Murinae	ANCESTRAL SPECIES	4	ENSGT00530000063722.a #7	ENSGT00390000004708 #8	ENSGT00390000001810 #9	ENSGT00940000155871 #10	ENSGT00910000144343 #11	ENSGT00950000182825.B #12	ENSGT00950000182839.B.a.a #13	ENSGT00940000161014 #14	ENSGT00390000007747 #15	ENSGT00940000156039 #16	ENSGT00390000002793 #17	ENSGT00390000018003.b #18	ENSGT00390000008702 #19	ENSGT00390000014557 #20	ENSGT00940000153544.b #21	ENSGT00940000160423 #22	ENSGT00940000153380.A #23	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #24	ENSGT00390000005178 #26	ENSGT00390000003443 #27	ENSGT00940000153377.C #28	ENSGT00940000160124 #29	ENSGT00390000004933 #30	ENSGT00390000015899 #31	ENSGT00390000006367.c #32	ENSGT00530000063113.A #33	ENSGT00940000158027 #34	ENSGT00940000158848 #35	ENSGT00940000153438.b #36	ENSGT00390000006485.c #37
Mus	ANCESTRAL SPECIES	12	ENSGT00530000063722.a #7	ENSGT00390000004708 #8	ENSGT00390000001810 #9	ENSGT00940000155871 #10	ENSGT00910000144343 #11	ENSGT00950000182825.B #12	ENSGT00950000182839.B.a.a #13	ENSGT00940000161014 #14	ENSGT00390000007747 #15	ENSGT00940000156039 #16	ENSGT00390000002793 #17	ENSGT00390000018003.b #18	ENSGT00390000008702 #19	ENSGT00390000014557 #20	ENSGT00940000153544.b #21	ENSGT00940000160423 #22	ENSGT00940000153380.A #23	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #24	ENSGT00390000005178 #26	ENSGT00390000003443 #27	ENSGT00940000153377.C #28	ENSGT00940000160124 #29	ENSGT00390000004933 #30	ENSGT00390000015899 #31	ENSGT00390000006367.c #32	ENSGT00530000063113.A #33	ENSGT00940000158027 #34	ENSGT00940000158848 #35	ENSGT00940000153438.b #36	ENSGT00390000006485.c #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00530000063722.a #7	ENSGT00390000004708 #8	ENSGT00390000001810 #9	ENSGT00940000155871 #10	ENSGT00910000144343 #11	ENSGT00950000182825.B #12	ENSGT00950000182839.B.a.a #13	ENSGT00940000161014 #14	ENSGT00390000007747 #15	ENSGT00940000156039 #16	ENSGT00390000002793 #17	ENSGT00390000018003.b #18	ENSGT00390000008702 #19	ENSGT00390000014557 #20	ENSGT00940000153544.b #21	ENSGT00940000160423 #22	ENSGT00940000153380.A #23	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #24	ENSGT00390000005178 #26	ENSGT00390000003443 #27	ENSGT00940000153377.C #28	ENSGT00940000160124 #29	ENSGT00390000004933 #30	ENSGT00390000015899 #31	ENSGT00390000006367.c #32	ENSGT00530000063113.A #33	ENSGT00940000158027 #34	ENSGT00940000158848 #35	ENSGT00940000153438.b #36	ENSGT00390000006485.c #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a #7	ENSGT00390000004708 #8	ENSGT00390000001810 #9	ENSGT00940000155871 #10	ENSGT00910000144343 #11	ENSGT00950000182839.B.a.a #13	ENSGT00940000161014 #14	ENSGT00390000007747 #15	ENSGT00940000156039 #16	ENSGT00390000002793 #17	ENSGT00390000018003.b #18	ENSGT00390000008702 #19	ENSGT00390000014557 #20	ENSGT00940000153544.b #21	ENSGT00940000160423 #22	ENSGT00940000153380.A #23	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #24	ENSGT00390000005178 #26	ENSGT00390000003443 #27	ENSGT00940000153377.C #28	ENSGT00940000160124 #29	ENSGT00390000004933 #30	ENSGT00390000015899 #31	ENSGT00390000006367.c #32	ENSGT00530000063113.A #33	ENSGT00940000158027 #34	ENSGT00940000158848 #35	ENSGT00940000153438.b #36	ENSGT00390000006485.c #37
