Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	74	ENSGT00390000007747.a ##12	ENSGT00940000156039.r ##13	ENSGT00510000046843.b.a ##15	ENSGT00940000156910.c ##16	ENSGT00940000155210.a.a.b ##17	ENSGT00540000070023.c.b ##18	ENSGT00940000161832.b.c ##19	ENSGT00530000064569.a.p.a	ENSGT00940000158037.b ##20	ENSGT00940000158187.a ##21	ENSGT00940000160423.a.a ##22	ENSGT00540000070023.d.k.b.a #18	ENSGT00940000161832.b.d #19	ENSGT00940000158037.a #20	ENSGT00940000158187.b #21	ENSGT00940000160423.a.b #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a.b #24	ENSGT00530000063825.A.c.f.a #25	ENSGT01050000244879.b.a.b.a.g #27	ENSGT00390000014700.a.a #28	ENSGT01050000244951.a.b.a.b.a.a ##24	ENSGT00530000063825.A.c.f.b ##25	ENSGT00950000183132.A #26	ENSGT01050000244879.b.a.b.a.h ##27	ENSGT00390000014700.a.b ##28	ENSGT00940000165765 #30	ENSGT00390000013899.a.a.m.a ##31	ENSGT00940000164185.b #32
Cyprininae_a	ANCESTRAL SPECIES	131	ENSGT00950000182839.A.c.d #7	ENSGT00940000158251.e.b	ENSGT00940000163898	ENSGT00940000157277.q #10	ENSGT00940000155733.a.a.a #9	ENSGT00940000161014.f #11	ENSGT00390000007747.b.a #12	ENSGT00940000156039.q #13	ENSGT00510000046843.b.b #15	ENSGT00940000156910.d #16	ENSGT00940000155210.a.a.a #17	ENSGT00540000070023.d.k.b.a #18	ENSGT00940000161832.b.d #19	ENSGT00940000158037.a #20	ENSGT00940000158187.b #21	ENSGT00940000160423.a.b #22	ENSGT00940000166645.d ##23	ENSGT01050000244951.a.b.a.b.a.b #24	ENSGT00530000063825.A.c.f.a #25	ENSGT01050000244879.b.a.b.a.g #27	ENSGT00390000014700.a.a #28
Golden-line barbel	MODERN SPECIES	54	RASSF9 (ENSSGRG00000034732) #7	ENSSGRG00000034735 #8	ctsd (ENSSGRG00000034743) #9	ENSSGRG00000035981 #10	bhlhe41 (ENSSGRG00000035982) #11	sspn (ENSSGRG00000035984) #12	ITPR2 (ENSSGRG00000036117) #13	ENSSGRG00000038255 #14	plekhg7 (ENSSGRG00000038256) #15	EEA1 (ENSSGRG00000038275) #16	nudt4a (ENSSGRG00000038729) #17	ENSSGRG00000038733 #18	ENSSGRG00000038770 #19	nr1h4 (ENSSGRG00000038774) #20	slc17a8 (ENSSGRG00000038775) #21	arntl2 (ENSSGRG00000038777) #22	si:ch211-245j22.3 (ENSSGRG00000038799) #23	ppfibp1b (ENSSGRG00000038845) #24	endouc (ENSSGRG00000041804) #25	POLR3B (ENSSGRG00000041833) #26	rfx4 (ENSSGRG00000041857) #27	ric8b (ENSSGRG00000041860) #28	ENSSGRG00000041879 #29	ENSSGRG00000041899 #30	tmem263 (ENSSGRG00000041900) #31	si:ch73-62b13.1 (ENSSGRG00000041901) #32	cry1b (ENSSGRG00000041906) #33	ABTB3 (ENSSGRG00000042000) #34	mlc1 (ENSSGRG00000042010) #35	panx2 (ENSSGRG00000042011) #36	trabd (ENSSGRG00000042015) #37
