Tetrapoda	DUPLICATION
Tetrapoda	ANCESTRAL SPECIES	117	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00980000198967	ENSGT00940000158032	ENSGT00390000016516	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25
Amniota	ANCESTRAL SPECIES	1	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598
Mammalia	ANCESTRAL SPECIES	52												ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693	ENSGT00940000158032
Theria	ANCESTRAL SPECIES	13					ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Glires	ANCESTRAL SPECIES	13	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Rodentia	ANCESTRAL SPECIES	15	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Muroidea	ANCESTRAL SPECIES	21	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Muroidea_A	ANCESTRAL SPECIES	24	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00700000106164 #23	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123
Cricetidae	ANCESTRAL SPECIES	24	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00700000106164 #23	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123
Cricetidae_B	ANCESTRAL SPECIES	43	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00700000106164 #23	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b
Prairie vole	MODERN SPECIES	353	Fam228b (ENSMOCG00000006563) #7	Fam228a (ENSMOCG00000003050) #8	Itsn2 (ENSMOCG00000008139) #9	Ncoa1 (ENSMOCG00000015188) #10	Ptrhd1 (ENSMOCG00000001204) #11	ENSMOCG00000004487 #12	Adcy3 (ENSMOCG00000000285) #13	Dnajc27 (ENSMOCG00000015357) #14	Efr3b (ENSMOCG00000017910) #15	Pomc (ENSMOCG00000010293) #16	ENSMOCG00000020449 #17	Dtnb (ENSMOCG00000015987) #18	ENSMOCG00000001748 #19	Asxl2 (ENSMOCG00000003954) #20	Kif3c (ENSMOCG00000000499) #21	Rab10 (ENSMOCG00000020028) #22	ENSMOCG00000013952 #23	Garem2 (ENSMOCG00000003375) #24	Hadha (ENSMOCG00000019513) #25	ENSMOCG00000015399 #26	Il6 (ENSMOCG00000008857) #27	Hycc1 (ENSMOCG00000012168) #28	Klhl7 (ENSMOCG00000014969) #29	Nupl2 (ENSMOCG00000014431) #30	Gpnmb (ENSMOCG00000017232) #31	Malsu1 (ENSMOCG00000011177) #32	Igf2bp3 (ENSMOCG00000001740) #33	ENSMOCG00000014464 #34	ENSMOCG00000007609 #35	Ccdc126 (ENSMOCG00000004033) #36	Fam221a (ENSMOCG00000005873) #37
Northern American deer mouse	MODERN SPECIES	46															Kif3c (ENSPEMG00000010789) #21	Rab10 (ENSPEMG00000028503) #22	Garem2 (ENSPEMG00000015400) #24	Hadha (ENSPEMG00000007938) #25	ENSPEMG00000018337
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Chinese hamster chok1gshd	MODERN SPECIES	229	ENSCGRG00001011738	Pfn4 (ENSCGRG00001013229)	Fam228b (ENSCGRG00001002148) #7	Itsn2 (ENSCGRG00001014840) #9	Ncoa1 (ENSCGRG00001009336) #10	Ptrhd1 (ENSCGRG00001003289) #11	ENSCGRG00001025010 #12	Adcy3 (ENSCGRG00001010489) #13	Dnajc27 (ENSCGRG00001023794) #14	Efr3b (ENSCGRG00001024941) #15	Pomc (ENSCGRG00001023516) #16	Dnmt3a (ENSCGRG00001020172) #17	Dtnb (ENSCGRG00001024414) #18	Asxl2 (ENSCGRG00001024434) #20	Kif3c (ENSCGRG00001019464) #21	Rab10 (ENSCGRG00001018289) #22	Garem2 (ENSCGRG00001015014) #24	Hadha (ENSCGRG00001020547) #25	Hadhb (ENSCGRG00001015973)	Adgrf3 (ENSCGRG00001006414)	Selenoi (ENSCGRG00001008322)	Drc1 (ENSCGRG00001017306)	Otof (ENSCGRG00001015298)	Fam166c (ENSCGRG00001025030)	Cib4 (ENSCGRG00001024923)	Kcnk3 (ENSCGRG00001020254)	Slc35f6 (ENSCGRG00001024274)	ENSCGRG00001005366	CENPA (ENSCGRG00001016945)	Dpysl5 (ENSCGRG00001020912)	Mapre3 (ENSCGRG00001025011)
Golden Hamster	MODERN SPECIES	705	ENSMAUG00000004078	Fam228b (ENSMAUG00000017259) #7	Fam228a (ENSMAUG00000019010) #8	Itsn2 (ENSMAUG00000015636) #9	Ncoa1 (ENSMAUG00000016768) #10	Ptrhd1 (ENSMAUG00000019251) #11	ENSMAUG00000017198 #12	Adcy3 (ENSMAUG00000019311) #13	Dnajc27 (ENSMAUG00000000099) #14	Efr3b (ENSMAUG00000000436) #15	Pomc (ENSMAUG00000007673) #16	Dnmt3a (ENSMAUG00000012211) #17	Dtnb (ENSMAUG00000013638) #18	Asxl2 (ENSMAUG00000017967) #20	Kif3c (ENSMAUG00000016707) #21	Rab10 (ENSMAUG00000000087) #22
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00700000106164 #23	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b
Mus	ANCESTRAL SPECIES	10	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00700000106164 #23	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b
Mus_A	ANCESTRAL SPECIES	17	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22
Mus_B	ANCESTRAL SPECIES	17	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22
Mouse	MODERN SPECIES	3	Pfn4 (ENSMUSG00000020639)	Fam228b (ENSMUSG00000050545) #7	Fam228a (ENSMUSG00000079177) #8	Itsn2 (ENSMUSG00000020640) #9	Ncoa1 (ENSMUSG00000020647) #10	Ptrhd1 (ENSMUSG00000096199) #11	Cenpo (ENSMUSG00000020652) #12	Adcy3 (ENSMUSG00000020654) #13	Dnajc27 (ENSMUSG00000020657) #14	Efr3b (ENSMUSG00000020658) #15	Pomc (ENSMUSG00000020660) #16	Dnmt3a (ENSMUSG00000020661) #17	Dtnb (ENSMUSG00000071454) #18	Asxl2 (ENSMUSG00000037486) #20	Kif3c (ENSMUSG00000020668) #21	Rab10 (ENSMUSG00000020671) #22
Mus_C	ANCESTRAL SPECIES	11	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.a.b ##18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22
spretus	MODERN SPECIES	3	Fam228a (MGP_SPRETEiJ_G0018431) #8	MGP_SPRETEiJ_G0018430	Itsn2 (MGP_SPRETEiJ_G0018429) #9	MGP_SPRETEiJ_G0018428	Ncoa1 (MGP_SPRETEiJ_G0018427) #10	Ptrhd1 (MGP_SPRETEiJ_G0018426) #11	Cenpo (MGP_SPRETEiJ_G0018425) #12	Adcy3 (MGP_SPRETEiJ_G0018424) #13	Dnajc27 (MGP_SPRETEiJ_G0018423) #14	Efr3b (MGP_SPRETEiJ_G0018422) #15	Pomc (MGP_SPRETEiJ_G0018421) #16	MGP_SPRETEiJ_G0018420	Dtnb (MGP_SPRETEiJ_G0018418) #18	Asxl2 (MGP_SPRETEiJ_G0018417) #20	Kif3c (MGP_SPRETEiJ_G0018416) #21	Rab10 (MGP_SPRETEiJ_G0018415) #22
Steppe mouse	MODERN SPECIES	25	ENSMSIG00000029294	Ncoa1 (ENSMSIG00000029252) #10	ENSMSIG00000029247	Ptrhd1 (ENSMSIG00000029244) #11	Cenpo (ENSMSIG00000029237) #12	Adcy3 (ENSMSIG00000029208) #13	Dnajc27 (ENSMSIG00000029205) #14	Efr3b (ENSMSIG00000029204) #15	Pomc (ENSMSIG00000029200) #16	ENSMSIG00000029199	Dnmt3a (ENSMSIG00000029189) #17	ENSMSIG00000029185 ##18	ENSMSIG00000029176	Asxl2 (ENSMSIG00000029159) #20	Kif3c (ENSMSIG00000029156) #21	Rab10 (ENSMSIG00000029153) #22	ENSMSIG00000029152
Ryukyu mouse	MODERN SPECIES	3	MGP_CAROLIEiJ_G0017586	MGP_CAROLIEiJ_G0017585 #9	MGP_CAROLIEiJ_G0017584	Ncoa1 (MGP_CAROLIEiJ_G0017583) #10	Ptrhd1 (MGP_CAROLIEiJ_G0017582) #11	Cenpo (MGP_CAROLIEiJ_G0017581) #12	Adcy3 (MGP_CAROLIEiJ_G0017580) #13	Dnajc27 (MGP_CAROLIEiJ_G0017579) #14	Efr3b (MGP_CAROLIEiJ_G0017578) #15	Pomc (MGP_CAROLIEiJ_G0017577) #16	MGP_CAROLIEiJ_G0017576	Dnmt3a (MGP_CAROLIEiJ_G0017575) #17	Dtnb (MGP_CAROLIEiJ_G0017574) #18	Asxl2 (MGP_CAROLIEiJ_G0017573) #20	Kif3c (MGP_CAROLIEiJ_G0017572) #21	Rab10 (MGP_CAROLIEiJ_G0017571) #22
Shrew mouse	MODERN SPECIES	20	Sf3b6 (MGP_PahariEiJ_G0029348)	Pfn4 (MGP_PahariEiJ_G0029347)	Fam228b (MGP_PahariEiJ_G0029346) #7	Fam228a (MGP_PahariEiJ_G0029345) #8	Itsn2 (MGP_PahariEiJ_G0029344) #9	MGP_PahariEiJ_G0029343	Ncoa1 (MGP_PahariEiJ_G0029342) #10	MGP_PahariEiJ_G0029341 #12	MGP_PahariEiJ_G0029340 #13	MGP_PahariEiJ_G0029339 #14	Efr3b (MGP_PahariEiJ_G0029338) #15	Pomc (MGP_PahariEiJ_G0029337) #16	Dnmt3a (MGP_PahariEiJ_G0029336) #17	MGP_PahariEiJ_G0029335 #18	Kif3c (MGP_PahariEiJ_G0029333) #21	Rab10 (MGP_PahariEiJ_G0029332) #22	MGP_PahariEiJ_G0029331 #23	Garem2 (MGP_PahariEiJ_G0029330) #24	Hadha (MGP_PahariEiJ_G0029329) #25	Hadhb (MGP_PahariEiJ_G0029328)	Adgrf3 (MGP_PahariEiJ_G0029327)	MGP_PahariEiJ_G0029326	Drc1 (MGP_PahariEiJ_G0029325)	Otof (MGP_PahariEiJ_G0029324)	Fam166c (MGP_PahariEiJ_G0029323)	Cib4 (MGP_PahariEiJ_G0029322)	Kcnk3 (MGP_PahariEiJ_G0029321)	Slc35f6 (MGP_PahariEiJ_G0029320)	MGP_PahariEiJ_G0029319	MGP_PahariEiJ_G0029318	Mapre3 (MGP_PahariEiJ_G0029317)
Rat	MODERN SPECIES	16	AABR07052130.1 (ENSRNOG00000008501)	Itsn2 (ENSRNOG00000046741) #9	Ncoa1 (ENSRNOG00000004068) #10	Ptrhd1 (ENSRNOG00000004059) #11	Cenpo (ENSRNOG00000050111) #12	Adcy3 (ENSRNOG00000003999) #13	LOC120103497 (ENSRNOG00000052193)	Dnajc27 (ENSRNOG00000003988) #14	Efr3b (ENSRNOG00000012950) #15	Pomc (ENSRNOG00000012686) #16	Dnmt3a (ENSRNOG00000026649) #17	Dtnb (ENSRNOG00000011914) #18	ENSRNOG00000066562 #20	Asxl2 (ENSRNOG00000011908) #20	Kif3c (ENSRNOG00000011394) #21	Rab10 (ENSRNOG00000047088) #22	ENSRNOG00000069124	3110082J24Rik (ENSRNOG00000046262) #23	Garem2 (ENSRNOG00000048004) #24	Hadha (ENSRNOG00000024629) #25	Hadhb (ENSRNOG00000010800)	Adgrf3 (ENSRNOG00000024766)	Selenoi (ENSRNOG00000059295)	Drc1 (ENSRNOG00000024905)	Otof (ENSRNOG00000009967)	Fam166c (ENSRNOG00000009905)	Cib4 (ENSRNOG00000009898)	Kcnk3 (ENSRNOG00000009790)	Slc35f6 (ENSRNOG00000009459)	Cenpa (ENSRNOG00000032178)	Dpysl5 (ENSRNOG00000008996)
Upper Galilee mountains blind mole rat	MODERN SPECIES	904														Asxl2 (ENSNGAG00000017809) #20	Kif3c (ENSNGAG00000017317) #21	Rab10 (ENSNGAG00000019140) #22	Garem2 (ENSNGAG00000019452) #24	Hadha (ENSNGAG00000000257) #25	ENSNGAG00000014735	Adgrf3 (ENSNGAG00000018193)	ENSNGAG00000016715	ENSNGAG00000018498	ENSNGAG00000003438	Drc1 (ENSNGAG00000012970)	ENSNGAG00000019910	ENSNGAG00000020417	Otof (ENSNGAG00000012602)	Fam166c (ENSNGAG00000015810)	Cib4 (ENSNGAG00000016496)	Kcnk3 (ENSNGAG00000018512)	Slc35f6 (ENSNGAG00000018757)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	106	Ncoa1 (ENSJJAG00000000608) #10	Ptrhd1 (ENSJJAG00000024180) #11	Cenpo (ENSJJAG00000019283) #12	Adcy3 (ENSJJAG00000018411) #13	Dnajc27 (ENSJJAG00000016683) #14	ENSJJAG00000016036	Efr3b (ENSJJAG00000014981) #15	Pomc (ENSJJAG00000003230) #16	Dnmt3a (ENSJJAG00000002007) #17	ENSJJAG00000016173	Dtnb (ENSJJAG00000014850) #18	ENSJJAG00000013951	Asxl2 (ENSJJAG00000020150) #20	ENSJJAG00000013909	Kif3c (ENSJJAG00000018278) #21	ENSJJAG00000018461 #22	Garem2 (ENSJJAG00000017758) #24	Hadha (ENSJJAG00000017662) #25	Hadhb (ENSJJAG00000016783)	ENSJJAG00000016201	ENSJJAG00000016077
Lesser Egyptian jerboa	MODERN SPECIES	225													ENSJJAG00000018651	ENSJJAG00000018618	ENSJJAG00000018441	ENSJJAG00000018333 #22	ENSJJAG00000018267	ENSJJAG00000017939	ENSJJAG00000017417	Cyp4b1 (ENSJJAG00000016817)	ENSJJAG00000016537	Efcab14 (ENSJJAG00000016349)	Tex38 (ENSJJAG00000010819)	ENSJJAG00000010592	Mob3c (ENSJJAG00000010451)	Mknk1 (ENSJJAG00000009067)	Kncn (ENSJJAG00000007732)	Tmem275 (ENSJJAG00000007503)	Dmbx1 (ENSJJAG00000006632)	ENSJJAG00000012011	Faah (ENSJJAG00000005088)
Kangaroo rat	MODERN SPECIES	339	Pfn4 (ENSDORG00000013388)	Fam228b (ENSDORG00000028363) #7	Itsn2 (ENSDORG00000004645) #9	Ncoa1 (ENSDORG00000001089) #10	Ptrhd1 (ENSDORG00000026776) #11	Cenpo (ENSDORG00000013630) #12	Adcy3 (ENSDORG00000007778) #13	Dnajc27 (ENSDORG00000015134) #14	ENSDORG00000029715	Efr3b (ENSDORG00000005575) #15	Pomc (ENSDORG00000005577) #16	Dnmt3a (ENSDORG00000010021) #17	Dtnb (ENSDORG00000005817) #18	Asxl2 (ENSDORG00000013989) #20	Kif3c (ENSDORG00000003700) #21	Rab10 (ENSDORG00000023416) #22	Garem2 (ENSDORG00000015031) #24	Hadha (ENSDORG00000015032) #25	ENSDORG00000008292	Adgrf3 (ENSDORG00000008293)	Selenoi (ENSDORG00000013109)	Drc1 (ENSDORG00000013116)	Otof (ENSDORG00000013123)	Fam166c (ENSDORG00000013129)	Cib4 (ENSDORG00000029788)	Kcnk3 (ENSDORG00000010916)	Slc35f6 (ENSDORG00000026032)	Cenpa (ENSDORG00000000750)	Dpysl5 (ENSDORG00000014064)	Mapre3 (ENSDORG00000001038)	Tmem214 (ENSDORG00000001039)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Marmotini	ANCESTRAL SPECIES	14	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000021782 #8	ITSN2 (ENSMMMG00000021696) #9	ENSMMMG00000021686	NCOA1 (ENSMMMG00000021650) #10	PTRHD1 (ENSMMMG00000021628) #11	CENPO (ENSMMMG00000021625) #12	ADCY3 (ENSMMMG00000021582) #13	DNAJC27 (ENSMMMG00000021572) #14	EFR3B (ENSMMMG00000021552) #15	ENSMMMG00000021550 #16	DNMT3A (ENSMMMG00000021507) #17	ENSMMMG00000021366 #18	ENSMMMG00000021345	ASXL2 (ENSMMMG00000021326) #20	KIF3C (ENSMMMG00000021315) #21	ENSMMMG00000021304 #22	GAREM2 (ENSMMMG00000021301) #24	HADHA (ENSMMMG00000021297) #25	HADHB (ENSMMMG00000021287)	ADGRF3 (ENSMMMG00000021278)	SELENOI (ENSMMMG00000021266)	DRC1 (ENSMMMG00000021257)	OTOF (ENSMMMG00000021193)	FAM166C (ENSMMMG00000021179)	CIB4 (ENSMMMG00000021175)	KCNK3 (ENSMMMG00000021162)	SLC35F6 (ENSMMMG00000021156)	CENPA (ENSMMMG00000021149)	DPYSL5 (ENSMMMG00000021125)	ENSMMMG00000021119	MAPRE3 (ENSMMMG00000021097)
Alpin marmot	MODERN SPECIES	89																ENSMMMG00000021906 #22	ENSMMMG00000021907	NUDT11 (ENSMMMG00000021913)	ENSMMMG00000021916	ENSMMMG00000021923	ROR2 (ENSMMMG00000021925)	NFIL3 (ENSMMMG00000021947)	ENSMMMG00000021950	SYK (ENSMMMG00000021952)	GADD45G (ENSMMMG00000021965)	SEMA4D (ENSMMMG00000021970)	ENSMMMG00000021973	SECISBP2 (ENSMMMG00000021975)	CKS2 (ENSMMMG00000021980)	SHC3 (ENSMMMG00000021983)	S1PR3 (ENSMMMG00000021989)
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Arctic ground squirrel	MODERN SPECIES		PFN4 (ENSUPAG00010008634)	ENSUPAG00010008599 #7	ITSN2 (ENSUPAG00010008430) #9	ENSUPAG00010008420	NCOA1 (ENSUPAG00010008344) #10	PTRHD1 (ENSUPAG00010008340) #11	CENPO (ENSUPAG00010008319) #12	ADCY3 (ENSUPAG00010008224) #13	DNAJC27 (ENSUPAG00010008208) #14	EFR3B (ENSUPAG00010008174) #15	POMC (ENSUPAG00010008168) #16	DNMT3A (ENSUPAG00010008081) #17	ENSUPAG00010007737 #18	ASXL2 (ENSUPAG00010007692) #20	KIF3C (ENSUPAG00010007680) #21	RAB10 (ENSUPAG00010007668) #22	GAREM2 (ENSUPAG00010007652) #24	ENSUPAG00010007631 #25	HADHB (ENSUPAG00010007620)	ADGRF3 (ENSUPAG00010007600)	SELENOI (ENSUPAG00010007592)	DRC1 (ENSUPAG00010007561)	OTOF (ENSUPAG00010007436)	FAM166C (ENSUPAG00010007420)	CIB4 (ENSUPAG00010007407)	KCNK3 (ENSUPAG00010007399)	SLC35F6 (ENSUPAG00010007387)	CENPA (ENSUPAG00010007380)	DPYSL5 (ENSUPAG00010007343)	MAPRE3 (ENSUPAG00010007328)	TMEM214 (ENSUPAG00010007212)
