Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37
Sarcopterygii	ANCESTRAL SPECIES	2	ENSGT00950000183137.b.a	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000170408	ENSGT00940000153648.b #26	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00940000155358 #34
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37
Amniota	ANCESTRAL SPECIES	2	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Mammalia	ANCESTRAL SPECIES	1	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Theria	ANCESTRAL SPECIES	6	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT01040000242873	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Glires	ANCESTRAL SPECIES	8	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Kangaroo rat	MODERN SPECIES	327	Ccdc149 (ENSDORG00000005628) #7	Lgi2 (ENSDORG00000005632) #8	Sepsecs (ENSDORG00000012655) #9	Pi4k2b (ENSDORG00000000491) #10	ENSDORG00000012901 #11	ENSDORG00000025086 #12	Slc34a2 (ENSDORG00000016105) #13	Sel1l3 (ENSDORG00000011773) #14	Smim20 (ENSDORG00000028531) #15	Rbpj (ENSDORG00000006352) #16	Cckar (ENSDORG00000006353) #17	Tbc1d19 (ENSDORG00000013790) #18	Stim2 (ENSDORG00000016610) #19	ENSDORG00000028755 #20	ENSDORG00000008260 #21	Pcdh7 (ENSDORG00000029117) #22	ENSDORG00000028110 #23	Arap2 (ENSDORG00000008160) #24	Dthd1 (ENSDORG00000001578) #25	Nwd2 (ENSDORG00000023758) #26	0610040J01Rik (ENSDORG00000011992) #27	Rell1 (ENSDORG00000008354) #28	Pgm2 (ENSDORG00000027647) #29	Tbc1d1 (ENSDORG00000010269) #30	Klf3 (ENSDORG00000023213) #31	Fam114a1 (ENSDORG00000010517) #32	ENSDORG00000010522 #33	Klhl5 (ENSDORG00000010524) #34	Wdr19 (ENSDORG00000010525) #35	Rfc1 (ENSDORG00000010527) #36	Klb (ENSDORG00000005905) #37
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Lesser Egyptian jerboa	MODERN SPECIES	58	Lgi2 (ENSJJAG00000021018) #8	Sepsecs (ENSJJAG00000001251) #9	Pi4k2b (ENSJJAG00000021578) #10	Zcchc4 (ENSJJAG00000016627) #11	ENSJJAG00000023054	Slc34a2 (ENSJJAG00000023515) #13	Sel1l3 (ENSJJAG00000018980) #14	Smim20 (ENSJJAG00000020734) #15	Rbpj (ENSJJAG00000024408) #16	Cckar (ENSJJAG00000009819) #17	Tbc1d19 (ENSJJAG00000015623) #18	Stim2 (ENSJJAG00000014478) #20	ENSJJAG00000011152	ENSJJAG00000011305	ENSJJAG00000024218	Pcdh7 (ENSJJAG00000021210) #22	Arap2 (ENSJJAG00000009614) #24	Dthd1 (ENSJJAG00000013536) #25	Nwd2 (ENSJJAG00000011338) #26	Rell1 (ENSJJAG00000015408) #28
Muroidea	ANCESTRAL SPECIES	17	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	568																Pcdh7 (ENSNGAG00000011901) #22