Common carp reference	MODERN SPECIES	9	RASSF9 (ENSCCRG00000020733) #7	alx1 (ENSCCRG00000082165)	ENSCCRG00000064065	SLC6A15 (ENSCCRG00000016367) #10	ctsd (ENSCCRG00000016844) #9	bhlhe41 (ENSCCRG00000024511) #11	sspn (ENSCCRG00000064758) #12	ITPR2 (ENSCCRG00000009498) #13	plekhg7 (ENSCCRG00000009533) #15	ENSCCRG00000008999 #16	nudt4a (ENSCCRG00000076998) #17	ENSCCRG00000011059 #18	ENSCCRG00000011129 #19	nr1h4 (ENSCCRG00000071484) #20	slc17a8 (ENSCCRG00000011142) #21	arntl2 (ENSCCRG00000059780) #22	si:ch211-245j22.3 (ENSCCRG00000054010) ##23	ppfibp1b (ENSCCRG00000011403) #24	endouc (ENSCCRG00000040446) #25	rfx4 (ENSCCRG00000052061) #27	ric8b (ENSCCRG00000052067) #28	tmem263 (ENSCCRG00000078909) ##31	si:ch73-62b13.1 (ENSCCRG00000063733) #32	mterf2 (ENSCCRG00000015779)	zgc:153031 (ENSCCRG00000015782)	cry1b (ENSCCRG00000074405) #33	ENSCCRG00000022156 #34	panx2 (ENSCCRG00000018939) #36	trabd (ENSCCRG00000054807) #37	selenoo1 (ENSCCRG00000063958)	mapk12a (ENSCCRG00000078090)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	37	ctcf (ENSCARG00000044673)	ripor1 (ENSCARG00000044256)	ENSCARG00000044221	pard6a (ENSCARG00000044208)	ranbp10 (ENSCARG00000044098)	ENSCARG00000044043	ENSCARG00000044024 ##14	edc4 (ENSCARG00000040193)	pskh1 (ENSCARG00000040057)	fan1 (ENSCARG00000040041)	ENSCARG00000039995	ENSCARG00000039981	ENSCARG00000039964	nr1h4 (ENSCARG00000039655) #20	slc17a8 (ENSCARG00000039515) #21	arntl2 (ENSCARG00000039202) #22	si:ch211-245j22.3 (ENSCARG00000039167) #23	ppfibp1b (ENSCARG00000038782) #24	rfx4 (ENSCARG00000038580) #27	ric8b (ENSCARG00000038471) #28	ENSCARG00000038443 #30	tmem263 (ENSCARG00000038431) ##31	si:ch73-62b13.1 (ENSCARG00000038422) #32	mterf2 (ENSCARG00000038411)	zgc:153031 (ENSCARG00000038381)	cry1b (ENSCARG00000038306) #33	ABTB3 (ENSCARG00000037451) #34	mlc1 (ENSCARG00000037214) #35	panx2 (ENSCARG00000037126) #36	trabd (ENSCARG00000037099) #37	GAN (ENSCARG00000037011)
Goldfish	MODERN SPECIES	2182															slc17a8 (ENSCARG00000050450) #21	arntl2 (ENSCARG00000050033) #22
Cyprininae	ANCESTRAL SPECIES	74	ENSGT00950000182839.A.c.c ##7	ENSGT00940000158251.e.a	ENSGT00940000157277.r ##10	ENSGT00940000155733.a.a.b ##9	ENSGT00940000161014.e ##11	ENSGT00390000007747.a ##12	ENSGT00940000156039.r ##13	ENSGT00510000046843.b.a ##15	ENSGT00940000156910.c ##16	ENSGT00940000155210.a.a.b ##17	ENSGT00540000070023.c.b ##18	ENSGT00940000161832.b.c ##19	ENSGT00530000064569.a.p.a	ENSGT00940000158037.b ##20	ENSGT00940000158187.a ##21	ENSGT00940000160423.a.a ##22	ENSGT00540000070023.d.k.b.a #18	ENSGT00940000161832.b.d #19	ENSGT00940000158037.a #20	ENSGT00940000158187.b #21	ENSGT00940000160423.a.b #22	ENSGT00940000166645 #23	ENSGT01050000244951.a.b.a.b.a.b #24	ENSGT00530000063825.A.c.f.a #25	ENSGT01050000244879.b.a.b.a.g #27	ENSGT00390000014700.a.a #28	ENSGT01050000244951.a.b.a.b.a.a ##24	ENSGT00530000063825.A.c.f.b ##25	ENSGT00950000183132.A #26	ENSGT01050000244879.b.a.b.a.h ##27	ENSGT00390000014700.a.b ##28
