	ENSXETG00000041840	irf6.2 (ENSXETG00000018661)	ENSXETG00000038445	irf6 (ENSXETG00000018674)	tpbg (ENSXETG00000045537)	ENSXETG00000039982	ube3d (ENSXETG00000022677)	dop1a (ENSXETG00000022675)	ndufaf4 (ENSXETG00000022674) #22	pgm3 (ENSXETG00000022673)	rwdd2a (ENSXETG00000022672)	me1 (ENSXETG00000022647)	prss35 (ENSXETG00000045376)	snap91 (ENSXETG00000022629)	ripply2.1 (ENSXETG00000040815)	ripply2.2 (ENSXETG00000048764)	ENSXETG00000042583	cyp3a4.2 (ENSXETG00000044305)	cyb5r4 (ENSXETG00000022592)	mrap2 (ENSXETG00000018157)	tbx18 (ENSXETG00000018148)	ENSXETG00000042284	ENSXETG00000042011	nt5e (ENSXETG00000018096)
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000026807	ENSLLEG00000026991	ENSLLEG00000027089	ENSLLEG00000027112	STRN (ENSLLEG00000027232)	PPP1R14C (ENSLLEG00000027623)	FAXC (ENSLLEG00000027665) #16	FBXL4 (ENSLLEG00000027710) #17	POU3F2 (ENSLLEG00000027756) #18	ENSLLEG00000027771	ENSLLEG00000027794	ENSLLEG00000027804	ENSLLEG00000027822	MMS22L (ENSLLEG00000027848) #19	KLHL32 (ENSLLEG00000027990) #21	ENSLLEG00000028102 #22	GPR63 (ENSLLEG00000028126) #23	FHL5 (ENSLLEG00000028132) #24	UFL1 (ENSLLEG00000028160) #25	ENSLLEG00000004989	FUT9 (ENSLLEG00000005028) #26	ENSLLEG00000005037	ENSLLEG00000005049	ENSLLEG00000005062	MANEA (ENSLLEG00000005077) #27	ENSLLEG00000005094	EPHA7 (ENSLLEG00000005161) #28	MAP3K7 (ENSLLEG00000005493) #29	BACH2 (ENSLLEG00000006306) #30	ENSLLEG00000006351	ENSLLEG00000006360
Coelacanth	MODERN SPECIES	1318																NDUFAF4 (ENSLACG00000002198) #22	GPR63 (ENSLACG00000005849) #23	FHL5 (ENSLACG00000008009) #24	UFL1 (ENSLACG00000009456) #25	FUT9 (ENSLACG00000010879) #26	MANEA (ENSLACG00000011966) #27
Actinopterygii	ANCESTRAL SPECIES	27	ENSGT00940000159402	ENSGT00940000160000	ENSGT00940000170463	ENSGT00940000164609	ENSGT00940000155462	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000159970	ENSGT00730000111419	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT00940000163438	ENSGT01100000263543.c	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34
Neopterygii	ANCESTRAL SPECIES	5	ENSGT00940000156226	ENSGT00940000170463	ENSGT00940000164609	ENSGT00940000155462	ENSGT00940000164843.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000159970	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00530000063596.A.j	ENSGT00950000183028.a.a.b #24	ENSGT00390000002112 #25	ENSGT00940000155095 #26	ENSGT00390000016054.a #27	ENSGT00940000160189 #28	ENSGT01100000263543.c	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34
Osteoglossocephalai	ANCESTRAL SPECIES	2	ENSGT00940000155462.`b.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000159970	ENSGT00730000111419.a	ENSGT00990000210177	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.b #31	ENSGT00940000155887.a #36	ENSGT00950000183031.A.a.b #37	ENSGT00940000156864.c	ENSGT00940000167916	ENSGT01090000260070.D.a #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34
Osteoglossiformes	ANCESTRAL SPECIES	11	ENSGT00940000157966	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000155462.`b.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424	ENSGT00730000111419.a	ENSGT00990000210177	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a.s #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000158591.f	ENSGT00390000003365
Asian bonytongue	MODERN SPECIES		mfsd4b (ENSSFOG00015020952)	REV3L (ENSSFOG00015020961)	FYN (ENSSFOG00015021008)	ENSSFOG00015024953	ccn6 (ENSSFOG00015021113)	tube1 (ENSSFOG00015021118)	lama4 (ENSSFOG00015021131)	marcksa (ENSSFOG00015031065)	ENSSFOG00015029402	HDAC2 (ENSSFOG00015021171)	HS3ST5 (ENSSFOG00015031919)	FRK (ENSSFOG00015027272)	COL10A1 (ENSSFOG00015021292)	nt5dc1 (ENSSFOG00015021275)	dse (ENSSFOG00015021300)	NDUFAF4 (ENSSFOG00015021309) #22	GPR63 (ENSSFOG00015021315) #23	ufl1 (ENSSFOG00015021424) #25	FUT9 (ENSSFOG00015021469) #26	FUT9 (ENSSFOG00015021476) #26	FUT9 (ENSSFOG00015021481) #26	epha7 (ENSSFOG00015021490)	map3k7 (ENSSFOG00015021548) #29	BACH2 (ENSSFOG00015021616) #30	GJA10 (ENSSFOG00015021622) #31	casp8ap2 (ENSSFOG00015021637) #33	lyrm2 (ENSSFOG00015028587)	ankrd6b (ENSSFOG00015021780) #36	ube2j1 (ENSSFOG00015021828)	GABRR2 (ENSSFOG00015021839)	GABRR1 (ENSSFOG00015021852)
P. kingsleyae	MODERN SPECIES	97	REV3L (ENSPKIG00000019348)	FYN (ENSPKIG00000019310)	ENSPKIG00000019223	ccn6 (ENSPKIG00000019211)	tube1 (ENSPKIG00000019145)	lama4 (ENSPKIG00000019078)	marcksa (ENSPKIG00000019063)	ENSPKIG00000019049	HDAC2 (ENSPKIG00000018988)	HS3ST5 (ENSPKIG00000018953)	FRK (ENSPKIG00000018922)	COL10A1 (ENSPKIG00000018910)	nt5dc1 (ENSPKIG00000018862)	dse (ENSPKIG00000018831)	ENSPKIG00000018817	NDUFAF4 (ENSPKIG00000018806) #22	GPR63 (ENSPKIG00000018795) #23	ufl1 (ENSPKIG00000018737) #25	FUT9 (ENSPKIG00000018708) #26	epha7 (ENSPKIG00000018679)	map3k7 (ENSPKIG00000018594) #29	BACH2 (ENSPKIG00000018543) #30	GJA10 (ENSPKIG00000018518) #31	casp8ap2 (ENSPKIG00000018485) #33	MDN1 (ENSPKIG00000018352) #34	LYRM2 (ENSPKIG00000018291) #35	ankrd6b (ENSPKIG00000018207) #36	ube2j1 (ENSPKIG00000018161)	gabrr2a (ENSPKIG00000018134)	GABRR1 (ENSPKIG00000018101)	PM20D2 (ENSPKIG00000018063)
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000159970	ENSGT00730000111419.a	ENSGT00990000210177	ENSGT00940000155725	ENSGT01030000234896	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000158591.g.a
Euteleosteomorpha	ANCESTRAL SPECIES	8	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00990000210177.a	ENSGT00940000155725	ENSGT01030000234896	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000158591.g.a
Acanthomorphata	ANCESTRAL SPECIES	121	ENSGT00940000170463	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT01030000234896	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000158591.g.a	ENSGT00390000003365.a
Euacanthomorphacea	ANCESTRAL SPECIES	75	ENSGT00940000170463	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000158591.g.a	ENSGT00390000003365.a
Percomorphaceae	ANCESTRAL SPECIES	70	ENSGT00940000170463	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT01030000235133 #32	ENSGT00620000088063 #33	ENSGT00970000193844	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000155887.b #36	ENSGT00390000002957 #35	ENSGT00550000074802 #34
Percomorphaceae_B	ANCESTRAL SPECIES	28	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
Percomorphaceae_C	ANCESTRAL SPECIES	24	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
Eupercaria	ANCESTRAL SPECIES	28	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
Tetraodontidae	ANCESTRAL SPECIES	111		ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000155462.`b.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT01030000234896	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23
Fugu	MODERN SPECIES	7	ENSTRUG00000028393	fynb (ENSTRUG00000003538)	ccn6 (ENSTRUG00000031337)	tube1 (ENSTRUG00000005085)	dnal1 (ENSTRUG00000024991)	ENSTRUG00000005418	marcksa (ENSTRUG00000007040)	HDAC2 (ENSTRUG00000006770)	ENSTRUG00000027983	HS3ST5 (ENSTRUG00000006751)	FRK (ENSTRUG00000006360)	nt5dc1 (ENSTRUG00000006279)	COL10A1 (ENSTRUG00000031328)	ENSTRUG00000030927	dse (ENSTRUG00000006239)	ENSTRUG00000030826 #22	GPR63 (ENSTRUG00000006192) #23	LRFN2 (ENSTRUG00000006117)	zgc:112001 (ENSTRUG00000006108)	olfcb1 (ENSTRUG00000005155)	ENSTRUG00000025343	ENSTRUG00000032623	znf292b (ENSTRUG00000030479)	gjb7 (ENSTRUG00000004810)	rad51 (ENSTRUG00000004357)	rmdn3 (ENSTRUG00000020305)	si:ch211-241j12.3 (ENSTRUG00000024604)	ENSTRUG00000032162	cfap206 (ENSTRUG00000003972)	cfap206 (ENSTRUG00000026192)	ENSTRUG00000029371
Eupecaria_A	ANCESTRAL SPECIES	27	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00940000165360	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a
Ballan wrasse	MODERN SPECIES	91	ENSLBEG00000011639	fynb (ENSLBEG00000011605)	ENSLBEG00000011543	ccn6 (ENSLBEG00000011511)	tube1 (ENSLBEG00000011473)	ENSLBEG00000011176	ENSLBEG00000010971	marcksa (ENSLBEG00000010946)	ENSLBEG00000010923	HDAC2 (ENSLBEG00000010831)	HS3ST5 (ENSLBEG00000010782)	FRK (ENSLBEG00000010745)	COL10A1 (ENSLBEG00000010716)	nt5dc1 (ENSLBEG00000010663)	dse (ENSLBEG00000010614)	NDUFAF4 (ENSLBEG00000010595) #22	GPR63 (ENSLBEG00000010582) #23	ufl1 (ENSLBEG00000010496) #25	ENSLBEG00000009883	epha7 (ENSLBEG00000009681)
Eupecaria_B	ANCESTRAL SPECIES	29	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000016036	ENSGT00940000166728
Cottioidei	ANCESTRAL SPECIES	28	ENSGT00390000013943	ENSGT00940000154856.B.d	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a.g	ENSGT00990000203619.A.b.b.a.h	ENSGT00940000165219	ENSGT00940000153417.B	ENSGT00940000157241	ENSGT00940000164252.a.a	ENSGT00940000154004.b	ENSGT00940000154473.b	ENSGT00940000160891	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00550000074802 #34	ENSGT00620000088063 #33	ENSGT01090000260070.D.a #31	ENSGT00940000158228.a #30	ENSGT00940000157785 #29	ENSGT00940000167164	ENSGT00390000002112 #25	ENSGT00940000156987	ENSGT00940000158991	ENSGT00730000111419.a	ENSGT00940000163149.a.b.c.a.a	ENSGT00940000165424.b	ENSGT00940000155723	ENSGT00940000160119
Lumpfish	MODERN SPECIES	16	ENSCLMG00005012636	ttll2 (ENSCLMG00005012637)	GPR31 (ENSCLMG00005012642)	ENSCLMG00005012643	msraa (ENSCLMG00005012644)	ift172 (ENSCLMG00005012648)	cad (ENSCLMG00005012859)	dnajc5ga (ENSCLMG00005017743)	trim54 (ENSCLMG00005017749)	uts1 (ENSCLMG00005017821)	mpv17 (ENSCLMG00005017824)	ENSCLMG00005017833	nt5dc1 (ENSCLMG00005017839)	COL10A1 (ENSCLMG00005017840)	dse (ENSCLMG00005017841)	ENSCLMG00005017842 #22	GPR63 (ENSCLMG00005017843) #23	MDN1 (ENSCLMG00005017846) #34	ENSCLMG00005017851 #33	GJA10 (ENSCLMG00005017852) #31	BACH2 (ENSCLMG00005017853) #30	map3k7 (ENSCLMG00005017854) #29	ENSCLMG00005017864	epha7 (ENSCLMG00005017869)	ufl1 (ENSCLMG00005018328) #25	lyrm2 (ENSCLMG00005018343)	FRK (ENSCLMG00005018344)	HS3ST5 (ENSCLMG00005018345)	ENSCLMG00005018347	ENSCLMG00005018348	ENSCLMG00005018360
