Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Kangaroo rat	MODERN SPECIES	327	Ccdc149 (ENSDORG00000005628) #7	Lgi2 (ENSDORG00000005632) #8	Sepsecs (ENSDORG00000012655) #9	Pi4k2b (ENSDORG00000000491) #10	ENSDORG00000012901 #11	ENSDORG00000025086 #12	Slc34a2 (ENSDORG00000016105) #13	Sel1l3 (ENSDORG00000011773) #14	Smim20 (ENSDORG00000028531) #15	Rbpj (ENSDORG00000006352) #16	Cckar (ENSDORG00000006353) #17	Tbc1d19 (ENSDORG00000013790) #18	Stim2 (ENSDORG00000016610) #19	ENSDORG00000028755 #20	ENSDORG00000008260 #21	Pcdh7 (ENSDORG00000029117) #22	ENSDORG00000028110 #23	Arap2 (ENSDORG00000008160) #24	Dthd1 (ENSDORG00000001578) #25	Nwd2 (ENSDORG00000023758) #26	0610040J01Rik (ENSDORG00000011992) #27	Rell1 (ENSDORG00000008354) #28	Pgm2 (ENSDORG00000027647) #29	Tbc1d1 (ENSDORG00000010269) #30	Klf3 (ENSDORG00000023213) #31	Fam114a1 (ENSDORG00000010517) #32	ENSDORG00000010522 #33	Klhl5 (ENSDORG00000010524) #34	Wdr19 (ENSDORG00000010525) #35	Rfc1 (ENSDORG00000010527) #36	Klb (ENSDORG00000005905) #37
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Lesser Egyptian jerboa	MODERN SPECIES	58	Lgi2 (ENSJJAG00000021018) #8	Sepsecs (ENSJJAG00000001251) #9	Pi4k2b (ENSJJAG00000021578) #10	Zcchc4 (ENSJJAG00000016627) #11	ENSJJAG00000023054	Slc34a2 (ENSJJAG00000023515) #13	Sel1l3 (ENSJJAG00000018980) #14	Smim20 (ENSJJAG00000020734) #15	Rbpj (ENSJJAG00000024408) #16	Cckar (ENSJJAG00000009819) #17	Tbc1d19 (ENSJJAG00000015623) #18	Stim2 (ENSJJAG00000014478) #20	ENSJJAG00000011152	ENSJJAG00000011305	ENSJJAG00000024218	Pcdh7 (ENSJJAG00000021210) #22	Arap2 (ENSJJAG00000009614) #24	Dthd1 (ENSJJAG00000013536) #25	Nwd2 (ENSJJAG00000011338) #26	Rell1 (ENSJJAG00000015408) #28
Muroidea	ANCESTRAL SPECIES	17	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	568																Pcdh7 (ENSNGAG00000011901) #22
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Chinese hamster chok1gshd	MODERN SPECIES	44	Zcchc4 (ENSCGRG00001014205) #11	ENSCGRG00001016709	Anapc4 (ENSCGRG00001021562)	Slc34a2 (ENSCGRG00001019379) #13	Sel1l3 (ENSCGRG00001023792) #14	Smim20 (ENSCGRG00001010352) #15	ENSCGRG00001010832	Rbpj (ENSCGRG00001016640) #16	Cckar (ENSCGRG00001015331) #17	Tbc1d19 (ENSCGRG00001021066) #18	ENSCGRG00001004312	Stim2 (ENSCGRG00001012517) #20	ENSCGRG00001002941	ENSCGRG00001005160	ENSCGRG00001012415	Pcdh7 (ENSCGRG00001017637) #22	ENSCGRG00001018983	ENSCGRG00001009672	Arap2 (ENSCGRG00001019683) #24	Dthd1 (ENSCGRG00001007560) #25	ENSCGRG00001015981	ENSCGRG00001005701	Nwd2 (ENSCGRG00001014796) #26	0610040J01Rik (ENSCGRG00001016782) #27	ENSCGRG00001017215 #28	Pgm2 (ENSCGRG00001019866) #29	Tbc1d1 (ENSCGRG00001007939) #30	Klf3 (ENSCGRG00001011019) #31	ENSCGRG00001011588	Tlr1 (ENSCGRG00001012288)	Tlr6 (ENSCGRG00001012094)