Squirrel	MODERN SPECIES	93	FAM228B (ENSSTOG00000033164) #7	ENSSTOG00000003159 #8	ITSN2 (ENSSTOG00000003181) #9	NCOA1 (ENSSTOG00000005990) #10	PTRHD1 (ENSSTOG00000006030) #11	CENPO (ENSSTOG00000006039) #12	ADCY3 (ENSSTOG00000006049) #13	DNAJC27 (ENSSTOG00000006080) #14	EFR3B (ENSSTOG00000023043) #15	POMC (ENSSTOG00000006150) #16	DNMT3A (ENSSTOG00000022154) #17	ENSSTOG00000015511 #18	ENSSTOG00000034335	ASXL2 (ENSSTOG00000013729) #20	KIF3C (ENSSTOG00000013740) #21	RAB10 (ENSSTOG00000023160) #22	GAREM2 (ENSSTOG00000022734) #24	HADHA (ENSSTOG00000001593) #25	HADHB (ENSSTOG00000001601)	ADGRF3 (ENSSTOG00000001610)	SELENOI (ENSSTOG00000001622)	DRC1 (ENSSTOG00000001637)	OTOF (ENSSTOG00000020549)	FAM166C (ENSSTOG00000032726)	CIB4 (ENSSTOG00000002407)	KCNK3 (ENSSTOG00000000037)	SLC35F6 (ENSSTOG00000005833)	CENPA (ENSSTOG00000025168)	DPYSL5 (ENSSTOG00000009791)	MAPRE3 (ENSSTOG00000015500)	TMEM214 (ENSSTOG00000015505)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005022466	NCOA1 (ENSSVLG00005022362) #10	PTRHD1 (ENSSVLG00005022312) #11	CENPO (ENSSVLG00005022224) #12	ADCY3 (ENSSVLG00005022153) #13	ENSSVLG00005022096	ENSSVLG00005022076	DNAJC27 (ENSSVLG00005022027) #14	EFR3B (ENSSVLG00005021623) #15	POMC (ENSSVLG00005021550) #16	DNMT3A (ENSSVLG00005021301) #17	ENSSVLG00005021051 #18	ASXL2 (ENSSVLG00005020772) #20	ENSSVLG00005020731	KIF3C (ENSSVLG00005020692) #21	RAB10 (ENSSVLG00005020645) #22	GAREM2 (ENSSVLG00005020605) #24	HADHA (ENSSVLG00005020540) #25	HADHB (ENSSVLG00005020328)	ADGRF3 (ENSSVLG00005019818)	ENSSVLG00005019538	SELENOI (ENSSVLG00005019494)	DRC1 (ENSSVLG00005019360)	OTOF (ENSSVLG00005017767)	FAM166C (ENSSVLG00005017545)	CIB4 (ENSSVLG00005017439)	KCNK3 (ENSSVLG00005017388)	SLC35F6 (ENSSVLG00005017344)	ENSSVLG00005017194	DPYSL5 (ENSSVLG00005017026)	MAPRE3 (ENSSVLG00005016937)
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000036802	ENSHGLG00000037668	ENSHGLG00000004625	ENSHGLG00000009240 #12	ENSHGLG00000010620 #13	DNAJC27 (ENSHGLG00000043432) #14	EFR3B (ENSHGLG00000009366) #15	POMC (ENSHGLG00000046270) #16	DNMT3A (ENSHGLG00000014901) #17	ENSHGLG00000033034 #18	ENSHGLG00000020949	ENSHGLG00000019126	ASXL2 (ENSHGLG00000006048) #20	ENSHGLG00000033377 #21	ENSHGLG00000035830	ENSHGLG00000047199 #22	ENSHGLG00000044435	GAREM2 (ENSHGLG00000018233) #24	HADHA (ENSHGLG00000014003) #25	HADHB (ENSHGLG00000006268)	ADGRF3 (ENSHGLG00000008001)	SELENOI (ENSHGLG00000011515)	DRC1 (ENSHGLG00000007441)	OTOF (ENSHGLG00000007386)	ENSHGLG00000035789	CIB4 (ENSHGLG00000017440)	KCNK3 (ENSHGLG00000005243)	SLC35F6 (ENSHGLG00000005351)	ENSHGLG00000007874	DPYSL5 (ENSHGLG00000049058)	MAPRE3 (ENSHGLG00000018592)
Naked mole-rat female	MODERN SPECIES	17	ENSHGLG00000020889	CARF (ENSHGLG00000007326)	ENSHGLG00000037622	NBEAL1 (ENSHGLG00000004471)	CYP20A1 (ENSHGLG00000050312)	ABI2 (ENSHGLG00000007481)	ENSHGLG00000005031	CD28 (ENSHGLG00000037192)	CTLA4 (ENSHGLG00000009115)	ICOS (ENSHGLG00000008777)	ENSHGLG00000043313	ENSHGLG00000016877	ENSHGLG00000048100	PARD3B (ENSHGLG00000004982)	NRP2 (ENSHGLG00000010562)	ENSHGLG00000049876 #22	INO80D (ENSHGLG00000018537)	NDUFS1 (ENSHGLG00000015179)	EEF1B2 (ENSHGLG00000015147)	ENSHGLG00000045433	CMKLR2 (ENSHGLG00000046982)	ENSHGLG00000044712	ADAM23 (ENSHGLG00000006393)	FAM237A (ENSHGLG00000030355)	ENSHGLG00000005368	MDH1B (ENSHGLG00000004936)	FASTKD2 (ENSHGLG00000004761)	ENSHGLG00000045814	KLF7 (ENSHGLG00000044157)	ENSHGLG00000017319	ENSHGLG00000047324
Hystricomorpha_a	ANCESTRAL SPECIES	31	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Guinea pig	MODERN SPECIES	18	FAM228B (ENSCPOG00000030306) #7	ITSN2 (ENSCPOG00000013505) #9	ENSCPOG00000031710	NCOA1 (ENSCPOG00000001117) #10	PTRHD1 (ENSCPOG00000005561) #11	CENPO (ENSCPOG00000005563) #12	ADCY3 (ENSCPOG00000005564) #13	DNAJC27 (ENSCPOG00000006843) #14	EFR3B (ENSCPOG00000013235) #15	POMC (ENSCPOG00000004474) #16	DNMT3A (ENSCPOG00000020900) #17	ENSCPOG00000004733 #18	ASXL2 (ENSCPOG00000007343) #20	ENSCPOG00000031398	KIF3C (ENSCPOG00000037818) #21	RAB10 (ENSCPOG00000038345) #22	GAREM2 (ENSCPOG00000033262) #24	HADHA (ENSCPOG00000005945) #25	HADHB (ENSCPOG00000005418)	ADGRF3 (ENSCPOG00000000855)	SELENOI (ENSCPOG00000033910)	DRC1 (ENSCPOG00000000327)	OTOF (ENSCPOG00000000331)	FAM166C (ENSCPOG00000003754)	CIB4 (ENSCPOG00000003756)	KCNK3 (ENSCPOG00000019590)	SLC35F6 (ENSCPOG00000024555)	CENPA (ENSCPOG00000038745)	DPYSL5 (ENSCPOG00000008231)	MAPRE3 (ENSCPOG00000005103)	TMEM214 (ENSCPOG00000005106)
Hystricomorpha_b	ANCESTRAL SPECIES	26	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT01000000214622	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Long-tailed chinchilla	MODERN SPECIES	176	FAM228B (ENSCLAG00000004984) #7	ENSCLAG00000005849 #8	ITSN2 (ENSCLAG00000013590) #9	NCOA1 (ENSCLAG00000012434) #10	PTRHD1 (ENSCLAG00000006505) #11	CENPO (ENSCLAG00000007716) #12	ADCY3 (ENSCLAG00000013780) #13	DNAJC27 (ENSCLAG00000008212) #14	EFR3B (ENSCLAG00000005527) #15	POMC (ENSCLAG00000010165) #16	DNMT3A (ENSCLAG00000011272) #17	ENSCLAG00000008767 #18	ENSCLAG00000009921	ASXL2 (ENSCLAG00000011428) #20	KIF3C (ENSCLAG00000015470) #21	RAB10 (ENSCLAG00000010979) #22	GAREM2 (ENSCLAG00000013430) #24	HADHA (ENSCLAG00000009530) #25	HADHB (ENSCLAG00000010359)	ENSCLAG00000011221	SELENOI (ENSCLAG00000014310)	DRC1 (ENSCLAG00000016214)	OTOF (ENSCLAG00000009174)	FAM166C (ENSCLAG00000008355)	CIB4 (ENSCLAG00000008461)	KCNK3 (ENSCLAG00000011049)	SLC35F6 (ENSCLAG00000008346)	CENPA (ENSCLAG00000008835)	DPYSL5 (ENSCLAG00000011988)	MAPRE3 (ENSCLAG00000017298)	TMEM214 (ENSCLAG00000017342)
Degu	MODERN SPECIES	60	PFN4 (ENSODEG00000008303)	ENSODEG00000007545 #9	ENSODEG00000007584	NCOA1 (ENSODEG00000008181) #10	PTRHD1 (ENSODEG00000007805) #11	ADCY3 (ENSODEG00000007982) #13	DNAJC27 (ENSODEG00000007488) #14	EFR3B (ENSODEG00000007566) #15	POMC (ENSODEG00000010910) #16	ENSODEG00000009839 #18	ENSODEG00000012930	ASXL2 (ENSODEG00000009627) #20	ENSODEG00000009191	KIF3C (ENSODEG00000008275) #21	ENSODEG00000007394	RAB10 (ENSODEG00000008075) #22	GAREM2 (ENSODEG00000008492) #24	HADHA (ENSODEG00000009366) #25	HADHB (ENSODEG00000008596)	SELENOI (ENSODEG00000007845)	DRC1 (ENSODEG00000011420)	OTOF (ENSODEG00000007924)	CIB4 (ENSODEG00000008531)	KCNK3 (ENSODEG00000008235)	SLC35F6 (ENSODEG00000007078)	DPYSL5 (ENSODEG00000007347)	MAPRE3 (ENSODEG00000006780)	TMEM214 (ENSODEG00000008522)	AGBL5 (ENSODEG00000008715)	EMILIN1 (ENSODEG00000007515)	KHK (ENSODEG00000008065)
Lagomorpha	ANCESTRAL SPECIES	10													ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Rabbit	MODERN SPECIES	11	ENSOCUG00000037275	DDX1 (ENSOCUG00000007010)	NBAS (ENSOCUG00000015460)	ENSOCUG00000023292	ENSOCUG00000039105	LRATD1 (ENSOCUG00000002283)	ENSOCUG00000039303	TRIB2 (ENSOCUG00000003153)	ENSOCUG00000031382	ENSOCUG00000038693	LPIN1 (ENSOCUG00000003071)	NTSR2 (ENSOCUG00000021232)	ENSOCUG00000001249 #18	ASXL2 (ENSOCUG00000017108) #20	KIF3C (ENSOCUG00000015014) #21	RAB10 (ENSOCUG00000029308) #22	GAREM2 (ENSOCUG00000009777) #24	HADHA (ENSOCUG00000009786) #25	ENSOCUG00000000012	ADGRF3 (ENSOCUG00000012452)	SELENOI (ENSOCUG00000015554)	DRC1 (ENSOCUG00000015559)	OTOF (ENSOCUG00000015585)	CIB4 (ENSOCUG00000026765)	KCNK3 (ENSOCUG00000025172)	SLC35F6 (ENSOCUG00000022141)	CENPA (ENSOCUG00000028221)	DPYSL5 (ENSOCUG00000014846)	MAPRE3 (ENSOCUG00000014861)	TMEM214 (ENSOCUG00000014868)	AGBL5 (ENSOCUG00000014887)
Pika	MODERN SPECIES	5043																RAB10 (ENSOPRG00000009353) #22	GAREM2 (ENSOPRG00000009368) #24	HADHA (ENSOPRG00000009405) #25	HADHB (ENSOPRG00000009448)	ADGRF3 (ENSOPRG00000009469)	SELENOI (ENSOPRG00000009501)	DRC1 (ENSOPRG00000009515)
Tree shrew	MODERN SPECIES	5728																RAB10 (ENSTBEG00000016698) #22	ENSTBEG00000016837 #24	HADHA (ENSTBEG00000017118) #25	HADHB (ENSTBEG00000017273)	ADGRF3 (ENSTBEG00000009683)	SELENOI (ENSTBEG00000010575)	DRC1 (ENSTBEG00000010975)	OTOF (ENSTBEG00000011633)	FAM166C (ENSTBEG00000012845)	CIB4 (ENSTBEG00000013001)	KCNK3 (ENSTBEG00000013101)	SLC35F6 (ENSTBEG00000013291)	DPYSL5 (ENSTBEG00000013379)	MAPRE3 (ENSTBEG00000013617)	TMEM214 (ENSTBEG00000013868)
Primates	ANCESTRAL SPECIES	14	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Lemuriformes	ANCESTRAL SPECIES	23	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Mouse lemur	DUPLICATION
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	14	PRKCG (ENSMICG00000015697)	NLRP12 (ENSMICG00000045956)	DPRX (ENSMICG00000047562)	ZNF331 (ENSMICG00000028478)	ENSMICG00000033427	ENSMICG00000045714	ENSMICG00000031054	ENSMICG00000043851	ENSMICG00000042640	ENSMICG00000042544	ENSMICG00000028055	ENSMICG00000007824	ENSMICG00000046471	ZNF160 (ENSMICG00000005265)	ZNF415 (ENSMICG00000038620)	ENSMICG00000026989 #22	ENSMICG00000046000 #22	ZNF677 (ENSMICG00000015174)	ENSMICG00000034321	ENSMICG00000012504	ZNF841 (ENSMICG00000028869)	ENSMICG00000027221	ZNF615 (ENSMICG00000034156)	ZNF613 (ENSMICG00000002776)	ENSMICG00000026910	ZNF649 (ENSMICG00000042526)	FPR1 (ENSMICG00000008505)	HAS1 (ENSMICG00000035879)	SPACA6 (ENSMICG00000042174)	ENSMICG00000004597	ZNF175 (ENSMICG00000017565)
Mouse lemur	MODERN SPECIES	14	NLRP12 (ENSMICG00000045956)	DPRX (ENSMICG00000047562)	ZNF331 (ENSMICG00000028478)	ENSMICG00000033427	ENSMICG00000045714	ENSMICG00000031054	ENSMICG00000043851	ENSMICG00000042640	ENSMICG00000042544	ENSMICG00000028055	ENSMICG00000007824	ENSMICG00000046471	ZNF160 (ENSMICG00000005265)	ZNF415 (ENSMICG00000038620)	ENSMICG00000026989 #22	ENSMICG00000046000 #22	ZNF677 (ENSMICG00000015174)	ENSMICG00000034321	ENSMICG00000012504	ZNF841 (ENSMICG00000028869)	ENSMICG00000027221	ZNF615 (ENSMICG00000034156)	ZNF613 (ENSMICG00000002776)	ENSMICG00000026910	ZNF649 (ENSMICG00000042526)	FPR1 (ENSMICG00000008505)	HAS1 (ENSMICG00000035879)	SPACA6 (ENSMICG00000042174)	ENSMICG00000004597	ZNF175 (ENSMICG00000017565)	ENSMICG00000031727
Mouse lemur	MODERN SPECIES	30	PFN4 (ENSMICG00000001541)	FAM228B (ENSMICG00000032483) #7	FAM228A (ENSMICG00000001546) #8	ITSN2 (ENSMICG00000001552) #9	NCOA1 (ENSMICG00000037585) #10	PTRHD1 (ENSMICG00000001578) #11	CENPO (ENSMICG00000001580) #12	ADCY3 (ENSMICG00000001584) #13	DNAJC27 (ENSMICG00000027424) #14	EFR3B (ENSMICG00000001606) #15	POMC (ENSMICG00000001616) #16	ENSMICG00000004108 #17	ENSMICG00000001238 #18	ASXL2 (ENSMICG00000038141) #20	KIF3C (ENSMICG00000029603) #21	ENSMICG00000037941 #22	GAREM2 (ENSMICG00000014228) #24	HADHA (ENSMICG00000014248) #25	HADHB (ENSMICG00000006750)	ADGRF3 (ENSMICG00000006761)	SELENOI (ENSMICG00000006775)	DRC1 (ENSMICG00000006785)	OTOF (ENSMICG00000006807)	FAM166C (ENSMICG00000044017)	CIB4 (ENSMICG00000006843)	KCNK3 (ENSMICG00000006852)	ENSMICG00000032231	SLC35F6 (ENSMICG00000006854)	CENPA (ENSMICG00000034107)	DPYSL5 (ENSMICG00000017006)	MAPRE3 (ENSMICG00000016874)
Lemuriformes_a	ANCESTRAL SPECIES	10	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000172407	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Greater bamboo lemur	MODERN SPECIES	4	ENSPSMG00000005701 #9	ENSPSMG00000005687	ENSPSMG00000005684	NCOA1 (ENSPSMG00000005577) #10	PTRHD1 (ENSPSMG00000005516) #11	CENPO (ENSPSMG00000005515) #12	ADCY3 (ENSPSMG00000005496) #13	DNAJC27 (ENSPSMG00000005456) #14	EFR3B (ENSPSMG00000005442) #15	POMC (ENSPSMG00000005433) #16	DNMT3A (ENSPSMG00000005403) #17	DTNB (ENSPSMG00000005314)	ASXL2 (ENSPSMG00000005276) #20	ENSPSMG00000005229	KIF3C (ENSPSMG00000005196) #21	RAB10 (ENSPSMG00000005159) #22	GAREM2 (ENSPSMG00000005141) #24	HADHA (ENSPSMG00000005094) #25	HADHB (ENSPSMG00000004850)	ADGRF3 (ENSPSMG00000004677)	ENSPSMG00000004670	SELENOI (ENSPSMG00000004662)	DRC1 (ENSPSMG00000004646)	OTOF (ENSPSMG00000004578)	FAM166C (ENSPSMG00000004376)	CIB4 (ENSPSMG00000004366)	KCNK3 (ENSPSMG00000004353)	SLC35F6 (ENSPSMG00000004346)	CENPA (ENSPSMG00000004325)	DPYSL5 (ENSPSMG00000004304)	MAPRE3 (ENSPSMG00000004237)
Coquerels sifaka	MODERN SPECIES	534	FAM228A (ENSPCOG00000002187) #8	ITSN2 (ENSPCOG00000022978) #9	NCOA1 (ENSPCOG00000020541) #10	PTRHD1 (ENSPCOG00000003110) #11	CENPO (ENSPCOG00000006257) #12	ADCY3 (ENSPCOG00000020363) #13	DNAJC27 (ENSPCOG00000025665) #14	EFR3B (ENSPCOG00000014434) #15	POMC (ENSPCOG00000028772) #16	DNMT3A (ENSPCOG00000025150) #17	ENSPCOG00000013999 #18	ASXL2 (ENSPCOG00000027270) #20	ENSPCOG00000007714	ENSPCOG00000016865	KIF3C (ENSPCOG00000026164) #21	RAB10 (ENSPCOG00000026753) #22	GAREM2 (ENSPCOG00000017304) #24	HADHA (ENSPCOG00000021407) #25	HADHB (ENSPCOG00000013733)	ADGRF3 (ENSPCOG00000019825)	ENSPCOG00000017322	DRC1 (ENSPCOG00000014033)	OTOF (ENSPCOG00000013923)	FAM166C (ENSPCOG00000024050)	CIB4 (ENSPCOG00000005972)	KCNK3 (ENSPCOG00000027571)	SLC35F6 (ENSPCOG00000020315)	CENPA (ENSPCOG00000026894)	DPYSL5 (ENSPCOG00000015765)	MAPRE3 (ENSPCOG00000014462)	TMEM214 (ENSPCOG00000022037)
Bushbaby	MODERN SPECIES	137	PFN4 (ENSOGAG00000004473)	ENSOGAG00000028998 #8	ITSN2 (ENSOGAG00000002146) #9	ENSOGAG00000034550	NCOA1 (ENSOGAG00000000754) #10	PTRHD1 (ENSOGAG00000000756) #11	ADCY3 (ENSOGAG00000000758) #13	ENSOGAG00000027580	DNAJC27 (ENSOGAG00000015168) #14	EFR3B (ENSOGAG00000015170) #15	POMC (ENSOGAG00000028112) #16	DNMT3A (ENSOGAG00000015182) #17	ENSOGAG00000007002 #18	ASXL2 (ENSOGAG00000002435) #20	KIF3C (ENSOGAG00000026662) #21	RAB10 (ENSOGAG00000010403) #22	ENSOGAG00000027816	ENSOGAG00000030869 #24	ENSOGAG00000005440 #25	ENSOGAG00000005444	ADGRF3 (ENSOGAG00000005448)	SELENOI (ENSOGAG00000005453)	DRC1 (ENSOGAG00000005456)	OTOF (ENSOGAG00000006798)	FAM166C (ENSOGAG00000031193)	CIB4 (ENSOGAG00000006804)	KCNK3 (ENSOGAG00000006808)	SLC35F6 (ENSOGAG00000006810)	CENPA (ENSOGAG00000024154)	DPYSL5 (ENSOGAG00000006814)	MAPRE3 (ENSOGAG00000006818)
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Tarsier	MODERN SPECIES	6502														GPATCH8 (ENSTSYG00000033153)	ITGA2B (ENSTSYG00000028496)	RAB10 (ENSTSYG00000027835) #22	ENSTSYG00000007039 #24	HADHA (ENSTSYG00000007050) #25	ENSTSYG00000003570
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT00940000157177.i.a	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123
Hominidae	ANCESTRAL SPECIES	19	ENSGT00990000205444	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT00940000157177.i.a	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000168009	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT00940000157177.i.a	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123
