Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00390000011116 #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00940000177512	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00390000011116 #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00940000177512	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00390000011116 #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00940000177512	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
Nile tilapia	MODERN SPECIES	19	FBXO31 (ENSONIG00000014723) #7	banp (ENSONIG00000014721) #8	ENSONIG00000039160 #9	KRAS (ENSONIG00000014717) #10	RASSF8 (ENSONIG00000036802) #11	bhlhe41 (ENSONIG00000014711) #12	sspn (ENSONIG00000014708) #13	ITPR2 (ENSONIG00000014687) #14	plekhg7 (ENSONIG00000014684) #15	EEA1 (ENSONIG00000014683) #16	nudt4a (ENSONIG00000037516) #17	ube2nb (ENSONIG00000029388) #18	ENSONIG00000028383 #19	nr1h4 (ENSONIG00000014678) #20	slc17a8 (ENSONIG00000014674) #21	arntl2 (ENSONIG00000014665) #22	si:ch211-245j22.3 (ENSONIG00000014664) #23	ppfibp1b (ENSONIG00000014653) #24	endouc (ENSONIG00000018441) #25	ENSONIG00000034597 #26	ENSONIG00000012994 #27	ENSONIG00000014640 #28	ENSONIG00000037166 #29	ENSONIG00000038453 #30	ENSONIG00000039960 #31	ENSONIG00000031074 #32	fanci (ENSONIG00000014637) #33	POLG (ENSONIG00000014634) #34	TVP23A (ENSONIG00000014633) #35	RHCG (ENSONIG00000014627) #36	gdpgp1 (ENSONIG00000014626) #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00390000011116 #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00940000177512	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
Lyretail cichlid	MODERN SPECIES	305	FBXO31 (ENSNBRG00000004542) #7	banp (ENSNBRG00000004475) #8	ENSNBRG00000004454 #9	kras (ENSNBRG00000004403) #10	ENSNBRG00000004386 #11	bhlhe41 (ENSNBRG00000004366) #12	sspn (ENSNBRG00000004356) #13	ITPR2 (ENSNBRG00000004131) #14	plekhg7 (ENSNBRG00000004064) #15	EEA1 (ENSNBRG00000003989) #16	nudt4a (ENSNBRG00000003855) #17	ube2nb (ENSNBRG00000003824) #18	ENSNBRG00000003819 #19	nr1h4 (ENSNBRG00000003805) #20	slc17a8 (ENSNBRG00000003762) #21	arntl2 (ENSNBRG00000003699) #22	si:ch211-245j22.3 (ENSNBRG00000003669) #23	ppfibp1b (ENSNBRG00000003489) #24	POLR3B (ENSNBRG00000003392)	rfx4 (ENSNBRG00000003323)	ric8b (ENSNBRG00000003301)	ENSNBRG00000003265	tmem263 (ENSNBRG00000003249)	ENSNBRG00000003184	ENSNBRG00000003093	KLHDC10 (ENSNBRG00000003054)	ENSNBRG00000003028	ENSNBRG00000002807	gnai1 (ENSNBRG00000002767)	MAGI2 (ENSNBRG00000002709)	ergic2 (ENSNBRG00000002649)
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000011116.f #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00940000177512	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
Burton s mouthbrooder	MODERN SPECIES	656	banp (ENSHBUG00000013141) #8	ENSHBUG00000013153 #9	kras (ENSHBUG00000013197) #10	RASSF8 (ENSHBUG00000013259) #11	bhlhe41 (ENSHBUG00000013289) #12	sspn (ENSHBUG00000000390) #13	ITPR2 (ENSHBUG00000000397) #14	ENSHBUG00000013464	plekhg7 (ENSHBUG00000013487) #15	EEA1 (ENSHBUG00000013626) #16	nudt4a (ENSHBUG00000013650) #17	ube2nb (ENSHBUG00000013658) #18	ENSHBUG00000013672 #19	nr1h4 (ENSHBUG00000013734) #20	slc17a8 (ENSHBUG00000013768) #21	arntl2 (ENSHBUG00000013880) #22	si:ch211-245j22.3 (ENSHBUG00000013914) #23	ppfibp1b (ENSHBUG00000014220) #24	endouc (ENSHBUG00000014260) #25