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Chinese hamster chok1gshd	MODERN SPECIES	44	Zcchc4 (ENSCGRG00001014205) #11	ENSCGRG00001016709	Anapc4 (ENSCGRG00001021562)	Slc34a2 (ENSCGRG00001019379) #13	Sel1l3 (ENSCGRG00001023792) #14	Smim20 (ENSCGRG00001010352) #15	ENSCGRG00001010832	Rbpj (ENSCGRG00001016640) #16	Cckar (ENSCGRG00001015331) #17	Tbc1d19 (ENSCGRG00001021066) #18	ENSCGRG00001004312	Stim2 (ENSCGRG00001012517) #20	ENSCGRG00001002941	ENSCGRG00001005160	ENSCGRG00001012415	Pcdh7 (ENSCGRG00001017637) #22	ENSCGRG00001018983	ENSCGRG00001009672	Arap2 (ENSCGRG00001019683) #24	Dthd1 (ENSCGRG00001007560) #25	ENSCGRG00001015981	ENSCGRG00001005701	Nwd2 (ENSCGRG00001014796) #26	0610040J01Rik (ENSCGRG00001016782) #27	ENSCGRG00001017215 #28	Pgm2 (ENSCGRG00001019866) #29	Tbc1d1 (ENSCGRG00001007939) #30	Klf3 (ENSCGRG00001011019) #31	ENSCGRG00001011588	Tlr1 (ENSCGRG00001012288)	Tlr6 (ENSCGRG00001012094)
Golden Hamster	MODERN SPECIES	663														ENSMAUG00000015885	ENSMAUG00000016216	Pcdh7 (ENSMAUG00000010506) #22	Arap2 (ENSMAUG00000008087) #24	Dthd1 (ENSMAUG00000005079) #25	Nwd2 (ENSMAUG00000004008) #26	0610040J01Rik (ENSMAUG00000001342) #27	Rell1 (ENSMAUG00000015257) #28	Pgm2 (ENSMAUG00000009577) #29	Tbc1d1 (ENSMAUG00000010694) #30	Klf3 (ENSMAUG00000000706) #31	Tlr1 (ENSMAUG00000000142)	Tlr6 (ENSMAUG00000007865)	Fam114a1 (ENSMAUG00000001743) #32	Tmem156 (ENSMAUG00000000185) #33	Klhl5 (ENSMAUG00000019052) #34	ENSMAUG00000008307	ENSMAUG00000004466 #35
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37
Prairie vole	MODERN SPECIES	349	Ddc (ENSMOCG00000014117)	Grb10 (ENSMOCG00000013383)	Cobl (ENSMOCG00000016899)	ENSMOCG00000001123	ENSMOCG00000001110	Slc34a2 (ENSMOCG00000000230) #13	Sel1l3 (ENSMOCG00000013009) #14	Smim20 (ENSMOCG00000017669) #15	ENSMOCG00000018816 #16	Cckar (ENSMOCG00000004693) #17	Tbc1d19 (ENSMOCG00000013897) #18	Stim2 (ENSMOCG00000017892) #20	ENSMOCG00000000264	ENSMOCG00000004908	ENSMOCG00000017801	Pcdh7 (ENSMOCG00000019554) #22	ENSMOCG00000016594	ENSMOCG00000017532	Arap2 (ENSMOCG00000008948) #24	Dthd1 (ENSMOCG00000019885) #25	Nwd2 (ENSMOCG00000002726) #26	ENSMOCG00000004195	0610040J01Rik (ENSMOCG00000010145) #27	Rell1 (ENSMOCG00000013662) #28	Pgm2 (ENSMOCG00000002142) #29	Tbc1d1 (ENSMOCG00000000703) #30	ENSMOCG00000020501	ENSMOCG00000005398	ENSMOCG00000002752 #31	Fam114a1 (ENSMOCG00000003632) #32	Tmem156 (ENSMOCG00000011114) #33
Northern American deer mouse	MODERN SPECIES	1	Tlr1 (ENSPEMG00000005760)	Klf3 (ENSPEMG00000026686) #31	ENSPEMG00000027929	Tbc1d1 (ENSPEMG00000001751) #30	Pgm2 (ENSPEMG00000000146) #29	Rell1 (ENSPEMG00000019052) #28	0610040J01Rik (ENSPEMG00000018765) #27	Nwd2 (ENSPEMG00000018695) #26	Dthd1 (ENSPEMG00000018338) #25	Arap2 (ENSPEMG00000017210) #24	ENSPEMG00000029590	ENSPEMG00000014650	ENSPEMG00000029628	ENSPEMG00000026158	ENSPEMG00000025746	Pcdh7 (ENSPEMG00000012079) #22	ENSPEMG00000008427	Stim2 (ENSPEMG00000013752) #20	Tbc1d19 (ENSPEMG00000010326) #18	Cckar (ENSPEMG00000025192) #17	Rbpj (ENSPEMG00000010386) #16	Smim20 (ENSPEMG00000030098) #15	Sel1l3 (ENSPEMG00000020373) #14	Slc34a2 (ENSPEMG00000007479) #13	Anapc4 (ENSPEMG00000014070)	ENSPEMG00000029080	Zcchc4 (ENSPEMG00000013522) #11	Pi4k2b (ENSPEMG00000007793) #10	Sepsecs (ENSPEMG00000006742) #9	Lgi2 (ENSPEMG00000011026) #8	Ccdc149 (ENSPEMG00000012229) #7