Gorilla	MODERN SPECIES	14	NCOA1 (ENSGGOG00000011279) #10	PTRHD1 (ENSGGOG00000043870) #11	CENPO (ENSGGOG00000038847) #12	ADCY3 (ENSGGOG00000004078) #13	DNAJC27 (ENSGGOG00000004081) #14	ENSGGOG00000040190	EFR3B (ENSGGOG00000011045) #15	POMC (ENSGGOG00000003480) #16	DNMT3A (ENSGGOG00000012524) #17	ENSGGOG00000007679 #18	ENSGGOG00000043565	ASXL2 (ENSGGOG00000011013) #20	KIF3C (ENSGGOG00000008106) #21	ENSGGOG00000010631	ENSGGOG00000025056	RAB10 (ENSGGOG00000023707) #22	ENSGGOG00000040507	ENSGGOG00000010466	GAREM2 (ENSGGOG00000004917) #24	HADHA (ENSGGOG00000004918) #25	HADHB (ENSGGOG00000025829)	ADGRF3 (ENSGGOG00000011154)	SELENOI (ENSGGOG00000000006)	DRC1 (ENSGGOG00000000007)	OTOF (ENSGGOG00000000008)	FAM166C (ENSGGOG00000010712)	CIB4 (ENSGGOG00000010718)	ENSGGOG00000038547	SLC35F6 (ENSGGOG00000039816)	CENPA (ENSGGOG00000023861)	ENSGGOG00000013089
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000168009	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Human	MODERN SPECIES	11	TP53I3 (ENSG00000115129)	PFN4 (ENSG00000176732)	FAM228A (ENSG00000186453) #8	ITSN2 (ENSG00000198399) #9	NCOA1 (ENSG00000084676) #10	PTRHD1 (ENSG00000184924) #11	CENPO (ENSG00000138092) #12	ADCY3 (ENSG00000138031) #13	DNAJC27 (ENSG00000115137) #14	EFR3B (ENSG00000084710) #15	POMC (ENSG00000115138) #16	DNMT3A (ENSG00000119772) #17	DTNB (ENSG00000138101)	ASXL2 (ENSG00000143970) #20	KIF3C (ENSG00000084731) #21	RAB10 (ENSG00000084733) #22	GAREM2 (ENSG00000157833) #24	HADHA (ENSG00000084754) #25	HADHB (ENSG00000138029)	ADGRF3 (ENSG00000173567)	SELENOI (ENSG00000138018)	DRC1 (ENSG00000157856)	OTOF (ENSG00000115155)	FAM166C (ENSG00000173557)	CIB4 (ENSG00000157884)	KCNK3 (ENSG00000171303)	SLC35F6 (ENSG00000213699)	CENPA (ENSG00000115163)	DPYSL5 (ENSG00000157851)	MAPRE3 (ENSG00000084764)	TMEM214 (ENSG00000119777)
Pan	ANCESTRAL SPECIES	17	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000168009	ENSGT00940000156975.u #22	ENSGT00940000164415	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123
Chimpanzee	MODERN SPECIES	14	PTRHD1 (ENSPTRG00000011716) #11	CENPO (ENSPTRG00000011717) #12	ADCY3 (ENSPTRG00000011718) #13	DNAJC27 (ENSPTRG00000011719) #14	ARPC3 (ENSPTRG00000005438)	EFR3B (ENSPTRG00000011720) #15	ENSPTRG00000047695	POMC (ENSPTRG00000011721) #16	DNMT3A (ENSPTRG00000011723) #17	DTNB (ENSPTRG00000011724)	ASXL2 (ENSPTRG00000011726) #20	ENSPTRG00000047905	KIF3C (ENSPTRG00000011727) #21	ENSPTRG00000052062	ENSPTRG00000040383	RAB10 (ENSPTRG00000050373) #22	ENSPTRG00000052059	GAREM2 (ENSPTRG00000011731) #24	HADHA (ENSPTRG00000011732) #25	HADHB (ENSPTRG00000011733)	ADGRF3 (ENSPTRG00000011734)	SELENOI (ENSPTRG00000011735)	DRC1 (ENSPTRG00000023470)	OTOF (ENSPTRG00000050060)	C2AH2orf70 (ENSPTRG00000022566)	CIB4 (ENSPTRG00000011738)	KCNK3 (ENSPTRG00000048881)	SLC35F6 (ENSPTRG00000033946)	CENPA (ENSPTRG00000011740)	DPYSL5 (ENSPTRG00000011741)	MAPRE3 (ENSPTRG00000011742)
Bonobo	MODERN SPECIES	14	ENSPPAG00000029973	NCOA1 (ENSPPAG00000042202) #10	PTRHD1 (ENSPPAG00000035395) #11	ENSPPAG00000041965 #12	ADCY3 (ENSPPAG00000038289) #13	DNAJC27 (ENSPPAG00000031678) #14	EFR3B (ENSPPAG00000035349) #15	ENSPPAG00000028041	POMC (ENSPPAG00000038015) #16	DNMT3A (ENSPPAG00000037925) #17	DTNB (ENSPPAG00000028095)	ASXL2 (ENSPPAG00000040962) #20	KIF3C (ENSPPAG00000040221) #21	ENSPPAG00000038147	ENSPPAG00000000073	RAB10 (ENSPPAG00000031403) #22	ENSPPAG00000040272	ENSPPAG00000041660	ENSPPAG00000041743 #24	HADHA (ENSPPAG00000044082) #25	HADHB (ENSPPAG00000040869)	SELENOI (ENSPPAG00000021435)	DRC1 (ENSPPAG00000030017)	OTOF (ENSPPAG00000038766)	FAM166C (ENSPPAG00000034582)	ENSPPAG00000039751	KCNK3 (ENSPPAG00000040420)	SLC35F6 (ENSPPAG00000025353)	ENSPPAG00000030110	DPYSL5 (ENSPPAG00000038863)	ENSPPAG00000033183
Orangutan	MODERN SPECIES	14	FAM228A (ENSPPYG00000032298) #8	ITSN2 (ENSPPYG00000012599) #9	NCOA1 (ENSPPYG00000012598) #10	PTRHD1 (ENSPPYG00000036929) #11	CENPO (ENSPPYG00000034751) #12	ADCY3 (ENSPPYG00000012595) #13	DNAJC27 (ENSPPYG00000030855) #14	EFR3B (ENSPPYG00000012593) #15	ENSPPYG00000038894	POMC (ENSPPYG00000012592) #16	DNMT3A (ENSPPYG00000012591) #17	DTNB (ENSPPYG00000012590)	ASXL2 (ENSPPYG00000012589) #20	KIF3C (ENSPPYG00000012588) #21	ENSPPYG00000012587	RAB10 (ENSPPYG00000012586) #22	ENSPPYG00000040422	GAREM2 (ENSPPYG00000034864) #24	HADHA (ENSPPYG00000012583) #25	HADHB (ENSPPYG00000012582)	ADGRF3 (ENSPPYG00000012581)	SELENOI (ENSPPYG00000032296)	DRC1 (ENSPPYG00000012578)	OTOF (ENSPPYG00000012577)	FAM166C (ENSPPYG00000032905)	CIB4 (ENSPPYG00000039437)	KCNK3 (ENSPPYG00000037474)	SLC35F6 (ENSPPYG00000012573)	CENPA (ENSPPYG00000012572)	DPYSL5 (ENSPPYG00000012570)	MAPRE3 (ENSPPYG00000012568)
Gibbon	MODERN SPECIES	9	NCOA1 (ENSNLEG00000000895) #10	PTRHD1 (ENSNLEG00000000990) #11	CENPO (ENSNLEG00000000994) #12	ADCY3 (ENSNLEG00000001020) #13	DNAJC27 (ENSNLEG00000001103) #14	ENSNLEG00000034960	EFR3B (ENSNLEG00000001119) #15	POMC (ENSNLEG00000001153) #16	DNMT3A (ENSNLEG00000026822) #17	ENSNLEG00000001170 #18	ASXL2 (ENSNLEG00000028738) #20	ENSNLEG00000035558	ENSNLEG00000027472	KIF3C (ENSNLEG00000001471) #21	ENSNLEG00000030085	RAB10 (ENSNLEG00000001528) #22	ENSNLEG00000033019	ENSNLEG00000032970	GAREM2 (ENSNLEG00000001585) #24	ENSNLEG00000001616 #25	HADHB (ENSNLEG00000001754)	ADGRF3 (ENSNLEG00000002076)	SELENOI (ENSNLEG00000029725)	DRC1 (ENSNLEG00000002135)	OTOF (ENSNLEG00000002149)	FAM166C (ENSNLEG00000002450)	CIB4 (ENSNLEG00000002462)	ENSNLEG00000019012	SLC35F6 (ENSNLEG00000027135)	CENPA (ENSNLEG00000034937)	ENSNLEG00000029245
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00950000182802.A.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00390000012679.m.a	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00950000182802.A.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Vervet Monkey	MODERN SPECIES	5	FAM228A (ENSCSAG00000008425) #8	ITSN2 (ENSCSAG00000008453) #9	NCOA1 (ENSCSAG00000008479) #10	PTRHD1 (ENSCSAG00000008490) #11	CENPO (ENSCSAG00000008498) #12	ADCY3 (ENSCSAG00000008514) #13	ENSCSAG00000008524	DNAJC27 (ENSCSAG00000008536) #14	EFR3B (ENSCSAG00000008553) #15	POMC (ENSCSAG00000008563) #16	DNMT3A (ENSCSAG00000008584) #17	ENSCSAG00000008593 #17	DTNB (ENSCSAG00000008613)	ASXL2 (ENSCSAG00000008663) #20	KIF3C (ENSCSAG00000008688) #21	RAB10 (ENSCSAG00000008695) #22	GAREM2 (ENSCSAG00000008714) #24	HADHA (ENSCSAG00000008736) #25	HADHB (ENSCSAG00000008753)	SELENOI (ENSCSAG00000008763)	ENSCSAG00000008771	ENSCSAG00000008776	OTOF (ENSCSAG00000009067)	FAM166C (ENSCSAG00000009234)	CIB4 (ENSCSAG00000009252)	KCNK3 (ENSCSAG00000009271)	SLC35F6 (ENSCSAG00000009283)	CENPA (ENSCSAG00000009296)	DPYSL5 (ENSCSAG00000009382)	MAPRE3 (ENSCSAG00000009421)	TMEM214 (ENSCSAG00000009483)
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00390000012679.m.a	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00950000182802.A.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b.a.a	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Macaca	ANCESTRAL SPECIES	17	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00390000012679.m.a	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000154256.l.b	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b.a.a	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693.k
Pig-tailed macaque	MODERN SPECIES	561	NCOA1 (ENSMNEG00000039179) #10	PTRHD1 (ENSMNEG00000035044) #11	CENPO (ENSMNEG00000044763) #12	ADCY3 (ENSMNEG00000045167) #13	ENSMNEG00000027756	DNAJC27 (ENSMNEG00000035671) #14	POMC (ENSMNEG00000025401) #16	EFR3B (ENSMNEG00000033229) #15	DNMT3A (ENSMNEG00000038454) #17	ENSMNEG00000032051 #18	ENSMNEG00000041605	ENSMNEG00000044519	ASXL2 (ENSMNEG00000030154) #20	KIF3C (ENSMNEG00000032633) #21	ENSMNEG00000031146	RAB10 (ENSMNEG00000028491) #22	GAREM2 (ENSMNEG00000034057) #24	HADHA (ENSMNEG00000044721) #25	HADHB (ENSMNEG00000044887)	ADGRF3 (ENSMNEG00000031948)	SELENOI (ENSMNEG00000010725)	DRC1 (ENSMNEG00000044674)	OTOF (ENSMNEG00000040565)	FAM166C (ENSMNEG00000001318)	CIB4 (ENSMNEG00000037140)	KCNK3 (ENSMNEG00000044744)	SLC35F6 (ENSMNEG00000038432)	CENPA (ENSMNEG00000025072)	DPYSL5 (ENSMNEG00000033753)	MAPRE3 (ENSMNEG00000034824)	ENSMNEG00000019129
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000161627.a.a.a.b.b.b.b.a.b.a.b.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.b.b.c.b.a	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b.a.a	ENSGT00940000156975.u #22	ENSGT00940000164709.a.b.b.a.b.b.a.b.a.a.a.b	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693.k
Rhesus	MODERN SPECIES	4	NCOA1 (ENSMMUG00000020838) #10	PTRHD1 (ENSMMUG00000060020) #11	CENPO (ENSMMUG00000009599) #12	ADCY3 (ENSMMUG00000009600) #13	DNAJC27 (ENSMMUG00000009603) #14	EFR3B (ENSMMUG00000016461) #15	POMC (ENSMMUG00000055135) #16	ENSMMUG00000061252	ENSMMUG00000056636	ENSMMUG00000050208	DNMT3A (ENSMMUG00000013565) #17	DTNB (ENSMMUG00000016587)	ASXL2 (ENSMMUG00000001377) #20	ENSMMUG00000062814	KIF3C (ENSMMUG00000019293) #21	RAB10 (ENSMMUG00000039805) #22	ENSMMUG00000052700	ENSMMUG00000059135	GAREM2 (ENSMMUG00000004378) #24	HADHA (ENSMMUG00000004380) #25	HADHB (ENSMMUG00000004381)	ADGRF3 (ENSMMUG00000004383)	SELENOI (ENSMMUG00000014287)	OTOF (ENSMMUG00000014292)	FAM166C (ENSMMUG00000014296)	CIB4 (ENSMMUG00000014297)	KCNK3 (ENSMMUG00000056208)	SLC35F6 (ENSMMUG00000040310)	CENPA (ENSMMUG00000015934)	DPYSL5 (ENSMMUG00000019731)	MAPRE3 (ENSMMUG00000019732)
Crab-eating macaque	MODERN SPECIES	4	PTRHD1 (ENSMFAG00000040267) #11	CENPO (ENSMFAG00000031589) #12	ADCY3 (ENSMFAG00000038483) #13	DNAJC27 (ENSMFAG00000061704) #14	EFR3B (ENSMFAG00000035813) #15	POMC (ENSMFAG00000000551) #16	ENSMFAG00000063119	ENSMFAG00000048533	DNMT3A (ENSMFAG00000031180) #17	ENSMFAG00000038698 #18	ENSMFAG00000053114	ASXL2 (ENSMFAG00000039252) #20	ENSMFAG00000049777	KIF3C (ENSMFAG00000002881) #21	ENSMFAG00000044444	RAB10 (ENSMFAG00000001674) #22	ENSMFAG00000060925	HADHA (ENSMFAG00000039817) #25	ENSMFAG00000053961	HADHB (ENSMFAG00000031252)	ADGRF3 (ENSMFAG00000040027)	DRC1 (ENSMFAG00000043768)	OTOF (ENSMFAG00000043966)	FAM166C (ENSMFAG00000042764)	CIB4 (ENSMFAG00000036825)	KCNK3 (ENSMFAG00000060076)	CENPA (ENSMFAG00000045875)	SLC35F6 (ENSMFAG00000029510)	DPYSL5 (ENSMFAG00000029591)	MAPRE3 (ENSMFAG00000000279)	ENSMFAG00000045975
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00390000012679.m.a	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00950000182802.A.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b.a.a	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Olive baboon	MODERN SPECIES	5	ITSN2 (ENSPANG00000020766) #9	NCOA1 (ENSPANG00000016229) #10	ENSPANG00000000336	PTRHD1 (ENSPANG00000006781) #11	CENPO (ENSPANG00000018043) #12	ADCY3 (ENSPANG00000021654) #13	DNAJC27 (ENSPANG00000023972) #14	EFR3B (ENSPANG00000004979) #15	POMC (ENSPANG00000041108) #16	DNMT3A (ENSPANG00000009987) #17	DTNB (ENSPANG00000017000)	ASXL2 (ENSPANG00000007355) #20	KIF3C (ENSPANG00000000518) #21	ENSPANG00000035790	ENSPANG00000049061	RAB10 (ENSPANG00000009860) #22	GAREM2 (ENSPANG00000026153) #24	HADHA (ENSPANG00000019056) #25	HADHB (ENSPANG00000018040)	ADGRF3 (ENSPANG00000016225)	SELENOI (ENSPANG00000011258)	DRC1 (ENSPANG00000020443)	OTOF (ENSPANG00000019226)	FAM166C (ENSPANG00000007617)	CIB4 (ENSPANG00000014555)	KCNK3 (ENSPANG00000009018)	SLC35F6 (ENSPANG00000030429)	CENPA (ENSPANG00000026487)	DPYSL5 (ENSPANG00000000632)	MAPRE3 (ENSPANG00000014553)	TMEM214 (ENSPANG00000009921)
Cercopithecinae_d	ANCESTRAL SPECIES	23	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00390000012679.m.a	ENSGT00940000157133 #14	ENSGT00390000010170.a.b.d	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00950000182802.A.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b.a.a	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Drill	MODERN SPECIES	340	FAM228A (ENSMLEG00000011620) #8	ITSN2 (ENSMLEG00000033491) #9	NCOA1 (ENSMLEG00000032601) #10	PTRHD1 (ENSMLEG00000030314) #11	CENPO (ENSMLEG00000041293) #12	ADCY3 (ENSMLEG00000037538) #13	ENSMLEG00000029014	DNAJC27 (ENSMLEG00000029813) #14	EFR3B (ENSMLEG00000031167) #15	POMC (ENSMLEG00000009557) #16	DNMT3A (ENSMLEG00000034751) #17	ENSMLEG00000035719 #18	ENSMLEG00000043138	ASXL2 (ENSMLEG00000042828) #20	KIF3C (ENSMLEG00000036529) #21	RAB10 (ENSMLEG00000039320) #22	GAREM2 (ENSMLEG00000032967) #24	HADHA (ENSMLEG00000022425) #25	ENSMLEG00000038228	HADHB (ENSMLEG00000003668)	ADGRF3 (ENSMLEG00000036680)	SELENOI (ENSMLEG00000041082)	DRC1 (ENSMLEG00000037987)	OTOF (ENSMLEG00000027728)	FAM166C (ENSMLEG00000036937)	CIB4 (ENSMLEG00000028464)	KCNK3 (ENSMLEG00000038319)	SLC35F6 (ENSMLEG00000044250)	CENPA (ENSMLEG00000039231)	DPYSL5 (ENSMLEG00000041344)	MAPRE3 (ENSMLEG00000032860)
Sooty mangabey	MODERN SPECIES	542	PTRHD1 (ENSCATG00000033690) #11	CENPO (ENSCATG00000035791) #12	ADCY3 (ENSCATG00000006719) #13	ENSCATG00000028816	DNAJC27 (ENSCATG00000029231) #14	ENSCATG00000043764	EFR3B (ENSCATG00000000318) #15	POMC (ENSCATG00000041120) #16	ENSCATG00000019562	DNMT3A (ENSCATG00000003150) #17	ENSCATG00000031389 #18	ENSCATG00000013048	ASXL2 (ENSCATG00000041653) #20	KIF3C (ENSCATG00000029067) #21	ENSCATG00000030449	RAB10 (ENSCATG00000002631) #22	GAREM2 (ENSCATG00000040150) #24	HADHA (ENSCATG00000030823) #25	HADHB (ENSCATG00000037244)	ADGRF3 (ENSCATG00000036098)	SELENOI (ENSCATG00000019121)	DRC1 (ENSCATG00000042753)	OTOF (ENSCATG00000043960)	FAM166C (ENSCATG00000038758)	CIB4 (ENSCATG00000034446)	KCNK3 (ENSCATG00000043870)	SLC35F6 (ENSCATG00000044941)	CENPA (ENSCATG00000037376)	DPYSL5 (ENSCATG00000021528)	MAPRE3 (ENSCATG00000036386)	TMEM214 (ENSCATG00000039251)
Rhinopithecus	ANCESTRAL SPECIES	47		ENSGT00940000162581	ENSGT00590000083139	ENSGT00390000009688	ENSGT00940000160140.b	ENSGT00390000013092	ENSGT00950000182945.b.a.a.b.b.b	ENSGT00390000016811 #16	ENSGT00950000182802.A.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT01030000234542.b.a.a.a.b.a.a.a.b.a.a	ENSGT00940000153739.a.b #21	ENSGT00390000003860.h.b	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.b	ENSGT00670000098076.i.a.b.g.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.o	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123