Stickleback	MODERN SPECIES	18	slc22a2 (ENSGACG00000005924)	igf2r (ENSGACG00000005960)	ENSGACG00000005977	GPR31 (ENSGACG00000005987)	msraa (ENSGACG00000005989)	ift172 (ENSGACG00000006020)	cad (ENSGACG00000006047)	dnajc5ga (ENSGACG00000006091)	trim54 (ENSGACG00000006098)	uts1 (ENSGACG00000006113)	mpv17 (ENSGACG00000006119)	papola (ENSGACG00000006142)	nt5dc1 (ENSGACG00000006155)	COL10A1 (ENSGACG00000006168)	dse (ENSGACG00000006171)	ENSGACG00000006177 #22	GPR63 (ENSGACG00000006185) #23	MDN1 (ENSGACG00000006188) #34	ENSGACG00000006239 #33	GJA10 (ENSGACG00000006243) #31	BACH2 (ENSGACG00000006245) #30	map3k7 (ENSGACG00000006251) #29	ENSGACG00000006261	epha7 (ENSGACG00000006268)	ufl1 (ENSGACG00000006287) #25	FRK (ENSGACG00000006319)	HS3ST5 (ENSGACG00000006332)	marcksa (ENSGACG00000006334)	ENSGACG00000006336	ENSGACG00000006339	tube1 (ENSGACG00000006385)
Perciformes_a	ANCESTRAL SPECIES	32	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000016036	ENSGT00940000166728
Channel bull blenny	MODERN SPECIES	16	REV3L (ENSCGOG00000007186)	ENSCGOG00000007434	ENSCGOG00000007436	fynb (ENSCGOG00000007518)	ccn6 (ENSCGOG00000013798)	tube1 (ENSCGOG00000013815)	ENSCGOG00000013884	ENSCGOG00000014291	marcksa (ENSCGOG00000014296)	HDAC2 (ENSCGOG00000014421)	HS3ST5 (ENSCGOG00000014548)	FRK (ENSCGOG00000014554)	nt5dc1 (ENSCGOG00000014568)	COL10A1 (ENSCGOG00000014774)	dse (ENSCGOG00000014783)	NDUFAF4 (ENSCGOG00000014784) #22	GPR63 (ENSCGOG00000014785) #23	ufl1 (ENSCGOG00000014789) #25	ENSCGOG00000015295	ENSCGOG00000015296	epha7 (ENSCGOG00000015338)	ENSCGOG00000017395	map3k7 (ENSCGOG00000017412) #29	BACH2 (ENSCGOG00000018402) #30	GJA10 (ENSCGOG00000018404) #31	casp8ap2 (ENSCGOG00000018408) #33	MDN1 (ENSCGOG00000018451) #34	ankrd6b (ENSCGOG00000018990) #36	LYRM2 (ENSCGOG00000019332) #35	GABRR2 (ENSCGOG00000019336)	ube2j1 (ENSCGOG00000019339)
Pike perch	MODERN SPECIES	68	REV3L (ENSSLUG00000023114)	ENSSLUG00000023105	fynb (ENSSLUG00000021489)	ENSSLUG00000021392	ccn6 (ENSSLUG00000021361)	tube1 (ENSSLUG00000021346)	ENSSLUG00000020451	ENSSLUG00000020359	marcksa (ENSSLUG00000020356)	HS3ST5 (ENSSLUG00000020351)	ENSSLUG00000020346	FRK (ENSSLUG00000020340)	COL10A1 (ENSSLUG00000020339)	nt5dc1 (ENSSLUG00000020316)	dse (ENSSLUG00000020307)	NDUFAF4 (ENSSLUG00000020300) #22	GPR63 (ENSSLUG00000020297) #23	ufl1 (ENSSLUG00000020261) #25	ENSSLUG00000020249	epha7 (ENSSLUG00000018142)	ENSSLUG00000018048	ENSSLUG00000018046	ENSSLUG00000018039	map3k7 (ENSSLUG00000017993) #29	BACH2 (ENSSLUG00000017980) #30	GJA10 (ENSSLUG00000017979) #31	casp8ap2 (ENSSLUG00000017975) #33
Eupecaria_C	ANCESTRAL SPECIES	36	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
Gilthead seabream	MODERN SPECIES	14	tube1 (ENSSAUG00010006411)	ENSSAUG00010005436	ENSSAUG00010005419	ENSSAUG00010005418	ENSSAUG00010005417	ENSSAUG00010005415	ENSSAUG00010005414	ENSSAUG00010005392	HDAC2 (ENSSAUG00010005197)	ENSSAUG00010005188	HS3ST5 (ENSSAUG00010005186)	FRK (ENSSAUG00010005174)	COL10A1 (ENSSAUG00010005171)	nt5dc1 (ENSSAUG00010005011)	dse (ENSSAUG00010005008)	NDUFAF4 (ENSSAUG00010005007) #22	GPR63 (ENSSAUG00010005006) #23	ufl1 (ENSSAUG00010005005) #25	epha7 (ENSSAUG00010004890)	ENSSAUG00010004868	map3k7 (ENSSAUG00010004684) #29	BACH2 (ENSSAUG00010004667) #30	GJA10 (ENSSAUG00010004665) #31	ENSSAUG00010004660 #33	MDN1 (ENSSAUG00010004521) #34	lyrm2 (ENSSAUG00010004496)	ENSSAUG00010004493	ankrd6b (ENSSAUG00010004486) #36	GABRR2 (ENSSAUG00010004484)	ENSSAUG00010004482	ube2j1 (ENSSAUG00010004478)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
European seabass	MODERN SPECIES	7	ENSDLAG00005012131	fynb (ENSDLAG00005010553)	ENSDLAG00005010491	CCN6 (ENSDLAG00005033113)	tube1 (ENSDLAG00005010286)	ENSDLAG00005027880	ENSDLAG00005028134	MARCKS (ENSDLAG00005029034)	ENSDLAG00005010073	HDAC2 (ENSDLAG00005009118)	FRK (ENSDLAG00005009085)	ENSDLAG00005009075	COL10A1 (ENSDLAG00005009072)	NT5DC1 (ENSDLAG00005029124)	ENSDLAG00005009031	NDUFAF4 (ENSDLAG00005009019) #22	GPR63 (ENSDLAG00005034962) #23	ufl1 (ENSDLAG00005008918) #25	epha7 (ENSDLAG00005008250)	ENSDLAG00005027871	map3k7 (ENSDLAG00005007772) #29	ENSDLAG00005007749	ENSDLAG00005007741	BACH2 (ENSDLAG00005007725) #30	GJA10 (ENSDLAG00005007716) #31	casp8ap2 (ENSDLAG00005007702) #33	ENSDLAG00005007692	MDN1 (ENSDLAG00005005914) #34	lyrm2 (ENSDLAG00005026971)	ankrd6b (ENSDLAG00005005390) #36	ENSDLAG00005005354
Large yellow croaker	MODERN SPECIES	482	tube1 (ENSLCRG00005003661)	ccn6 (ENSLCRG00005003662)	ENSLCRG00005003676	ENSLCRG00005004175	ENSLCRG00005004180	ENSLCRG00005004182	ENSLCRG00005004185	marcksa (ENSLCRG00005004187)	HDAC2 (ENSLCRG00005004219)	ENSLCRG00005006339	HS3ST5 (ENSLCRG00005006340)	FRK (ENSLCRG00005006342)	nt5dc1 (ENSLCRG00005006346)	COL10A1 (ENSLCRG00005006363)	dse (ENSLCRG00005006365)	NDUFAF4 (ENSLCRG00005006369) #22	GPR63 (ENSLCRG00005006370) #23	ufl1 (ENSLCRG00005006384) #25	epha7 (ENSLCRG00005006440)	map3k7 (ENSLCRG00005011095) #29	BACH2 (ENSLCRG00005011452) #30	GJA10 (ENSLCRG00005011457) #31	casp8ap2 (ENSLCRG00005011459) #33	MDN1 (ENSLCRG00005011477) #34	LYRM2 (ENSLCRG00005011755) #35	ankrd6b (ENSLCRG00005011762) #36	GABRR2 (ENSLCRG00005011766)	ube2j1 (ENSLCRG00005011774)	GABRR1 (ENSLCRG00005011782)	PM20D2 (ENSLCRG00005012085)	ENSLCRG00005012087
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00940000178072	ENSGT00950000182878.b.b
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00940000165360	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000001568	ankrd6b (ENSMAMG00000001595) #36	lyrm2 (ENSMAMG00000001625)	MDN1 (ENSMAMG00000001678) #34	casp8ap2 (ENSMAMG00000002538) #33	GJA10 (ENSMAMG00000002566) #31	BACH2 (ENSMAMG00000002574) #30	map3k7 (ENSMAMG00000002593) #29	ENSMAMG00000026462	ENSMAMG00000026311	ENSMAMG00000002973	UFL1 (ENSMAMG00000003053) #25	nt5dc1 (ENSMAMG00000003150)	ENSMAMG00000003205	dse (ENSMAMG00000003223)	ENSMAMG00000026714 #22	ENSMAMG00000003246 #23	FRK (ENSMAMG00000003256)	ENSMAMG00000017188	ENSMAMG00000003312	HDAC2 (ENSMAMG00000003340)	ENSMAMG00000027627	ENSMAMG00000024743	ENSMAMG00000003456	tube1 (ENSMAMG00000003851)	CCN6 (ENSMAMG00000003901)	ENSMAMG00000003930	FYN (ENSMAMG00000004025)	ENSMAMG00000004177	REV3L (ENSMAMG00000004205)	MFSD4B (ENSMAMG00000004230)
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00970000193844	ENSGT00940000156652	ENSGT00550000074802 #34	ENSGT00940000165360	ENSGT00940000155887.b #36
Siamese fighting fish	MODERN SPECIES	13	ENSBSLG00000025098	ENSBSLG00000025097	ENSBSLG00000025095	ENSBSLG00000025093	ENSBSLG00000025085	ENSBSLG00000025084	ENSBSLG00000025083	ENSBSLG00000025082	ENSBSLG00000025080	ENSBSLG00000025078	ENSBSLG00000025076	ENSBSLG00000025074	ENSBSLG00000025072	ENSBSLG00000025065	dse (ENSBSLG00000025061)	NDUFAF4 (ENSBSLG00000025046) #22	GPR63 (ENSBSLG00000025041) #23	ufl1 (ENSBSLG00000024963) #25	epha7 (ENSBSLG00000024738)	ENSBSLG00000024709	COL10A1 (ENSBSLG00000024708)	nt5dc1 (ENSBSLG00000024699)	ENSBSLG00000024696	ENSBSLG00000024695	ENSBSLG00000024693	map3k7 (ENSBSLG00000024544) #29	ENSBSLG00000024510	BACH2 (ENSBSLG00000024488) #30	GJA10 (ENSBSLG00000024483) #31	ENSBSLG00000024482	ube2j1 (ENSBSLG00000024423)
Climbing perch	MODERN SPECIES	15	ENSATEG00000012723	fynb (ENSATEG00000012659)	ENSATEG00000012643	CCN6 (ENSATEG00000012634)	tube1 (ENSATEG00000027346)	ENSATEG00000012483	ENSATEG00000012450	ENSATEG00000012320	MARCKS (ENSATEG00000012285)	HDAC2 (ENSATEG00000012237)	HS3ST5 (ENSATEG00000012220)	FRK (ENSATEG00000012166)	COL10A1 (ENSATEG00000012158)	NT5DC1 (ENSATEG00000012105)	ENSATEG00000025202	ENSATEG00000029123 #22	ENSATEG00000012063 #23	ENSATEG00000012029	ENSATEG00000011991	ENSATEG00000025345	ENSATEG00000029697	ENSATEG00000011945	ube2j1 (ENSATEG00000011911)	ANKRD6 (ENSATEG00000011880) #36	ENSATEG00000011893	MDN1 (ENSATEG00000011603) #34	casp8ap2 (ENSATEG00000011491) #33	GJA10 (ENSATEG00000011466) #31	BACH2 (ENSATEG00000011447) #30	map3k7 (ENSATEG00000029872) #29	ENSATEG00000008271
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00950000182878.b.b	ENSGT00940000155731.a
Carangaria_A	ANCESTRAL SPECIES	68	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000179536	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00940000165360	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000179536	ENSGT00970000193381.a.b.b.c.a.a	ENSGT00940000163149.a.b.c.a.a.e	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00940000165360	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376	ENSGT00390000018505
Greater amberjack	MODERN SPECIES	10	ENSSDUG00000010206	ccn6 (ENSSDUG00000010183)	tube1 (ENSSDUG00000010088)	ENSSDUG00000009762	ENSSDUG00000009730	ENSSDUG00000009721	ENSSDUG00000009617	ENSSDUG00000009595	marcksa (ENSSDUG00000009591)	HDAC2 (ENSSDUG00000009517)	HS3ST5 (ENSSDUG00000009500)	FRK (ENSSDUG00000009469)	COL10A1 (ENSSDUG00000009465)	nt5dc1 (ENSSDUG00000009437)	dse (ENSSDUG00000009426)	NDUFAF4 (ENSSDUG00000009417) #22	GPR63 (ENSSDUG00000009413) #23	ufl1 (ENSSDUG00000009381) #25	epha7 (ENSSDUG00000009344)	ENSSDUG00000009336	FLOT2 (ENSSDUG00000009326)	map3k7 (ENSSDUG00000009266) #29	BACH2 (ENSSDUG00000009249) #30	GJA10 (ENSSDUG00000009241) #31	casp8ap2 (ENSSDUG00000009230) #33	ENSSDUG00000009190 #34	MDN1 (ENSSDUG00000009000) #34	lyrm2 (ENSSDUG00000008974)	ankrd6b (ENSSDUG00000008898) #36	GABRR2 (ENSSDUG00000008861)	ube2j1 (ENSSDUG00000008851)