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00390000011116.f #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00940000177512	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
P. nyererei	MODERN SPECIES	373	banp (ENSPNYG00000013881) #8	ENSPNYG00000013862 #9	kras (ENSPNYG00000013814) #10	RASSF8 (ENSPNYG00000013792) #11	bhlhe41 (ENSPNYG00000013779) #12	sspn (ENSPNYG00000013768) #13	ITPR2 (ENSPNYG00000013687) #14	ENSPNYG00000013646	plekhg7 (ENSPNYG00000013616) #15	EEA1 (ENSPNYG00000013590) #16	nudt4a (ENSPNYG00000013580) #17	ube2nb (ENSPNYG00000013567) #18	ENSPNYG00000013559 #19	nr1h4 (ENSPNYG00000013524) #20	slc17a8 (ENSPNYG00000013481) #21	arntl2 (ENSPNYG00000013407) #22	si:ch211-245j22.3 (ENSPNYG00000013366) #23	ppfibp1b (ENSPNYG00000013280) #24	endouc (ENSPNYG00000013255) #25
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00390000001368 #7	ENSGT00390000011116.f #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
Zebra mbuna	MODERN SPECIES	1110	ENSMZEG00005017892 #9	kras (ENSMZEG00005017913) #10	RASSF8 (ENSMZEG00005017923) #11	bhlhe41 (ENSMZEG00005017935) #12	sspn (ENSMZEG00005017940) #13	ITPR2 (ENSMZEG00005017944) #14	ENSMZEG00005017958	ENSMZEG00005017961	plekhg7 (ENSMZEG00005017964) #15	EEA1 (ENSMZEG00005017978) #16	nudt4a (ENSMZEG00005017991) #17	ENSMZEG00005018404 ##18	ENSMZEG00005018867 #19	nr1h4 (ENSMZEG00005018868) #20	slc17a8 (ENSMZEG00005018879) #21	arntl2 (ENSMZEG00005018896) #22	si:ch211-245j22.3 (ENSMZEG00005018910) #23	ppfibp1b (ENSMZEG00005018917) #24	endouc (ENSMZEG00005018957) #25	POLR3B (ENSMZEG00005018987)	rfx4 (ENSMZEG00005019016)	ric8b (ENSMZEG00005019024)	ENSMZEG00005019032	tmem263 (ENSMZEG00005019040)	ENSMZEG00005019048	ENSMZEG00005019067	KLHDC10 (ENSMZEG00005019079)	ENSMZEG00005019092	ENSMZEG00005019121	ENSMZEG00005019144	gnai1 (ENSMZEG00005019146)
Eastern happy	MODERN SPECIES	19	FBXO31 (ENSACLG00000027538) #7	banp (ENSACLG00000027529) #8	ENSACLG00000027520 #9	kras (ENSACLG00000027515) #10	RASSF8 (ENSACLG00000027504) #11	bhlhe41 (ENSACLG00000027502) #12	sspn (ENSACLG00000027500) #13	ITPR2 (ENSACLG00000027462) #14	plekhg7 (ENSACLG00000027445) #15	EEA1 (ENSACLG00000027421) #16	nudt4a (ENSACLG00000027416) #17	ube2nb (ENSACLG00000027408) #18	ENSACLG00000027403 #19	nr1h4 (ENSACLG00000027394) #20	slc17a8 (ENSACLG00000027382) #21	arntl2 (ENSACLG00000027363) #22	si:ch211-245j22.3 (ENSACLG00000027354) #23	ppfibp1b (ENSACLG00000027329) #24	endouc (ENSACLG00000027310) #25	ENSACLG00000027308	ENSACLG00000027293	ENSACLG00000027291	POLR3B (ENSACLG00000027243)	rfx4 (ENSACLG00000027213)	ric8b (ENSACLG00000027196)	ENSACLG00000027185	tmem263 (ENSACLG00000027181)	ENSACLG00000027160	ENSACLG00000027143	KLHDC10 (ENSACLG00000027123)	ENSACLG00000027098
Midas cichlid	MODERN SPECIES	1236																arntl2 (ENSACIG00000006116) #22	si:ch211-245j22.3 (ENSACIG00000006098) #23	ENSACIG00000006012 #24	endouc (ENSACIG00000005954) #25	POLR3B (ENSACIG00000005894)	rfx4 (ENSACIG00000005854)	ric8b (ENSACIG00000005744)	ENSACIG00000005723	tmem263 (ENSACIG00000005718)	ENSACIG00000005697	ENSACIG00000005656	KLHDC10 (ENSACIG00000005634)	ENSACIG00000005614	ENSACIG00000005477	ENSACIG00000005464	gnai1 (ENSACIG00000005446)