Mouse	MODERN SPECIES	15	Irag2 (ENSMUSG00000030263) #7	Casc1 (ENSMUSG00000043541) #8	Etfrf1 (ENSMUSG00000040370) #9	Kras (ENSMUSG00000030265) #10	Lmntd1 (ENSMUSG00000054966) #11	Tuba3b (ENSMUSG00000067338) #12	Rassf8 (ENSMUSG00000030259) #13	Bhlhe41 (ENSMUSG00000030256) #14	Sspn (ENSMUSG00000030255) #15	Itpr2 (ENSMUSG00000030287) #16	Ints13 (ENSMUSG00000040250) #17	Fgfr1op2 (ENSMUSG00000040242) #18	Tm7sf3 (ENSMUSG00000040234) #19	Med21 (ENSMUSG00000030291) #20	Stk38l (ENSMUSG00000001630) #21	Arntl2 (ENSMUSG00000040187) #22	Smco2 (ENSMUSG00000030292) #23	Ppfibp1 (ENSMUSG00000016487) #24	1700034J05Rik (ENSMUSG00000040163) #25	Rep15 (ENSMUSG00000040121) #26	Mrps35 (ENSMUSG00000040112) #27	Mansc4 (ENSMUSG00000072662) #28	Klhl42 (ENSMUSG00000040102) #29	Pthlh (ENSMUSG00000048776) #30	Ccdc91 (ENSMUSG00000030301) #31	Far2 (ENSMUSG00000030303) #32	Ergic2 (ENSMUSG00000030304) #33	Tmtc1 (ENSMUSG00000030306) #34	Ipo8 (ENSMUSG00000040029) #35	Caprin2 (ENSMUSG00000030309) #36	Sinhcaf (ENSMUSG00000039985) #37
Mus_C	ANCESTRAL SPECIES	29	ENSGT00390000009532.A.d.a	ENSGT00530000063722.a #7	ENSGT00390000004708 #8	ENSGT00390000001810 #9	ENSGT00940000155871 #10	ENSGT00910000144343 #11	ENSGT00950000182839.B.a.a #13	ENSGT00940000161014 #14	ENSGT00390000007747 #15	ENSGT00940000156039 #16	ENSGT00390000002793 #17	ENSGT00390000018003.b #18	ENSGT00390000008702 #19	ENSGT00390000014557 #20	ENSGT00940000153544.b #21	ENSGT00940000160423 #22	ENSGT00940000153380.A #23	ENSGT00390000018322 #25	ENSGT01050000244951.a.a #24	ENSGT00390000005178 #26	ENSGT00390000003443 #27	ENSGT00940000153377.C #28	ENSGT00940000160124 #29	ENSGT00390000004933 #30	ENSGT00390000015899 #31	ENSGT00390000006367.c #32	ENSGT00530000063113.A #33	ENSGT00390000005569.x.a.b.a	ENSGT00940000158027 #34	ENSGT00940000158848 #35	ENSGT00940000153438.b #36
Steppe mouse	MODERN SPECIES	3307	Irag2 (ENSMSIG00000015111) #7	Etfrf1 (ENSMSIG00000015086) #9	Casc1 (ENSMSIG00000014840) #8	Lmntd1 (ENSMSIG00000014721) #11	ENSMSIG00000014710 ##12	Rassf8 (ENSMSIG00000014654) #13	Bhlhe41 (ENSMSIG00000014616) #14	Sspn (ENSMSIG00000014591) #15	Itpr2 (ENSMSIG00000014319) #16	Ints13 (ENSMSIG00000014265) #17	Fgfr1op2 (ENSMSIG00000014213) #18	Tm7sf3 (ENSMSIG00000014187) #19	Med21 (ENSMSIG00000014163) #20	Stk38l (ENSMSIG00000014111) #21	ENSMSIG00000014103	Arntl2 (ENSMSIG00000013962) #22	ENSMSIG00000013947 #23	1700034J05Rik (ENSMSIG00000013928) #25	Ppfibp1 (ENSMSIG00000013677) #24	Rep15 (ENSMSIG00000013652) #26	Mrps35 (ENSMSIG00000013626) #27	Mansc4 (ENSMSIG00000013606) #28	ENSMSIG00000013586 #29	Pthlh (ENSMSIG00000013526) #30	ENSMSIG00000013505	Ccdc91 (ENSMSIG00000013458) #31	Far2 (ENSMSIG00000013399) #32	Ergic2 (ENSMSIG00000013358) #33	ENSMSIG00000013347	Tmtc1 (ENSMSIG00000013316) #34