Yellowtail amberjack	MODERN SPECIES	3194	fynb (ENSSLDG00000013902)	ENSSLDG00000013830	ccn6 (ENSSLDG00000013804)	tube1 (ENSSLDG00000013782)	ENSSLDG00000013724	ENSSLDG00000013702	ENSSLDG00000013677	ENSSLDG00000013452	marcksa (ENSSLDG00000013404)	HDAC2 (ENSSLDG00000013387)	HS3ST5 (ENSSLDG00000013370)	FRK (ENSSLDG00000013349)	COL10A1 (ENSSLDG00000013336)	nt5dc1 (ENSSLDG00000013308)	dse (ENSSLDG00000013289)	NDUFAF4 (ENSSLDG00000013282) #22	GPR63 (ENSSLDG00000013274) #23
Barramundi perch	MODERN SPECIES	210												FRK (ENSLCAG00010012485)	COL10A1 (ENSLCAG00010012480)	nt5dc1 (ENSLCAG00010012469)	dse (ENSLCAG00010012458)	NDUFAF4 (ENSLCAG00010012451) #22	GPR63 (ENSLCAG00010012447) #23	ufl1 (ENSLCAG00010012434) #25	epha7 (ENSLCAG00010011456)	MAP3K7 (ENSLCAG00010011225) #29	ENSLCAG00010011210	GJA10 (ENSLCAG00010011206) #31	ENSLCAG00010011201 #33	ENSLCAG00010011100	ENSLCAG00010011096 #36
Pleuronectoidei	ANCESTRAL SPECIES	46	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00950000182878.b.b	ENSGT00940000155731.a
Tongue sole	MODERN SPECIES	17	REV3L (ENSCSEG00000017283)	ENSCSEG00000017263	ENSCSEG00000017248	FYN (ENSCSEG00000017233)	ENSCSEG00000017228	ENSCSEG00000017224	ccn6 (ENSCSEG00000017034)	ENSCSEG00000016997	marcksa (ENSCSEG00000016991)	HDAC2 (ENSCSEG00000016978)	HS3ST5 (ENSCSEG00000016969)	FRK (ENSCSEG00000016944)	COL10A1 (ENSCSEG00000016899)	nt5dc1 (ENSCSEG00000016880)	dse (ENSCSEG00000016870)	ENSCSEG00000016864 #22	GPR63 (ENSCSEG00000016860) #23	ENSCSEG00000016856	epha7 (ENSCSEG00000016445)	gopc (ENSCSEG00000016000)	ENSCSEG00000015993	ddx51 (ENSCSEG00000015970)	smim8 (ENSCSEG00000015963)	ENSCSEG00000015949	ENSCSEG00000015948	olfcb1 (ENSCSEG00000015943)	ENSCSEG00000015941	ENSCSEG00000015939	hsf2 (ENSCSEG00000015936)	gja1b (ENSCSEG00000015924) ##31	nus1 (ENSCSEG00000015909)
Turbot	MODERN SPECIES	12	ENSSMAG00000028716	ENSSMAG00000012000	ENSSMAG00000031464	ENSSMAG00000032217	ENSSMAG00000034985	ENSSMAG00000000999	MARCKS (ENSSMAG00000000975)	ENSSMAG00000000957	ENSSMAG00000000937	HS3ST5 (ENSSMAG00000000917)	ENSSMAG00000023460	FRK (ENSSMAG00000000878)	nt5dc1 (ENSSMAG00000018322)	COL10A1 (ENSSMAG00000018381)	dse (ENSSMAG00000018215)	NDUFAF4 (ENSSMAG00000018226) #22	GPR63 (ENSSMAG00000018232) #23	ufl1 (ENSSMAG00000018238) #25	epha7 (ENSSMAG00000018269)	ENSSMAG00000037402	ENSSMAG00000032345	TAK1 (ENSSMAG00000002251) #29	BACH2 (ENSSMAG00000002221) #30	GJA10 (ENSSMAG00000002208) #31	ENSSMAG00000002157 #33	MDN1 (ENSSMAG00000001774) #34	lyrm2 (ENSSMAG00000001747)	ANKRD6 (ENSSMAG00000001618) #36	ENSSMAG00000001568	ENSSMAG00000001540	ENSSMAG00000001517
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00390000003365.a	ENSGT00940000158591.g.a	ENSGT00940000156652	ENSGT00940000156864.d
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00940000159970	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D.a #31	ENSGT01030000235133.a.a #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a
Oryzias	ANCESTRAL SPECIES	38	ENSGT00390000003855.b.e.b	ENSGT00940000167177	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000177477	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D.a #31	ENSGT01030000235133.a.a #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a
Oryzias_b	ANCESTRAL SPECIES	55	ENSGT00900000141110	ENSGT00390000003855.b.e.b	ENSGT00940000167177	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT00940000167916	ENSGT01090000260070.D.a #31	ENSGT01030000235133.a.a #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a
Javanese ricefish	MODERN SPECIES	16	ENSOJAG00000019359	tmem151ba (ENSOJAG00000019342)	nfkbie (ENSOJAG00000019334)	slc35b2 (ENSOJAG00000019284)	hsp90ab1 (ENSOJAG00000018199)	rbm25b (ENSOJAG00000018091)	eif2s1b (ENSOJAG00000018078)	atp6v1d (ENSOJAG00000017892)	pals1b (ENSOJAG00000017852)	gphnb (ENSOJAG00000017530)	FUT8 (ENSOJAG00000017463)	FRK (ENSOJAG00000017360)	COL10A1 (ENSOJAG00000017354)	nt5dc1 (ENSOJAG00000017285)	dse (ENSOJAG00000017271)	ENSOJAG00000017266 #22	GPR63 (ENSOJAG00000017255) #23	ENSOJAG00000017232	ENSOJAG00000017103	ENSOJAG00000017079	epha7 (ENSOJAG00000014690)	map3k7 (ENSOJAG00000014402) #29	ENSOJAG00000014396 #30	ENSOJAG00000014381	GJA10 (ENSOJAG00000014372) #31	ENSOJAG00000014333 #33	LYRM2 (ENSOJAG00000018070) #35	ankrd6b (ENSOJAG00000018034) #36	ENSOJAG00000018030	GABRR2 (ENSOJAG00000017969)	ENSOJAG00000017960
Indian medaka	MODERN SPECIES	22	ino80 (ENSOMEG00000003791)	chac1 (ENSOMEG00000003717)	dll4 (ENSOMEG00000003701)	fynb (ENSOMEG00000003649)	ENSOMEG00000003626	ccn6 (ENSOMEG00000003611)	tube1 (ENSOMEG00000003592)	ENSOMEG00000003553	marcksa (ENSOMEG00000003511)	HDAC2 (ENSOMEG00000003501)	HS3ST5 (ENSOMEG00000003464)	FRK (ENSOMEG00000003439)	nt5dc1 (ENSOMEG00000003405)	COL10A1 (ENSOMEG00000003386)	dse (ENSOMEG00000003376)	ENSOMEG00000003363 #22	GPR63 (ENSOMEG00000003355) #23	e2f6 (ENSOMEG00000003348)	hivep2a (ENSOMEG00000003314)	clpp (ENSOMEG00000003271)	aldh3b1 (ENSOMEG00000003237)	ppp4cb (ENSOMEG00000003223)	zgc:86896 (ENSOMEG00000003180)	wipi1 (ENSOMEG00000003137)	SLC16A6 (ENSOMEG00000000066)	gna13a (ENSOMEG00000003099)	rgs9a (ENSOMEG00000003083)	COG1 (ENSOMEG00000003049)	ENSOMEG00000003034	glyr1 (ENSOMEG00000003013)	pyya (ENSOMEG00000002972)
Oryzias_a	ANCESTRAL SPECIES	48	ENSGT00390000003855.b.e.b	ENSGT00940000167177	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000177477	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00950000182892.b.b	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a
Japanese Medaka HdrR	MODERN SPECIES	16	chac1 (ENSORLG00000023085)	dll4 (ENSORLG00000018020)	fynb (ENSORLG00000018018)	ENSORLG00000018016	ccn6 (ENSORLG00000018013)	tube1 (ENSORLG00000018008)	ENSORLG00000017997	marcksa (ENSORLG00000017991)	ENSORLG00000026848	HDAC2 (ENSORLG00000017990)	HS3ST5 (ENSORLG00000024718)	FRK (ENSORLG00000017982)	COL10A1 (ENSORLG00000027315)	nt5dc1 (ENSORLG00000017979)	dse (ENSORLG00000021842)	NDUFAF4 (ENSORLG00000017975) #22	GPR63 (ENSORLG00000017974) #23	ufl1 (ENSORLG00000017971) #25	epha7 (ENSORLG00000017959)	map3k7 (ENSORLG00000017940) #29	ENSORLG00000029360	BACH2 (ENSORLG00000017926) #30	GJA10 (ENSORLG00000017923) #31	casp8ap2 (ENSORLG00000017922) #33	MDN1 (ENSORLG00000017913) #34	LYRM2 (ENSORLG00000017896) #35	ankrd6b (ENSORLG00000025812) #36	ENSORLG00000017892	ube2j1 (ENSORLG00000017888)	gabrr1 (ENSORLG00000017884)	ENSORLG00000017882
Chinese medaka	MODERN SPECIES	242												FRK (ENSOSIG00000019135)	COL10A1 (ENSOSIG00000019130)	nt5dc1 (ENSOSIG00000019127)	dse (ENSOSIG00000019126)	ENSOSIG00000019124 #22	GPR63 (ENSOSIG00000019121) #23
Cyprinodontiformes	ANCESTRAL SPECIES	54	ENSGT00940000156535	ENSGT00940000158591.g.a	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000155887.b #36	ENSGT00390000002957 #35	ENSGT00550000074802 #34	ENSGT00620000088063 #33	ENSGT01090000260070.D.a #31	ENSGT00940000158228.a #30	ENSGT00940000157785 #29	ENSGT00940000167164	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
Cyprinodontoidei	ANCESTRAL SPECIES	84			ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000155887.b #36	ENSGT00390000002957 #35	ENSGT00550000074802 #34	ENSGT00620000088063 #33	ENSGT01090000260070.D.a #31	ENSGT00940000158228.a #30	ENSGT00940000157785 #29	ENSGT00940000167164	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
NAME_4	ANCESTRAL SPECIES	387												ENSGT00940000156987.g	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
Mummichog	MODERN SPECIES	605												FRK (ENSFHEG00000005504)	COL10A1 (ENSFHEG00000005519)	nt5dc1 (ENSFHEG00000005562)	dse (ENSFHEG00000005600)	NDUFAF4 (ENSFHEG00000000145) #22	GPR63 (ENSFHEG00000005638) #23	ufl1 (ENSFHEG00000005782) #25
Sheepshead minnow	MODERN SPECIES	1903																ENSCVAG00000006193 #22	AMIGO3 (ENSCVAG00000006199)	ENSCVAG00000006205
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000155887.b #36	ENSGT00390000002957 #35	ENSGT00550000074802 #34	ENSGT00620000088063 #33	ENSGT01090000260070.D.a #31	ENSGT00940000158228.a #30	ENSGT00940000157785 #29	ENSGT00940000167164	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
Poecilia	ANCESTRAL SPECIES	9	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000155887.b #36	ENSGT00390000002957 #35	ENSGT00550000074802 #34	ENSGT00620000088063 #33	ENSGT01090000260070.D.a #31	ENSGT00940000158228.a #30	ENSGT00940000157785 #29	ENSGT00940000167164	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
NAME_6	ANCESTRAL SPECIES	503															ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
Amazon molly	MODERN SPECIES	964														dse (ENSPFOG00000022383)	dse (ENSPFOG00000013729)	ENSPFOG00000013704 #22	ctns (ENSPFOG00000013618)	GPR63 (ENSPFOG00000020929) #23	ufl1 (ENSPFOG00000013460) #25
Sailfin molly	MODERN SPECIES	3592																ENSPLAG00000019702 #22
Guppy	MODERN SPECIES	452	ankrd6b (ENSPREG00000001342) #36	ENSPREG00000001352	LYRM2 (ENSPREG00000001357) #35	MDN1 (ENSPREG00000001387) #34	ENSPREG00000001435 #34	casp8ap2 (ENSPREG00000001480) #33	GJA10 (ENSPREG00000001496) #31	BACH2 (ENSPREG00000001540) #30	map3k7 (ENSPREG00000001558) #29	ENSPREG00000001651	epha7 (ENSPREG00000001707)	ENSPREG00000001860	nt5dc1 (ENSPREG00000001894)	COL10A1 (ENSPREG00000001967)	dse (ENSPREG00000001989)	NDUFAF4 (ENSPREG00000002024) #22	GPR63 (ENSPREG00000002036) #23	ufl1 (ENSPREG00000002073) #25	CD2AP (ENSPREG00000002184)	tnfrsf21 (ENSPREG00000002219)	ENSPREG00000002230
Aplocheiloidei	ANCESTRAL SPECIES	269												ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
Turquoise killifish	MODERN SPECIES	52														DSE (ENSNFUG00015019504)	ENSNFUG00015019507	NDUFAF4 (ENSNFUG00015019509) #22	GPR63 (ENSNFUG00015019512) #23	ufl1 (ENSNFUG00015019516) #25