Golden Hamster	MODERN SPECIES	663														ENSMAUG00000015885	ENSMAUG00000016216	Pcdh7 (ENSMAUG00000010506) #22	Arap2 (ENSMAUG00000008087) #24	Dthd1 (ENSMAUG00000005079) #25	Nwd2 (ENSMAUG00000004008) #26	0610040J01Rik (ENSMAUG00000001342) #27	Rell1 (ENSMAUG00000015257) #28	Pgm2 (ENSMAUG00000009577) #29	Tbc1d1 (ENSMAUG00000010694) #30	Klf3 (ENSMAUG00000000706) #31	Tlr1 (ENSMAUG00000000142)	Tlr6 (ENSMAUG00000007865)	Fam114a1 (ENSMAUG00000001743) #32	Tmem156 (ENSMAUG00000000185) #33	Klhl5 (ENSMAUG00000019052) #34	ENSMAUG00000008307	ENSMAUG00000004466 #35
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37
Prairie vole	MODERN SPECIES	349	Ddc (ENSMOCG00000014117)	Grb10 (ENSMOCG00000013383)	Cobl (ENSMOCG00000016899)	ENSMOCG00000001123	ENSMOCG00000001110	Slc34a2 (ENSMOCG00000000230) #13	Sel1l3 (ENSMOCG00000013009) #14	Smim20 (ENSMOCG00000017669) #15	ENSMOCG00000018816 #16	Cckar (ENSMOCG00000004693) #17	Tbc1d19 (ENSMOCG00000013897) #18	Stim2 (ENSMOCG00000017892) #20	ENSMOCG00000000264	ENSMOCG00000004908	ENSMOCG00000017801	Pcdh7 (ENSMOCG00000019554) #22	ENSMOCG00000016594	ENSMOCG00000017532	Arap2 (ENSMOCG00000008948) #24	Dthd1 (ENSMOCG00000019885) #25	Nwd2 (ENSMOCG00000002726) #26	ENSMOCG00000004195	0610040J01Rik (ENSMOCG00000010145) #27	Rell1 (ENSMOCG00000013662) #28	Pgm2 (ENSMOCG00000002142) #29	Tbc1d1 (ENSMOCG00000000703) #30	ENSMOCG00000020501	ENSMOCG00000005398	ENSMOCG00000002752 #31	Fam114a1 (ENSMOCG00000003632) #32	Tmem156 (ENSMOCG00000011114) #33
Northern American deer mouse	MODERN SPECIES	1	Tlr1 (ENSPEMG00000005760)	Klf3 (ENSPEMG00000026686) #31	ENSPEMG00000027929	Tbc1d1 (ENSPEMG00000001751) #30	Pgm2 (ENSPEMG00000000146) #29	Rell1 (ENSPEMG00000019052) #28	0610040J01Rik (ENSPEMG00000018765) #27	Nwd2 (ENSPEMG00000018695) #26	Dthd1 (ENSPEMG00000018338) #25	Arap2 (ENSPEMG00000017210) #24	ENSPEMG00000029590	ENSPEMG00000014650	ENSPEMG00000029628	ENSPEMG00000026158	ENSPEMG00000025746	Pcdh7 (ENSPEMG00000012079) #22	ENSPEMG00000008427	Stim2 (ENSPEMG00000013752) #20	Tbc1d19 (ENSPEMG00000010326) #18	Cckar (ENSPEMG00000025192) #17	Rbpj (ENSPEMG00000010386) #16	Smim20 (ENSPEMG00000030098) #15	Sel1l3 (ENSPEMG00000020373) #14	Slc34a2 (ENSPEMG00000007479) #13	Anapc4 (ENSPEMG00000014070)	ENSPEMG00000029080	Zcchc4 (ENSPEMG00000013522) #11	Pi4k2b (ENSPEMG00000007793) #10	Sepsecs (ENSPEMG00000006742) #9	Lgi2 (ENSPEMG00000011026) #8	Ccdc149 (ENSPEMG00000012229) #7