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Rat	MODERN SPECIES	5	Lgi2 (ENSRNOG00000066201) #8	Sepsecs (ENSRNOG00000049244) #9	Pi4k2b (ENSRNOG00000003924) #10	Zcchc4 (ENSRNOG00000029064) #11	Anapc4 (ENSRNOG00000004130)	Slc34a2 (ENSRNOG00000004626) #13	Sel1l3 (ENSRNOG00000004932) #14	AABR07015507.1 (ENSRNOG00000051190)	LOC100361259 (ENSRNOG00000055911)	Rbpj (ENSRNOG00000046327) #16	Cckar (ENSRNOG00000043124) #17	Tbc1d19 (ENSRNOG00000003003) #18	Stim2 (ENSRNOG00000002956) #20	ENSRNOG00000067114	Pcdh7 (ENSRNOG00000012367)	Pcdh7 (ENSRNOG00000063828) #22	ENSRNOG00000067336	AABR07015346.1 (ENSRNOG00000027791)	ENSRNOG00000065159	LOC108348204 (ENSRNOG00000063351)	ENSRNOG00000065472	Arap2 (ENSRNOG00000056826) #24	AABR07015180.1 (ENSRNOG00000026134)	Nwd2 (ENSRNOG00000051837) #26	LOC498368 (ENSRNOG00000002191) #27	Rell1 (ENSRNOG00000002192) #28	Pgm2 (ENSRNOG00000002185) #29	Tbc1d1 (ENSRNOG00000002180) #30	Klf3 (ENSRNOG00000002163) #31	Tlr10 (ENSRNOG00000067138)	Tlr1 (ENSRNOG00000038722)
Mus	ANCESTRAL SPECIES	14	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Shrew mouse	MODERN SPECIES	4	Dhx15 (MGP_PahariEiJ_G0016996)	Sod3 (MGP_PahariEiJ_G0016997)	Ccdc149 (MGP_PahariEiJ_G0016998) #7	Lgi2 (MGP_PahariEiJ_G0016999) #8	Sepsecs (MGP_PahariEiJ_G0017000) #9	Pi4k2b (MGP_PahariEiJ_G0017001) #10	Zcchc4 (MGP_PahariEiJ_G0017002) #11	Anapc4 (MGP_PahariEiJ_G0017003)	Slc34a2 (MGP_PahariEiJ_G0017004) #13	Sel1l3 (MGP_PahariEiJ_G0017005) #14	Smim20 (MGP_PahariEiJ_G0017006) #15	Rbpj (MGP_PahariEiJ_G0017007) #16	Cckar (MGP_PahariEiJ_G0017008) #17	Tbc1d19 (MGP_PahariEiJ_G0017009) #18	Stim2 (MGP_PahariEiJ_G0017010) #20	Pcdh7 (MGP_PahariEiJ_G0017011) #22	G6pd2 (MGP_PahariEiJ_G0017012)	Arap2 (MGP_PahariEiJ_G0017013) #24	Dthd1 (MGP_PahariEiJ_G0017014) #25	Nwd2 (MGP_PahariEiJ_G0017015) #26	0610040J01Rik (MGP_PahariEiJ_G0017016) #27	Rell1 (MGP_PahariEiJ_G0017017) #28	Pgm2 (MGP_PahariEiJ_G0017018) #29	Tbc1d1 (MGP_PahariEiJ_G0017019) #30	Klf3 (MGP_PahariEiJ_G0017020) #31	Tlr1 (MGP_PahariEiJ_G0017021)	Tlr6 (MGP_PahariEiJ_G0017022)	Fam114a1 (MGP_PahariEiJ_G0017023) #32	MGP_PahariEiJ_G0017024 #33	Klhl5 (MGP_PahariEiJ_G0017025) #34	Wdr19 (MGP_PahariEiJ_G0017026) #35