Mangrove rivulus	MODERN SPECIES	182		psmc6 (ENSKMAG00000003814)	cgrrf1 (ENSKMAG00000003867)	hsf2 (ENSKMAG00000003877)	ENSKMAG00000003890	ENSKMAG00000003903	gja1b (ENSKMAG00000003917) ##31	ENSKMAG00000003928	ENSKMAG00000003945	mcm9 (ENSKMAG00000003963)	ENSKMAG00000003993	gopc (ENSKMAG00000004021)	nt5dc1 (ENSKMAG00000004061)	COL10A1 (ENSKMAG00000004096)	dse (ENSKMAG00000004110)	ENSKMAG00000004134 #22	ENSKMAG00000004145	GPR63 (ENSKMAG00000004155) #23	ENSKMAG00000004182	ufl1 (ENSKMAG00000004199) #25
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000177477	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
Pomacentridae	ANCESTRAL SPECIES	21	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000180297	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676.e	ENSGT00940000154317.a.b.b	ENSGT00940000155676.f	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00390000003365.a	ENSGT00390000016036
Pomacentridae_A	ANCESTRAL SPECIES	25	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a	ENSGT00730000111419.a	ENSGT00940000180297	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676.e	ENSGT00940000154317.a.b.b	ENSGT00940000155676.f	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34
Amphiprion	ANCESTRAL SPECIES	14	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00940000163149.a.b.c.a.a.c	ENSGT00940000163149.a.b.c.a.a.d	ENSGT00730000111419.a	ENSGT00940000180297	ENSGT00940000155725	ENSGT00940000177477	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676.f	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000002452	ENSAPEG00000002444	ENSAPEG00000002436	ENSAPEG00000002427	ENSAPEG00000002371	ENSAPEG00000002351	ENSAPEG00000002335	ENSAPEG00000002321	ENSAPEG00000002307	ENSAPEG00000002195	ENSAPEG00000002159	ENSAPEG00000002125	COL10A1 (ENSAPEG00000002103)	nt5dc1 (ENSAPEG00000002067)	dse (ENSAPEG00000002027)	NDUFAF4 (ENSAPEG00000002010) #22	GPR63 (ENSAPEG00000001986) #23	ufl1 (ENSAPEG00000001918) #25	epha7 (ENSAPEG00000001858)	map3k7 (ENSAPEG00000001736) #29	BACH2 (ENSAPEG00000001692) #30	GJA10 (ENSAPEG00000001644) #31	ENSAPEG00000001637 #33	MDN1 (ENSAPEG00000001304) #34	GABRR2 (ENSAPEG00000001260)	ube2j1 (ENSAPEG00000001252)	ENSAPEG00000001207	PM20D2 (ENSAPEG00000001176)	cfap206 (ENSAPEG00000001144)	ENSAPEG00000001128	ENSAPEG00000001088
Clown anemonefish	MODERN SPECIES	3191	ENSAOCG00000008570	ENSAOCG00000008500	ENSAOCG00000008394	marcksa (ENSAOCG00000008380)	ENSAOCG00000008373	HDAC2 (ENSAOCG00000008362)	ENSAOCG00000008331	HS3ST5 (ENSAOCG00000008311)	FRK (ENSAOCG00000008294)	ENSAOCG00000008251	ENSAOCG00000008229	ENSAOCG00000008216	nt5dc1 (ENSAOCG00000008202)	COL10A1 (ENSAOCG00000008159)	dse (ENSAOCG00000008149)	ENSAOCG00000008121 #22	GPR63 (ENSAOCG00000008117) #23
Spiny chromis	MODERN SPECIES	168														nt5dc1 (ENSAPOG00000016754)	dse (ENSAPOG00000016741)	NDUFAF4 (ENSAPOG00000016719) #22	GPR63 (ENSAPOG00000016713) #23	ufl1 (ENSAPOG00000016691) #25	epha7 (ENSAPOG00000016604)	ENSAPOG00000016592
Bicolor damselfish	MODERN SPECIES	1512												FRK (ENSSPAG00000006162)	COL10A1 (ENSSPAG00000006152)	nt5dc1 (ENSSPAG00000006135)	dse (ENSSPAG00000006118)	NDUFAF4 (ENSSPAG00000006109) #22	GPR63 (ENSSPAG00000006104) #23
Cichlidae	ANCESTRAL SPECIES	46	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000177477	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000170463	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000164440	ENSGT00390000002768.b	ENSGT00940000179970	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000170463	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000164440	ENSGT00390000002768.b	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b	ENSGT00390000011674
Haplochromini	ANCESTRAL SPECIES	23	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT01090000260981.a	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b.q #36	ENSGT00940000155887.b.r.b #36	ENSGT00940000164440	ENSGT00390000002768.b	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b
Haplochromini_A	ANCESTRAL SPECIES	26	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000155462.`b.b	ENSGT00940000164843.a.a.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000154348.c.b.b.a.b.d.b.h.a.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b.q #36	ENSGT00940000164440	ENSGT00390000002768.b	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b
Haplochromini_B	ANCESTRAL SPECIES	29	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000155462.`b.b	ENSGT00940000164843.a.a.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000167164	ENSGT00940000154348.c.b.b.a.b.d.b.h.a.b	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b.q #36	ENSGT00940000164440	ENSGT00390000002768.b	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b
Zebra mbuna	MODERN SPECIES	1097	mfsd4b (ENSMZEG00005015667)	REV3L (ENSMZEG00005015682)	ENSMZEG00005015702	fynb (ENSMZEG00005015722)	ENSMZEG00005015743	ccn6 (ENSMZEG00005015756)	tube1 (ENSMZEG00005015763)	ENSMZEG00005015787	marcksa (ENSMZEG00005015838)	HDAC2 (ENSMZEG00005015845)	HS3ST5 (ENSMZEG00005015855)	FRK (ENSMZEG00005015874)	nt5dc1 (ENSMZEG00005015890)	COL10A1 (ENSMZEG00005015905)	dse (ENSMZEG00005015912)	NDUFAF4 (ENSMZEG00005015921) #22	GPR63 (ENSMZEG00005015923) #23	ufl1 (ENSMZEG00005015928) #25	ENSMZEG00005015945	epha7 (ENSMZEG00005015956)	ENSMZEG00005015978	ENSMZEG00005015985	ENSMZEG00005015990	ube2j1 (ENSMZEG00005015995)	ENSMZEG00005016004	GABRR2 (ENSMZEG00005016015)	recql (ENSMZEG00005016027)	GOLT1B (ENSMZEG00005016034)	spx (ENSMZEG00005016040)	gys2 (ENSMZEG00005016045)	ENSMZEG00005016083
Eastern happy	MODERN SPECIES	6	REV3L (ENSACLG00000018811)	ENSACLG00000018859	fynb (ENSACLG00000018933)	ENSACLG00000019018	ccn6 (ENSACLG00000019051)	tube1 (ENSACLG00000019080)	ENSACLG00000019136	marcksa (ENSACLG00000019233)	HDAC2 (ENSACLG00000019252)	HS3ST5 (ENSACLG00000019391)	ENSACLG00000019457	FRK (ENSACLG00000019463)	nt5dc1 (ENSACLG00000019484)	COL10A1 (ENSACLG00000019556)	dse (ENSACLG00000019583)	NDUFAF4 (ENSACLG00000019594) #22	GPR63 (ENSACLG00000019598) #23	ufl1 (ENSACLG00000019612) #25	ENSACLG00000019726	epha7 (ENSACLG00000019736)	ENSACLG00000019784	ENSACLG00000019791	ENSACLG00000019834	ENSACLG00000019837	ENSACLG00000019872	map3k7 (ENSACLG00000019887) #29	ENSACLG00000020009	BACH2 (ENSACLG00000020016) #30	GJA10 (ENSACLG00000020033) #31	ENSACLG00000020049 #33	ENSACLG00000020076 #34
P. nyererei	MODERN SPECIES	460											FRK (ENSPNYG00000017470)	COL10A1 (ENSPNYG00000017459)	nt5dc1 (ENSPNYG00000017426)	ENSPNYG00000017411	dse (ENSPNYG00000017386)	NDUFAF4 (ENSPNYG00000017375) #22	GPR63 (ENSPNYG00000017369) #23	ufl1 (ENSPNYG00000017311) #25	epha7 (ENSPNYG00000017251)	ENSPNYG00000017222
Burton s mouthbrooder	MODERN SPECIES	395	ENSHBUG00000021916	fynb (ENSHBUG00000021963)	ENSHBUG00000021989	ccn6 (ENSHBUG00000021994)	tube1 (ENSHBUG00000022009)	ENSHBUG00000022026	marcksa (ENSHBUG00000022037)	HDAC2 (ENSHBUG00000022068)	HS3ST5 (ENSHBUG00000022092)	ENSHBUG00000022104	FRK (ENSHBUG00000022132)	COL10A1 (ENSHBUG00000022135)	ENSHBUG00000022148	nt5dc1 (ENSHBUG00000022187)	dse (ENSHBUG00000022208)	NDUFAF4 (ENSHBUG00000022222) #22	GPR63 (ENSHBUG00000022229) #23	ufl1 (ENSHBUG00000022275) #25
Lyretail cichlid	MODERN SPECIES	333	ENSNBRG00000011201	ENSNBRG00000011215	fynb (ENSNBRG00000011225)	ENSNBRG00000011258	ccn6 (ENSNBRG00000011314)	tube1 (ENSNBRG00000011358)	ENSNBRG00000011389	marcksa (ENSNBRG00000011420)	HDAC2 (ENSNBRG00000011433)	HS3ST5 (ENSNBRG00000011470)	FRK (ENSNBRG00000011483)	nt5dc1 (ENSNBRG00000011520)	COL10A1 (ENSNBRG00000011556)	ENSNBRG00000011576	dse (ENSNBRG00000011590)	NDUFAF4 (ENSNBRG00000011600) #22	GPR63 (ENSNBRG00000011608) #23	ufl1 (ENSNBRG00000011618) #25	epha7 (ENSNBRG00000011772)	ENSNBRG00000012548	ENSNBRG00000012567	ENSNBRG00000012582	ENSNBRG00000012595	map3k7 (ENSNBRG00000012646) #29	BACH2 (ENSNBRG00000013186) #30	GJA10 (ENSNBRG00000013201) #31	casp8ap2 (ENSNBRG00000013219) #33	MDN1 (ENSNBRG00000013284) #34	LYRM2 (ENSNBRG00000013657) #35	ENSNBRG00000013661 #36	ankrd6b (ENSNBRG00000013689) #36
Nile tilapia	MODERN SPECIES	6	ENSONIG00000031292	ccn6 (ENSONIG00000011364)	tube1 (ENSONIG00000011362)	ENSONIG00000035627	ENSONIG00000011356	ENSONIG00000042152	ENSONIG00000029058	marcks (ENSONIG00000033764)	HDAC2 (ENSONIG00000011350)	HS3ST5 (ENSONIG00000011349)	FRK (ENSONIG00000011345)	COL10A1 (ENSONIG00000011344)	ENSONIG00000040979	nt5dc1 (ENSONIG00000011339)	dse (ENSONIG00000011338)	ndufaf4 (ENSONIG00000042678) #22	GPR63 (ENSONIG00000011335) #23	ufl1 (ENSONIG00000011332) #25	ENSONIG00000030954	epha7 (ENSONIG00000011317)	ENSONIG00000028912	ENSONIG00000042217	ENSONIG00000036489	ENSONIG00000034375	ENSONIG00000036209	ENSONIG00000036896	ENSONIG00000031642	ENSONIG00000031156	MAP3K7 (ENSONIG00000001600) #29	BACH2 (ENSONIG00000001606) #30	GJA10 (ENSONIG00000001608) #31
Midas cichlid	MODERN SPECIES	95												FRK (ENSACIG00000023465)	COL10A1 (ENSACIG00000023463)	nt5dc1 (ENSACIG00000023453)	dse (ENSACIG00000023447)	NDUFAF4 (ENSACIG00000023443) #22	GPR63 (ENSACIG00000023440) #23	ufl1 (ENSACIG00000023423) #25	ENSACIG00000023415	ENSACIG00000023411	ENSACIG00000023406	epha7 (ENSACIG00000023399)
Tiger tail seahorse	MODERN SPECIES	84							ENSHCOG00000020013 #34	ENSHCOG00000019993 #33	GJA10 (ENSHCOG00000019977) #31	kcnk10a (ENSHCOG00000019968)	BDKRB2 (ENSHCOG00000019954)	ENSHCOG00000019936	FRK (ENSHCOG00000019705)	nt5dc1 (ENSHCOG00000019685)	dse (ENSHCOG00000019654)	ENSHCOG00000019644 #22	GPR63 (ENSHCOG00000019635) #23	epha7 (ENSHCOG00000019631)	ENSHCOG00000019604	map3k7 (ENSHCOG00000019579) #29	ENSHCOG00000018949