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Rat	MODERN SPECIES	5	Lgi2 (ENSRNOG00000066201) #8	Sepsecs (ENSRNOG00000049244) #9	Pi4k2b (ENSRNOG00000003924) #10	Zcchc4 (ENSRNOG00000029064) #11	Anapc4 (ENSRNOG00000004130)	Slc34a2 (ENSRNOG00000004626) #13	Sel1l3 (ENSRNOG00000004932) #14	AABR07015507.1 (ENSRNOG00000051190)	LOC100361259 (ENSRNOG00000055911)	Rbpj (ENSRNOG00000046327) #16	Cckar (ENSRNOG00000043124) #17	Tbc1d19 (ENSRNOG00000003003) #18	Stim2 (ENSRNOG00000002956) #20	ENSRNOG00000067114	Pcdh7 (ENSRNOG00000012367)	Pcdh7 (ENSRNOG00000063828) #22	ENSRNOG00000067336	AABR07015346.1 (ENSRNOG00000027791)	ENSRNOG00000065159	LOC108348204 (ENSRNOG00000063351)	ENSRNOG00000065472	Arap2 (ENSRNOG00000056826) #24	AABR07015180.1 (ENSRNOG00000026134)	Nwd2 (ENSRNOG00000051837) #26	LOC498368 (ENSRNOG00000002191) #27	Rell1 (ENSRNOG00000002192) #28	Pgm2 (ENSRNOG00000002185) #29	Tbc1d1 (ENSRNOG00000002180) #30	Klf3 (ENSRNOG00000002163) #31	Tlr10 (ENSRNOG00000067138)	Tlr1 (ENSRNOG00000038722)
Mus	ANCESTRAL SPECIES	14	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Shrew mouse	MODERN SPECIES	4	Dhx15 (MGP_PahariEiJ_G0016996)	Sod3 (MGP_PahariEiJ_G0016997)	Ccdc149 (MGP_PahariEiJ_G0016998) #7	Lgi2 (MGP_PahariEiJ_G0016999) #8	Sepsecs (MGP_PahariEiJ_G0017000) #9	Pi4k2b (MGP_PahariEiJ_G0017001) #10	Zcchc4 (MGP_PahariEiJ_G0017002) #11	Anapc4 (MGP_PahariEiJ_G0017003)	Slc34a2 (MGP_PahariEiJ_G0017004) #13	Sel1l3 (MGP_PahariEiJ_G0017005) #14	Smim20 (MGP_PahariEiJ_G0017006) #15	Rbpj (MGP_PahariEiJ_G0017007) #16	Cckar (MGP_PahariEiJ_G0017008) #17	Tbc1d19 (MGP_PahariEiJ_G0017009) #18	Stim2 (MGP_PahariEiJ_G0017010) #20	Pcdh7 (MGP_PahariEiJ_G0017011) #22	G6pd2 (MGP_PahariEiJ_G0017012)	Arap2 (MGP_PahariEiJ_G0017013) #24	Dthd1 (MGP_PahariEiJ_G0017014) #25	Nwd2 (MGP_PahariEiJ_G0017015) #26	0610040J01Rik (MGP_PahariEiJ_G0017016) #27	Rell1 (MGP_PahariEiJ_G0017017) #28	Pgm2 (MGP_PahariEiJ_G0017018) #29	Tbc1d1 (MGP_PahariEiJ_G0017019) #30	Klf3 (MGP_PahariEiJ_G0017020) #31	Tlr1 (MGP_PahariEiJ_G0017021)	Tlr6 (MGP_PahariEiJ_G0017022)	Fam114a1 (MGP_PahariEiJ_G0017023) #32	MGP_PahariEiJ_G0017024 #33	Klhl5 (MGP_PahariEiJ_G0017025) #34	Wdr19 (MGP_PahariEiJ_G0017026) #35