Cyprininae_a	ANCESTRAL SPECIES	15	ENSGT00950000182839.A.c.c ##7	ENSGT00940000158251.e.a	ENSGT00940000157277.r ##10	ENSGT00940000155733.a.a.b ##9	ENSGT00940000161014.e ##11	ENSGT00390000007747.a ##12	ENSGT00940000156039.r ##13	ENSGT00510000046843.b.a ##15	ENSGT00940000156910.c ##16	ENSGT00940000155210.a.a.b ##17	ENSGT00540000070023.c.b ##18	ENSGT00940000161832.b.c ##19	ENSGT00530000064569.a.p.a	ENSGT00940000158037.b ##20	ENSGT00940000158187.a ##21	ENSGT00940000160423.a.a ##22	ENSGT00940000166645.c #23	ENSGT01050000244951.a.b.a.b.a.a ##24	ENSGT00530000063825.A.c.f.b ##25	ENSGT00950000183132.A #26	ENSGT01050000244879.b.a.b.a.h ##27	ENSGT00390000014700.a.b ##28	ENSGT00940000165765 #30	ENSGT00390000013899.a.a.n #31	ENSGT00390000013899.a.a.m.a ##31	ENSGT00940000164185.b #32	ENSGT00530000063817.b.a.b	ENSGT00940000165780.a	ENSGT00940000155455.h.a #33	ENSGT00940000156419.a.b #34	ENSGT00940000153972.C.a #36
Common carp reference	MODERN SPECIES	19	RASSF9 (ENSCCRG00000016714) ##7	alx1 (ENSCCRG00000080026)	SLC6A15 (ENSCCRG00000016775) ##10	ctsd (ENSCCRG00000016725) ##9	sspn (ENSCCRG00000056380) ##12	bhlhe41 (ENSCCRG00000016866) ##11	ENSCCRG00000008240 ##13	plekhg7 (ENSCCRG00000008954) ##15	ENSCCRG00000053609 ##16	nudt4a (ENSCCRG00000011130) ##17	UBE2N (ENSCCRG00000063842) ##18	ENSCCRG00000011131 ##19	ENSCCRG00000003271	nr1h4 (ENSCCRG00000011134) ##20	slc17a8 (ENSCCRG00000003403) ##21	arntl2 (ENSCCRG00000011153) ##22	si:ch211-245j22.3 (ENSCCRG00000026910) #23	ppfibp1b (ENSCCRG00000002817) ##24	endouc (ENSCCRG00000012244) ##25	POLR3B (ENSCCRG00000004228) #26	rfx4 (ENSCCRG00000052092) ##27	ric8b (ENSCCRG00000066601) ##28	ENSCCRG00000072901 #30	tmem263 (ENSCCRG00000082365) ##31	si:ch73-62b13.1 (ENSCCRG00000018278) ##32	mterf2 (ENSCCRG00000018281)	cry1b (ENSCCRG00000061684) ##33	ENSCCRG00000015785 ##34	mlc1 (ENSCCRG00000043442) #35	panx2 (ENSCCRG00000018915) ##36	trabd (ENSCCRG00000018878) ##37
Goldfish	MODERN SPECIES	9	alx1 (ENSCARG00000050777)	SLC6A15 (ENSCARG00000050599) ##10	ctsd (ENSCARG00000050331) ##9	bhlhe41 (ENSCARG00000050284) ##11	sspn (ENSCARG00000050253) ##12	ITPR2 (ENSCARG00000010592) ##13	ENSCARG00000009223	plekhg7 (ENSCARG00000009219) ##15	EEA1 (ENSCARG00000006900) ##16	nudt4a (ENSCARG00000006743) ##17	UBE2N (ENSCARG00000006726) ##18	ENSCARG00000006720 ##19	ENSCARG00000006705	nr1h4 (ENSCARG00000005625) ##20	slc17a8 (ENSCARG00000004747) ##21	arntl2 (ENSCARG00000004587) ##22	ppfibp1b (ENSCARG00000004390) ##24	endouc (ENSCARG00000004308) ##25	POLR3B (ENSCARG00000004197) #26	rfx4 (ENSCARG00000004102) ##27	ENSCARG00000004080 #30	ric8b (ENSCARG00000003983) ##28	si:ch73-62b13.1 (ENSCARG00000003942) ##32	mterf2 (ENSCARG00000003924)	zgc:153031 (ENSCARG00000003901)	ABTB3 (ENSCARG00000003717) ##34	mlc1 (ENSCARG00000003641) #35	panx2 (ENSCARG00000003632) ##36	trabd (ENSCARG00000003610) ##37	selenoo1 (ENSCARG00000003584)	mapk12a (ENSCARG00000003459)