Golden snub-nosed monkey	MODERN SPECIES	2393			TDRD15 (ENSRROG00000012190)	APOB (ENSRROG00000034792)	LDAH (ENSRROG00000042894)	GDF7 (ENSRROG00000032206)	HS1BP3 (ENSRROG00000045342)	RHOB (ENSRROG00000027959)	POMC (ENSRROG00000045388) #16	ENSRROG00000002529	DNMT3A (ENSRROG00000033151) #17	ENSRROG00000041965 #18	ASXL2 (ENSRROG00000034489) #20	ENSRROG00000000064	KIF3C (ENSRROG00000045700) #21	RAB10 (ENSRROG00000028647) #22	GAREM2 (ENSRROG00000034425) #24	HADHA (ENSRROG00000032860) #25	HADHB (ENSRROG00000025585)	ENSRROG00000036092	ADGRF3 (ENSRROG00000037215)	SELENOI (ENSRROG00000030657)	DRC1 (ENSRROG00000045724)	ENSRROG00000036843	OTOF (ENSRROG00000030813)
Black snub-nosed monkey	MODERN SPECIES	560	LDAH (ENSRBIG00000039351)	ENSRBIG00000038314	GDF7 (ENSRBIG00000031200)	HS1BP3 (ENSRBIG00000031881)	RHOB (ENSRBIG00000023783)	ENSRBIG00000022710	POMC (ENSRBIG00000014218) #16	ENSRBIG00000029807	DNMT3A (ENSRBIG00000031793) #17	ENSRBIG00000033599 #18	ASXL2 (ENSRBIG00000030906) #20	ENSRBIG00000036540	ENSRBIG00000038397	KIF3C (ENSRBIG00000018579) #21	ENSRBIG00000036827	RAB10 (ENSRBIG00000044561) #22	GAREM2 (ENSRBIG00000030250) #24	HADHA (ENSRBIG00000030017) #25	HADHB (ENSRBIG00000024676)	ENSRBIG00000010956	ADGRF3 (ENSRBIG00000035232)	SELENOI (ENSRBIG00000026035)	DRC1 (ENSRBIG00000037025)	OTOF (ENSRBIG00000027377)	FAM166C (ENSRBIG00000041010)	CIB4 (ENSRBIG00000044606)	KCNK3 (ENSRBIG00000039484)	SLC35F6 (ENSRBIG00000039090)	CENPA (ENSRBIG00000043662)	DPYSL5 (ENSRBIG00000031460)	ENSRBIG00000044902
Platyrrhini	ANCESTRAL SPECIES	45	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a #25	ENSGT01030000234626.A.b.o.a
Mas night monkey	MODERN SPECIES	378															KIF3C (ENSANAG00000034291) #21	RAB10 (ENSANAG00000021257) #22	ENSANAG00000034719	GAREM2 (ENSANAG00000037139) #24	HADHA (ENSANAG00000029684) #25	ENSANAG00000027802
Cebidae	ANCESTRAL SPECIES	40	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a.d #25	ENSGT00940000154677.g.a.c #25	ENSGT01030000234626.A.b.o.a
Marmoset	MODERN SPECIES	5	TMEM214 (ENSCJAG00000001317)	MAPRE3 (ENSCJAG00000001341)	DPYSL5 (ENSCJAG00000001352)	ENSCJAG00000075557	CENPA (ENSCJAG00000058840)	SLC35F6 (ENSCJAG00000071257)	KCNK3 (ENSCJAG00000052158)	CIB4 (ENSCJAG00000001393)	FAM166C (ENSCJAG00000001406)	OTOF (ENSCJAG00000001409)	DRC1 (ENSCJAG00000001461)	ENSCJAG00000086527	SELENOI (ENSCJAG00000001477)	ADGRF3 (ENSCJAG00000001491)	KIF3C (ENSCJAG00000008138) #21	RAB10 (ENSCJAG00000056072) #22	ENSCJAG00000070963	GAREM2 (ENSCJAG00000008091) #24	HADHA (ENSCJAG00000008008) #25	ENSCJAG00000007943	ENSCJAG00000078565	ENSCJAG00000072220	ASXL2 (ENSCJAG00000008396) #20	ENSCJAG00000008281 #18	ENSCJAG00000084719	DNMT3A (ENSCJAG00000008172) #17	POMC (ENSCJAG00000045765) #16	EFR3B (ENSCJAG00000008127) #15	ENSCJAG00000047462	ENSCJAG00000073498	DNAJC27 (ENSCJAG00000008094) #14
Cebidae_a	ANCESTRAL SPECIES	46	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00950000183098.b.a.b.ib.a.a.a.a.a	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677.g.a.c #25	ENSGT01030000234626.A.b.o.a
Capuchin	MODERN SPECIES	1	ADCY3 (ENSCCAG00000021802) #13	DNAJC27 (ENSCCAG00000021410) #14	ENSCCAG00000025067	EFR3B (ENSCCAG00000022207) #15	POMC (ENSCCAG00000030547) #16	DNMT3A (ENSCCAG00000037628) #17	ENSCCAG00000035816 #18	ASXL2 (ENSCCAG00000028549) #20	ENSCCAG00000033575	ENSCCAG00000036729	ENSCCAG00000037788	ENSCCAG00000029919	ENSCCAG00000024370	KIF3C (ENSCCAG00000035056) #21	ENSCCAG00000027276	RAB10 (ENSCCAG00000031920) #22	GAREM2 (ENSCCAG00000037792) #24	ENSCCAG00000024976 #25	HADHB (ENSCCAG00000029773)	ENSCCAG00000036739
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	113	PTRHD1 (ENSSBOG00000031751) #11	CENPO (ENSSBOG00000023221) #12	ENSSBOG00000007440	ADCY3 (ENSSBOG00000022082) #13	DNAJC27 (ENSSBOG00000021759) #14	EFR3B (ENSSBOG00000026571) #15	POMC (ENSSBOG00000030918) #16	DNMT3A (ENSSBOG00000027618) #17	ENSSBOG00000023696 #18	ENSSBOG00000022145	ASXL2 (ENSSBOG00000001902) #20	ENSSBOG00000026562	ENSSBOG00000031056	KIF3C (ENSSBOG00000025038) #21	ENSSBOG00000023403	RAB10 (ENSSBOG00000034188) #22	GAREM2 (ENSSBOG00000020309) #24	ENSSBOG00000032851 #25	ENSSBOG00000024755
Bolivian squirrel monkey	MODERN SPECIES	70	COL4A2 (ENSSBOG00000022396)	COL4A1 (ENSSBOG00000035112)	IRS2 (ENSSBOG00000033562)	MYO16 (ENSSBOG00000036268)	TNFSF13B (ENSSBOG00000033235)	ABHD13 (ENSSBOG00000019782)	LIG4 (ENSSBOG00000019029)	ENSSBOG00000024651	ENSSBOG00000023659	ENSSBOG00000035667	NALF1 (ENSSBOG00000025953)	ENSSBOG00000021398	ARGLU1 (ENSSBOG00000025713)	EFNB2 (ENSSBOG00000030780)	ENSSBOG00000021042	ENSSBOG00000025314 #22	SLC10A2 (ENSSBOG00000033035)	ENSSBOG00000027930	METTL21EP (ENSSBOG00000032455)	ENSSBOG00000024890	POGLUT2 (ENSSBOG00000019020)	TEX30 (ENSSBOG00000021338)	ENSSBOG00000018830	METTL21C (ENSSBOG00000025136)	TPP2 (ENSSBOG00000019200)	ENSSBOG00000028923	FGF14 (ENSSBOG00000033114)	ENSSBOG00000017267	ITGBL1 (ENSSBOG00000036065)	NALCN (ENSSBOG00000026898)	TMTC4 (ENSSBOG00000024986)
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156975.u #22
Common shrew	MODERN SPECIES	7157																RAB10 (ENSSARG00000000945) #22
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Suina	ANCESTRAL SPECIES	13	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Chacoan peccary	MODERN SPECIES	776	FAM228B (ENSCWAG00000004823) #7	ENSCWAG00000004843 #8	ENSCWAG00000004865	ITSN2 (ENSCWAG00000004911) #9	NCOA1 (ENSCWAG00000005236) #10	PTRHD1 (ENSCWAG00000005319) #11	CENPO (ENSCWAG00000005341) #12	ADCY3 (ENSCWAG00000005376) #13	DNAJC27 (ENSCWAG00000005420) #14	EFR3B (ENSCWAG00000005505) #15	POMC (ENSCWAG00000005810) #16	DNMT3A (ENSCWAG00000005845) #17	DTNB (ENSCWAG00000006032)	ASXL2 (ENSCWAG00000008355) #20	KIF3C (ENSCWAG00000008496) #21	RAB10 (ENSCWAG00000008575) #22	GAREM2 (ENSCWAG00000008629) #24	HADHA (ENSCWAG00000008770) #25	HADHB (ENSCWAG00000008886)	ADGRF3 (ENSCWAG00000009293)	SELENOI (ENSCWAG00000009999)	DRC1 (ENSCWAG00000010039)	OTOF (ENSCWAG00000010240)	FAM166C (ENSCWAG00000011886)	CIB4 (ENSCWAG00000011940)	KCNK3 (ENSCWAG00000012027)	SLC35F6 (ENSCWAG00000012059)	CENPA (ENSCWAG00000012096)	DPYSL5 (ENSCWAG00000012185)	MAPRE3 (ENSCWAG00000012295)	TMEM214 (ENSCWAG00000012344)
Pig	MODERN SPECIES	11	FAM228B (ENSSSCG00000008584) #7	ENSSSCG00000008582 #8	ITSN2 (ENSSSCG00000008583) #9	NCOA1 (ENSSSCG00000008581) #10	CENPO (ENSSSCG00000055702) #12	ADCY3 (ENSSSCG00000008578) #13	DNAJC27 (ENSSSCG00000008577) #14	EFR3B (ENSSSCG00000022933) #15	ENSSSCG00000021155 #16	DNMT3A (ENSSSCG00000029413) #17	ENSSSCG00000008576 #18	ENSSSCG00000051169	ASXL2 (ENSSSCG00000008575) #20	KIF3C (ENSSSCG00000008574) #21	ENSSSCG00000058357	RAB10 (ENSSSCG00000008573) #22	GAREM2 (ENSSSCG00000008572) #24	HADHA (ENSSSCG00000008571) #25	ENSSSCG00000033644	HADHB (ENSSSCG00000008569)	ADGRF3 (ENSSSCG00000008570)	SELENOI (ENSSSCG00000030643)	DRC1 (ENSSSCG00000008568)	ENSSSCG00000022357	OTOF (ENSSSCG00000037751)	FAM166C (ENSSSCG00000008565)	CIB4 (ENSSSCG00000008564)	KCNK3 (ENSSSCG00000008563)	SLC35F6 (ENSSSCG00000008562)	CENPA (ENSSSCG00000038543)	DPYSL5 (ENSSSCG00000008560)
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Camelidae	ANCESTRAL SPECIES	12	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Arabian camel	MODERN SPECIES	6	FAM228B (ENSCDRG00005008179) #7	ENSCDRG00005008220 #8	ITSN2 (ENSCDRG00005008345) #9	NCOA1 (ENSCDRG00005008961) #10	PTRHD1 (ENSCDRG00005009361) #11	CENPO (ENSCDRG00005009418) #12	ADCY3 (ENSCDRG00005009564) #13	ENSCDRG00005009686	DNAJC27 (ENSCDRG00005009711) #14	EFR3B (ENSCDRG00005009818) #15	ENSCDRG00005010039 #16	DNMT3A (ENSCDRG00005010068) #17	ENSCDRG00005010397 #18	ASXL2 (ENSCDRG00005011334) #20	KIF3C (ENSCDRG00005011518) #21	RAB10 (ENSCDRG00005011600) #22	GAREM2 (ENSCDRG00005011666) #24	HADHA (ENSCDRG00005011749) #25	HADHB (ENSCDRG00005011980)	ADGRF3 (ENSCDRG00005012247)	ENSCDRG00005012380	SELENOI (ENSCDRG00005012423)	DRC1 (ENSCDRG00005012478)	OTOF (ENSCDRG00005012657)	FAM166C (ENSCDRG00005012972)	CIB4 (ENSCDRG00005013022)	KCNK3 (ENSCDRG00005013127)	SLC35F6 (ENSCDRG00005013158)	CENPA (ENSCDRG00005013201)	DPYSL5 (ENSCDRG00005013299)	MAPRE3 (ENSCDRG00005006682)
Alpaca	MODERN SPECIES	3040																RAB10 (ENSVPAG00000002641) #22	ENSVPAG00000002642 #24	HADHA (ENSVPAG00000002645) #25	HADHB (ENSVPAG00000002646)	SELENOI (ENSVPAG00000002651)	DRC1 (ENSVPAG00000002655)	ENSVPAG00000002656	ENSVPAG00000002661
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Pecora	ANCESTRAL SPECIES	5	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Yarkand deer	MODERN SPECIES	2	ENSCHYG00000015795	FAM228B (ENSCHYG00000015709) #7	ENSCHYG00000015598 #8	ITSN2 (ENSCHYG00000014839) #9	NCOA1 (ENSCHYG00000014313) #10	PTRHD1 (ENSCHYG00000014175) #11	CENPO (ENSCHYG00000014066) #12	ADCY3 (ENSCHYG00000013932) #13	DNAJC27 (ENSCHYG00000013784) #14	EFR3B (ENSCHYG00000013292) #15	POMC (ENSCHYG00000013191) #16	DNMT3A (ENSCHYG00000012556) #17	ENSCHYG00000011641 #18	ASXL2 (ENSCHYG00000011494) #20	KIF3C (ENSCHYG00000011405) #21	RAB10 (ENSCHYG00000011347) #22	GAREM2 (ENSCHYG00000011311) #24	HADHA (ENSCHYG00000010003) #25	HADHB (ENSCHYG00000009640)	ADGRF3 (ENSCHYG00000009487)	SELENOI (ENSCHYG00000009378)	DRC1 (ENSCHYG00000009228)	OTOF (ENSCHYG00000008676)	FAM166C (ENSCHYG00000008639)	CIB4 (ENSCHYG00000008562)	KCNK3 (ENSCHYG00000008547)	SLC35F6 (ENSCHYG00000008502)	ENSCHYG00000008434	DPYSL5 (ENSCHYG00000008359)	MAPRE3 (ENSCHYG00000008266)	TMEM214 (ENSCHYG00000008158)
Percora_a	ANCESTRAL SPECIES	13	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	240	PFN4 (ENSMMSG00000003409)	ENSMMSG00000003424 #8	ITSN2 (ENSMMSG00000003485) #9	NCOA1 (ENSMMSG00000003674) #10	ENSMMSG00000003745 #11	CENPO (ENSMMSG00000003754) #12	ADCY3 (ENSMMSG00000003774) #13	DNAJC27 (ENSMMSG00000003798) #14	EFR3B (ENSMMSG00000003852) #15	POMC (ENSMMSG00000003919) #16	ENSMMSG00000003931	DNMT3A (ENSMMSG00000003949) #17	ENSMMSG00000004026 #18	ASXL2 (ENSMMSG00000004131) #20	KIF3C (ENSMMSG00000004152) #21	ENSMMSG00000004163 #22	GAREM2 (ENSMMSG00000004177) #24	HADHA (ENSMMSG00000004193) #25	HADHB (ENSMMSG00000004251)	ADGRF3 (ENSMMSG00000004296)	SELENOI (ENSMMSG00000004311)	ENSMMSG00000004719	ENSMMSG00000004743	OTOF (ENSMMSG00000004848)	FAM166C (ENSMMSG00000005676)	CIB4 (ENSMMSG00000005697)	KCNK3 (ENSMMSG00000005730)	SLC35F6 (ENSMMSG00000005749)	ENSMMSG00000005795	DPYSL5 (ENSMMSG00000005856)	MAPRE3 (ENSMMSG00000005915)
Siberian musk deer	MODERN SPECIES	124	KLK5 (ENSMMSG00000011181)	KLK6 (ENSMMSG00000011139)	KLK7 (ENSMMSG00000011113)	KLK8 (ENSMMSG00000011037)	KLK9 (ENSMMSG00000011004)	KLK10 (ENSMMSG00000010981)	KLK11 (ENSMMSG00000010918)	KLK12 (ENSMMSG00000010859)	KLK13 (ENSMMSG00000010806)	KLK14 (ENSMMSG00000010757)	ENSMMSG00000010734	ENSMMSG00000010702	ENSMMSG00000010653	ENSMMSG00000010479	ENSMMSG00000010271	ENSMMSG00000010243 #22	ENSMMSG00000010189	ENSMMSG00000010138	IGLON5 (ENSMMSG00000010098)	VSIG10L (ENSMMSG00000010066)	ETFB (ENSMMSG00000010038)	CLDND2 (ENSMMSG00000010003)	NKG7 (ENSMMSG00000009969)	LIM2 (ENSMMSG00000009940)	C19orf84 (ENSMMSG00000009920)	ENSMMSG00000009862	ENSMMSG00000009678	ENSMMSG00000009641	ENSMMSG00000009541	ZNF175 (ENSMMSG00000009519)	ENSMMSG00000009506
Bovidae	ANCESTRAL SPECIES	5	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Caprinae	ANCESTRAL SPECIES	9	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b.bc	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Goat	MODERN SPECIES	2	FAM228B (ENSCHIG00000022823) #7	ENSCHIG00000012771 #8	ITSN2 (ENSCHIG00000012898) #9	NCOA1 (ENSCHIG00000016656) #10	PTRHD1 (ENSCHIG00000014757) #11	ENSCHIG00000014194 #12	ADCY3 (ENSCHIG00000025812) #13	DNAJC27 (ENSCHIG00000013821) #14	EFR3B (ENSCHIG00000013224) #15	POMC (ENSCHIG00000024414) #16	DNMT3A (ENSCHIG00000014247) #17	ENSCHIG00000010663 #18	ASXL2 (ENSCHIG00000023616) #20	ENSCHIG00000009652	KIF3C (ENSCHIG00000005084) #21	RAB10 (ENSCHIG00000007930) #22	GAREM2 (ENSCHIG00000022994) #24	HADHA (ENSCHIG00000022677) #25	HADHB (ENSCHIG00000024735)	ENSCHIG00000023283	ENSCHIG00000013868	DRC1 (ENSCHIG00000001933)	FAM166C (ENSCHIG00000017427)	OTOF (ENSCHIG00000018439)	CIB4 (ENSCHIG00000016186)	KCNK3 (ENSCHIG00000026730)	SLC35F6 (ENSCHIG00000021255)	ENSCHIG00000010550	DPYSL5 (ENSCHIG00000026005)	MAPRE3 (ENSCHIG00000022223)	TMEM214 (ENSCHIG00000007752)
Rambouillet Sheep	MODERN SPECIES	19	FAM228B (ENSOARG00020020153) #7	ENSOARG00020020223 #8	ITSN2 (ENSOARG00020020291) #9	NCOA1 (ENSOARG00020020912) #10	PTRHD1 (ENSOARG00020021146) #11	CENPO (ENSOARG00020021166) #12	ADCY3 (ENSOARG00020021236) #13	DNAJC27 (ENSOARG00020021503) #14	EFR3B (ENSOARG00020021643) #15	POMC (ENSOARG00020022037) #16	DNMT3A (ENSOARG00020022113) #17	ENSOARG00020022321 #18	ASXL2 (ENSOARG00020022527) #20	KIF3C (ENSOARG00020022724) #21	ENSOARG00020000209	RAB10 (ENSOARG00020000225) #22	GAREM2 (ENSOARG00020000249) #24	HADHA (ENSOARG00020000289) #25	HADHB (ENSOARG00020000348)	ADGRF3 (ENSOARG00020000413)	SELENOI (ENSOARG00020000449)	DRC1 (ENSOARG00020000494)	OTOF (ENSOARG00020000652)	FAM166C (ENSOARG00020001012)	CIB4 (ENSOARG00020001043)	KCNK3 (ENSOARG00020001063)	SLC35F6 (ENSOARG00020001108)	CENPA (ENSOARG00020001123)	DPYSL5 (ENSOARG00020001155)	MAPRE3 (ENSOARG00020001192)	TMEM214 (ENSOARG00020001236)
Bovinae	ANCESTRAL SPECIES	4	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00960000190709	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Bos	ANCESTRAL SPECIES	5	ENSGT00940000164632.b	ENSGT00940000155936.b.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00960000190709	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00950000183198.c.b.b.d	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000164632.b	ENSGT00940000155936.b.b #9	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.b.a.b	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00960000190709	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b