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Ryukyu mouse	MODERN SPECIES	14	Dhx15 (MGP_CAROLIEiJ_G0027214)	Sod3 (MGP_CAROLIEiJ_G0027215)	Ccdc149 (MGP_CAROLIEiJ_G0027216) #7	Lgi2 (MGP_CAROLIEiJ_G0027217) #8	Sepsecs (MGP_CAROLIEiJ_G0027218) #9	Pi4k2b (MGP_CAROLIEiJ_G0027219) #10	Zcchc4 (MGP_CAROLIEiJ_G0027220) #11	Anapc4 (MGP_CAROLIEiJ_G0027221)	Slc34a2 (MGP_CAROLIEiJ_G0027222) #13	Sel1l3 (MGP_CAROLIEiJ_G0027223) #14	Smim20 (MGP_CAROLIEiJ_G0027224) #15	MGP_CAROLIEiJ_G0027225 #16	Cckar (MGP_CAROLIEiJ_G0027226) #17	Tbc1d19 (MGP_CAROLIEiJ_G0027227) #18	Stim2 (MGP_CAROLIEiJ_G0027228) #20	Pcdh7 (MGP_CAROLIEiJ_G0027229) #22	G6pd2 (MGP_CAROLIEiJ_G0027230)	Arap2 (MGP_CAROLIEiJ_G0027231) #24	Dthd1 (MGP_CAROLIEiJ_G0027232) #25	Nwd2 (MGP_CAROLIEiJ_G0027233) #26	0610040J01Rik (MGP_CAROLIEiJ_G0027234) #27	Rell1 (MGP_CAROLIEiJ_G0027235) #28	Pgm2 (MGP_CAROLIEiJ_G0027236) #29	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238) #31	Tlr1 (MGP_CAROLIEiJ_G0027239)	Tlr6 (MGP_CAROLIEiJ_G0027240)	Fam114a1 (MGP_CAROLIEiJ_G0027241) #32	MGP_CAROLIEiJ_G0027242 #33	Klhl5 (MGP_CAROLIEiJ_G0027243) #34	Wdr19 (MGP_CAROLIEiJ_G0027244) #35
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Mouse	MODERN SPECIES	14	Dhx15 (ENSMUSG00000029169)	Sod3 (ENSMUSG00000072941)	Ccdc149 (ENSMUSG00000045790) #7	Lgi2 (ENSMUSG00000039252) #8	Sepsecs (ENSMUSG00000029173) #9	Pi4k2b (ENSMUSG00000029186) #10	Zcchc4 (ENSMUSG00000029179) #11	Anapc4 (ENSMUSG00000029176)	Slc34a2 (ENSMUSG00000029188) #13	Sel1l3 (ENSMUSG00000029189) #14	Smim20 (ENSMUSG00000061461) #15	Rbpj (ENSMUSG00000039191) #16	Cckar (ENSMUSG00000029193) #17	Tbc1d19 (ENSMUSG00000039178) #18	Stim2 (ENSMUSG00000039156) #20	Pcdh7 (ENSMUSG00000029108) #22	G6pd2 (ENSMUSG00000089992)	Arap2 (ENSMUSG00000037999) #24	Dthd1 (ENSMUSG00000090326) #25	Nwd2 (ENSMUSG00000090061) #26	0610040J01Rik (ENSMUSG00000060512) #27	Rell1 (ENSMUSG00000047881) #28	Pgm2 (ENSMUSG00000029171) #29	Tbc1d1 (ENSMUSG00000029174) #30	Klf3 (ENSMUSG00000029178) #31	Tlr1 (ENSMUSG00000044827)	Tlr6 (ENSMUSG00000051498)	Fam114a1 (ENSMUSG00000029185) #32	Tmem156 (ENSMUSG00000037913) #33	Klhl5 (ENSMUSG00000054920) #34	Wdr19 (ENSMUSG00000037890) #35
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