Pinecone sodierfish	MODERN SPECIES	16	ENSMMDG00005018939	fynb (ENSMMDG00005018083)	ENSMMDG00005018072	ccn6 (ENSMMDG00005018060)	tube1 (ENSMMDG00005018056)	ENSMMDG00005017426	ENSMMDG00005017408	ENSMMDG00005017407	ENSMMDG00005017405	HDAC2 (ENSMMDG00005016678)	HS3ST5 (ENSMMDG00005016668)	FRK (ENSMMDG00005016660)	ENSMMDG00005016656	nt5dc1 (ENSMMDG00005016625)	dse (ENSMMDG00005016619)	NDUFAF4 (ENSMMDG00005016616) #22	GPR63 (ENSMMDG00005016613) #23	ufl1 (ENSMMDG00005016601) #25	epha7 (ENSMMDG00005016397)	ENSMMDG00005016392	map3k7 (ENSMMDG00005015168) #29	BACH2 (ENSMMDG00005015159) #30	GJA10 (ENSMMDG00005015158) #31	casp8ap2 (ENSMMDG00005015156) #33	MDN1 (ENSMMDG00005015147) #34	LYRM2 (ENSMMDG00005015140) #35	ankrd6b (ENSMMDG00005015132) #36	ube2j1 (ENSMMDG00005015124)	GABRR2 (ENSMMDG00005015122)	gabrr1 (ENSMMDG00005015118)	PM20D2 (ENSMMDG00005015117)
Cod	MODERN SPECIES	13	ENSGMOG00000032431	ENSGMOG00000030366	ENSGMOG00000023453	ENSGMOG00000033727	ENSGMOG00000001620	ENSGMOG00000024735	ENSGMOG00000022930	ENSGMOG00000001990	MARCKS (ENSGMOG00000036500)	ENSGMOG00000027318	ENSGMOG00000028109	FRK (ENSGMOG00000018142)	COL10A1 (ENSGMOG00000027500)	NT5DC1 (ENSGMOG00000000025)	ENSGMOG00000035507	NDUFAF4 (ENSGMOG00000001994) #22	GPR63 (ENSGMOG00000020145) #23	ufl1 (ENSGMOG00000001434) #25	ENSGMOG00000022388 #28	ENSGMOG00000024912	MAP3K7 (ENSGMOG00000017415) #29	ENSGMOG00000031505	MDN1 (ENSGMOG00000009684) #34	LYRM2 (ENSGMOG00000032297) #35	ANKRD6 (ENSGMOG00000002106) #36	ube2j1 (ENSGMOG00000015107)	GABRR2 (ENSGMOG00000000454)	gabrr1 (ENSGMOG00000010603)	ENSGMOG00000003573	ENSGMOG00000008550	ENSGMOG00000008560
Protacanthopterygii	ANCESTRAL SPECIES	33	ENSGT00940000164609.a	ENSGT00940000170563	ENSGT00940000155462.`b.b	ENSGT00940000164843.a	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.b	ENSGT00730000111419.a	ENSGT00990000210177.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987.i	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00940000158591.g.a	ENSGT00390000003365.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	177	ENSGT00940000155462.`b.b.c.b	ENSGT00940000164843.b.e.b	ENSGT00940000160119.n	ENSGT00940000155723.o	ENSGT00940000165424.b.a	ENSGT00940000159970	ENSGT00730000111419.a.a	ENSGT00990000210177.a	ENSGT00940000155725	ENSGT00940000163852.c.a.b.b.a.b	ENSGT00940000158991.a	ENSGT00940000156987.i.a	ENSGT00940000155676.b	ENSGT00940000154317.a.b.b.f	ENSGT00390000006522.b.k	ENSGT00390000001627.k #22	ENSGT00950000183001.a.b.a.c #23	ENSGT00390000002112.e #25	ENSGT00940000155095.j #26	ENSGT00940000167164.g	ENSGT00940000157785.f.a #29	ENSGT00940000158228.a.q #30	ENSGT01090000260070.D.a.c #31	ENSGT00620000088063.i.a #33	ENSGT00390000002957 #35	ENSGT00940000155887.b.c #36	ENSGT00940000156652.p	ENSGT00940000156864.d.a	ENSGT00940000158591.g.a.d	ENSGT00390000003365.a	ENSGT00530000063881.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT00940000164609.a	ENSGT00940000155462.`b.b.c.b	ENSGT00940000164843.b.e.b	ENSGT00940000160119.n	ENSGT00940000155723.o	ENSGT00940000165424.b.a	ENSGT00730000111419.a.a	ENSGT00990000210177.a	ENSGT00940000155725	ENSGT00940000163852.c.a.b.b.a.b	ENSGT00940000158991.a	ENSGT00940000156987.i.a	ENSGT00940000154317.a.b.b.f	ENSGT00940000155676.b	ENSGT00390000006522.b.k	ENSGT00390000001627.k #22	ENSGT00950000183001.a.b.a.c #23	ENSGT00390000002112.e #25	ENSGT00940000155095.j #26	ENSGT00940000167164.g	ENSGT00940000157785.f.a #29	ENSGT00940000158228.a.q #30	ENSGT01090000260070.D.a.c #31	ENSGT00620000088063.i.a #33	ENSGT00550000074802.p #34	ENSGT00390000002957 #35	ENSGT00940000155887.b.c #36	ENSGT00940000156652.p	ENSGT00940000156864.d.a	ENSGT00940000158591.g.a.d	ENSGT00390000003365.a
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000164609.a	ENSGT00940000155462.`b.b.c.b	ENSGT00940000164843.b.e.b	ENSGT00940000160119.n	ENSGT00940000155723.o	ENSGT00940000165424.b.a	ENSGT00730000111419.a.a	ENSGT00990000210177.a	ENSGT00940000155725	ENSGT00940000163852.c.a.b.b.a.b	ENSGT00940000158991.a	ENSGT00940000156987.i.a	ENSGT00940000154317.a.b.b.f	ENSGT00940000155676.b	ENSGT00390000006522.b.k	ENSGT00390000001627.k #22	ENSGT00950000183001.a.b.a.c #23	ENSGT00390000002112.e #25	ENSGT00940000155095.j #26	ENSGT00940000167164.g	ENSGT00940000157785.f.a #29	ENSGT00940000158228.a.q #30	ENSGT01090000260070.D.a.c #31	ENSGT00620000088063.i.a #33	ENSGT00550000074802.p #34	ENSGT00390000002957 #35	ENSGT00940000155887.b.c #36	ENSGT00940000156652.p	ENSGT00940000156864.d.a	ENSGT00940000158591.g.a.d	ENSGT00390000003365.a
Atlantic salmon	MODERN SPECIES	25	fynb (ENSSSAG00000064455)	ENSSSAG00000097403	ENSSSAG00000064350	wisp3 (ENSSSAG00000064347)	tube1 (ENSSSAG00000064333)	ENSSSAG00000055127	ENSSSAG00000095441	MARCS (ENSSSAG00000054925)	hdac2 (ENSSSAG00000054858)	ENSSSAG00000054837	HS3ST5 (ENSSSAG00000098424)	FRK (ENSSSAG00000054820)	COL10A1 (ENSSSAG00000067854)	NT5DC1 (ENSSSAG00000054551)	ENSSSAG00000054520	NDUFAF4 (ENSSSAG00000105786) #22	GPR63 (ENSSSAG00000054512) #23	ufl1 (ENSSSAG00000054425) #25	FUT9 (ENSSSAG00000104394) #26	epha7 (ENSSSAG00000053507)	ENSSSAG00000118879	map3k7 (ENSSSAG00000042466) #29	BACH2 (ENSSSAG00000042426) #30	GJA10 (ENSSSAG00000042422) #31	ENSSSAG00000101584 #33	MDN1 (ENSSSAG00000040753) #34	ANKRD6 (ENSSSAG00000039729) #36	ube2j1 (ENSSSAG00000039558)	gabrr2 (ENSSSAG00000039249)	gabrr1 (ENSSSAG00000009452)	PM20D2 (ENSSSAG00000079438)
River trout	MODERN SPECIES		ENSSTUG00000037565	fynb (ENSSTUG00000037621)	ENSSTUG00000038930	ccn6 (ENSSTUG00000038945)	TUBE1 (ENSSTUG00000038960)	ENSSTUG00000039011	marcksa (ENSSTUG00000039897)	ENSSTUG00000039905	HDAC2 (ENSSTUG00000039924)	ENSSTUG00000040319	HS3ST5 (ENSSTUG00000040332)	FRK (ENSSTUG00000040342)	nt5dc1 (ENSSTUG00000040413)	COL10A1 (ENSSTUG00000040594)	dse (ENSSTUG00000040602)	ENSSTUG00000040628 #22	ENSSTUG00000040642	GPR63 (ENSSTUG00000040654) #23	ufl1 (ENSSTUG00000040704) #25	FUT9 (ENSSTUG00000041026) #26	epha7 (ENSSTUG00000041233)	ENSSTUG00000044968	map3k7 (ENSSTUG00000044998) #29	BACH2 (ENSSTUG00000045344) #30	GJA10 (ENSSTUG00000045352) #31	casp8ap2 (ENSSTUG00000045362) #33	MDN1 (ENSSTUG00000045374) #34	LYRM2 (ENSSTUG00000045454) #35	ankrd6b (ENSSTUG00000045473) #36	ube2j1 (ENSSTUG00000045590)	GABRR2 (ENSSTUG00000045620)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00940000164609.a	ENSGT00940000155462.`b.b.c.b	ENSGT00940000164843.b.e.b	ENSGT00940000160119.n	ENSGT00940000155723.o	ENSGT00940000165424.b.a	ENSGT00730000111419.a.a	ENSGT00990000210177.a	ENSGT00940000155725	ENSGT00940000163852.c.a.b.b.a.b	ENSGT00940000158991.a	ENSGT00940000156987.i.a	ENSGT00940000154317.a.b.b.f	ENSGT00940000155676.b	ENSGT00390000006522.b.k	ENSGT00390000001627.k #22	ENSGT00950000183001.a.b.a.c #23	ENSGT00390000002112.e #25	ENSGT00940000155095.j #26	ENSGT00940000167164.g	ENSGT00940000157785.f.a #29	ENSGT00940000158228.a.q #30	ENSGT01090000260070.D.a.c #31	ENSGT00620000088063.i.a #33	ENSGT00390000002957 #35	ENSGT00940000155887.b.c #36	ENSGT00940000156652.p	ENSGT00940000156864.d.a	ENSGT00940000158591.g.a.d	ENSGT00390000003365.a	ENSGT00530000063881.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00940000164609.a	ENSGT00940000155462.`b.b.c.b	ENSGT00940000164843.b.e.b	ENSGT00940000160119.n	ENSGT00940000155723.o	ENSGT00940000165424.b.a	ENSGT00730000111419.a.a	ENSGT00990000210177.a	ENSGT00940000155725	ENSGT00940000163852.c.a.b.b.a.b	ENSGT00940000158991.a	ENSGT00940000156987.i.a	ENSGT00940000154317.a.b.b.f	ENSGT00940000155676.b	ENSGT00390000006522.b.k	ENSGT00390000001627.k #22	ENSGT00950000183001.a.b.a.c #23	ENSGT00390000002112.e #25	ENSGT00940000155095.j #26	ENSGT00940000167164.g	ENSGT00940000157785.f.a #29	ENSGT00940000158228.a.q #30	ENSGT01090000260070.D.a.c #31	ENSGT00620000088063.i.a #33	ENSGT00390000002957 #35	ENSGT00940000155887.b.c #36	ENSGT00940000156652.p	ENSGT00940000156864.d.a	ENSGT00940000158591.g.a.d	ENSGT00390000003365.a	ENSGT00530000063881.a.a.b
Coho salmon	MODERN SPECIES	13	REV3L (ENSOKIG00005017495)	ENSOKIG00005017425	fynb (ENSOKIG00005016693)	ENSOKIG00005016645	ccn6 (ENSOKIG00005016640)	TUBE1 (ENSOKIG00005016622)	ENSOKIG00005013012	MARCKS (ENSOKIG00005012852)	HDAC2 (ENSOKIG00005012676)	ENSOKIG00005012611	HS3ST5 (ENSOKIG00005012601)	FRK (ENSOKIG00005012555)	COL10A1 (ENSOKIG00005012546)	NT5DC1 (ENSOKIG00005012518)	dse (ENSOKIG00005012509)	NDUFAF4 (ENSOKIG00005012503) #22	GPR63 (ENSOKIG00005012498) #23	ufl1 (ENSOKIG00005012399) #25	FUT9 (ENSOKIG00005012375) #26	epha7 (ENSOKIG00005009967)	ENSOKIG00005009845	MAP3K7 (ENSOKIG00005009130) #29	BACH2 (ENSOKIG00005009082) #30	GJA10 (ENSOKIG00005009073) #31	casp8ap2 (ENSOKIG00005009010) #33	LYRM2 (ENSOKIG00005007594) #35	ankrd6b (ENSOKIG00005006622) #36	ube2j1 (ENSOKIG00005006553)	GABRR2 (ENSOKIG00005006453)	PM20D2 (ENSOKIG00005006423)	pnrc1 (ENSOKIG00005006415)
Chinook salmon	MODERN SPECIES	9	ENSOTSG00005016476	fynb (ENSOTSG00005016411)	ENSOTSG00005016408	ccn6 (ENSOTSG00005016407)	TUBE1 (ENSOTSG00005016405)	ENSOTSG00005014712	marcksa (ENSOTSG00005031499)	ENSOTSG00005031498	HDAC2 (ENSOTSG00005031434)	ENSOTSG00005031430	HS3ST5 (ENSOTSG00005031429)	FRK (ENSOTSG00005031428)	COL10A1 (ENSOTSG00005031427)	nt5dc1 (ENSOTSG00005031425)	dse (ENSOTSG00005031424)	NDUFAF4 (ENSOTSG00005031423) #22	GPR63 (ENSOTSG00005031422) #23	ufl1 (ENSOTSG00005031418) #25	FUT9 (ENSOTSG00005031416) #26	epha7 (ENSOTSG00005026547)	MAP3K7 (ENSOTSG00005022541) #29	BACH2 (ENSOTSG00005022536) #30	GJA10 (ENSOTSG00005022534) #31	ENSOTSG00005022532 #33	LYRM2 (ENSOTSG00005022523) #35	ankrd6b (ENSOTSG00005022484) #36	ube2j1 (ENSOTSG00005022481)	gabrr1 (ENSOTSG00005022024)	PM20D2 (ENSOTSG00005022023)	pnrc1 (ENSOTSG00005022022)	rngtt (ENSOTSG00005022009)