Cow	MODERN SPECIES	2	ENSBTAG00000051942	ITSN2 (ENSBTAG00000023172) #9	ENSBTAG00000049243	NCOA1 (ENSBTAG00000015007) #10	PTRHD1 (ENSBTAG00000015012) #11	CENPO (ENSBTAG00000015014) #12	ADCY3 (ENSBTAG00000018705) #13	DNAJC27 (ENSBTAG00000018239) #14	EFR3B (ENSBTAG00000007888) #15	POMC (ENSBTAG00000007897) #16	ENSBTAG00000054828	DNMT3A (ENSBTAG00000021143) #17	DTNB (ENSBTAG00000021072) #18	ASXL2 (ENSBTAG00000019983) #20	KIF3C (ENSBTAG00000019138) #21	RAB10 (ENSBTAG00000000985) #22	GAREM2 (ENSBTAG00000015037) #24	ENSBTAG00000054613	HADHA (ENSBTAG00000015038) #25	HADHB (ENSBTAG00000010083)	ADGRF3 (ENSBTAG00000005736)	ENSBTAG00000017330	SELENOI (ENSBTAG00000007837)	DRC1 (ENSBTAG00000009649)	OTOF (ENSBTAG00000009650)	FAM166C (ENSBTAG00000031150)	CIB4 (ENSBTAG00000005041)	KCNK3 (ENSBTAG00000051102)	SLC35F6 (ENSBTAG00000018761)	CENPA (ENSBTAG00000023938)	DPYSL5 (ENSBTAG00000018576)
Bos_a	ANCESTRAL SPECIES	6	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00960000190709	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT01100000263481.n.a.a.a.b.b.b.b.b.b.b.a	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.m.a.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b
Wild yak	MODERN SPECIES	752	ENSBMUG00000006172 #8	ITSN2 (ENSBMUG00000006272) #9	NCOA1 (ENSBMUG00000006387) #10	PTRHD1 (ENSBMUG00000006473) #11	CENPO (ENSBMUG00000006492) #12	ADCY3 (ENSBMUG00000006526) #13	DNAJC27 (ENSBMUG00000006549) #14	EFR3B (ENSBMUG00000006619) #15	POMC (ENSBMUG00000006633) #16	ENSBMUG00000006637	DNMT3A (ENSBMUG00000006671) #17	ENSBMUG00000006789 #18	ASXL2 (ENSBMUG00000006985) #20	ENSBMUG00000007004	KIF3C (ENSBMUG00000007015) #21	RAB10 (ENSBMUG00000007030) #22	GAREM2 (ENSBMUG00000007039) #24	HADHA (ENSBMUG00000007070) #25	HADHB (ENSBMUG00000007151)	ADGRF3 (ENSBMUG00000007181)	SELENOI (ENSBMUG00000007207)	DRC1 (ENSBMUG00000007424)	OTOF (ENSBMUG00000007996)	FAM166C (ENSBMUG00000008127)	CIB4 (ENSBMUG00000008137)	KCNK3 (ENSBMUG00000008150)	SLC35F6 (ENSBMUG00000008165)	ENSBMUG00000008176	DPYSL5 (ENSBMUG00000008186)	MAPRE3 (ENSBMUG00000008220)	TMEM214 (ENSBMUG00000008301)
Domestic yak	MODERN SPECIES	28	ENSBGRG00000017956	NCOA1 (ENSBGRG00000017177) #10	PTRHD1 (ENSBGRG00000017120) #11	CENPO (ENSBGRG00000017015) #12	ADCY3 (ENSBGRG00000016642) #13	DNAJC27 (ENSBGRG00000016424) #14	EFR3B (ENSBGRG00000015799) #15	ENSBGRG00000015740 #16	ENSBGRG00000015691	DNMT3A (ENSBGRG00000015176) #17	DTNB (ENSBGRG00000014178)	ASXL2 (ENSBGRG00000013739) #20	ENSBGRG00000013699	ENSBGRG00000013690	KIF3C (ENSBGRG00000013558) #21	RAB10 (ENSBGRG00000013498) #22	GAREM2 (ENSBGRG00000013458) #24	ENSBGRG00000013436	HADHA (ENSBGRG00000012469) #25	HADHB (ENSBGRG00000011944)	ADGRF3 (ENSBGRG00000011740)	SELENOI (ENSBGRG00000011521)	DRC1 (ENSBGRG00000011341)	OTOF (ENSBGRG00000011136)	FAM166C (ENSBGRG00000011044)	CIB4 (ENSBGRG00000010921)	KCNK3 (ENSBGRG00000010821)	SLC35F6 (ENSBGRG00000010740)	ENSBGRG00000010562	DPYSL5 (ENSBGRG00000012850)	MAPRE3 (ENSBGRG00000012781)
American bison	MODERN SPECIES	3068	ENSBBBG00000018716 #8	ITSN2 (ENSBBBG00000018695) #9	NCOA1 (ENSBBBG00000018553) #10	PTRHD1 (ENSBBBG00000004568) #11	CENPO (ENSBBBG00000018527) #12	ADCY3 (ENSBBBG00000018516) #13	DNAJC27 (ENSBBBG00000018479) #14	EFR3B (ENSBBBG00000004527) #15	POMC (ENSBBBG00000006902) #16	ENSBBBG00000018393	DNMT3A (ENSBBBG00000004490) #17	DTNB (ENSBBBG00000018305)	ASXL2 (ENSBBBG00000017858) #20	ENSBBBG00000017835	KIF3C (ENSBBBG00000017822) #21	RAB10 (ENSBBBG00000017772) #22	GAREM2 (ENSBBBG00000008382) #24	HADHA (ENSBBBG00000017750) #25	HADHB (ENSBBBG00000017631)	ADGRF3 (ENSBBBG00000017500)	SELENOI (ENSBBBG00000017484)	ENSBBBG00000017459	OTOF (ENSBBBG00000004312)	FAM166C (ENSBBBG00000017115)	CIB4 (ENSBBBG00000017106)	KCNK3 (ENSBBBG00000004224)	SLC35F6 (ENSBBBG00000017080)	ENSBBBG00000017068	DPYSL5 (ENSBBBG00000017042)	MAPRE3 (ENSBBBG00000016965)	TMEM214 (ENSBBBG00000016931)
Cetacea	ANCESTRAL SPECIES	16	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959.d #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b.m #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Blue whale	MODERN SPECIES	4	PFN4 (ENSBMSG00010012996)	FAM228B (ENSBMSG00010012972) #7	ITSN2 (ENSBMSG00010012828) #9	NCOA1 (ENSBMSG00010012629) #10	PTRHD1 (ENSBMSG00010012561) #11	CENPO (ENSBMSG00010012541) #12	ADCY3 (ENSBMSG00010012510) #13	DNAJC27 (ENSBMSG00010012472) #14	EFR3B (ENSBMSG00010012424) #15	POMC (ENSBMSG00010012400) #16	DNMT3A (ENSBMSG00010012344) #17	ENSBMSG00010012314	DTNB (ENSBMSG00010012231)	ASXL2 (ENSBMSG00010012153) #20	KIF3C (ENSBMSG00010012120) #21	RAB10 (ENSBMSG00010012106) #22	HADHA (ENSBMSG00010011954) #25	HADHB (ENSBMSG00010011872)	ADGRF3 (ENSBMSG00010011811)	SELENOI (ENSBMSG00010011740)	DRC1 (ENSBMSG00010011621)	OTOF (ENSBMSG00010011447)	FAM166C (ENSBMSG00010011346)	CIB4 (ENSBMSG00010011318)	KCNK3 (ENSBMSG00010011291)	SLC35F6 (ENSBMSG00010011273)	CENPA (ENSBMSG00010011244)	DPYSL5 (ENSBMSG00010011203)	MAPRE3 (ENSBMSG00010011178)	TMEM214 (ENSBMSG00010011131)	AGBL5 (ENSBMSG00010011101)
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959.d #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b.m #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693	ENSGT00940000158032	ENSGT00390000016516
Sperm whale	MODERN SPECIES	3	SF3B6 (ENSPCTG00005018047)	FAM228B (ENSPCTG00005018071) #7	PFN4 (ENSPCTG00005018269)	ITSN2 (ENSPCTG00005018639) #9	NCOA1 (ENSPCTG00005020989) #10	ENSPCTG00005021078	PTRHD1 (ENSPCTG00005021089) #11	CENPO (ENSPCTG00005021111) #12	ADCY3 (ENSPCTG00005021158) #13	DNAJC27 (ENSPCTG00005021182) #14	EFR3B (ENSPCTG00005021246) #15	POMC (ENSPCTG00005021388) #16	DNMT3A (ENSPCTG00005021441) #17	DTNB (ENSPCTG00005021592)	ASXL2 (ENSPCTG00005021682) #20	RAB10 (ENSPCTG00005021719) #22	GAREM2 (ENSPCTG00005021751) #24	HADHA (ENSPCTG00005021814) #25	HADHB (ENSPCTG00005004125)	ENSPCTG00005004220	SELENOI (ENSPCTG00005004235)	DRC1 (ENSPCTG00005004253)	ENSPCTG00005004272	OTOF (ENSPCTG00005004362)	ENSPCTG00005004838	ENSPCTG00005004849	CENPA (ENSPCTG00005004881)	MAPRE3 (ENSPCTG00005004904)	TMEM214 (ENSPCTG00005004939)	AGBL5 (ENSPCTG00005005070)	KHK (ENSPCTG00005005126)
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959.d #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b.m #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.k	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693	ENSGT00940000158032	ENSGT00390000016516
Dolphin	MODERN SPECIES	2959																RAB10 (ENSTTRG00000010192) #22	GAREM2 (ENSTTRG00000010196) #24	HADHA (ENSTTRG00000010204) #25	HADHB (ENSTTRG00000010217)	SELENOI (ENSTTRG00000010232)	DRC1 (ENSTTRG00000010239)	OTOF (ENSTTRG00000010249)	CIB4 (ENSTTRG00000010269)	KCNK3 (ENSTTRG00000010273)	SLC35F6 (ENSTTRG00000010274)	CENPA (ENSTTRG00000010278)	DPYSL5 (ENSTTRG00000010281)
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959.d #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b.m #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.k	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693	ENSGT00940000158032	ENSGT00390000016516
Vaquita	MODERN SPECIES	4	PFN4 (ENSPSNG00000006828)	ENSPSNG00000006856 #8	ITSN2 (ENSPSNG00000007059) #9	NCOA1 (ENSPSNG00000007384) #10	ENSPSNG00000007435	ADCY3 (ENSPSNG00000007484) #13	CENPO (ENSPSNG00000007599) #12	DNAJC27 (ENSPSNG00000007648) #14	EFR3B (ENSPSNG00000007711) #15	POMC (ENSPSNG00000008036) #16	DNMT3A (ENSPSNG00000008093) #17	ENSPSNG00000008291 #18	ENSPSNG00000008385	ENSPSNG00000008422 #20	KIF3C (ENSPSNG00000008462) #21	RAB10 (ENSPSNG00000008511) #22	GAREM2 (ENSPSNG00000008565) #24	HADHA (ENSPSNG00000008638) #25	HADHB (ENSPSNG00000008833)	SELENOI (ENSPSNG00000009045)	DRC1 (ENSPSNG00000009090)	OTOF (ENSPSNG00000009430)	CIB4 (ENSPSNG00000010868)	KCNK3 (ENSPSNG00000010967)	SLC35F6 (ENSPSNG00000011008)	CENPA (ENSPSNG00000011049)	DPYSL5 (ENSPSNG00000011087)	MAPRE3 (ENSPSNG00000011141)	TMEM214 (ENSPSNG00000011216)	AGBL5 (ENSPSNG00000011301)	EMILIN1 (ENSPSNG00000004344)
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00940000154259.l.q.a.b	ENSGT00950000183021.b #10	ENSGT00500000044959.d #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b.m #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B.k.a	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693	ENSGT00940000158032	ENSGT00390000016516
Narwhal	MODERN SPECIES	305	FAM228B (ENSMMNG00015008593) #7	ENSMMNG00015008570 #8	ITSN2 (ENSMMNG00015008479) #9	ENSMMNG00015008406	NCOA1 (ENSMMNG00015008366) #10	PTRHD1 (ENSMMNG00015008347) #11	CENPO (ENSMMNG00015008336) #12	ADCY3 (ENSMMNG00015008323) #13	DNAJC27 (ENSMMNG00015008298) #14	EFR3B (ENSMMNG00015008257) #15	POMC (ENSMMNG00015008233) #16	DNMT3A (ENSMMNG00015008178) #17	ENSMMNG00015008102 #18	ASXL2 (ENSMMNG00015008012) #20	KIF3C (ENSMMNG00015007955) #21	RAB10 (ENSMMNG00015007937) #22	GAREM2 (ENSMMNG00015007895) #24	HADHA (ENSMMNG00015007825) #25	HADHB (ENSMMNG00015007735)	SELENOI (ENSMMNG00015007642)	ENSMMNG00015007617	OTOF (ENSMMNG00015007376)	CIB4 (ENSMMNG00015007284)	KCNK3 (ENSMMNG00015007259)	SLC35F6 (ENSMMNG00015007235)	ENSMMNG00015007210	DPYSL5 (ENSMMNG00015007179)	MAPRE3 (ENSMMNG00015007148)	TMEM214 (ENSMMNG00015007098)	AGBL5 (ENSMMNG00015007054)	OST4 (ENSMMNG00015007039)
Beluga whale	MODERN SPECIES	37	TP53I3 (ENSDLEG00000003236)	PFN4 (ENSDLEG00000003231)	FAM228B (ENSDLEG00000003177) #7	ITSN2 (ENSDLEG00000001766) #9	ENSDLEG00000001459	NCOA1 (ENSDLEG00000001416) #10	CENPO (ENSDLEG00000001398) #12	ADCY3 (ENSDLEG00000001361) #13	DNAJC27 (ENSDLEG00000001321) #14	EFR3B (ENSDLEG00000001247) #15	POMC (ENSDLEG00000001217) #16	DNMT3A (ENSDLEG00000001166) #17	DTNB (ENSDLEG00000001035)	ASXL2 (ENSDLEG00000000951) #20	KIF3C (ENSDLEG00000000897) #21	RAB10 (ENSDLEG00000000876) #22	GAREM2 (ENSDLEG00000000854) #24	ENSDLEG00000000841	HADHA (ENSDLEG00000000819) #25	HADHB (ENSDLEG00000000782)	SELENOI (ENSDLEG00000000757)	DRC1 (ENSDLEG00000000706)	OTOF (ENSDLEG00000000377)	ENSDLEG00000000258	KCNK3 (ENSDLEG00000000236)	SLC35F6 (ENSDLEG00000000163)	ENSDLEG00000000124	DPYSL5 (ENSDLEG00000021816)	MAPRE3 (ENSDLEG00000021812)	TMEM214 (ENSDLEG00000021807)	AGBL5 (ENSDLEG00000021803)
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Carnivora	ANCESTRAL SPECIES	19	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Caniformia	ANCESTRAL SPECIES	18	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Canidae	ANCESTRAL SPECIES	46	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00990000213351	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b.cb	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Red fox	MODERN SPECIES	189	PFN4 (ENSVVUG00000010887)	FAM228B (ENSVVUG00000010899) #7	ITSN2 (ENSVVUG00000011007) #9	NCOA1 (ENSVVUG00000013134) #10	ADCY3 (ENSVVUG00000014909) #13	CENPO (ENSVVUG00000015237) #12	DNAJC27 (ENSVVUG00000015241) #14	EFR3B (ENSVVUG00000015262) #15	POMC (ENSVVUG00000015392) #16	DNMT3A (ENSVVUG00000015409) #17	DTNB (ENSVVUG00000015770) #18	ASXL2 (ENSVVUG00000015856) #20	ENSVVUG00000015876	KIF3C (ENSVVUG00000015885) #21	ENSVVUG00000015893	RAB10 (ENSVVUG00000015895) #22	GAREM2 (ENSVVUG00000015897) #24	HADHA (ENSVVUG00000015907) #25	HADHB (ENSVVUG00000015924)	ADGRF3 (ENSVVUG00000015946)	SELENOI (ENSVVUG00000015951)	DRC1 (ENSVVUG00000015954)	CIB4 (ENSVVUG00000016001)	ENSVVUG00000016007	KCNK3 (ENSVVUG00000016010)	SLC35F6 (ENSVVUG00000016012)	CENPA (ENSVVUG00000016014)	DPYSL5 (ENSVVUG00000016028)	ENSVVUG00000016046	MAPRE3 (ENSVVUG00000016049)	TMEM214 (ENSVVUG00000016053)
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00530000064185.a #7	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00990000213351	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b.cb	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Dog	MODERN SPECIES	8	ENSCAFG00845023204	ENSCAFG00845023435	ENSCAFG00845023479	ITSN2 (ENSCAFG00845023729) #9	NCOA1 (ENSCAFG00845024663) #10	PTRHD1 (ENSCAFG00845024920) #11	CENPO (ENSCAFG00845024979) #12	ADCY3 (ENSCAFG00845025117) #13	DNAJC27 (ENSCAFG00845025362) #14	EFR3B (ENSCAFG00845025549) #15	POMC (ENSCAFG00845026092) #16	DNMT3A (ENSCAFG00845026173) #17	DTNB (ENSCAFG00845026621) #18	ASXL2 (ENSCAFG00845027213) #20	KIF3C (ENSCAFG00845027365) #21	RAB10 (ENSCAFG00845027419) #22	GAREM2 (ENSCAFG00845027452) #24	HADHA (ENSCAFG00845027504) #25	ENSCAFG00845027719	ADGRF3 (ENSCAFG00845027979)	SELENOI (ENSCAFG00845028041)	DRC1 (ENSCAFG00845028116)	OTOF (ENSCAFG00845028326)	FAM166C (ENSCAFG00845028780)	OTOF (ENSCAFG00845028822)	KCNK3 (ENSCAFG00845028885)	SLC35F6 (ENSCAFG00845028914)	CENPA (ENSCAFG00845028982)	DPYSL5 (ENSCAFG00845029023)	MAPRE3 (ENSCAFG00845005806)	SLC5A6 (ENSCAFG00845005860)
Dingo	MODERN SPECIES	223	PFN4 (ENSCAFG00020025574)	FAM228B (ENSCAFG00020025572) #7	ENSCAFG00020025533	ITSN2 (ENSCAFG00020025489) #9	NCOA1 (ENSCAFG00020025385) #10	CENPO (ENSCAFG00020025375) #12	ADCY3 (ENSCAFG00020025293) #13	DNAJC27 (ENSCAFG00020025277) #14	EFR3B (ENSCAFG00020025238) #15	POMC (ENSCAFG00020025221) #16	DNMT3A (ENSCAFG00020025176) #17	ENSCAFG00020025160 #18	ASXL2 (ENSCAFG00020025120) #20	KIF3C (ENSCAFG00020025103) #21	ENSCAFG00020025102	RAB10 (ENSCAFG00020025098) #22	GAREM2 (ENSCAFG00020025095) #24	HADHA (ENSCAFG00020024925) #25	ENSCAFG00020024883	ADGRF3 (ENSCAFG00020024878)	SELENOI (ENSCAFG00020024863)	DRC1 (ENSCAFG00020024833)	OTOF (ENSCAFG00020024797)	FAM166C (ENSCAFG00020024794)	CIB4 (ENSCAFG00020024789)	KCNK3 (ENSCAFG00020024787)	SLC35F6 (ENSCAFG00020024784)	CENPA (ENSCAFG00020024783)	DPYSL5 (ENSCAFG00020024773)	MAPRE3 (ENSCAFG00020024770)	TMEM214 (ENSCAFG00020024765)
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Mustelinae	ANCESTRAL SPECIES	55	ENSGT00940000161217	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B
American mink	MODERN SPECIES	7	ITSN2 (ENSNVIG00000012550) #9	NCOA1 (ENSNVIG00000012372) #10	ENSNVIG00000012352 #11	CENPO (ENSNVIG00000012341) #12	ADCY3 (ENSNVIG00000012293) #13	DNAJC27 (ENSNVIG00000012276) #14	EFR3B (ENSNVIG00000012176) #15	DNMT3A (ENSNVIG00000012095) #17	ENSNVIG00000012087	ENSNVIG00000011719	ENSNVIG00000011667	ENSNVIG00000011664	ASXL2 (ENSNVIG00000011638) #20	KIF3C (ENSNVIG00000011611) #21	ENSNVIG00000011606	RAB10 (ENSNVIG00000011586) #22	GAREM2 (ENSNVIG00000011575) #24	HADHA (ENSNVIG00000011530) #25	HADHB (ENSNVIG00000011410)	ADGRF3 (ENSNVIG00000011368)	SELENOI (ENSNVIG00000011344)	CC164 (ENSNVIG00000011276)	OTOF (ENSNVIG00000011081)	FAM166C (ENSNVIG00000011066)	CIB4 (ENSNVIG00000011050)	KCNK3 (ENSNVIG00000011039)	RIMS4 (ENSNVIG00000011024)	YWHAB (ENSNVIG00000011016)	PABPC1L (ENSNVIG00000010962)	TOMM34 (ENSNVIG00000010955)	STK4 (ENSNVIG00000010914)