spretus	MODERN SPECIES	14	Dhx15 (MGP_SPRETEiJ_G0028209)	Sod3 (MGP_SPRETEiJ_G0028210)	Ccdc149 (MGP_SPRETEiJ_G0028211) #7	Lgi2 (MGP_SPRETEiJ_G0028212) #8	Sepsecs (MGP_SPRETEiJ_G0028213) #9	Pi4k2b (MGP_SPRETEiJ_G0028214) #10	Zcchc4 (MGP_SPRETEiJ_G0028215) #11	Anapc4 (MGP_SPRETEiJ_G0028216)	Slc34a2 (MGP_SPRETEiJ_G0028217) #13	Sel1l3 (MGP_SPRETEiJ_G0028218) #14	Smim20 (MGP_SPRETEiJ_G0028219) #15	MGP_SPRETEiJ_G0028220 #16	Cckar (MGP_SPRETEiJ_G0028221) #17	Tbc1d19 (MGP_SPRETEiJ_G0028222) #18	Stim2 (MGP_SPRETEiJ_G0028223) #20	Pcdh7 (MGP_SPRETEiJ_G0028224) #22	G6pd2 (MGP_SPRETEiJ_G0028225)	Arap2 (MGP_SPRETEiJ_G0028226) #24	Dthd1 (MGP_SPRETEiJ_G0028227) #25	Nwd2 (MGP_SPRETEiJ_G0028228) #26	0610040J01Rik (MGP_SPRETEiJ_G0028229) #27	Rell1 (MGP_SPRETEiJ_G0028230) #28	Pgm2 (MGP_SPRETEiJ_G0028231) #29	Tbc1d1 (MGP_SPRETEiJ_G0028232) #30	Klf3 (MGP_SPRETEiJ_G0028233) #31	Tlr6 (MGP_SPRETEiJ_G0028235)	Fam114a1 (MGP_SPRETEiJ_G0028236) #32	MGP_SPRETEiJ_G0028237 #33	Klhl5 (MGP_SPRETEiJ_G0028238) #34	Wdr19 (MGP_SPRETEiJ_G0028239) #35	Rfc1 (MGP_SPRETEiJ_G0028240) #36
Steppe mouse	MODERN SPECIES	3109													ENSMSIG00000025603	ENSMSIG00000025679	ENSMSIG00000025698	Pcdh7 (ENSMSIG00000025700) #22
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Guinea pig	MODERN SPECIES	50	SOD3 (ENSCPOG00000035072)	CCDC149 (ENSCPOG00000008895) #7	LGI2 (ENSCPOG00000024161) #8	SEPSECS (ENSCPOG00000035974) #9	PI4K2B (ENSCPOG00000015398) #10	ZCCHC4 (ENSCPOG00000011477) #11	ANAPC4 (ENSCPOG00000013122)	SLC34A2 (ENSCPOG00000024165) #13	SEL1L3 (ENSCPOG00000001037) #14	SMIM20 (ENSCPOG00000007684) #15	ENSCPOG00000040682	RBPJ (ENSCPOG00000007041) #16	CCKAR (ENSCPOG00000007046) #17	TBC1D19 (ENSCPOG00000003940) #18	STIM2 (ENSCPOG00000003408) #20	PCDH7 (ENSCPOG00000009659) #22	ARAP2 (ENSCPOG00000003037) #24	DTHD1 (ENSCPOG00000012919) #25
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00950000183137.b.a	ENSGT00940000155800	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Long-tailed chinchilla	MODERN SPECIES	150				SEPSECS (ENSCLAG00000001790) #9	PI4K2B (ENSCLAG00000001759) #10	ZCCHC4 (ENSCLAG00000003884) #11	ANAPC4 (ENSCLAG00000003544)	ENSCLAG00000002958	SLC34A2 (ENSCLAG00000002636) #13	SEL1L3 (ENSCLAG00000002362) #14	SMIM20 (ENSCLAG00000002089) #15	RBPJ (ENSCLAG00000002065) #16	CCKAR (ENSCLAG00000001729) #17	TBC1D19 (ENSCLAG00000001699) #18	STIM2 (ENSCLAG00000002849) #20	PCDH7 (ENSCLAG00000002605) #22	ARAP2 (ENSCLAG00000012467) #24	DTHD1 (ENSCLAG00000011952) #25	NWD2 (ENSCLAG00000010818) #26	C4orf19 (ENSCLAG00000010706) #27	RELL1 (ENSCLAG00000010401) #28	PGM2 (ENSCLAG00000010266) #29	TBC1D1 (ENSCLAG00000002236) #30	KLF3 (ENSCLAG00000004459) #31	TLR10 (ENSCLAG00000004336)	TLR1 (ENSCLAG00000017579)	TLR6 (ENSCLAG00000017630)	FAM114A1 (ENSCLAG00000003993) #32	TMEM156 (ENSCLAG00000003928) #33	KLHL5 (ENSCLAG00000002937) #34	WDR19 (ENSCLAG00000002775) #35
