Rodentia_A ANCESTRAL SPECIES 20 ENSGT00940000155800 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 #10 ENSGT00390000010434.a #11 ENSGT00390000012556 #12 ENSGT00390000004612 #13 ENSGT00950000183177.a.a.b #15 ENSGT00940000159983 #16 ENSGT00390000002398 #17 ENSGT00390000005197.a.b #18 ENSGT01100000263563.c.b #19 ENSGT00390000015965 #20 ENSGT00390000000214.a.b #21 ENSGT00940000157221 #22 ENSGT00940000160197 #23 ENSGT00940000153404.b #24 ENSGT00940000153648.b #25 ENSGT00390000013778 #26 ENSGT00940000159709 #27 ENSGT00940000156247 #28 ENSGT00940000157949 #29 ENSGT00900000143434 ENSGT00940000157456 #30 ENSGT00940000163662 #31 ENSGT00940000162884 #32 ENSGT00940000162201 #33 ENSGT00390000010054.b #34 ENSGT00390000017929 #35 ENSGT00940000155358 #36 Hystricomorpha ANCESTRAL SPECIES 26 ENSGT00940000155800 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 #10 ENSGT00390000010434.a #11 ENSGT00390000012556 #12 ENSGT00390000004612 #13 ENSGT00950000183177.a.a.b #15 ENSGT00940000159983 #16 ENSGT00390000002398 #17 ENSGT00390000005197.a.b #18 ENSGT01100000263563.c.b #19 ENSGT00390000015965 #20 ENSGT00390000000214.a.b #21 ENSGT00940000157221 #22 ENSGT00940000160197 #23 ENSGT00940000153404.b #24 ENSGT00940000153648.b #25 ENSGT00390000013778 #26 ENSGT00940000159709 #27 ENSGT00940000156247 #28 ENSGT00940000157949 #29 ENSGT00940000157456 #30 ENSGT00940000163662 #31 ENSGT00940000162884 #32 ENSGT00940000162201 #33 ENSGT00390000010054.b #34 ENSGT00390000017929 #35 ENSGT00940000155358 #36 ENSGT00590000083165 #37 Hystricomorpha_a ANCESTRAL SPECIES 23 ENSGT00940000155800 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 #10 ENSGT00390000010434.a #11 ENSGT00390000012556 #12 ENSGT00390000004612 #13 ENSGT00950000183177.a.a.b #15 ENSGT00940000159983 #16 ENSGT00390000002398 #17 ENSGT00390000005197.a.b #18 ENSGT01100000263563.c.b #19 ENSGT00390000015965 #20 ENSGT00390000000214.a.b #21 ENSGT00940000157221 #22 ENSGT00940000160197 #23 ENSGT00940000153404.b #24 ENSGT00940000153648.b #25 ENSGT00390000013778 #26 ENSGT00940000159709 #27 ENSGT00940000156247 #28 ENSGT00940000157949 #29 ENSGT00940000157456 #30 ENSGT00940000163662 #31 ENSGT00940000162884 #32 ENSGT00940000162201 #33 ENSGT00390000010054.b #34 ENSGT00390000017929 #35 ENSGT00940000155358 #36 ENSGT00590000083165 #37 Hystricomorpha_b ANCESTRAL SPECIES 37 ENSGT00950000183137.b.a ENSGT00940000155800 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 #10 ENSGT00390000010434.a #11 ENSGT00390000012556 #12 ENSGT00390000004612 #13 ENSGT00950000183177.a.a.b #15 ENSGT00940000159983 #16 ENSGT00390000002398 #17 ENSGT00390000005197.a.b #18 ENSGT01100000263563.c.b #19 ENSGT00390000015965 #20 ENSGT00390000000214.a.b #21 ENSGT00940000157221 #22 ENSGT00940000160197 #23 ENSGT00940000153404.b #24 ENSGT00940000153648.b #25 ENSGT00390000013778 #26 ENSGT00940000159709 #27 ENSGT00940000156247 #28 ENSGT00940000157949 #29 ENSGT00940000157456 #30 ENSGT00940000163662 #31 ENSGT00940000162884 #32 ENSGT00940000162201 #33 ENSGT00390000010054.b #34 ENSGT00390000017929 #35 ENSGT00940000155358 #36 ENSGT00590000083165 #37 Long-tailed chinchilla MODERN SPECIES 150 SEPSECS (ENSCLAG00000001790) #10 PI4K2B (ENSCLAG00000001759) #11 ZCCHC4 (ENSCLAG00000003884) #12 ANAPC4 (ENSCLAG00000003544) #13 ENSCLAG00000002958 #14 SLC34A2 (ENSCLAG00000002636) #15 SEL1L3 (ENSCLAG00000002362) #16 SMIM20 (ENSCLAG00000002089) #17 RBPJ (ENSCLAG00000002065) #18 CCKAR (ENSCLAG00000001729) #19 TBC1D19 (ENSCLAG00000001699) #20 STIM2 (ENSCLAG00000002849) #21 PCDH7 (ENSCLAG00000002605) #22 ARAP2 (ENSCLAG00000012467) #23 DTHD1 (ENSCLAG00000011952) #24 NWD2 (ENSCLAG00000010818) #25 C4orf19 (ENSCLAG00000010706) #26 RELL1 (ENSCLAG00000010401) #27 PGM2 (ENSCLAG00000010266) #28 TBC1D1 (ENSCLAG00000002236) #29 KLF3 (ENSCLAG00000004459) #30 TLR10 (ENSCLAG00000004336) #31 TLR1 (ENSCLAG00000017579) #32 TLR6 (ENSCLAG00000017630) #33 FAM114A1 (ENSCLAG00000003993) #34 TMEM156 (ENSCLAG00000003928) #35 KLHL5 (ENSCLAG00000002937) #36 WDR19 (ENSCLAG00000002775) #37 Degu MODERN SPECIES 47 PI4K2B (ENSODEG00000008999) #11 ENSODEG00000007449 #12 ENSODEG00000006972 ENSODEG00000019525 SLC34A2 (ENSODEG00000010839) #15 SEL1L3 (ENSODEG00000008196) #16 ENSODEG00000007321 #17 ENSODEG00000007277 #18 CCKAR (ENSODEG00000007359) #19 TBC1D19 (ENSODEG00000007019) #20 ENSODEG00000008773 #21 ENSODEG00000006518 #21 ENSODEG00000019413 ENSODEG00000006666 ENSODEG00000007600 PCDH7 (ENSODEG00000007387) #22 ENSODEG00000006993 ENSODEG00000019660 ARAP2 (ENSODEG00000006699) #23 DTHD1 (ENSODEG00000007001) #24 Guinea pig MODERN SPECIES 50 SOD3 (ENSCPOG00000035072) CCDC149 (ENSCPOG00000008895) LGI2 (ENSCPOG00000024161) SEPSECS (ENSCPOG00000035974) #10 PI4K2B (ENSCPOG00000015398) #11 ZCCHC4 (ENSCPOG00000011477) #12 ANAPC4 (ENSCPOG00000013122) #13 SLC34A2 (ENSCPOG00000024165) #15 SEL1L3 (ENSCPOG00000001037) #16 SMIM20 (ENSCPOG00000007684) #17 ENSCPOG00000040682 RBPJ (ENSCPOG00000007041) #18 CCKAR (ENSCPOG00000007046) #19 TBC1D19 (ENSCPOG00000003940) #20 STIM2 (ENSCPOG00000003408) #21 PCDH7 (ENSCPOG00000009659) #22 ARAP2 (ENSCPOG00000003037) #23 DTHD1 (ENSCPOG00000012919) #24 Naked mole-rat female MODERN SPECIES 1 ENSHGLG00000039602 ANAPC4 (ENSHGLG00000004987) #13 SLC34A2 (ENSHGLG00000012163) #15 SEL1L3 (ENSHGLG00000011887) #16 ENSHGLG00000042802 ENSHGLG00000048407 RBPJ (ENSHGLG00000010901) #18 CCKAR (ENSHGLG00000041648) #19 