Ursidae	ANCESTRAL SPECIES	9	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Giant Panda	MODERN SPECIES	14	ENSAMEG00000025446 #7	ENSAMEG00000002768 #8	ITSN2 (ENSAMEG00000002721) #9	NCOA1 (ENSAMEG00000002653) #10	PTRHD1 (ENSAMEG00000026884) #11	CENPO (ENSAMEG00000002642) #12	ADCY3 (ENSAMEG00000002572) #13	DNAJC27 (ENSAMEG00000002554) #14	EFR3B (ENSAMEG00000002518) #15	POMC (ENSAMEG00000002511) #16	DNMT3A (ENSAMEG00000002443) #17	ENSAMEG00000002424 #18	ENSAMEG00000028157	ASXL2 (ENSAMEG00000002397) #20	KIF3C (ENSAMEG00000002379) #21	ENSAMEG00000002360 #22	GAREM2 (ENSAMEG00000026829) #24	HADHA (ENSAMEG00000002313) #25	HADHB (ENSAMEG00000002288)	ADGRF3 (ENSAMEG00000002279)	SELENOI (ENSAMEG00000002275)	DRC1 (ENSAMEG00000002238)	OTOF (ENSAMEG00000002163)	FAM166C (ENSAMEG00000002155)	CIB4 (ENSAMEG00000002150)	KCNK3 (ENSAMEG00000002147)	SLC35F6 (ENSAMEG00000002126)	CENPA (ENSAMEG00000002112)	DPYSL5 (ENSAMEG00000002012)	MAPRE3 (ENSAMEG00000001977)	TMEM214 (ENSAMEG00000001938)
Ursus	ANCESTRAL SPECIES	27	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00390000007479.z	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00910000147123	ENSGT00490000043329.a.b
Polar bear	MODERN SPECIES	223	TP53I3 (ENSUMAG00000022832)	PFN4 (ENSUMAG00000022828)	FAM228B (ENSUMAG00000022825) #7	ENSUMAG00000022822 #8	ITSN2 (ENSUMAG00000022686) #9	NCOA1 (ENSUMAG00000022630) #10	CENPO (ENSUMAG00000022621) #12	ADCY3 (ENSUMAG00000022574) #13	DNAJC27 (ENSUMAG00000022558) #14	EFR3B (ENSUMAG00000022545) #15	DNMT3A (ENSUMAG00000022397) #17	ENSUMAG00000022354 #18	ASXL2 (ENSUMAG00000022345) #20	ENSUMAG00000022340	KIF3C (ENSUMAG00000022313) #21	RAB10 (ENSUMAG00000022303) #22	HADHA (ENSUMAG00000022289) #25	HADHB (ENSUMAG00000022281)	ENSUMAG00000022277	SELENOI (ENSUMAG00000022269)	DRC1 (ENSUMAG00000022194)	OTOF (ENSUMAG00000022140)	FAM166C (ENSUMAG00000022134)	ENSUMAG00000022131	SLC35F6 (ENSUMAG00000022128)	CENPA (ENSUMAG00000022125)	DPYSL5 (ENSUMAG00000022079)	ENSUMAG00000022073	MAPRE3 (ENSUMAG00000022068)	TMEM214 (ENSUMAG00000021997)	AGBL5 (ENSUMAG00000021982)
American black bear	MODERN SPECIES	1610																RAB10 (ENSUAMG00000008895) #22	GAREM2 (ENSUAMG00000008890) #24	HADHA (ENSUAMG00000008883) #25	HADHB (ENSUAMG00000008876)	ENSUAMG00000008871	ENSUAMG00000008867
Felidae	ANCESTRAL SPECIES	3	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Panthera	ANCESTRAL SPECIES	2	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Tiger	MODERN SPECIES	287										DNAJC27 (ENSPTIG00000013443) #14	EFR3B (ENSPTIG00000007845) #15	ENSPTIG00000006949 #16	DNMT3A (ENSPTIG00000017909) #17	DTNB (ENSPTIG00000019750)	KIF3C (ENSPTIG00000015228) #21	RAB10 (ENSPTIG00000014861) #22	HADHA (ENSPTIG00000014280) #25	HADHB (ENSPTIG00000009770)	ADGRF3 (ENSPTIG00000002861)	SELENOI (ENSPTIG00000021799)	DRC1 (ENSPTIG00000020695)	OTOF (ENSPTIG00000021218)	FAM166C (ENSPTIG00000019670)	CIB4 (ENSPTIG00000018756)	ENSPTIG00000018187	SLC35F6 (ENSPTIG00000017375)	CENPA (ENSPTIG00000017121)	DPYSL5 (ENSPTIG00000016404)	ENSPTIG00000016113	TMEM214 (ENSPTIG00000012413)	AGBL5 (ENSPTIG00000011353)
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000161217	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
leopard	MODERN SPECIES		TP53I3 (ENSPPRG00000023247)	PFN4 (ENSPPRG00000023234)	FAM228B (ENSPPRG00000023222) #7	ITSN2 (ENSPPRG00000023119) #9	NCOA1 (ENSPPRG00000022996) #10	PTRHD1 (ENSPPRG00000022961) #11	CENPO (ENSPPRG00000022951) #12	ADCY3 (ENSPPRG00000022933) #13	DNAJC27 (ENSPPRG00000022920) #14	EFR3B (ENSPPRG00000022872) #15	POMC (ENSPPRG00000022853) #16	DNMT3A (ENSPPRG00000022803) #17	DTNB (ENSPPRG00000000149)	ASXL2 (ENSPPRG00000000239) #20	KIF3C (ENSPPRG00000000256) #21	RAB10 (ENSPPRG00000000261) #22	GAREM2 (ENSPPRG00000000295) #24	HADHA (ENSPPRG00000000312) #25	HADHB (ENSPPRG00000000393)	ADGRF3 (ENSPPRG00000000445)	SELENOI (ENSPPRG00000000475)	DRC1 (ENSPPRG00000000495)	OTOF (ENSPPRG00000000530)	FAM166C (ENSPPRG00000000546)	CIB4 (ENSPPRG00000000556)	KCNK3 (ENSPPRG00000000563)	SLC35F6 (ENSPPRG00000000570)	CENPA (ENSPPRG00000000575)	DPYSL5 (ENSPPRG00000000590)	MAPRE3 (ENSPPRG00000000603)	TMEM214 (ENSPPRG00000000634)
lion	MODERN SPECIES	3	PFN4 (ENSPLOG00000000771)	FAM228B (ENSPLOG00000000790) #7	ITSN2 (ENSPLOG00000000988) #9	NCOA1 (ENSPLOG00000001183) #10	PTRHD1 (ENSPLOG00000001311) #11	CENPO (ENSPLOG00000001323) #12	ADCY3 (ENSPLOG00000001367) #13	DNAJC27 (ENSPLOG00000001417) #14	EFR3B (ENSPLOG00000001467) #15	POMC (ENSPLOG00000001533) #16	DNMT3A (ENSPLOG00000001561) #17	ENSPLOG00000001685 #18	ASXL2 (ENSPLOG00000001803) #20	ENSPLOG00000001827	KIF3C (ENSPLOG00000001843) #21	RAB10 (ENSPLOG00000001873) #22	GAREM2 (ENSPLOG00000001895) #24	HADHA (ENSPLOG00000001953) #25	ENSPLOG00000002151	ENSPLOG00000002330	ENSPLOG00000002341	ADGRF3 (ENSPLOG00000002389)	SELENOI (ENSPLOG00000002450)	DRC1 (ENSPLOG00000002473)	OTOF (ENSPLOG00000002573)	FAM166C (ENSPLOG00000002878)	CIB4 (ENSPLOG00000002901)	KCNK3 (ENSPLOG00000002929)	SLC35F6 (ENSPLOG00000002941)	CENPA (ENSPLOG00000002966)	DPYSL5 (ENSPLOG00000003005)
Cat	MODERN SPECIES	2	FAM228B (ENSFCAG00000028526) #7	ENSFCAG00000037101 #8	ITSN2 (ENSFCAG00000004308) #9	NCOA1 (ENSFCAG00000025791) #10	PTRHD1 (ENSFCAG00000003648) #11	CENPO (ENSFCAG00000028869) #12	ADCY3 (ENSFCAG00000003651) #13	DNAJC27 (ENSFCAG00000038919) #14	EFR3B (ENSFCAG00000024517) #15	POMC (ENSFCAG00000003658) #16	DNMT3A (ENSFCAG00000003659) #17	DTNB (ENSFCAG00000000232) #18	ENSFCAG00000037234	ASXL2 (ENSFCAG00000003836) #20	KIF3C (ENSFCAG00000015635) #21	RAB10 (ENSFCAG00000024401) #22	GAREM2 (ENSFCAG00000023983) #24	HADHA (ENSFCAG00000014933) #25	HADHB (ENSFCAG00000014934)	ENSFCAG00000050388	ENSFCAG00000047852	ADGRF3 (ENSFCAG00000009009)	SELENOI (ENSFCAG00000032898)	DRC1 (ENSFCAG00000000034)	OTOF (ENSFCAG00000000035)	CA3H2orf70 (ENSFCAG00000000036)	CIB4 (ENSFCAG00000000368)	KCNK3 (ENSFCAG00000040829)	SLC35F6 (ENSFCAG00000026864)	CENPA (ENSFCAG00000019293)	DPYSL5 (ENSFCAG00000001652)
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00960000189637	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Greater horseshoe bat	MODERN SPECIES	4	FAM228A (ENSRFEG00010017718) #8	ITSN2 (ENSRFEG00010017613) #9	ENSRFEG00010017543	NCOA1 (ENSRFEG00010017430) #10	PTRHD1 (ENSRFEG00010017391) #11	CENPO (ENSRFEG00010017262) #12	ADCY3 (ENSRFEG00010017185) #13	DNAJC27 (ENSRFEG00010017106) #14	EFR3B (ENSRFEG00010016983) #15	POMC (ENSRFEG00010016944) #16	DNMT3A (ENSRFEG00010016679) #17	ENSRFEG00010016372 #18	ENSRFEG00010016277	ASXL2 (ENSRFEG00010016207) #20	KIF3C (ENSRFEG00010016154) #21	RAB10 (ENSRFEG00010016112) #22	GAREM2 (ENSRFEG00010016065) #24	HADHA (ENSRFEG00010015960) #25	HADHB (ENSRFEG00010015789)	ADGRF3 (ENSRFEG00010015582)	SELENOI (ENSRFEG00010015540)	DRC1 (ENSRFEG00010015514)	OTOF (ENSRFEG00010015369)	FAM166C (ENSRFEG00010015294)	CIB4 (ENSRFEG00010015172)	KCNK3 (ENSRFEG00010015096)	SLC35F6 (ENSRFEG00010015042)	CENPA (ENSRFEG00010014848)	DPYSL5 (ENSRFEG00010014789)	MAPRE3 (ENSRFEG00010014677)	TMEM214 (ENSRFEG00010014138)
Microbat	MODERN SPECIES	1515													ENSMLUG00000014167 #18	ASXL2 (ENSMLUG00000014831) #20	KIF3C (ENSMLUG00000014837) #21	RAB10 (ENSMLUG00000009937) #22	ENSMLUG00000009953 #24	ENSMLUG00000023835 #25
Megabat	MODERN SPECIES	3498															KIF3C (ENSPVAG00000001072) #21	RAB10 (ENSPVAG00000001074) #22	GAREM2 (ENSPVAG00000001075) #24	HADHA (ENSPVAG00000001076) #25
Equus	ANCESTRAL SPECIES	7	ENSGT00390000017067	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Donkey	MODERN SPECIES	26	ENSEASG00005027350	FAM228B (ENSEASG00005029839) #7	ENSEASG00005009998 #8	ITSN2 (ENSEASG00005010089) #9	NCOA1 (ENSEASG00005010550) #10	ENSEASG00005034326 #11	CENPO (ENSEASG00005010597) #12	ADCY3 (ENSEASG00005010572) #13	DNAJC27 (ENSEASG00005010598) #14	EFR3B (ENSEASG00005010599) #15	POMC (ENSEASG00005010600) #16	DNMT3A (ENSEASG00005010712) #17	DTNB (ENSEASG00005011562)	ASXL2 (ENSEASG00005011580) #20	KIF3C (ENSEASG00005011585) #21	RAB10 (ENSEASG00005011588) #22	GAREM2 (ENSEASG00005011592) #24	HADHA (ENSEASG00005011596) #25	ENSEASG00005022116	ADGRF3 (ENSEASG00005022225)	SELENOI (ENSEASG00005012697)	DRC1 (ENSEASG00005012692)	OTOF (ENSEASG00005012660)	FAM166C (ENSEASG00005012638)	CIB4 (ENSEASG00005012635)	KCNK3 (ENSEASG00005028893)	SLC35F6 (ENSEASG00005012632)	CENPA (ENSEASG00005012631)	DPYSL5 (ENSEASG00005012628)	MAPRE3 (ENSEASG00005012624)	TMEM214 (ENSEASG00005012620)
Horse	MODERN SPECIES	6	ENSECAG00000014593 #8	ITSN2 (ENSECAG00000020425) #9	ENSECAG00000028792	NCOA1 (ENSECAG00000017819) #10	PTRHD1 (ENSECAG00000017730) #11	CENPO (ENSECAG00000017127) #12	ADCY3 (ENSECAG00000008344) #13	DNAJC27 (ENSECAG00000024595) #14	EFR3B (ENSECAG00000016528) #15	POMC (ENSECAG00000016388) #16	DNMT3A (ENSECAG00000025086) #17	DTNB (ENSECAG00000014987)	ENSECAG00000054333	ASXL2 (ENSECAG00000010885) #20	KIF3C (ENSECAG00000000746) #21	RAB10 (ENSECAG00000032798) #22	GAREM2 (ENSECAG00000023175) #24	HADHA (ENSECAG00000015725) #25	HADHB (ENSECAG00000054935)	ADGRF3 (ENSECAG00000007460)	SELENOI (ENSECAG00000046166)	DRC1 (ENSECAG00000020710)	OTOF (ENSECAG00000002692)	CIB4 (ENSECAG00000020061)	KCNK3 (ENSECAG00000038775)	SLC35F6 (ENSECAG00000017703)	CENPA (ENSECAG00000016271)	DPYSL5 (ENSECAG00000024403)	ENSECAG00000016515	TMEM214 (ENSECAG00000010689)	AGBL5 (ENSECAG00000007490)
Atlantogenata	ANCESTRAL SPECIES	14	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Xenarthra	ANCESTRAL SPECIES	648																ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C
Sloth	MODERN SPECIES	4407																RAB10 (ENSCHOG00000004748) #22
Armadillo	MODERN SPECIES	392						NPVF (ENSDNOG00000018761)	C7orf31 (ENSDNOG00000048979)	ENSDNOG00000047486	OSBPL3 (ENSDNOG00000008460)	GSDME (ENSDNOG00000007884)	PALS2 (ENSDNOG00000007871)	ENSDNOG00000038117	ENSDNOG00000048956	NPY (ENSDNOG00000002909)	ENSDNOG00000035629	RAB10 (ENSDNOG00000045834) #22	GAREM2 (ENSDNOG00000033219) #24	HADHA (ENSDNOG00000006972) #25	HADHB (ENSDNOG00000006999)	ADGRF3 (ENSDNOG00000007015)	SELENOI (ENSDNOG00000007037)	DRC1 (ENSDNOG00000038749)	OTOF (ENSDNOG00000037747)
Afrotheria	ANCESTRAL SPECIES	26	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Tenrec	MODERN SPECIES	9108																RAB10 (ENSETEG00000010795) #22
Afrotheria_a	ANCESTRAL SPECIES	26	ENSGT00530000064185.a #7	ENSGT00530000064185.b #8	ENSGT00940000164632.b	ENSGT00940000155936.b #9	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Elephant	MODERN SPECIES	197	ENSLAFG00000000618 #8	ENSLAFG00000032314	ITSN2 (ENSLAFG00000000620) #9	NCOA1 (ENSLAFG00000014442) #10	PTRHD1 (ENSLAFG00000014453) #11	CENPO (ENSLAFG00000014455) #12	ADCY3 (ENSLAFG00000014458) #13	DNAJC27 (ENSLAFG00000002742) #14	EFR3B (ENSLAFG00000013258) #15	POMC (ENSLAFG00000031034) #16	DNMT3A (ENSLAFG00000013263) #17	ENSLAFG00000013179 #18	ASXL2 (ENSLAFG00000002035) #20	KIF3C (ENSLAFG00000004381) #21	ENSLAFG00000030378	RAB10 (ENSLAFG00000027391) #22	GAREM2 (ENSLAFG00000002730) #24	HADHA (ENSLAFG00000002731) #25	HADHB (ENSLAFG00000008375)	ADGRF3 (ENSLAFG00000005262)	ENSLAFG00000020893	DRC1 (ENSLAFG00000001893)	OTOF (ENSLAFG00000012736)	FAM166C (ENSLAFG00000016384)	CIB4 (ENSLAFG00000016389)	KCNK3 (ENSLAFG00000012031)	SLC35F6 (ENSLAFG00000006862)	CENPA (ENSLAFG00000020873)	DPYSL5 (ENSLAFG00000013765)	MAPRE3 (ENSLAFG00000014552)	TMEM214 (ENSLAFG00000014558)
Hyrax	MODERN SPECIES	7607																RAB10 (ENSPCAG00000013441) #22
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00950000183021.b #10	ENSGT00500000044959 #11	ENSGT00390000016702 #12	ENSGT00940000156549.a.a #13	ENSGT00940000157133 #14	ENSGT00390000002143.b #15	ENSGT00390000016811 #16	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT01100000263514.B	ENSGT01030000234527.A.a.a.b	ENSGT00490000043329.a.b	ENSGT00390000002693
Common wonbat	MODERN SPECIES	574	STMN4 (ENSVURG00010001184)	NCOA1 (ENSVURG00010001108) #10	PTRHD1 (ENSVURG00010001076) #11	CENPO (ENSVURG00010001066) #12	ADCY3 (ENSVURG00010000999) #13	DNAJC27 (ENSVURG00010000971) #14	EFR3B (ENSVURG00010000919) #15	ENSVURG00010000874 #16	ENSVURG00010000869	DNMT3A (ENSVURG00010000794) #17	ENSVURG00010000721 #18	ENSVURG00010000697	ASXL2 (ENSVURG00010000667) #20	ENSVURG00010000654	KIF3C (ENSVURG00010000616) #21	RAB10 (ENSVURG00010000601) #22	GAREM2 (ENSVURG00010000581) #24	HADHA (ENSVURG00010000555) #25	HADHB (ENSVURG00010000535)	ENSVURG00010000497	SELENOI (ENSVURG00010000464)	DRC1 (ENSVURG00010000415)	OTOF (ENSVURG00010000174)	FAM166C (ENSVURG00010000107)	ENSVURG00010000101	KCNK3 (ENSVURG00010020970)	ENSVURG00010020969	SLC35F6 (ENSVURG00010020968)	ENSVURG00010020964	CENPA (ENSVURG00010020960)	DPYSL5 (ENSVURG00010020951)
koala	MODERN SPECIES	15	TRIM35 (ENSPCIG00000027513)	STMN4 (ENSPCIG00000025244)	NCOA1 (ENSPCIG00000025243) #10	PTRHD1 (ENSPCIG00000025242) #11	CENPO (ENSPCIG00000025241) #12	ADCY3 (ENSPCIG00000025240) #13	DNAJC27 (ENSPCIG00000025239) #14	EFR3B (ENSPCIG00000025238) #15	ENSPCIG00000025237 #16	DNMT3A (ENSPCIG00000025236) #17	ENSPCIG00000025235	ENSPCIG00000025234 #18	ENSPCIG00000025231	ASXL2 (ENSPCIG00000025232) #20	KIF3C (ENSPCIG00000025229) #21	RAB10 (ENSPCIG00000024427) #22	GAREM2 (ENSPCIG00000024425) #24	HADHA (ENSPCIG00000024420) #25	HADHB (ENSPCIG00000024419)	ADGRF3 (ENSPCIG00000024418)	SELENOI (ENSPCIG00000024416)	DRC1 (ENSPCIG00000024414)	OTOF (ENSPCIG00000024403)	FAM166C (ENSPCIG00000024393)	CIB4 (ENSPCIG00000024392)	KCNK3 (ENSPCIG00000024391)	SLC35F6 (ENSPCIG00000012050)	CENPA (ENSPCIG00000012054)	DPYSL5 (ENSPCIG00000036730)	MAPRE3 (ENSPCIG00000012066)	TMEM214 (ENSPCIG00000012073)
Wallaby	MODERN SPECIES	476																ENSMEUG00000011129 #22