Degu	MODERN SPECIES	47	PI4K2B (ENSODEG00000008999) #10	ENSODEG00000007449 #11	ENSODEG00000006972 #12	ENSODEG00000019525	SLC34A2 (ENSODEG00000010839) #13	SEL1L3 (ENSODEG00000008196) #14	ENSODEG00000007321 #15	ENSODEG00000007277 #16	CCKAR (ENSODEG00000007359) #17	TBC1D19 (ENSODEG00000007019) #18	ENSODEG00000008773 #20	ENSODEG00000006518 #20	ENSODEG00000019413	ENSODEG00000006666	ENSODEG00000007600	PCDH7 (ENSODEG00000007387) #22	ENSODEG00000006993	ENSODEG00000019660	ARAP2 (ENSODEG00000006699) #24	DTHD1 (ENSODEG00000007001) #25
Naked mole-rat female	MODERN SPECIES	1	ENSHGLG00000039602	ANAPC4 (ENSHGLG00000004987)	SLC34A2 (ENSHGLG00000012163) #13	SEL1L3 (ENSHGLG00000011887) #14	ENSHGLG00000042802	ENSHGLG00000048407	RBPJ (ENSHGLG00000010901) #16	CCKAR (ENSHGLG00000041648) #17	TBC1D19 (ENSHGLG00000009465) #18	ENSHGLG00000009110 #20	ENSHGLG00000038509	ENSHGLG00000008412	ENSHGLG00000020704	ENSHGLG00000038050	ENSHGLG00000042856	ENSHGLG00000007929 #22	ENSHGLG00000032804	ENSHGLG00000008642	ARAP2 (ENSHGLG00000001750) #24	DTHD1 (ENSHGLG00000006344) #25	ENSHGLG00000000242	ENSHGLG00000037767	NWD2 (ENSHGLG00000000298) #26	ENSHGLG00000040844 #27	ENSHGLG00000040492 #27	ENSHGLG00000043452 #28	PGM2 (ENSHGLG00000001842) #29	ENSHGLG00000002323	ENSHGLG00000003063	ENSHGLG00000000606	ENSHGLG00000019811
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00990000210295	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005013482 #10	ZCCHC4 (ENSSVLG00005013382) #11	ANAPC4 (ENSSVLG00005013305)	SLC34A2 (ENSSVLG00005013163) #13	SEL1L3 (ENSSVLG00005012722) #14	SMIM20 (ENSSVLG00005012667) #15	RBPJ (ENSSVLG00005012303) #16	CCKAR (ENSSVLG00005012173) #17	TBC1D19 (ENSSVLG00005011905) #18	ENSSVLG00005011823	STIM2 (ENSSVLG00005011778) #20	ENSSVLG00005011737	ENSSVLG00005011695	ENSSVLG00005011631	ENSSVLG00005011572	PCDH7 (ENSSVLG00005011515) #22	ENSSVLG00005011423	ARAP2 (ENSSVLG00005010880) #24	DTHD1 (ENSSVLG00005010509) #25	ENSSVLG00005010441 #26	ENSSVLG00005010374 #26	C4orf19 (ENSSVLG00005010352) #27	RELL1 (ENSSVLG00005010318) #28	ENSSVLG00005010293	PGM2 (ENSSVLG00005010275) #29	TBC1D1 (ENSSVLG00005010172) #30	ENSSVLG00005010135	ENSSVLG00005010086 #31	ENSSVLG00005010070	TLR10 (ENSSVLG00005010051)	TLR1 (ENSSVLG00005010028)