spretus	MODERN SPECIES	15	Irag2 (MGP_SPRETEiJ_G0030099) #7	Casc1 (MGP_SPRETEiJ_G0030100) #8	Etfrf1 (MGP_SPRETEiJ_G0030101) #9	Kras (MGP_SPRETEiJ_G0030102) #10	Lmntd1 (MGP_SPRETEiJ_G0030103) #11	MGP_SPRETEiJ_G0030104 #12	Rassf8 (MGP_SPRETEiJ_G0030105) #13	Bhlhe41 (MGP_SPRETEiJ_G0030106) #14	Sspn (MGP_SPRETEiJ_G0030107) #15	Itpr2 (MGP_SPRETEiJ_G0030108) #16	Ints13 (MGP_SPRETEiJ_G0030109) #17	Fgfr1op2 (MGP_SPRETEiJ_G0030110) #18	Tm7sf3 (MGP_SPRETEiJ_G0030111) #19	Med21 (MGP_SPRETEiJ_G0030112) #20	Stk38l (MGP_SPRETEiJ_G0030113) #21	MGP_SPRETEiJ_G0030114 #22	MGP_SPRETEiJ_G0030115 #23	Ppfibp1 (MGP_SPRETEiJ_G0030116) #24	1700034J05Rik (MGP_SPRETEiJ_G0030117) #25	Rep15 (MGP_SPRETEiJ_G0030118) #26	Mrps35 (MGP_SPRETEiJ_G0030119) #27	Mansc4 (MGP_SPRETEiJ_G0030120) #28	Klhl42 (MGP_SPRETEiJ_G0030121) #29	Pthlh (MGP_SPRETEiJ_G0030122) #30	Ccdc91 (MGP_SPRETEiJ_G0030123) #31	Far2 (MGP_SPRETEiJ_G0030124) #32	Ergic2 (MGP_SPRETEiJ_G0030125) #33	Tmtc1 (MGP_SPRETEiJ_G0030126) #34	Ipo8 (MGP_SPRETEiJ_G0030127) #35	Caprin2 (MGP_SPRETEiJ_G0030128) #36	MGP_SPRETEiJ_G0030129 #37
Ryukyu mouse	MODERN SPECIES	15	Irag2 (MGP_CAROLIEiJ_G0029044) #7	Casc1 (MGP_CAROLIEiJ_G0029045) #8	Etfrf1 (MGP_CAROLIEiJ_G0029046) #9	Kras (MGP_CAROLIEiJ_G0029047) #10	Lmntd1 (MGP_CAROLIEiJ_G0029048) #11	MGP_CAROLIEiJ_G0029049 #12	Rassf8 (MGP_CAROLIEiJ_G0029050) #13	Bhlhe41 (MGP_CAROLIEiJ_G0029051) #14	Sspn (MGP_CAROLIEiJ_G0029052) #15	Itpr2 (MGP_CAROLIEiJ_G0029053) #16	Ints13 (MGP_CAROLIEiJ_G0029054) #17	Fgfr1op2 (MGP_CAROLIEiJ_G0029055) #18	Tm7sf3 (MGP_CAROLIEiJ_G0029056) #19	Med21 (MGP_CAROLIEiJ_G0029057) #20	Stk38l (MGP_CAROLIEiJ_G0029058) #21	Arntl2 (MGP_CAROLIEiJ_G0029059) #22	Smco2 (MGP_CAROLIEiJ_G0029060) #23	Ppfibp1 (MGP_CAROLIEiJ_G0029061) #24	1700034J05Rik (MGP_CAROLIEiJ_G0029062) #25	Rep15 (MGP_CAROLIEiJ_G0029063) #26	Mrps35 (MGP_CAROLIEiJ_G0029064) #27	Mansc4 (MGP_CAROLIEiJ_G0029065) #28	Klhl42 (MGP_CAROLIEiJ_G0029066) #29	Pthlh (MGP_CAROLIEiJ_G0029067) #30	Ccdc91 (MGP_CAROLIEiJ_G0029068) #31	Far2 (MGP_CAROLIEiJ_G0029069) #32	Ergic2 (MGP_CAROLIEiJ_G0029070) #33	Tmtc1 (MGP_CAROLIEiJ_G0029071) #34	Ipo8 (MGP_CAROLIEiJ_G0029072) #35	Caprin2 (MGP_CAROLIEiJ_G0029073) #36	MGP_CAROLIEiJ_G0029074 #37
Rat	MODERN SPECIES	14	Irag2 (ENSRNOG00000029308) #7	Dnai7 (ENSRNOG00000027630) #8	Etfrf1 (ENSRNOG00000063524) #9	ENSRNOG00000069406	Lmntd1 (ENSRNOG00000015910) #11	Tuba3a (ENSRNOG00000032967) #12	Rassf8 (ENSRNOG00000015986) #13	Bhlhe41 (ENSRNOG00000048961) #14	Sspn (ENSRNOG00000001807) #15	Itpr2 (ENSRNOG00000001804) #16	Ints13 (ENSRNOG00000001808) #17	Fgfr1op2 (ENSRNOG00000001811) #18	Tm7sf3 (ENSRNOG00000001817) #19	Med21 (ENSRNOG00000001820) #20	Stk38l (ENSRNOG00000001828) #21	Bmal2 (ENSRNOG00000001830) #22	Smco2 (ENSRNOG00000026883) #23	Ppfibp1 (ENSRNOG00000031709) #24	C4h12orf71 (ENSRNOG00000026864) #25	Rep15 (ENSRNOG00000001840) #26	Mrps35 (ENSRNOG00000001842) #27	Mansc4 (ENSRNOG00000036925) #28	Klhl42 (ENSRNOG00000001844) #29	AABR07062539.1 (ENSRNOG00000051667)	Pthlh (ENSRNOG00000069267) #30	Ccdc91 (ENSRNOG00000001847) #31	ENSRNOG00000064845	Far2 (ENSRNOG00000001851) #32	Ergic2 (ENSRNOG00000001852) #33	Tmtc1 (ENSRNOG00000001854) #34	Rps4y2 (ENSRNOG00000031041)