Tasmanian devil	MODERN SPECIES	1	PTK2B (ENSSHAG00000029715)	ENSSHAG00000023575	ENSSHAG00000007155	ENSSHAG00000003234 #10	PTRHD1 (ENSSHAG00000005774) #11	CENPO (ENSSHAG00000005861) #12	ADCY3 (ENSSHAG00000006048) #13	DNAJC27 (ENSSHAG00000024931) #14	EFR3B (ENSSHAG00000002481) #15	ENSSHAG00000024476 #16	DNMT3A (ENSSHAG00000007509) #17	ENSSHAG00000009563 #18	ASXL2 (ENSSHAG00000012066) #20	KIF3C (ENSSHAG00000020830) #21	ENSSHAG00000030526	RAB10 (ENSSHAG00000032249) #22	GAREM2 (ENSSHAG00000021473) #24	HADHA (ENSSHAG00000014112) #25	HADHB (ENSSHAG00000014373)	ADGRF3 (ENSSHAG00000014566)	SELENOI (ENSSHAG00000024053)	DRC1 (ENSSHAG00000003011)	OTOF (ENSSHAG00000004180)	ENSSHAG00000026839	CIB4 (ENSSHAG00000021842)	KCNK3 (ENSSHAG00000021709)	SLC35F6 (ENSSHAG00000026267)	CENPA (ENSSHAG00000010305)	DPYSL5 (ENSSHAG00000010753)	MAPRE3 (ENSSHAG00000011741)	TMEM214 (ENSSHAG00000011811)
Opossum	MODERN SPECIES		TRIM35 (ENSMODG00000015914)	STMN4 (ENSMODG00000015911)	NCOA1 (ENSMODG00000015907) #10	ENSMODG00000023230	PTRHD1 (ENSMODG00000015895) #11	CENPO (ENSMODG00000015893) #12	ADCY3 (ENSMODG00000015887) #13	DNAJC27 (ENSMODG00000015869) #14	ENSMODG00000051458	EFR3B (ENSMODG00000015857) #15	POMC (ENSMODG00000015853) #16	DNMT3A (ENSMODG00000015850) #17	ENSMODG00000015846 #18	ASXL2 (ENSMODG00000015832) #20	KIF3C (ENSMODG00000015824) #21	RAB10 (ENSMODG00000015821) #22	GAREM2 (ENSMODG00000015817) #24	HADHA (ENSMODG00000015815) #25	HADHB (ENSMODG00000015809)	ADGRF3 (ENSMODG00000015803)	SELENOI (ENSMODG00000015800)	DRC1 (ENSMODG00000015797)	OTOF (ENSMODG00000015788)	FAM166C (ENSMODG00000015776)	CIB4 (ENSMODG00000015773)	KCNK3 (ENSMODG00000015769)	SLC35F6 (ENSMODG00000046989)	CENPA (ENSMODG00000049956)	DPYSL5 (ENSMODG00000015761)	MAPRE3 (ENSMODG00000015753)	TMEM214 (ENSMODG00000015750)
Platypus	MODERN SPECIES	20	KAT14 (ENSOANG00000001251)	ENSOANG00000001252	POLR3F (ENSOANG00000001253)	ENSOANG00000001254	SCARA3 (ENSOANG00000001256)	CCDC25 (ENSOANG00000000791)	ENSOANG00000015840	PBK (ENSOANG00000015839)	SCARA5 (ENSOANG00000015838)	NUGGC (ENSOANG00000015837)	ENSOANG00000022083	DNMT3A (ENSOANG00000015836) #17	ENSOANG00000015835 #18	ASXL2 (ENSOANG00000015834) #20	KIF3C (ENSOANG00000015833) #21	RAB10 (ENSOANG00000015832) #22	GAREM2 (ENSOANG00000015831) #24	HADHA (ENSOANG00000015830) #25	HADHB (ENSOANG00000015828)	ADGRF3 (ENSOANG00000015827)	SELENOI (ENSOANG00000000523)	DRC1 (ENSOANG00000000522)	OTOF (ENSOANG00000000520)	FAM166C (ENSOANG00000000519)	ENSOANG00000037767	CIB4 (ENSOANG00000000518)	KCNK3 (ENSOANG00000000517)	SLC35F6 (ENSOANG00000003585)	ENSOANG00000045223	DPYSL5 (ENSOANG00000000514)	MAPRE3 (ENSOANG00000040306)
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082
Lepidosauria	ANCESTRAL SPECIES	76	ENSGT00950000182902.a.d	ENSGT00940000154141.A	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b
tuatara	MODERN SPECIES	653															ENSSPUG00000003874 #21	RAB10 (ENSSPUG00000003883) #22	HADHA (ENSSPUG00000003948) #25	HADHB (ENSSPUG00000003973)
Episquamata	ANCESTRAL SPECIES		ENSGT00950000182902.a.d	ENSGT00940000154141.A	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00720000108839	ENSGT00940000158598	ENSGT00950000185082	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840	ENSGT00390000018634
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000018031	ENSGT00950000182902.a.d	ENSGT00940000154141.A	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00950000183117.b	ENSGT00720000108839	ENSGT00940000158598	ENSGT00990000211035	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT00940000158248.b	ENSGT00940000161840
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000003259	KHK (ENSPMRG00000003223)	ENSPMRG00000003173	EMILIN1 (ENSPMRG00000003143)	ENSPMRG00000003123	OST4 (ENSPMRG00000003112)	AGBL5 (ENSPMRG00000003053)	TMEM214 (ENSPMRG00000002974)	MAPRE3 (ENSPMRG00000002953)	DPYSL5 (ENSPMRG00000002929)	DNMT3A (ENSPMRG00000002898) #17	ENSPMRG00000002837 #18	ENSPMRG00000002820	ENSPMRG00000002794	KIF3C (ENSPMRG00000002785) #21	RAB10 (ENSPMRG00000002770) #22	GAREM2 (ENSPMRG00000002755) #24	HADHA (ENSPMRG00000001286) #25	HADHB (ENSPMRG00000000508)	ENSPMRG00000000492	ENSPMRG00000000477	ENSPMRG00000000442	SELENOI (ENSPMRG00000000396)	PBK (ENSPMRG00000000363)	ESCO2 (ENSPMRG00000000327)	ENSPMRG00000000305	CCDC25 (ENSPMRG00000000280)	SCARA3 (ENSPMRG00000000237)	CLU (ENSPMRG00000003336)	SLC35F6 (ENSPMRG00000003328)	KCNK3 (ENSPMRG00000003323)
Argentine black and white tegu	MODERN SPECIES	68	PREB (ENSSMRG00000013040)	ABHD1 (ENSSMRG00000013041)	CGREF1 (ENSSMRG00000013042)	KHK (ENSSMRG00000013043)	ENSSMRG00000013044	ENSSMRG00000013045	EMILIN1 (ENSSMRG00000013046)	AGBL5 (ENSSMRG00000013047)	TMEM214 (ENSSMRG00000013048)	MAPRE3 (ENSSMRG00000013049)	DPYSL5 (ENSSMRG00000013050)	DNMT3A (ENSSMRG00000013051) #17	ENSSMRG00000013053 #18	ASXL2 (ENSSMRG00000013055) #20	KIF3C (ENSSMRG00000013056) #21	RAB10 (ENSSMRG00000013058) #22	GAREM2 (ENSSMRG00000013059) #24	HADHA (ENSSMRG00000013060) #25	HADHB (ENSSMRG00000013061)	ADGRF3 (ENSSMRG00000013062)	ENSSMRG00000013063	SELENOI (ENSSMRG00000013064)	PBK (ENSSMRG00000013066)	ESCO2 (ENSSMRG00000013067)	CCDC25 (ENSSMRG00000013068)	SCARA3 (ENSSMRG00000013069)	CLU (ENSSMRG00000013070)	SLC35F6 (ENSSMRG00000013072)	KCNK3 (ENSSMRG00000013073)	ENSSMRG00000013074	ENSSMRG00000013077
Toxicofera	ANCESTRAL SPECIES	36	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00720000108839	ENSGT00940000158598	ENSGT00950000185082	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00390000016811 #16	ENSGT00390000002143.b #15
Elapidae	ANCESTRAL SPECIES		ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00950000183117.b	ENSGT00720000108839	ENSGT00940000158598	ENSGT00950000185082	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT01030000234597.a.b.a	ENSGT00390000016811 #16	ENSGT00390000002143.b #15	ENSGT00950000183074.B.a.a
Elapidae_a	ANCESTRAL SPECIES	59	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00950000183117.b	ENSGT00720000108839	ENSGT00940000158598	ENSGT00950000185082	ENSGT00990000211035	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT01030000234597.a.b.a	ENSGT00390000002143.b #15	ENSGT00950000183074.B.a.a
Acanthophiinae	ANCESTRAL SPECIES	11	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00950000183117.b	ENSGT00720000108839	ENSGT00940000158598	ENSGT00950000185082	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B	ENSGT00390000017237	ENSGT01030000234597.a.b.a	ENSGT00390000002143.b #15	ENSGT00950000183074.B.a.a	ENSGT00940000153804.A
Mainland tiger snake	MODERN SPECIES	38	ATRAID (ENSNSUG00000005527)	SLC5A6 (ENSNSUG00000005526)	PREB (ENSNSUG00000005524)	ABHD1 (ENSNSUG00000005523)	ENSNSUG00000005522	KHK (ENSNSUG00000005521)	ENSNSUG00000005519	EMILIN1 (ENSNSUG00000005518)	AGBL5 (ENSNSUG00000005482)	MAPRE3 (ENSNSUG00000005481)	DPYSL5 (ENSNSUG00000005480)	DNMT3A (ENSNSUG00000005469) #17	ENSNSUG00000005459 #18	ASXL2 (ENSNSUG00000005446) #20	KIF3C (ENSNSUG00000005443) #21	RAB10 (ENSNSUG00000005440) #22	GAREM2 (ENSNSUG00000005416) #24	HADHA (ENSNSUG00000005414) #25	HADHB (ENSNSUG00000005411)	SELENOI (ENSNSUG00000005342)	PBK (ENSNSUG00000005340)	ESCO2 (ENSNSUG00000005333)	ENSNSUG00000005331	CCDC25 (ENSNSUG00000005321)	SCARA3 (ENSNSUG00000005320)	CLU (ENSNSUG00000005317)	SLC35F6 (ENSNSUG00000005316)	ENSNSUG00000005315	STMN4 (ENSNSUG00000005301)	POMC (ENSNSUG00000005300) #16	EFR3B (ENSNSUG00000005297) #15
Eastern brown snake	MODERN SPECIES	40	ENSPTXG00000010447	KHK (ENSPTXG00000010448)	ENSPTXG00000010449	EMILIN1 (ENSPTXG00000010450)	OST4 (ENSPTXG00000010451)	AGBL5 (ENSPTXG00000010452)	TMEM214 (ENSPTXG00000010453)	MAPRE3 (ENSPTXG00000010454)	DPYSL5 (ENSPTXG00000010455)	DNMT3A (ENSPTXG00000010459) #17	ENSPTXG00000011350 #18	ENSPTXG00000011351 #18	ENSPTXG00000011352	ASXL2 (ENSPTXG00000011353) #20	KIF3C (ENSPTXG00000011354) #21	RAB10 (ENSPTXG00000011360) #22	GAREM2 (ENSPTXG00000011361) #24	HADHA (ENSPTXG00000011364) #25	HADHB (ENSPTXG00000011365)	SELENOI (ENSPTXG00000011366)	ENSPTXG00000011367	ENSPTXG00000011369	ENSPTXG00000011370	ENSPTXG00000011372	CCDC25 (ENSPTXG00000011373)	SCARA3 (ENSPTXG00000005084)	CLU (ENSPTXG00000005085)	SLC35F6 (ENSPTXG00000005086)	STMN4 (ENSPTXG00000005087)
Blue-lipped sea krait	MODERN SPECIES	6704																RAB10 (ENSLLTG00000007586) #22
Indian cobra	MODERN SPECIES		PREB (ENSNNAG00000002904)	ABHD1 (ENSNNAG00000002918)	ENSNNAG00000002931	KHK (ENSNNAG00000002947)	ENSNNAG00000002968	EMILIN1 (ENSNNAG00000002993)	OST4 (ENSNNAG00000003002)	AGBL5 (ENSNNAG00000003010)	TMEM214 (ENSNNAG00000003033)	MAPRE3 (ENSNNAG00000000162)	DPYSL5 (ENSNNAG00000000166)	DNMT3A (ENSNNAG00000000172) #17	ENSNNAG00000000188 #18	ASXL2 (ENSNNAG00000000202) #20	KIF3C (ENSNNAG00000000207) #21	RAB10 (ENSNNAG00000000210) #22	GAREM2 (ENSNNAG00000000215) #24	HADHA (ENSNNAG00000000220) #25	HADHB (ENSNNAG00000000228)	SELENOI (ENSNNAG00000000233)	SCARA3 (ENSNNAG00000000236)	CLU (ENSNNAG00000000239)	SLC35F6 (ENSNNAG00000000242)	STMN4 (ENSNNAG00000000248)	ENSNNAG00000000253 #16	EFR3B (ENSNNAG00000000274) #15	SCARA5 (ENSNNAG00000000358)	OTOF (ENSNNAG00000000403)	FAM166C (ENSNNAG00000000454)	CIB4 (ENSNNAG00000000465)	KCNK3 (ENSNNAG00000000490)
Lizard	MODERN SPECIES	1747																ENSACAG00000036571 #22
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082
Archosauria	ANCESTRAL SPECIES	3	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598
Aves	ANCESTRAL SPECIES	38	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598
African ostrich	MODERN SPECIES	432													ENSSCUG00000009465 #18	ASXL2 (ENSSCUG00000009480) #20	KIF3C (ENSSCUG00000009486) #21	RAB10 (ENSSCUG00000009489) #22	HADHA (ENSSCUG00000009494) #25	HADHB (ENSSCUG00000009497)	ENSSCUG00000009500	ENSSCUG00000009503	SELENOI (ENSSCUG00000009509)
Neognathae	ANCESTRAL SPECIES	2	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT01100000263560.b	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00390000008161.b	ENSGT00940000157269.a.a.d	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091	ENSGT00950000183074.B.a.a	ENSGT00720000108839	ENSGT00940000158598	ENSGT00390000004380
Phasianidae	ANCESTRAL SPECIES	28	ENSGT00940000160891	ENSGT00940000154473.b	ENSGT00940000154004.b	ENSGT00940000164252.a.b	ENSGT01020000230412.B.a.c.a	ENSGT00940000161480	ENSGT00390000018632	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000157269.a.a.d	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091	ENSGT00950000183074.B.a.a	ENSGT00720000108839	ENSGT00940000158598	ENSGT00390000004380
Phasianidae_b	ANCESTRAL SPECIES	29	ENSGT00940000160891	ENSGT00940000154473.b	ENSGT00940000154004.b	ENSGT00940000164252.a.b	ENSGT01020000230412.B.a.c.a	ENSGT00940000161480	ENSGT00390000018632	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000157269.a.a.d	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b	ENSGT00390000007091	ENSGT00950000183074.B.a.a	ENSGT00720000108839	ENSGT00940000158598	ENSGT00390000004380
Turkey	MODERN SPECIES	11	NRBP1 (ENSMGAG00000014070)	PPM1G (ENSMGAG00000014072)	ENSMGAG00000014073	ZNF513 (ENSMGAG00000014074)	SNX17 (ENSMGAG00000014075)	EIF2B4 (ENSMGAG00000014076)	ENSMGAG00000014953	OST4 (ENSMGAG00000021231)	AGBL5 (ENSMGAG00000014071)	TMEM214 (ENSMGAG00000014954)	DPYSL5 (ENSMGAG00000008087)	DNMT3A (ENSMGAG00000014078) #17	ENSMGAG00000014080 #18	ASXL2 (ENSMGAG00000014086) #20	ENSMGAG00000019139 #21	RAB10 (ENSMGAG00000014088) #22	GAREM2 (ENSMGAG00000022446) #24	HADHA (ENSMGAG00000014090) #25	HADHB (ENSMGAG00000014094)	ENSMGAG00000015651	ENSMGAG00000022025	SELENOI (ENSMGAG00000014102)	PTK2B (ENSMGAG00000014100)	ENSMGAG00000014105	EPHX2 (ENSMGAG00000014107)	ENSMGAG00000014114	NUGGC (ENSMGAG00000020967)	SCARA5 (ENSMGAG00000014119)	PBK (ENSMGAG00000014121)	ESCO2 (ENSMGAG00000014122)	CCDC25 (ENSMGAG00000014123)
Chicken	MODERN SPECIES	22	ENSGALG00010009286	UCN (ENSGALG00010011472)	TRIM54 (ENSGALG00010009309)	ENSGALG00010009322	ENSGALG00010009332	SLC30A3 (ENSGALG00010009343)	GTF3C2 (ENSGALG00010009351)	MAPRE3 (ENSGALG00010009392)	DPYSL5 (ENSGALG00010009437)	DNMT3A (ENSGALG00010009469) #17	ENSGALG00010011908 #18	ENSGALG00010009526	ASXL2 (ENSGALG00010009383) #20	KIF3C (ENSGALG00010009530) #21	ENSGALG00010009537	RAB10 (ENSGALG00010009540) #22	GAREM2 (ENSGALG00010009546) #24	HADHA (ENSGALG00010009551) #25	HADHB (ENSGALG00010009562)	ENSGALG00010009615	SELENOI (ENSGALG00010009876)	PTK2B (ENSGALG00010009972)	CHRNA2 (ENSGALG00010010053)	EPHX2 (ENSGALG00010010136)	ENSGALG00010011927	ENSGALG00010010153	NUGGC (ENSGALG00010010171)	SCARA5 (ENSGALG00010010206)	PBK (ENSGALG00010010218)	ESCO2 (ENSGALG00010010243)	CCDC25 (ENSGALG00010010284)
Japanese quail	MODERN SPECIES	21	AGBL5 (ENSCJPG00005011992)	TMEM214 (ENSCJPG00005011993)	MPV17 (ENSCJPG00005012115)	ENSCJPG00005012123	UCN (ENSCJPG00005012124)	ENSCJPG00005012125	GTF3C2 (ENSCJPG00005012126)	MAPRE3 (ENSCJPG00005012216)	DPYSL5 (ENSCJPG00005012217)	ENSCJPG00005012251	DNMT3A (ENSCJPG00005012252) #17	ENSCJPG00005012492 #18	ASXL2 (ENSCJPG00005012928) #20	KIF3C (ENSCJPG00005012932) #21	ENSCJPG00005012964	RAB10 (ENSCJPG00005012965) #22	GAREM2 (ENSCJPG00005012966) #24	HADHA (ENSCJPG00005012967) #25	HADHB (ENSCJPG00005012968)	ENSCJPG00005012969	ENSCJPG00005012970	SELENOI (ENSCJPG00005012971)	PTK2B (ENSCJPG00005012972)	CHRNA2 (ENSCJPG00005012973)	EPHX2 (ENSCJPG00005012975)	ENSCJPG00005012976	ENSCJPG00005012977	SCARA5 (ENSCJPG00005012978)	PBK (ENSCJPG00005012979)	ESCO2 (ENSCJPG00005012980)	CCDC25 (ENSCJPG00005012981)
Anatidae	ANCESTRAL SPECIES	96										ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00390000008161.b	ENSGT00940000157269.a.a.d	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00940000164057.a	ENSGT00940000164057.b
Duck	MODERN SPECIES	21				GPN1 (ENSAPLG00000003530)	ZNF512 (ENSAPLG00000003840)	FNDC4 (ENSAPLG00000004123)	ENSAPLG00000004165	IFT172 (ENSAPLG00000004257)	ENSAPLG00000030912	NRBP1 (ENSAPLG00000005366)	PPM1G (ENSAPLG00000021278)	ENSAPLG00000018551	ENSAPLG00000004980 #18	ENSAPLG00000028298	ASXL2 (ENSAPLG00000005877) #20	RAB10 (ENSAPLG00000018031) #22	GAREM2 (ENSAPLG00000025887) #24	HADHA (ENSAPLG00000003803) #25	HADHB (ENSAPLG00000003436)	ENSAPLG00000003434	SELENOI (ENSAPLG00000009483)	ENSAPLG00000012254	ENSAPLG00000012641	FAM166C (ENSAPLG00000010916)	ENSAPLG00000021729	ENSAPLG00000017924	ENSAPLG00000012374	EFR3B (ENSAPLG00000012384) #15	ENSAPLG00000022349	DNAJC27 (ENSAPLG00000012805) #14	ADCY3 (ENSAPLG00000013028) #13