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00390000011116 #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00940000177512	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b	ENSGT00940000153567.a.a.b.a
Pomacentridae_A	ANCESTRAL SPECIES	27	ENSGT00390000001368 #7	ENSGT00390000011116 #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b.r	ENSGT00940000163253.b.c.b.b.q	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b
Amphiprion	ANCESTRAL SPECIES	21	ENSGT00390000001368 #7	ENSGT00390000011116 #8	ENSGT00530000065415 #9	ENSGT00940000155871 #10	ENSGT00950000182839.B.a.a.l #11	ENSGT00940000161014 #12	ENSGT00390000007747 #13	ENSGT00940000156039 #14	ENSGT00510000046843.b #15	ENSGT00940000156910 #16	ENSGT00940000155210.a.a #17	ENSGT00540000070023.c.b.i #18	ENSGT00940000161832.b #19	ENSGT00940000158037 #20	ENSGT00940000158187 #21	ENSGT00940000160423.a #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a #24	ENSGT00530000063825.A.c.f #25	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00940000165765	ENSGT00390000013899.a.a	ENSGT00940000163253.b.c.b.b.r	ENSGT00940000163253.b.c.b.b.q	ENSGT00390000016897.d	ENSGT00940000155977.f	ENSGT00390000004852.a.a	ENSGT00950000182981.b.f.a.c.b	ENSGT00940000158940.b
Orange clownfish	MODERN SPECIES	18	FBXO31 (ENSAPEG00000007817) #7	banp (ENSAPEG00000007735) #8	ENSAPEG00000007692 #9	kras (ENSAPEG00000007675) #10	RASSF8 (ENSAPEG00000007634) #11	bhlhe41 (ENSAPEG00000007600) #12	sspn (ENSAPEG00000007590) #13	ITPR2 (ENSAPEG00000007411) #14	plekhg7 (ENSAPEG00000007384) #15	EEA1 (ENSAPEG00000007299) #16	nudt4a (ENSAPEG00000007257) #17	ube2nb (ENSAPEG00000007236) #18	ENSAPEG00000007218 #19	nr1h4 (ENSAPEG00000007163) #20	slc17a8 (ENSAPEG00000007105) #21	arntl2 (ENSAPEG00000007036) #22	si:ch211-245j22.3 (ENSAPEG00000007014) #23	ppfibp1b (ENSAPEG00000006946) #24	endouc (ENSAPEG00000006926) #25	POLR3B (ENSAPEG00000006829)	rfx4 (ENSAPEG00000006759)	ric8b (ENSAPEG00000006726)	ENSAPEG00000006691	tmem263 (ENSAPEG00000006686)	ENSAPEG00000006631	ENSAPEG00000006029	ENSAPEG00000005929	KLHDC10 (ENSAPEG00000005873)	ENSAPEG00000005824	ENSAPEG00000005742	ENSAPEG00000005719
Clown anemonefish	MODERN SPECIES	2903																arntl2 (ENSAOCG00000010359) #22	si:ch211-245j22.3 (ENSAOCG00000010382) #23	ppfibp1b (ENSAOCG00000010466) #24	endouc (ENSAOCG00000010512) #25	POLR3B (ENSAOCG00000010619)	rfx4 (ENSAOCG00000010687)
Spiny chromis	MODERN SPECIES	410		ENSAPOG00000017760	ENSAPOG00000017775	ENSAPOG00000017851	ENSAPOG00000017905	KLHDC10 (ENSAPOG00000000490)	ENSAPOG00000018034	ENSAPOG00000018090	tmem263 (ENSAPOG00000018102)	ENSAPOG00000018113	ric8b (ENSAPOG00000018137)	rfx4 (ENSAPOG00000000986)	POLR3B (ENSAPOG00000018360)	endouc (ENSAPOG00000001027) #25	ppfibp1b (ENSAPOG00000018516) #24	arntl2 (ENSAPOG00000018600) #22	si:ch211-245j22.3 (ENSAPOG00000018633) #23	slc17a8 (ENSAPOG00000018705) #21	nr1h4 (ENSAPOG00000018756) #20	ENSAPOG00000018765 #19	ube2nb (ENSAPOG00000018787) #18	nudt4a (ENSAPOG00000018814) #17	EEA1 (ENSAPOG00000019016) #16	plekhg7 (ENSAPOG00000019104) #15	ITPR2 (ENSAPOG00000019309) #14
Bicolor damselfish	MODERN SPECIES	2062																arntl2 (ENSSPAG00000009113) #22	si:ch211-245j22.3 (ENSSPAG00000009092) #23	ppfibp1b (ENSSPAG00000008992) #24	endouc (ENSSPAG00000008967) #25	POLR3B (ENSSPAG00000008931)	POLR3B (ENSSPAG00000008909)	rfx4 (ENSSPAG00000008860)