Marmotini	ANCESTRAL SPECIES	26	ENSGT00940000155800.e	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Marmotini_b	ANCESTRAL SPECIES	48															ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00950000182841.b.a.a.b.b.p.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Arctic ground squirrel	MODERN SPECIES	2															ENSUPAG00010016796	PCDH7 (ENSUPAG00010016798) #22	ENSUPAG00010016821	ARAP2 (ENSUPAG00010016832) #24	DTHD1 (ENSUPAG00010016950) #25	NWD2 (ENSUPAG00010016964) #26	C4orf19 (ENSUPAG00010016983) #27	RELL1 (ENSUPAG00010016993) #28	PGM2 (ENSUPAG00010017012) #29	TBC1D1 (ENSUPAG00010017027) #30	KLF3 (ENSUPAG00010017209) #31	TLR10 (ENSUPAG00010017218)	TLR1 (ENSUPAG00010017233)	TLR6 (ENSUPAG00010017235)	FAM114A1 (ENSUPAG00010017240) #32	TMEM156 (ENSUPAG00010017254) #33	KLHL5 (ENSUPAG00010017266) #34
Squirrel	MODERN SPECIES	82																PCDH7 (ENSSTOG00000009192) #22	ENSSTOG00000029131	ENSSTOG00000028351	ARAP2 (ENSSTOG00000019405) #24	DTHD1 (ENSSTOG00000003003) #25	NWD2 (ENSSTOG00000019543) #26	C4orf19 (ENSSTOG00000003425) #27	RELL1 (ENSSTOG00000001374) #28	PGM2 (ENSSTOG00000008176) #29	ENSSTOG00000020687 #30	KLF3 (ENSSTOG00000010881) #31	TLR1 (ENSSTOG00000021581)	TLR6 (ENSSTOG00000025480)	FAM114A1 (ENSSTOG00000001171) #32	TMEM156 (ENSSTOG00000004246) #33	KLHL5 (ENSSTOG00000007013) #34
Alpin marmot	MODERN SPECIES	9	ENSMMMG00000017220	DHX15 (ENSMMMG00000017227)	CCDC149 (ENSMMMG00000017248) #7	LGI2 (ENSMMMG00000017262) #8	SEPSECS (ENSMMMG00000017270) #9	PI4K2B (ENSMMMG00000017289) #10	ZCCHC4 (ENSMMMG00000017301) #11	ANAPC4 (ENSMMMG00000017319)	SLC34A2 (ENSMMMG00000017344) #13	SEL1L3 (ENSMMMG00000017356) #14	SMIM20 (ENSMMMG00000017386) #15	RBPJ (ENSMMMG00000017407) #16	CCKAR (ENSMMMG00000017438) #17	STIM2 (ENSMMMG00000017470) #20	ENSMMMG00000017503	ENSMMMG00000017519 #22	ARAP2 (ENSMMMG00000017527) #24	DTHD1 (ENSMMMG00000017544) #25	NWD2 (ENSMMMG00000017559) #26	ENSMMMG00000017574	C4orf19 (ENSMMMG00000017577) #27	RELL1 (ENSMMMG00000017587) #28	PGM2 (ENSMMMG00000017606) #29	TBC1D1 (ENSMMMG00000017620) #30	ENSMMMG00000017716	KLF3 (ENSMMMG00000017721) #31	TLR10 (ENSMMMG00000017725)	TLR1 (ENSMMMG00000017739)	TLR6 (ENSMMMG00000017761)	FAM114A1 (ENSMMMG00000017765) #32	TMEM156 (ENSMMMG00000017773) #33