Pink-footed goose	MODERN SPECIES	318											DPYSL5 (ENSABRG00000011572)	DNMT3A (ENSABRG00000011654) #17	ENSABRG00000011679 #18	ASXL2 (ENSABRG00000011729) #20	KIF3C (ENSABRG00000011741) #21	RAB10 (ENSABRG00000011744) #22	GAREM2 (ENSABRG00000011755) #24	HADHA (ENSABRG00000011792) #25	HADHB (ENSABRG00000011814)	ENSABRG00000011839
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT01100000263560.b	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000161395	ENSGT00390000018031	ENSGT00950000182902.a.d	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT01100000263560.b	ENSGT00940000158238	ENSGT00390000004380	ENSGT00950000185082	ENSGT00940000158598	ENSGT00720000108839
Golden eagle	MODERN SPECIES	6	TCF23 (ENSACCG00020014727)	PREB (ENSACCG00020014745)	ABHD1 (ENSACCG00020014767)	ENSACCG00020014792	EMILIN1 (ENSACCG00020014857)	OST4 (ENSACCG00020014905)	AGBL5 (ENSACCG00020014917)	TMEM214 (ENSACCG00020014942)	MAPRE3 (ENSACCG00020014992)	DPYSL5 (ENSACCG00020015004)	DNMT3A (ENSACCG00020015155) #17	ENSACCG00020015332 #18	ASXL2 (ENSACCG00020005555) #20	ENSACCG00020005579	KIF3C (ENSACCG00020005593) #21	RAB10 (ENSACCG00020005616) #22	GAREM2 (ENSACCG00020005641) #24	HADHA (ENSACCG00020005747) #25	HADHB (ENSACCG00020005793)	ENSACCG00020005815	SELENOI (ENSACCG00020005836)	OTOF (ENSACCG00020005945)	FAM166C (ENSACCG00020006030)	KCNK3 (ENSACCG00020006041)	SLC35F6 (ENSACCG00020006053)	CLU (ENSACCG00020006066)	ENSACCG00020006081	SCARA3 (ENSACCG00020006092)	CCDC25 (ENSACCG00020006104)	ESCO2 (ENSACCG00020006123)	PBK (ENSACCG00020006136)
Kakapo	MODERN SPECIES	23	GTF3C2 (ENSSHBG00005017620)	TMEM214 (ENSSHBG00005017609)	OST4 (ENSSHBG00005017605)	AGBL5 (ENSSHBG00005017594)	EMILIN1 (ENSSHBG00005017589)	ENSSHBG00005017581	KHK (ENSSHBG00005017576)	PREB (ENSSHBG00005017570)	ATRAID (ENSSHBG00005017557)	MAPRE3 (ENSSHBG00005017542)	DPYSL5 (ENSSHBG00005017531)	DNMT3A (ENSSHBG00005017508) #17	ENSSHBG00005015404 #18	ASXL2 (ENSSHBG00005015259) #20	KIF3C (ENSSHBG00005015239) #21	RAB10 (ENSSHBG00005015229) #22	GAREM2 (ENSSHBG00005015219) #24	HADHA (ENSSHBG00005015191) #25	HADHB (ENSSHBG00005015179)	ENSSHBG00005015164	ENSSHBG00005015158	SELENOI (ENSSHBG00005015151)	OTOF (ENSSHBG00005011947)	FAM166C (ENSSHBG00005011584)	KCNK3 (ENSSHBG00005011570)	SLC35F6 (ENSSHBG00005011551)	CLU (ENSSHBG00005011529)	ENSSHBG00005011516	SCARA3 (ENSSHBG00005011496)	CCDC25 (ENSSHBG00005011479)	ENSSHBG00005011457
Passeriformes	ANCESTRAL SPECIES	48	ENSGT00940000155731	ENSGT00390000018031	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h	ENSGT00940000155086.C	ENSGT00940000158248.b
Passeriformes_d	ANCESTRAL SPECIES	58													ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000156975.t.a ##22	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h.j.a	ENSGT00940000155086.C	ENSGT00940000158248.b
Passeriformes_g	ANCESTRAL SPECIES	78													ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000156975.t.a ##22	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h.j.a	ENSGT00940000155086.C
Passeroidea	ANCESTRAL SPECIES	84													ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.h.j.a	ENSGT00940000154393.g.a	ENSGT00940000155086.C
Common canary	MODERN SPECIES	128															KIF3C (ENSSCAG00000015678) #21	RAB10 (ENSSCAG00000015676) #22	HADHA (ENSSCAG00000015669) #25	HADHB (ENSSCAG00000015666)
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	202																ENSFALG00000028952 #22
Flycatcher	MODERN SPECIES	275										ENSFALG00000024442	DTNB (ENSFALG00000012409)	ENSFALG00000023000 ##20	ENSFALG00000026256 #20	ENSFALG00000026262	ENSFALG00000023692 #21	RAB10 (ENSFALG00000012484) #22	HADHA (ENSFALG00000012494) #25	HADHB (ENSFALG00000012517)	ENSFALG00000012537
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00390000018031	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598
Chinese turtle	MODERN SPECIES	1878																RAB10 (ENSPSIG00000017938) #22
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000161395	ENSGT00390000018031	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b.c	ENSGT01030000234527.A.a.a.b.d	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598
Testudinidae	ANCESTRAL SPECIES	44	ENSGT00390000018031	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b.d	ENSGT00490000043329.a.b.c	ENSGT01030000234527.A.a.a.b.d	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00940000154393.g.a.n	ENSGT00940000154393.h	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005006364	PREB (ENSGEVG00005006391)	ABHD1 (ENSGEVG00005006443)	ENSGEVG00005006479	KHK (ENSGEVG00005006497)	EMILIN1 (ENSGEVG00005006581)	OST4 (ENSGEVG00005006651)	AGBL5 (ENSGEVG00005006674)	TMEM214 (ENSGEVG00005006748)	MAPRE3 (ENSGEVG00005006924)	DPYSL5 (ENSGEVG00005006947)	DNMT3A (ENSGEVG00005006987) #17	ENSGEVG00005007053 #18	ASXL2 (ENSGEVG00005007100) #20	KIF3C (ENSGEVG00005007123) #21	RAB10 (ENSGEVG00005007178) #22	GAREM2 (ENSGEVG00005007252) #24	HADHA (ENSGEVG00005007454) #25	HADHB (ENSGEVG00005007566)	ADGRF3 (ENSGEVG00005007643)	ENSGEVG00005007728	ENSGEVG00005007753	ENSGEVG00005007778	ENSGEVG00005007798	SELENOI (ENSGEVG00005007815)	DRC1 (ENSGEVG00005007884)	OTOF (ENSGEVG00005008198)	FAM166C (ENSGEVG00005008643)	KCNK3 (ENSGEVG00005008695)	SLC35F6 (ENSGEVG00005008714)	CLU (ENSGEVG00005008738)
Abingdon island giant tortoise	MODERN SPECIES	639																RAB10 (ENSCABG00000014293) #22	GAREM2 (ENSCABG00000014256) #24	HADHA (ENSCABG00000014250) #25	HADHB (ENSCABG00000014227)	ENSCABG00000014220
Emydidae	ANCESTRAL SPECIES	87										ENSGT01030000234527.A.a.a.b.d	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00990000205100.E.a	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598
painted turtle	MODERN SPECIES	828									ENSCPBG00000010860	DNMT3A (ENSCPBG00000010847) #17	ENSCPBG00000010813 #18	ENSCPBG00000010794	ENSCPBG00000010791	ASXL2 (ENSCPBG00000010779) #20	KIF3C (ENSCPBG00000010772) #21	RAB10 (ENSCPBG00000010768) #22	GAREM2 (ENSCPBG00000010750) #24	HADHA (ENSCPBG00000010733) #25	HADHB (ENSCPBG00000010721)	ENSCPBG00000010715	ENSCPBG00000010711	ENSCPBG00000010704	ENSCPBG00000010703	SELENOI (ENSCPBG00000010697)	DRC1 (ENSCPBG00000010693)	OTOF (ENSCPBG00000010661)	FAM166C (ENSCPBG00000010645)	CIB4 (ENSCPBG00000010641)	ENSCPBG00000010639	KCNK3 (ENSCPBG00000010637)	ENSCPBG00000010636
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	548																ENSTMTG00000011514 #22
Three-toed box turtle	MODERN SPECIES	258						TMEM214 (ENSTMTG00000011120)	AGBL5 (ENSTMTG00000011035)	ENSTMTG00000010979	DNMT3A (ENSTMTG00000010635) #17	ENSTMTG00000010572	ENSTMTG00000009665 #18	ENSTMTG00000009512	ENSTMTG00000009489	ASXL2 (ENSTMTG00000009477) #20	KIF3C (ENSTMTG00000009444) #21	RAB10 (ENSTMTG00000009428) #22	GAREM2 (ENSTMTG00000009405) #24	HADHA (ENSTMTG00000009349) #25	HADHB (ENSTMTG00000009311)	ENSTMTG00000009285	ENSTMTG00000009277	ENSTMTG00000009252
Anura	ANCESTRAL SPECIES	34	ENSGT00390000018031	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.a.a ##18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541.d	ENSGT00940000161395	ENSGT00940000155731	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00940000166976	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000008808	ENSLLEG00000008851	ENSLLEG00000008879	ENSLLEG00000008886	ENSLLEG00000008901	ENSLLEG00000008916	ENSLLEG00000009000	OST4 (ENSLLEG00000009104)	AGBL5 (ENSLLEG00000009135)	ENSLLEG00000009260	ENSLLEG00000009309	DNMT3A (ENSLLEG00000009608) #17	ENSLLEG00000010075	KIF3C (ENSLLEG00000010140) #21	ENSLLEG00000010412	RAB10 (ENSLLEG00000010480) #22	ENSLLEG00000010550	GAREM2 (ENSLLEG00000010583) #24	ENSLLEG00000010679	ENSLLEG00000010695	ENSLLEG00000010776	ENSLLEG00000010789	ENSLLEG00000010811	ENSLLEG00000010824	ENSLLEG00000010845	ENSLLEG00000010857	ENSLLEG00000010867	ENSLLEG00000010883	HADHA (ENSLLEG00000005730) #25	ENSLLEG00000005800	HADHB (ENSLLEG00000005858)
Tetrapoda	DUPLICATION
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Aves	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Passeriformes_d	ANCESTRAL SPECIES	58										ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000156975.t.a ##22	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h.j.a	ENSGT00940000155086.C	ENSGT00940000158248.b
Passeriformes_g	ANCESTRAL SPECIES	78										ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000156975.t.a ##22	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h.j.a	ENSGT00940000155086.C
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000156975.t.a ##22
Zebra finch	MODERN SPECIES	23	ENSTGUG00000028646 #24	ENSTGUG00000027186	ENSTGUG00000022620 #25	ENSTGUG00000014433	ENSTGUG00000029279	ENSTGUG00000019591	ENSTGUG00000015724	ENSTGUG00000021161	ENSTGUG00000026856	ENSTGUG00000029004	ENSTGUG00000027496	ENSTGUG00000024393	ENSTGUG00000027137	ENSTGUG00000024576 #20	ENSTGUG00000025070 #21	ENSTGUG00000018963 ##22	ENSTGUG00000028224 #24	ENSTGUG00000029360	ENSTGUG00000014477 #25	ENSTGUG00000020253	ENSTGUG00000019652	ENSTGUG00000014407	ENSTGUG00000028069	ENSTGUG00000022181	ENSTGUG00000021006	ENSTGUG00000024251	SCARA5 (ENSTGUG00000022151)	ENSTGUG00000019284	ENSTGUG00000021901	ENSTGUG00000027492	CLU (ENSTGUG00000028547)
Medium ground finch	MODERN SPECIES	333													ENSGFOG00000013192 #18	ENSGFOG00000013194	KIF3C (ENSGFOG00000013199) #21	RAB10 (ENSGFOG00000013203) ##22	HADHA (ENSGFOG00000013213) #25	HADHB (ENSGFOG00000013239)	ENSGFOG00000013244	ENSGFOG00000013245	SELENOI (ENSGFOG00000013249)
Tetrapoda	ANCESTRAL SPECIES	117	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00980000198967	ENSGT00940000158032	ENSGT00390000016516	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25
Amniota	ANCESTRAL SPECIES	1	ENSGT00950000182902.a.d	ENSGT00940000154141.A	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380
Sauria	ANCESTRAL SPECIES	1	ENSGT00950000182902.a.d	ENSGT00940000154141.A	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238
Archosauria	ANCESTRAL SPECIES	3	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00390000008161.b	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000161840	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380
Aves	ANCESTRAL SPECIES	38	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380
Neognathae	ANCESTRAL SPECIES	2	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT00940000165510	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000177261	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00390000018634	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT01100000263560.b	ENSGT00940000158238
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000156975.t.b ##22
Passeriformes	ANCESTRAL SPECIES	48	ENSGT00390000018031	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.b #18	ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h	ENSGT00940000155086.C	ENSGT00940000158248.b
Passeriformes_d	ANCESTRAL SPECIES	58												ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000156975.t.a ##22	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h.j.a	ENSGT00940000155086.C	ENSGT00940000158248.b
Passeriformes_g	ANCESTRAL SPECIES	78												ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000156975.t.a ##22	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.g.a	ENSGT00940000154393.h.j.a	ENSGT00940000155086.C
Passeroidea	ANCESTRAL SPECIES	84												ENSGT00940000164272	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b.p #21	ENSGT00940000156975.u #22	ENSGT00940000156975.t.b ##22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000154393.h.j.a	ENSGT00940000154393.g.a	ENSGT00940000155086.C
Zebra finch	MODERN SPECIES	23	ENSTGUG00000014964	ENSTGUG00000023298	ENSTGUG00000020990	ENSTGUG00000022267	ENSTGUG00000023158	OST4 (ENSTGUG00000028212)	ENSTGUG00000023136	ENSTGUG00000024716	ENSTGUG00000028117	DPYSL5 (ENSTGUG00000028796)	DNMT3A (ENSTGUG00000020883) #17	ENSTGUG00000026716 #18	ENSTGUG00000022206	ENSTGUG00000021185 #20	ENSTGUG00000023276 #21	ENSTGUG00000021481 ##22	ENSTGUG00000028646 #24	ENSTGUG00000027186	ENSTGUG00000022620 #25	ENSTGUG00000014433	ENSTGUG00000029279	ENSTGUG00000019591	ENSTGUG00000015724	ENSTGUG00000021161	ENSTGUG00000026856	ENSTGUG00000029004	ENSTGUG00000027496	ENSTGUG00000024393	ENSTGUG00000027137	ENSTGUG00000024576 #20	ENSTGUG00000025070 #21
Great tit	MODERN SPECIES	281														ENSPMJG00000001146	KIF3C (ENSPMJG00000001150) #21	RAB10 (ENSPMJG00000001155) ##22	GAREM2 (ENSPMJG00000001158) #24	HADHA (ENSPMJG00000001169) #25	HADHB (ENSPMJG00000001177)	ENSPMJG00000001200
Anura	ANCESTRAL SPECIES	34	ENSGT00390000018632	ENSGT00390000018031	ENSGT00950000182902.a.d	ENSGT00950000185281	ENSGT00390000007458.i	ENSGT01030000234633.A	ENSGT00390000016516	ENSGT00940000158032	ENSGT00390000002693	ENSGT00490000043329.a.b	ENSGT01030000234527.A.a.a.b	ENSGT00940000155459 #17	ENSGT00940000153897.b.a.a.a ##18	ENSGT00520000055578.a.b #20	ENSGT00940000153739.a.b #21	ENSGT00940000156975.t.b ##22	ENSGT00940000156975.u #22	ENSGT00530000063834.e.b #24	ENSGT00940000154677 #25	ENSGT01030000234626.A.b	ENSGT00940000161541.d	ENSGT00940000161395	ENSGT00940000155731	ENSGT00940000153804.A	ENSGT00940000155086.C	ENSGT00940000166976	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380
Frog	MODERN SPECIES	5	efr3b (ENSXETG00000017509) #15	pomc (ENSXETG00000017532) #16	ENSXETG00000030926	stmn4 (ENSXETG00000017530)	ptk2b (ENSXETG00000017538)	chrna2 (ENSXETG00000017553)	ephx2 (ENSXETG00000017581)	ENSXETG00000046510	ENSXETG00000039990	ENSXETG00000035690	ENSXETG00000044272	ENSXETG00000046509	ENSXETG00000044020	asxl2 (ENSXETG00000003167) #20	kif3c (ENSXETG00000024790) #21	rab10 (ENSXETG00000044662) ##22	garem2 (ENSXETG00000033300) #24	hadha (ENSXETG00000026457) #25	hadhb (ENSXETG00000003203)	ENSXETG00000042101	slc5a6 (ENSXETG00000043966)	ENSXETG00000046711	ENSXETG00000041658	ENSXETG00000045469	ENSXETG00000037814	ENSXETG00000047749	ENSXETG00000044673	ENSXETG00000048160	ENSXETG00000041471	ENSXETG00000046706	ENSXETG00000047836