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000008914	ccn6 (ENSOMYG00000008875)	tube1 (ENSOMYG00000008799)	ENSOMYG00000008552	MARCKS (ENSOMYG00000008352)	HDAC2 (ENSOMYG00000008291)	ENSOMYG00000002830	ENSOMYG00000049534	ENSOMYG00000057248	ENSOMYG00000008155	HS3ST5 (ENSOMYG00000074544)	FRK (ENSOMYG00000007944)	COL10A1 (ENSOMYG00000007882)	NT5DC1 (ENSOMYG00000067754)	ENSOMYG00000007741	NDUFAF4 (ENSOMYG00000007528) #22	GPR63 (ENSOMYG00000007470) #23	ufl1 (ENSOMYG00000007400) #25	FUT9 (ENSOMYG00000007255) #26	epha7 (ENSOMYG00000005599)	map3k7 (ENSOMYG00000002862) #29	BACH2 (ENSOMYG00000002076) #30	GJA10 (ENSOMYG00000002054) #31	casp8ap2 (ENSOMYG00000002031) #33	lyrm2 (ENSOMYG00000001558) #35	ANKRD6 (ENSOMYG00000001538) #36	ube2j1 (ENSOMYG00000001413)	GABRR2 (ENSOMYG00000001359)	gabrr1 (ENSOMYG00000001339)	PM20D2 (ENSOMYG00000001257)	ENSOMYG00000001250
Huchen	MODERN SPECIES	5	ENSHHUG00000026535	fynb (ENSHHUG00000026547)	ENSHHUG00000028022	ccn6 (ENSHHUG00000028046)	tube1 (ENSHHUG00000028059)	LAMA4 (ENSHHUG00000028112)	ENSHHUG00000028148	marcksa (ENSHHUG00000028185)	ENSHHUG00000028196	ENSHHUG00000028874	HS3ST5 (ENSHHUG00000028890)	FRK (ENSHHUG00000028896)	nt5dc1 (ENSHHUG00000028909)	COL10A1 (ENSHHUG00000028914)	dse (ENSHHUG00000028917)	NDUFAF4 (ENSHHUG00000028921) #22	GPR63 (ENSHHUG00000028925) #23	ufl1 (ENSHHUG00000028927) #25	FUT9 (ENSHHUG00000028934) #26	epha7 (ENSHHUG00000028944)	map3k7 (ENSHHUG00000029318) #29	BACH2 (ENSHHUG00000029484) #30	GJA10 (ENSHHUG00000029497) #31	casp8ap2 (ENSHHUG00000029503) #33	LYRM2 (ENSHHUG00000029570) #35	ankrd6b (ENSHHUG00000029573) #36	ube2j1 (ENSHHUG00000029582)	GABRR2 (ENSHHUG00000029591)	gabrr1 (ENSHHUG00000029663)	PM20D2 (ENSHHUG00000029695)	pnrc1 (ENSHHUG00000029706)
Salmoninae	ANCESTRAL SPECIES	123	ENSGT00940000156226.r.b	ENSGT00940000155462.`b.b.c.a	ENSGT00940000166133	ENSGT00940000155462.`b.b.d	ENSGT00940000164843.a	ENSGT00940000164843.b.e.a	ENSGT00940000160119.m	ENSGT00940000155723.p	ENSGT00940000165424.b.b	ENSGT00730000111419.a.b	ENSGT00940000158991.b	ENSGT00940000156987.i.b	ENSGT00940000155676.a	ENSGT00940000154317.a.b.b.e	ENSGT00390000006522.b.l	ENSGT00390000001627.l #22	ENSGT00950000183001.a.b.a.d #23	ENSGT00390000002112.f #25	ENSGT00940000167164.h	ENSGT00940000157785.f.b #29	ENSGT00940000158228.a.r #30	ENSGT01090000260070.D.a.d #31	ENSGT00620000088063.i.b #33	ENSGT00550000074802 #34	ENSGT00970000193844	ENSGT00940000155887.b.d #36	ENSGT00940000156652.o	ENSGT00940000156864.d.b	ENSGT00940000158591.g.a.c	ENSGT00530000063881.a.a.a	ENSGT00940000156953.i.b
Salmoninae_a	ANCESTRAL SPECIES	42	ENSGT00940000157966.q	ENSGT00530000063320.B.h	ENSGT00940000156226.r.b	ENSGT01030000237090	ENSGT00940000155462.`b.b.c.a	ENSGT00940000164843.b.e.a	ENSGT00940000160119.m	ENSGT00940000155723.p	ENSGT00940000165424.b.b	ENSGT00730000111419.a.b	ENSGT00940000158991.b	ENSGT00940000156987.i.b	ENSGT00940000154317.a.b.b.e	ENSGT00940000155676.a	ENSGT00390000006522.b.l	ENSGT00390000001627.l #22	ENSGT00950000183001.a.b.a.d #23	ENSGT00390000002112.f #25	ENSGT00940000167164.h	ENSGT00940000157785.f.b #29	ENSGT00940000158228.a.r #30	ENSGT01090000260070.D.a.d #31	ENSGT00620000088063.i.b #33	ENSGT00550000074802.o #34	ENSGT00970000193844	ENSGT00940000155887.b.d #36	ENSGT00940000156652.o	ENSGT00940000156864.d.b	ENSGT00940000158591.g.a.c	ENSGT00530000063881.a.a.a	ENSGT00940000156953.i.b
Oncorhynchus	ANCESTRAL SPECIES	35	ENSGT00940000157966.q	ENSGT00530000063320.B.h	ENSGT00940000156226.r.b	ENSGT01030000237090	ENSGT00940000155462.`b.b.c.a	ENSGT00940000164843.b.e.a	ENSGT00940000160119.m	ENSGT00940000155723.p	ENSGT00940000165424.b.b	ENSGT00730000111419.a.b	ENSGT00940000158991.b	ENSGT00940000156987.i.b	ENSGT00940000154317.a.b.b.e	ENSGT00940000155676.a	ENSGT00390000006522.b.l	ENSGT00390000001627.l #22	ENSGT00950000183001.a.b.a.d #23	ENSGT00390000002112.f #25	ENSGT00940000167164.h	ENSGT00940000157785.f.b #29	ENSGT00940000158228.a.r #30	ENSGT01090000260070.D.a.d #31	ENSGT00620000088063.i.b #33	ENSGT00550000074802.o #34	ENSGT00970000193844	ENSGT00940000155887.b.d #36	ENSGT00940000156652.o	ENSGT00940000156864.d.b	ENSGT00940000158591.g.a.c	ENSGT00530000063881.a.a.a	ENSGT00940000156953.i.b
Oncorhynchus_a	ANCESTRAL SPECIES	53	ENSGT00940000157966.q	ENSGT00530000063320.B.h	ENSGT00940000156226.r.b	ENSGT01030000237090	ENSGT00940000155462.`b.b.c.a	ENSGT00940000164843.b.e.a	ENSGT00940000160119.m	ENSGT00940000155723.p	ENSGT00940000165424.b.b	ENSGT00730000111419.a.b	ENSGT00940000158991.b	ENSGT00940000156987.i.b	ENSGT00940000154317.a.b.b.e	ENSGT00940000155676.a	ENSGT00390000006522.b.l	ENSGT00390000001627.l #22	ENSGT00950000183001.a.b.a.d #23	ENSGT00390000002112.f #25	ENSGT00940000167164.h	ENSGT00940000157785.f.b #29	ENSGT00940000158228.a.r #30	ENSGT01090000260070.D.a.d #31	ENSGT00620000088063.i.b #33	ENSGT00550000074802.o #34	ENSGT00970000193844	ENSGT00940000155887.b.d #36	ENSGT00940000156652.o	ENSGT00940000156864.d.b	ENSGT00940000158591.g.a.c	ENSGT00530000063881.a.a.a	ENSGT01060000248564.a.a.a.a.b
Chinook salmon	MODERN SPECIES	29	slc16a10 (ENSOTSG00005018279)	mfsd4b (ENSOTSG00005018276)	REV3L (ENSOTSG00005018260)	ENSOTSG00005018251	fynb (ENSOTSG00005018238)	ENSOTSG00005018236	ccn6 (ENSOTSG00005018221)	TUBE1 (ENSOTSG00005018218)	ENSOTSG00005017248	marcksa (ENSOTSG00005017242)	HS3ST5 (ENSOTSG00005017239)	FRK (ENSOTSG00005017238)	COL10A1 (ENSOTSG00005017237)	nt5dc1 (ENSOTSG00005016844)	dse (ENSOTSG00005016842)	NDUFAF4 (ENSOTSG00005016841) #22	ENSOTSG00005016840	GPR63 (ENSOTSG00005016839) #23	ufl1 (ENSOTSG00005016789) #25	epha7 (ENSOTSG00005013435)	MAP3K7 (ENSOTSG00005009808) #29	BACH2 (ENSOTSG00005009802) #30	casp8ap2 (ENSOTSG00005009801) #33	MDN1 (ENSOTSG00005009798) #34	ENSOTSG00005009795	ankrd6b (ENSOTSG00005009794) #36	ube2j1 (ENSOTSG00005009792)	GABRR2 (ENSOTSG00005009786)	pnrc1 (ENSOTSG00005009785)	cnr1 (ENSOTSG00005009784)	akirin2 (ENSOTSG00005009783)
Coho salmon	MODERN SPECIES	3	MFSD4B (ENSOKIG00005009908)	REV3L (ENSOKIG00005009829)	ENSOKIG00005009798	ENSOKIG00005009792	fynb (ENSOKIG00005008681)	ENSOKIG00005008558	ccn6 (ENSOKIG00005008482)	TUBE1 (ENSOKIG00005008432)	ENSOKIG00005005839	marcksa (ENSOKIG00005005596)	HS3ST5 (ENSOKIG00005005570)	FRK (ENSOKIG00005005555)	COL10A1 (ENSOKIG00005005531)	nt5dc1 (ENSOKIG00005005480)	DSE (ENSOKIG00005005467)	NDUFAF4 (ENSOKIG00005005461) #22	GPR63 (ENSOKIG00005005457) #23	ufl1 (ENSOKIG00005005369) #25	epha7 (ENSOKIG00005003305)	ENSOKIG00005003050	MAP3K7 (ENSOKIG00005002964) #29	BACH2 (ENSOKIG00005002910) #30	GJA10 (ENSOKIG00005002896) #31	casp8ap2 (ENSOKIG00005002883) #33	MDN1 (ENSOKIG00005002761) #34	ANKRD6 (ENSOKIG00005002677) #36	ENSOKIG00005002613	ube2j1 (ENSOKIG00005002580)	GABRR1 (ENSOKIG00005002522)	pnrc1 (ENSOKIG00005002495)	ENSOKIG00005002492
Rainbow trout	MODERN SPECIES	29	MFSD4B (ENSOMYG00000043723)	REV3L (ENSOMYG00000043668)	ENSOMYG00000061277	FYN (ENSOMYG00000043614)	ENSOMYG00000043586	ENSOMYG00000043576	ENSOMYG00000058404	ENSOMYG00000041714	MARCKS (ENSOMYG00000041542)	HS3ST5 (ENSOMYG00000041534)	FRK (ENSOMYG00000041527)	COL10A1 (ENSOMYG00000041520)	NT5DC1 (ENSOMYG00000041488)	ENSOMYG00000056638	ENSOMYG00000041480	NDUFAF4 (ENSOMYG00000041476) #22	GPR63 (ENSOMYG00000041471) #23	ufl1 (ENSOMYG00000041405) #25	epha7 (ENSOMYG00000038386)	map3k7 (ENSOMYG00000034262) #29	BACH2 (ENSOMYG00000033945) #30	GJA10 (ENSOMYG00000033942) #31	casp8ap2 (ENSOMYG00000033939) #33	ENSOMYG00000033931	ANKRD6 (ENSOMYG00000033879) #36	ube2j1 (ENSOMYG00000033801)	GABRR2 (ENSOMYG00000033767)	gabrr1 (ENSOMYG00000033634)	pnrc1 (ENSOMYG00000033629)	ENSOMYG00000056689	rngtt (ENSOMYG00000052237)
Salmo	ANCESTRAL SPECIES	26	ENSGT00940000156226.r.b	ENSGT01030000237090	ENSGT00940000155462.`b.b.c.a	ENSGT00940000164843.b.e.a	ENSGT00940000160119.m	ENSGT00940000155723.p	ENSGT01100000266740	ENSGT00940000165424.b.b	ENSGT00730000111419.a.b	ENSGT00990000210177.b	ENSGT00940000158991.b	ENSGT00940000156987.i.b	ENSGT00940000154317.a.b.b.e	ENSGT00940000155676.a	ENSGT00390000006522.b.l	ENSGT00390000001627.l #22	ENSGT00950000183001.a.b.a.d #23	ENSGT00390000002112.f #25	ENSGT00940000167164.h	ENSGT00940000157785.f.b #29	ENSGT00940000158228.a.r #30	ENSGT01090000260070.D.a.d #31	ENSGT00620000088063.i.b #33	ENSGT00550000074802.o #34	ENSGT00970000193844	ENSGT00940000155887.b.d #36	ENSGT00940000156652.o	ENSGT00940000156864.d.b	ENSGT00940000158591.g.a.c	ENSGT00530000063881.a.a.a	ENSGT00940000156953.i.b
River trout	MODERN SPECIES	28	slc16a10 (ENSSTUG00000034237)	mfsd4b (ENSSTUG00000034247)	REV3L (ENSSTUG00000034284)	ENSSTUG00000034487	ccn6 (ENSSTUG00000034502)	TUBE1 (ENSSTUG00000034518)	ENSSTUG00000034589	ENSSTUG00000034736	marcksa (ENSSTUG00000038416)	ENSSTUG00000038419	HS3ST5 (ENSSTUG00000038432)	FRK (ENSSTUG00000037450)	nt5dc1 (ENSSTUG00000037461)	COL10A1 (ENSSTUG00000037526)	dse (ENSSTUG00000037532)	NDUFAF4 (ENSSTUG00000037545) #22	GPR63 (ENSSTUG00000037551) #23	ufl1 (ENSSTUG00000037569) #25	epha7 (ENSSTUG00000037936)	map3k7 (ENSSTUG00000043384) #29	BACH2 (ENSSTUG00000043728) #30	GJA10 (ENSSTUG00000043739) #31	casp8ap2 (ENSSTUG00000043744) #33	MDN1 (ENSSTUG00000043811) #34	ENSSTUG00000045463	ankrd6b (ENSSTUG00000045483) #36	ube2j1 (ENSSTUG00000045591)	GABRR2 (ENSSTUG00000045654)	pnrc1 (ENSSTUG00000045669)	rngtt (ENSSTUG00000045677)	cnr1 (ENSSTUG00000045691)