TBC1D19 (ENSHGLG00000009465) #20 ENSHGLG00000009110 #21 ENSHGLG00000038509 ENSHGLG00000008412 ENSHGLG00000020704 ENSHGLG00000038050 ENSHGLG00000042856 ENSHGLG00000007929 #22 ENSHGLG00000032804 ENSHGLG00000008642 ARAP2 (ENSHGLG00000001750) #23 DTHD1 (ENSHGLG00000006344) #24 ENSHGLG00000000242 ENSHGLG00000037767 NWD2 (ENSHGLG00000000298) #25 ENSHGLG00000040844 #26 ENSHGLG00000040492 #26 ENSHGLG00000043452 #27 PGM2 (ENSHGLG00000001842) #28 ENSHGLG00000002323 ENSHGLG00000003063 ENSHGLG00000000606 ENSHGLG00000019811 Sciuridae ANCESTRAL SPECIES 19 ENSGT00940000155800 ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 #10 ENSGT00390000010434.a #11 ENSGT00390000012556 #12 ENSGT00390000004612 #13 ENSGT00950000183177.a.a.b #15 ENSGT00940000159983 #16 ENSGT00390000002398 #17 ENSGT00390000005197.a.b #18 ENSGT01100000263563.c.b #19 ENSGT00390000015965 #20 ENSGT00390000000214.a.b #21 ENSGT00940000157221 #22 ENSGT00940000160197 #23 ENSGT00940000153404.b #24 ENSGT00940000153648.b #25 ENSGT00390000013778 #26 ENSGT00940000159709 #27 ENSGT00940000156247 #28 ENSGT00940000157949 #29 ENSGT00900000143434 ENSGT00940000157456 #30 ENSGT00940000163662 #31 ENSGT00940000162884 #32 ENSGT00940000162201 #33 ENSGT00990000210295 ENSGT00390000010054.b #34 ENSGT00390000017929 #35 Eurasian red squirrel MODERN SPECIES 18 ENSSVLG00005013482 #11 ZCCHC4 (ENSSVLG00005013382) #12 ANAPC4 (ENSSVLG00005013305) #13 SLC34A2 (ENSSVLG00005013163) #15 SEL1L3 (ENSSVLG00005012722) #16 SMIM20 (ENSSVLG00005012667) #17 RBPJ (ENSSVLG00005012303) #18 CCKAR (ENSSVLG00005012173) #19 TBC1D19 (ENSSVLG00005011905) #20 ENSSVLG00005011823 STIM2 (ENSSVLG00005011778) #21 ENSSVLG00005011737 ENSSVLG00005011695 ENSSVLG00005011631 ENSSVLG00005011572 PCDH7 (ENSSVLG00005011515) #22 ENSSVLG00005011423 ARAP2 (ENSSVLG00005010880) #23 DTHD1 (ENSSVLG00005010509) #24 ENSSVLG00005010441 #25 ENSSVLG00005010374 #25 C4orf19 (ENSSVLG00005010352) #26 RELL1 (ENSSVLG00005010318) #27 ENSSVLG00005010293 PGM2 (ENSSVLG00005010275) #28 TBC1D1 (ENSSVLG00005010172) #29 ENSSVLG00005010135 ENSSVLG00005010086 #30 ENSSVLG00005010070 TLR10 (ENSSVLG00005010051) #31 TLR1 (ENSSVLG00005010028) #32 Marmotini ANCESTRAL SPECIES 26 ENSGT00940000155800.e ENSGT00940000162224 ENSGT00390000015958 ENSGT00940000157294 ENSGT00390000007332 #10 ENSGT00390000010434.a #11 ENSGT00390000012556 #12 ENSGT00390000004612 #13 ENSGT00950000183177.a.a.b #15 ENSGT00940000159983 #16 ENSGT00390000002398 #17 ENSGT00390000005197.a.b #18 ENSGT01100000263563.c.b #19 ENSGT00390000015965 #20 ENSGT00390000000214.a.b #21 ENSGT00940000157221 #22 ENSGT00940000160197 #23 ENSGT00940000153404.b #24 ENSGT00940000153648.b #25 ENSGT00390000013778 #26 ENSGT00940000159709 #27 ENSGT00940000156247 #28 ENSGT00940000157949 #29 ENSGT00900000143434 ENSGT00940000157456 #30 ENSGT00940000163662 #31 ENSGT00940000162884 #32 ENSGT00940000162201 #33 ENSGT00390000010054.b #34 ENSGT00390000017929 #35 ENSGT00940000155358 #36 Marmotini_b ANCESTRAL SPECIES 48 ENSGT01030000234945 ENSGT00940000157221 #22 ENSGT00950000182841.b.a.a.b.b.p.a ENSGT00940000160197 #23 ENSGT00940000153404.b #24 ENSGT00940000153648.b #25 ENSGT00390000013778 #26 ENSGT00940000159709 #27 ENSGT00940000156247 #28 ENSGT00940000157949 #29 ENSGT00940000157456 #30 ENSGT00940000163662 #31 ENSGT00940000162884 #32 ENSGT00940000162201 #33 ENSGT00390000010054.b #34 ENSGT00390000017929 #35 ENSGT00940000155358 #36 Arctic ground squirrel MODERN SPECIES 2 ENSUPAG00010016796 PCDH7 (ENSUPAG00010016798) #22 ENSUPAG00010016821 ARAP2 (ENSUPAG00010016832) #23 DTHD1 (ENSUPAG00010016950) #24 NWD2 (ENSUPAG00010016964) #25 C4orf19 (ENSUPAG00010016983) #26 RELL1 (ENSUPAG00010016993) #27 PGM2 (ENSUPAG00010017012) #28 TBC1D1 (ENSUPAG00010017027) #29 KLF3 (ENSUPAG00010017209) #30 TLR10 (ENSUPAG00010017218) #31 TLR1 (ENSUPAG00010017233) #32 TLR6 (ENSUPAG00010017235) #33 FAM114A1 (ENSUPAG00010017240) #34 TMEM156 (ENSUPAG00010017254) #35 KLHL5 (ENSUPAG00010017266) #36 Squirrel MODERN SPECIES 82 PCDH7 (ENSSTOG00000009192) #22 ENSSTOG00000029131 ENSSTOG00000028351 ARAP2 (ENSSTOG00000019405) #23 DTHD1 (ENSSTOG00000003003) #24 NWD2 (ENSSTOG00000019543) #25 C4orf19 (ENSSTOG00000003425) #26 RELL1 (ENSSTOG00000001374) #27 PGM2 (ENSSTOG00000008176) #28 ENSSTOG00000020687 #29 KLF3 (ENSSTOG00000010881) #30 TLR1 (ENSSTOG00000021581) #32 TLR6 (ENSSTOG00000025480) #33 FAM114A1 (ENSSTOG00000001171) #34 TMEM156 (ENSSTOG00000004246) #35 KLHL5 (ENSSTOG00000007013) #36 Alpin marmot MODERN SPECIES 9 ENSMMMG00000017220 DHX15 (ENSMMMG00000017227) CCDC149 (ENSMMMG00000017248) LGI2 (ENSMMMG00000017262) SEPSECS (ENSMMMG00000017270) #10 PI4K2B (ENSMMMG00000017289) #11 ZCCHC4 (ENSMMMG00000017301) #12 ANAPC4 (ENSMMMG00000017319) #13 SLC34A2 (ENSMMMG00000017344) #15 SEL1L3 (ENSMMMG00000017356) #16 SMIM20 (ENSMMMG00000017386) #17 RBPJ (ENSMMMG00000017407) #18 CCKAR (ENSMMMG00000017438) #19 STIM2 (ENSMMMG00000017470) #21 ENSMMMG00000017503 ENSMMMG00000017519 #22 ARAP2 (ENSMMMG00000017527) #23 DTHD1 (ENSMMMG00000017544) #24 NWD2 (ENSMMMG00000017559) #25 ENSMMMG00000017574 C4orf19 (ENSMMMG00000017577) #26 RELL1 (ENSMMMG00000017587) #27 PGM2 (ENSMMMG00000017606) #28 TBC1D1 (ENSMMMG00000017620) #29 ENSMMMG00000017716 KLF3 (ENSMMMG00000017721) #30 TLR10 (ENSMMMG00000017725) #31 TLR1 (ENSMMMG00000017739) #32 TLR6 (ENSMMMG00000017761) #33 FAM114A1 (ENSMMMG00000017765) #34 TMEM156 (ENSMMMG00000017773) #35