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000073969	fynb (ENSSSAG00000070839)	ENSSSAG00000070744	ccn6 (ENSSSAG00000070737)	TUBE1 (ENSSSAG00000070718)	ENSSSAG00000070715	ENSSSAG00000068006	MARCKS (ENSSSAG00000067871)	ENSSSAG00000067868	ENSSSAG00000086095	HS3ST5 (ENSSSAG00000092480)	FRK (ENSSSAG00000067861)	COL10A1 (ENSSSAG00000114656)	NT5DC1 (ENSSSAG00000067837)	ENSSSAG00000067829	NDUFAF4 (ENSSSAG00000067828) #22	GPR63 (ENSSSAG00000067826) #23	ufl1 (ENSSSAG00000066588) #25	epha7 (ENSSSAG00000042905)	ENSSSAG00000119505	ENSSSAG00000089696	map3k7 (ENSSSAG00000045157) #29	BACH2 (ENSSSAG00000097286) #30	GJA10 (ENSSSAG00000045004) #31	casp8ap2 (ENSSSAG00000045001) #33	MDN1 (ENSSSAG00000041975) #34	ENSSSAG00000041852	ANKRD6 (ENSSSAG00000041215) #36	ube2j1 (ENSSSAG00000041153)	GABRR2 (ENSSSAG00000040921)	gabrr1 (ENSSSAG00000037896)
Huchen	MODERN SPECIES	68	mfsd4b (ENSHHUG00000026392)	REV3L (ENSHHUG00000026399)	ENSHHUG00000026411	fynb (ENSHHUG00000026432)	ENSHHUG00000028089	ENSHHUG00000028183	ccn6 (ENSHHUG00000028192)	ENSHHUG00000028210	marcksa (ENSHHUG00000028383)	ENSHHUG00000028390	HS3ST5 (ENSHHUG00000028393)	FRK (ENSHHUG00000028396)	nt5dc1 (ENSHHUG00000028398)	COL10A1 (ENSHHUG00000028420)	dse (ENSHHUG00000028425)	NDUFAF4 (ENSHHUG00000028435) #22	GPR63 (ENSHHUG00000028437) #23	ufl1 (ENSHHUG00000028438) #25
Northern pike	MODERN SPECIES	17	REV3L (ENSELUG00000000782)	ENSELUG00000018263	ENSELUG00000018244	fynb (ENSELUG00000018218)	si:dkey-119m7.4 (ENSELUG00000000742)	ccn6 (ENSELUG00000000755)	tube1 (ENSELUG00000018051)	ENSELUG00000018005	marcksa (ENSELUG00000031360)	HDAC2 (ENSELUG00000017897)	HS3ST5 (ENSELUG00000017858)	FRK (ENSELUG00000017840)	COL10A1 (ENSELUG00000031539)	nt5dc1 (ENSELUG00000017780)	dse (ENSELUG00000017742)	NDUFAF4 (ENSELUG00000033989) #22	GPR63 (ENSELUG00000017719) #23	ufl1 (ENSELUG00000017701) #25	epha7 (ENSELUG00000017596)	map3k7 (ENSELUG00000017538) #29	BACH2 (ENSELUG00000017489) #30	GJA10 (ENSELUG00000000676) #31	casp8ap2 (ENSELUG00000017451) #33	ENSELUG00000017413	MDN1 (ENSELUG00000027898) #34	LYRM2 (ENSELUG00000025524) #35	ankrd6b (ENSELUG00000017380) #36	ube2j1 (ENSELUG00000017333)	GABRR2 (ENSELUG00000017245)	PM20D2 (ENSELUG00000017210)	pnrc1 (ENSELUG00000025397)
Otomorpha	ANCESTRAL SPECIES	177	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT01030000234896	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT01030000235133.d.b #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000165360	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d
Clupeiformes	ANCESTRAL SPECIES	206					ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT01030000234896	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000155676	ENSGT00940000154317.a.b.b	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26	ENSGT00940000167164	ENSGT00940000157785 #29	ENSGT00940000158228.a #30	ENSGT01090000260070.D.a #31	ENSGT01030000235133.d.b #32	ENSGT00620000088063 #33	ENSGT00550000074802 #34	ENSGT00390000002957 #35	ENSGT00940000155887.b #36	ENSGT00940000156652	ENSGT00940000156864.d	ENSGT00530000063881.a.a
Atlantic herring	MODERN SPECIES	6	slc16a10 (ENSCHAG00000016384)	mfsd4b (ENSCHAG00000016397)	REV3L (ENSCHAG00000016422)	ENSCHAG00000016494	fynb (ENSCHAG00000016571)	HDAC2 (ENSCHAG00000018215)	marcksa (ENSCHAG00000018501)	lama4 (ENSCHAG00000018566)	tube1 (ENSCHAG00000020558)	ccn6 (ENSCHAG00000020693)	HS3ST5 (ENSCHAG00000020819)	FRK (ENSCHAG00000020829)	nt5dc1 (ENSCHAG00000020849)	COL10A1 (ENSCHAG00000021020)	dse (ENSCHAG00000021023)	NDUFAF4 (ENSCHAG00000021029) #22	GPR63 (ENSCHAG00000021032) #23	ufl1 (ENSCHAG00000021051) #25	FUT9 (ENSCHAG00000021372) #26	epha7 (ENSCHAG00000021393)	map3k7 (ENSCHAG00000021765) #29	BACH2 (ENSCHAG00000022221) #30	GJA10 (ENSCHAG00000022263) #31	casp8ap2 (ENSCHAG00000022278) #33	MDN1 (ENSCHAG00000022353) #34	LYRM2 (ENSCHAG00000023161) #35	ankrd6b (ENSCHAG00000023194) #36	GABRR2 (ENSCHAG00000023825)	ube2j1 (ENSCHAG00000023846)	kcnk13b (ENSCHAG00000023853)	ENSCHAG00000023864
Denticle herring	MODERN SPECIES	5	ccn6 (ENSDCDG00000023599)	tube1 (ENSDCDG00000023526)	lama4 (ENSDCDG00000021226)	marcksa (ENSDCDG00000021180)	HDAC2 (ENSDCDG00000021144)	ENSDCDG00000021140	HS3ST5 (ENSDCDG00000021138)	FRK (ENSDCDG00000021133)	COL10A1 (ENSDCDG00000021132)	nt5dc1 (ENSDCDG00000021105)	dse (ENSDCDG00000021102)	ENSDCDG00000021096	ENSDCDG00000021089	ENSDCDG00000021087	ENSDCDG00000021085	NDUFAF4 (ENSDCDG00000021083) #22	GPR63 (ENSDCDG00000021082) #23	ufl1 (ENSDCDG00000021056) #25	FUT9 (ENSDCDG00000021050) #26	ENSDCDG00000021045	epha7 (ENSDCDG00000019788)	map3k7 (ENSDCDG00000019660) #29	BACH2 (ENSDCDG00000019646) #30	GJA10 (ENSDCDG00000019642) #31	ENSDCDG00000019640 #32	casp8ap2 (ENSDCDG00000023769) #33	ptrhd1 (ENSDCDG00000023762)	LYRM2 (ENSDCDG00000023761) #35	ankrd6b (ENSDCDG00000023754) #36	ube2j1 (ENSDCDG00000023753)	GABRR2 (ENSDCDG00000023600)
Otophysi	ANCESTRAL SPECIES	55	ENSGT00940000170463	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000164843.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26
Characiphysae	ANCESTRAL SPECIES	145	ENSGT00940000156226	ENSGT00940000170463	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26
Characiphysae_b	ANCESTRAL SPECIES	97	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000155095.j #26
Characoidei	ANCESTRAL SPECIES	89	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00940000155462.`b.b	ENSGT00940000160119	ENSGT00940000155723	ENSGT00940000165424.a.a	ENSGT00730000111419.a	ENSGT00940000155725	ENSGT00940000158991	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25
Mexicana tetra	MODERN SPECIES	18	si:dkey-119m7.4 (ENSAMXG00000033550)	ccn6 (ENSAMXG00000042271)	tube1 (ENSAMXG00000014226)	ENSAMXG00000030992	lama4 (ENSAMXG00000014261)	marcksa (ENSAMXG00000034538)	ENSAMXG00000032323	HDAC2 (ENSAMXG00000014325)	HS3ST5 (ENSAMXG00000014338)	FRK (ENSAMXG00000041389)	FRK (ENSAMXG00000034064)	ENSAMXG00000032943	ENSAMXG00000035187	nt5dc1 (ENSAMXG00000003910)	dse (ENSAMXG00000003932)	ENSAMXG00000044045 #22	GPR63 (ENSAMXG00000025575) #23	ufl1 (ENSAMXG00000031423) #25	ercc6l (ENSAMXG00000004780)	ENSAMXG00000004781	rnf128a (ENSAMXG00000004783)	tbc1d8b (ENSAMXG00000004784)	gja2 (ENSAMXG00000004785)	gjb1a (ENSAMXG00000033103)	mtmr2 (ENSAMXG00000004788)	fam76b (ENSAMXG00000038899)	cwc15 (ENSAMXG00000007538)	acsl4b (ENSAMXG00000007542)	stag2a (ENSAMXG00000007550)	ENSAMXG00000041092	ENSAMXG00000007559
Red-bellied piranha	MODERN SPECIES	1680															dse (ENSPNAG00000023021)	NDUFAF4 (ENSPNAG00000023040) #22	GPR63 (ENSPNAG00000023053) #23	ufl1 (ENSPNAG00000023127) #25
Electric eel	MODERN SPECIES	857									marcksa (ENSEEEG00000006927)	HDAC2 (ENSEEEG00000005962)	HS3ST5 (ENSEEEG00000005891)	FRK (ENSEEEG00000005550)	ENSEEEG00000005503	nt5dc1 (ENSEEEG00000005502)	dse (ENSEEEG00000005499)	NDUFAF4 (ENSEEEG00000005498) #22	GPR63 (ENSEEEG00000005497) #23	ufl1 (ENSEEEG00000005485) #25	FUT9 (ENSEEEG00000005478) #26
Channel catfish	MODERN SPECIES	11	ENSIPUG00000016425	traf3ip2 (ENSIPUG00000016433)	fynb (ENSIPUG00000016461)	ENSIPUG00000016540	fez2b (ENSIPUG00000016554)	ENSIPUG00000001502	wdr26b (ENSIPUG00000001516)	ENSIPUG00000001565	marcks (ENSIPUG00000001623)	HDAC2 (ENSIPUG00000001578)	HS3ST5 (ENSIPUG00000001627)	FRK (ENSIPUG00000001638)	nt5dc1 (ENSIPUG00000001644)	COL10A1 (ENSIPUG00000001660)	dse (ENSIPUG00000001662)	ndufaf4 (ENSIPUG00000001666) #22	gpr63 (ENSIPUG00000001674) #23	ENSIPUG00000001678	ufl1 (ENSIPUG00000001690) #25	ENSIPUG00000001707	ENSIPUG00000001717	ENSIPUG00000001739	ENSIPUG00000001744	ENSIPUG00000001750	ENSIPUG00000001755	ENSIPUG00000001759	ENSIPUG00000001762	ENSIPUG00000001773
Cyprinoidei	ANCESTRAL SPECIES	202											ENSGT00730000111419.a	ENSGT00940000165424.a.a	ENSGT00940000155723	ENSGT00940000160119	ENSGT00940000155462.`b.b	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a #23	ENSGT00390000002112 #25	ENSGT00940000156987	ENSGT00940000154317.a.b.b	ENSGT00940000155676	ENSGT00390000006522.b
Cyprininae	ANCESTRAL SPECIES	259	ENSGT00940000158752.h.f.b	ENSGT00940000157058.k.b	ENSGT00940000156521.b.u	ENSGT00940000164935.b.k.a	ENSGT00940000155656.w	ENSGT00390000001588	ENSGT00390000006395	ENSGT00730000111419.a.c	ENSGT00940000165424.a.a.a.a	ENSGT00940000155723	ENSGT00940000160119	ENSGT00940000164843.b.g.a	ENSGT00940000155462.`b.b.b	ENSGT00940000164843.b.g.b	ENSGT00940000155462.`b.b.a	ENSGT00390000001627 #22	ENSGT00950000183001.a.b.a.a #23	ENSGT00390000002112.a #25	ENSGT00390000006522.b.j	ENSGT00940000154317.a.b.b.b	ENSGT00940000155676.g	ENSGT00940000156987.c	ENSGT00940000158991	ENSGT00940000154790.a.a.b.g.a	ENSGT00940000156560.h	ENSGT00940000165510	ENSGT00940000166379.d	ENSGT00940000155724.r.c	ENSGT00940000156078.d.b	ENSGT00530000063503.a.b.g.a.b	ENSGT00390000013856
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	12	REV3L (ENSCARG00000025595)	mfsd4b (ENSCARG00000025673)	AKT1 (ENSCARG00000025713)	ENSCARG00000027378	ENSCARG00000027457	spint1b (ENSCARG00000027492)	rps6kc1 (ENSCARG00000027518)	ndufaf7 (ENSCARG00000027565)	cebpz (ENSCARG00000027674)	marcksa (ENSCARG00000027739)	lama4 (ENSCARG00000027968)	tube1 (ENSCARG00000036807)	ccn6 (ENSCARG00000036922)	si:dkey-119m7.4 (ENSCARG00000036956)	fynb (ENSCARG00000036984)	NDUFAF4 (ENSCARG00000037313) #22	GPR63 (ENSCARG00000037322) #23	ufl1 (ENSCARG00000037382) #25	dse (ENSCARG00000039511)	nt5dc1 (ENSCARG00000039529)	COL10A1 (ENSCARG00000040127)	FRK (ENSCARG00000040135)	HS3ST5 (ENSCARG00000040172)	ENSCARG00000040180	kcnk2b (ENSCARG00000040189)	nrl (ENSCARG00000040209)	SENP6 (ENSCARG00000040225)	myo6a (ENSCARG00000003683)	ENSCARG00000003728	nt5e (ENSCARG00000003735)	snx14 (ENSCARG00000003771)
Goldfish	MODERN SPECIES	39														marcksa (ENSCARG00000058272)	fynb (ENSCARG00000058158)	ENSCARG00000058089 #22	GPR63 (ENSCARG00000058082) #23	dse (ENSCARG00000058071)	ENSCARG00000058062	COL10A1 (ENSCARG00000058052)	nt5dc1 (ENSCARG00000057982)	FRK (ENSCARG00000057792)	ENSCARG00000057741	smyd2b (ENSCARG00000057617)	ENSCARG00000057602	ENSCARG00000057593	nrl (ENSCARG00000057581)	ENSCARG00000057574	map3k5 (ENSCARG00000057161)	ppil4 (ENSCARG00000056648)	amd1 (ENSCARG00000056360)
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	345														ENSGT00940000164843.b.g.b	ENSGT00940000155462.`b.b.a	ENSGT00390000001627.o #22	ENSGT00950000183001.a.b.a.a #23	ENSGT00390000002112.a #25	ENSGT00390000006522.b.j	ENSGT00940000155676.h	ENSGT00940000154317.a.b.b.b	ENSGT00940000155676.g	ENSGT00940000156987.c	ENSGT00940000158991	ENSGT00940000154790.a.a.b.g.a	ENSGT00940000156560.h.a	ENSGT00940000165510	ENSGT00940000166379.d	ENSGT00940000155724.r.c	ENSGT00940000156078.d.b	ENSGT00530000063503.a.b.g.a.b
Common carp reference	MODERN SPECIES	34	ENSCCRG00000013854	ENSCCRG00000014213	ENSCCRG00000068780	ENSCCRG00000068016	ENSCCRG00000037534	spint1b (ENSCCRG00000071651)	rps6kc1 (ENSCCRG00000016042)	ndufaf7 (ENSCCRG00000050493)	cebpz (ENSCCRG00000050486)	marcksa (ENSCCRG00000035694)	lama4 (ENSCCRG00000033581)	tube1 (ENSCCRG00000037750)	ccn6 (ENSCCRG00000003023)	ENSCCRG00000015289	fynb (ENSCCRG00000015327)	NDUFAF4 (ENSCCRG00000015546) #22	GPR63 (ENSCCRG00000015550) #23	ufl1 (ENSCCRG00000079835) #25	ENSCCRG00000027697	ENSCCRG00000073500	COL10A1 (ENSCCRG00000074688)	ENSCCRG00000040581	ENSCCRG00000070369	ENSCCRG00000059646	ENSCCRG00000056967	ENSCCRG00000080108	ENSCCRG00000053911	kcnk2b (ENSCCRG00000057872)	ENSCCRG00000054712	nrl (ENSCCRG00000002835)	SENP6 (ENSCCRG00000065270)
Golden-line barbel	MODERN SPECIES	1000	ENSSGRG00000039561	AKT1 (ENSSGRG00000038409)	ENSSGRG00000038396	spint1b (ENSSGRG00000038386)	rps6kc1 (ENSSGRG00000038337)	ndufaf7 (ENSSGRG00000038325)	cebpz (ENSSGRG00000038318)	marcksa (ENSSGRG00000038311)	ENSSGRG00000038309	lama4 (ENSSGRG00000038290)	TUBE1 (ENSSGRG00000038286)	TUBE1 (ENSSGRG00000038284)	ccn6 (ENSSGRG00000038283)	ENSSGRG00000038282	fynb (ENSSGRG00000038130)	NDUFAF4 (ENSSGRG00000038124) #22	GPR63 (ENSSGRG00000038123) #23	ufl1 (ENSSGRG00000037836) #25	dse (ENSSGRG00000037820)	COL10A1 (ENSSGRG00000037819)	nt5dc1 (ENSSGRG00000037817)	FRK (ENSSGRG00000037796)
Cyprininae_a	ANCESTRAL SPECIES	408		ENSGT00940000156226.k	ENSGT00530000063320.B	ENSGT00940000158752.h.f.b	ENSGT00940000157058.k.b	ENSGT00940000164935.b.k.a	ENSGT00940000155656.w	ENSGT00390000001588	ENSGT00390000006395	ENSGT00730000111419.a.c	ENSGT00940000165424.a.a.a.a	ENSGT00940000155723	ENSGT00940000160119	ENSGT00940000164843.b.g.a	ENSGT00940000155462.`b.b.b	ENSGT00390000001627.p #22	ENSGT00950000183001.a.b.a.b #23	ENSGT00390000002112.b #25	ENSGT00390000006522.b.i	ENSGT00940000154317.a.b.b.a	ENSGT00940000156987.d	ENSGT00940000164115.C.a.a.a	ENSGT00940000166832.a	ENSGT00940000156560.h.b
Golden-line barbel	MODERN SPECIES	344											TUBE1 (ENSSGRG00000053017)	ccn6 (ENSSGRG00000053016)	ENSSGRG00000053015	ENSSGRG00000053014	fynb (ENSSGRG00000053010)	NDUFAF4 (ENSSGRG00000053009) #22	GPR63 (ENSSGRG00000053008) #23	ufl1 (ENSSGRG00000053006) #25	dse (ENSSGRG00000053005)	COL10A1 (ENSSGRG00000053004)	nt5dc1 (ENSSGRG00000052999)	FRK (ENSSGRG00000052998)	HS3ST5 (ENSSGRG00000052997)	rsph14 (ENSSGRG00000052992)	lsm1 (ENSSGRG00000052989)	ENSSGRG00000052899	star (ENSSGRG00000052877)	ELMOD3 (ENSSGRG00000052868)	AEBP1 (ENSSGRG00000052853)	ENSSGRG00000052852	ENSSGRG00000052851
Zebrafish	MODERN SPECIES	12	ypel5 (ENSDARG00000088929)	slc16a10 (ENSDARG00000020984)	rpf2 (ENSDARG00000043960)	si:ch211-241j12.3 (ENSDARG00000043963)	ENSDARG00000102660	smim8 (ENSDARG00000071040)	gjb7 (ENSDARG00000071042)	znf292b (ENSDARG00000043973)	lama4 (ENSDARG00000020785)	TUBE1 (ENSDARG00000043982)	tube1 (ENSDARG00000096620)	ccn6 (ENSDARG00000071048)	si:dkey-119m7.4 (ENSDARG00000071049)	ENSDARG00000096654	fynb (ENSDARG00000025319)	NDUFAF4 (ENSDARG00000077859) #22	GPR63 (ENSDARG00000074540) #23	ufl1 (ENSDARG00000007496) #25	FRK (ENSDARG00000027807)	nt5dc1 (ENSDARG00000006797)	COL10A1 (ENSDARG00000101535)	ENSDARG00000111552	dse (ENSDARG00000017988)	ENSDARG00000069661	smyd2b (ENSDARG00000005629)	kcnk2b (ENSDARG00000007151)	ENSDARG00000014232	nrl (ENSDARG00000100466)	ENSDARG00000102923	myo6a (ENSDARG00000044016)	ENSDARG00000077187
Spotted gar	MODERN SPECIES	647	ENSLOCG00000016988	ENSLOCG00000018016	fynb (ENSLOCG00000016987)	ENSLOCG00000016985	ccn6 (ENSLOCG00000016984)	tube1 (ENSLOCG00000016981)	LAMA4 (ENSLOCG00000016979)	marcksa (ENSLOCG00000016978)	HDAC2 (ENSLOCG00000016977)	HS3ST5 (ENSLOCG00000016976)	FRK (ENSLOCG00000016973)	ENSLOCG00000016972	col10a1a (ENSLOCG00000016970)	nt5dc1 (ENSLOCG00000016969)	dse (ENSLOCG00000016968)	ENSLOCG00000018015 #22	ENSLOCG00000016967	GPR63 (ENSLOCG00000016966) #23	ENSLOCG00000016965	fhl5 (ENSLOCG00000016962) #24	ufl1 (ENSLOCG00000016960) #25	FUT9 (ENSLOCG00000018014) #26	manea (ENSLOCG00000016959) #27	EPHA7 (ENSLOCG00000016956) #28	ENSLOCG00000016955	map3k7 (ENSLOCG00000016953) #29	BACH2 (ENSLOCG00000016952) #30	gja10a (ENSLOCG00000016951) #31	casp8ap2 (ENSLOCG00000016949) #33	ENSLOCG00000016948 #34	ENSLOCG00000016947 #34
Reedfish	MODERN SPECIES	11	REV3L (ENSECRG00000006193)	ENSECRG00000006164	ENSECRG00000006110	fynb (ENSECRG00000006091)	ccn6 (ENSECRG00000005939)	tube1 (ENSECRG00000005898)	LAMA4 (ENSECRG00000004788)	marcksa (ENSECRG00000004573)	HDAC2 (ENSECRG00000004542)	HS3ST5 (ENSECRG00000004527)	FRK (ENSECRG00000004132)	ENSECRG00000004061	col10a1a (ENSECRG00000004051)	nt5dc1 (ENSECRG00000003803)	dse (ENSECRG00000003776)	NDUFAF4 (ENSECRG00000003771) #22	GPR63 (ENSECRG00000003767) #23	fhl5 (ENSECRG00000003760) #24	ufl1 (ENSECRG00000003751) #25	fut9a (ENSECRG00000003744) #26	manea (ENSECRG00000003736) #27	EPHA7 (ENSECRG00000003713) #28	ENSECRG00000003696	ENSECRG00000003692	map3k7 (ENSECRG00000003677) #29	BACH2 (ENSECRG00000003666) #30	ankrd6b (ENSECRG00000003656) #36	rragd (ENSECRG00000003644) #37	ube2j1 (ENSECRG00000003639)	gabrr2a (ENSECRG00000003631)	gabrr1 (ENSECRG00000003623)
Elephant shark	MODERN SPECIES	1511	SNAP91 (ENSCMIG00000015750)	MCHR2 (ENSCMIG00000015655) #9	prdm13 (ENSCMIG00000015654) #10	ngs (ENSCMIG00000015651)	ccnc (ENSCMIG00000015645) #11	ENSCMIG00000015637 #12	usp45 (ENSCMIG00000015574) #13	ENSCMIG00000015536	ENSCMIG00000015531 #15	ENSCMIG00000015527 #15	FAXC (ENSCMIG00000015523) #16	fbxl4 (ENSCMIG00000015520) #17	ENSCMIG00000015519	mms22l (ENSCMIG00000015508) #19	klhl32 (ENSCMIG00000015494) #21	NDUFAF4 (ENSCMIG00000015492) #22	GPR63 (ENSCMIG00000015491) #23	fhl5 (ENSCMIG00000015489) #24	ufl1 (ENSCMIG00000015399) #25	ENSCMIG00000015367	ENSCMIG00000015366 #26	FUT9 (ENSCMIG00000015365) #26	manea (ENSCMIG00000015362) #27	ENSCMIG00000015360	EPHA7 (ENSCMIG00000015303) #28	ENSCMIG00000015271	map3k7 (ENSCMIG00000015230) #29	ENSCMIG00000015212 #30	ENSCMIG00000015210	gja10a (ENSCMIG00000015208) #31	ENSCMIG00000015205
Ciona	ANCESTRAL SPECIES	554															ENSGT01100000267125	ENSGT00390000001627 #22	ENSGT00940000153724.A
Ciona savignyi	MODERN SPECIES	307	ENSCSAVG00000003540	ENSCSAVG00000003533	ENSCSAVG00000003531	ENSCSAVG00000003519	ENSCSAVG00000003513	ENSCSAVG00000003511	ENSCSAVG00000003507	ENSCSAVG00000003475	ENSCSAVG00000003457	ENSCSAVG00000003454	ENSCSAVG00000003452	ENSCSAVG00000003450	ENSCSAVG00000003448	ENSCSAVG00000003445	ENSCSAVG00000003441	ENSCSAVG00000003434 #22	ENSCSAVG00000003263	ENSCSAVG00000003224	ENSCSAVG00000003223	ENSCSAVG00000003222	ENSCSAVG00000003221	ENSCSAVG00000003219	ENSCSAVG00000003217	ENSCSAVG00000003216	ENSCSAVG00000003214	ENSCSAVG00000003213	ENSCSAVG00000003183	ENSCSAVG00000003142	ENSCSAVG00000003137	ENSCSAVG00000003126
Ciona intestinalis	MODERN SPECIES	10	ENSCING00000002530	ENSCING00000020976	ENSCING00000023336	ENSCING00000002540	ENSCING00000002543	ENSCING00000002546	ENSCING00000015308	ENSCING00000015311	ENSCING00000015318	ENSCING00000015314	ENSCING00000002551	ENSCING00000015368	ENSCING00000022603	ENSCING00000002555	ENSCING00000010753	ENSCING00000002561 #22	ENSCING00000002559	ENSCING00000015564	ENSCING00000001972	ENSCING00000018055	ENSCING00000001976	ENSCING00000022510	ENSCING00000015724	ENSCING00000001996	ENSCING00000001999	ENSCING00000002003	ENSCING00000002006	ENSCING00000002007	ENSCING00000015778	ENSCING00000020546	ENSCING00000015787
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000001627 #22
Fruitfly	MODERN SPECIES	19	CAH7 (FBgn0037788)	Fmr1 (FBgn0028734)	Alp13 (FBgn0037786)	nerfin-2 (FBgn0041105)	CG33784 (FBgn0053784)	CG33783 (FBgn0053783)	CG33631 (FBgn0053631)	CG33630 (FBgn0053630)	Npc2c (FBgn0037783)	Npc2d (FBgn0037782)	Npc2e (FBgn0051410)	Fancl (FBgn0037781)	ohgt (FBgn0037780)	CG12811 (FBgn0037779)	mtTFB2 (FBgn0037778)	CG11722 (FBgn0037777) #22	CG3909 (FBgn0027524)	CG31407 (FBgn0051407)	Mical (FBgn0053208)	CG5359 (FBgn0037773)	Spn85F (FBgn0037772)	Gr85a (FBgn0045473)	Art4 (FBgn0037770)	CG46467 (FBgn0287598)	Glut4EF (FBgn0267336)	Teh1 (FBgn0037766)	CG34302 (FBgn0085331)	CG42857 (FBgn0262104)	CG9458 (FBgn0037765)	CG9459 (FBgn0037764)	CG16904 (FBgn0037763)
Caenorhabditis elegans	MODERN SPECIES	3	B0035.21 (WBGene00235095)	his-45 (WBGene00001919)	his-46 (WBGene00001920)	his-48 (WBGene00001922)	his-47 (WBGene00001921)	edg-1 (WBGene00007109)	B0035.18 (WBGene00044290)	gspd-1 (WBGene00007108)	pfd-4 (WBGene00007107)	B0035.22 (WBGene00303031)	B0035.3 (WBGene00007106)	dnj-2 (WBGene00001020)	znf-207 (WBGene00007105)	B0035.13 (WBGene00007112)	dnj-1 (WBGene00001019)	B0035.15 (WBGene00007113) #22	mttu-1 (WBGene00007114)	F54D1.6 (WBGene00010047)	gtl-2 (WBGene00001796)	nhr-7 (WBGene00003606)	col-127 (WBGene00000701)	col-126 (WBGene00000700)	F54D1.1 (WBGene00010046)	C05C12.5 (WBGene00007337)	C05C12.1 (WBGene00007335)	gtl-1 (WBGene00001795)	C05C12.4 (WBGene00007336)	C05C12.6 (WBGene00007338)	best-7 (WBGene00007808)	col-125 (WBGene00000699)	C29F4.3 (WBGene00007809)