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Ryukyu mouse	MODERN SPECIES	14	Dhx15 (MGP_CAROLIEiJ_G0027214)	Sod3 (MGP_CAROLIEiJ_G0027215)	Ccdc149 (MGP_CAROLIEiJ_G0027216) #7	Lgi2 (MGP_CAROLIEiJ_G0027217) #8	Sepsecs (MGP_CAROLIEiJ_G0027218) #9	Pi4k2b (MGP_CAROLIEiJ_G0027219) #10	Zcchc4 (MGP_CAROLIEiJ_G0027220) #11	Anapc4 (MGP_CAROLIEiJ_G0027221)	Slc34a2 (MGP_CAROLIEiJ_G0027222) #13	Sel1l3 (MGP_CAROLIEiJ_G0027223) #14	Smim20 (MGP_CAROLIEiJ_G0027224) #15	MGP_CAROLIEiJ_G0027225 #16	Cckar (MGP_CAROLIEiJ_G0027226) #17	Tbc1d19 (MGP_CAROLIEiJ_G0027227) #18	Stim2 (MGP_CAROLIEiJ_G0027228) #20	Pcdh7 (MGP_CAROLIEiJ_G0027229) #22	G6pd2 (MGP_CAROLIEiJ_G0027230)	Arap2 (MGP_CAROLIEiJ_G0027231) #24	Dthd1 (MGP_CAROLIEiJ_G0027232) #25	Nwd2 (MGP_CAROLIEiJ_G0027233) #26	0610040J01Rik (MGP_CAROLIEiJ_G0027234) #27	Rell1 (MGP_CAROLIEiJ_G0027235) #28	Pgm2 (MGP_CAROLIEiJ_G0027236) #29	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238) #31	Tlr1 (MGP_CAROLIEiJ_G0027239)	Tlr6 (MGP_CAROLIEiJ_G0027240)	Fam114a1 (MGP_CAROLIEiJ_G0027241) #32	MGP_CAROLIEiJ_G0027242 #33	Klhl5 (MGP_CAROLIEiJ_G0027243) #34	Wdr19 (MGP_CAROLIEiJ_G0027244) #35
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Mouse	MODERN SPECIES	14	Dhx15 (ENSMUSG00000029169)	Sod3 (ENSMUSG00000072941)	Ccdc149 (ENSMUSG00000045790) #7	Lgi2 (ENSMUSG00000039252) #8	Sepsecs (ENSMUSG00000029173) #9	Pi4k2b (ENSMUSG00000029186) #10	Zcchc4 (ENSMUSG00000029179) #11	Anapc4 (ENSMUSG00000029176)	Slc34a2 (ENSMUSG00000029188) #13	Sel1l3 (ENSMUSG00000029189) #14	Smim20 (ENSMUSG00000061461) #15	Rbpj (ENSMUSG00000039191) #16	Cckar (ENSMUSG00000029193) #17	Tbc1d19 (ENSMUSG00000039178) #18	Stim2 (ENSMUSG00000039156) #20	Pcdh7 (ENSMUSG00000029108) #22	G6pd2 (ENSMUSG00000089992)	Arap2 (ENSMUSG00000037999) #24	Dthd1 (ENSMUSG00000090326) #25	Nwd2 (ENSMUSG00000090061) #26	0610040J01Rik (ENSMUSG00000060512) #27	Rell1 (ENSMUSG00000047881) #28	Pgm2 (ENSMUSG00000029171) #29	Tbc1d1 (ENSMUSG00000029174) #30	Klf3 (ENSMUSG00000029178) #31	Tlr1 (ENSMUSG00000044827)	Tlr6 (ENSMUSG00000051498)	Fam114a1 (ENSMUSG00000029185) #32	Tmem156 (ENSMUSG00000037913) #33	Klhl5 (ENSMUSG00000054920) #34	Wdr19 (ENSMUSG00000037890) #35
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00530000063435.a.p	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
spretus	MODERN SPECIES	14	Dhx15 (MGP_SPRETEiJ_G0028209)	Sod3 (MGP_SPRETEiJ_G0028210)	Ccdc149 (MGP_SPRETEiJ_G0028211) #7	Lgi2 (MGP_SPRETEiJ_G0028212) #8	Sepsecs (MGP_SPRETEiJ_G0028213) #9	Pi4k2b (MGP_SPRETEiJ_G0028214) #10	Zcchc4 (MGP_SPRETEiJ_G0028215) #11	Anapc4 (MGP_SPRETEiJ_G0028216)	Slc34a2 (MGP_SPRETEiJ_G0028217) #13	Sel1l3 (MGP_SPRETEiJ_G0028218) #14	Smim20 (MGP_SPRETEiJ_G0028219) #15	MGP_SPRETEiJ_G0028220 #16	Cckar (MGP_SPRETEiJ_G0028221) #17	Tbc1d19 (MGP_SPRETEiJ_G0028222) #18	Stim2 (MGP_SPRETEiJ_G0028223) #20	Pcdh7 (MGP_SPRETEiJ_G0028224) #22	G6pd2 (MGP_SPRETEiJ_G0028225)	Arap2 (MGP_SPRETEiJ_G0028226) #24	Dthd1 (MGP_SPRETEiJ_G0028227) #25	Nwd2 (MGP_SPRETEiJ_G0028228) #26	0610040J01Rik (MGP_SPRETEiJ_G0028229) #27	Rell1 (MGP_SPRETEiJ_G0028230) #28	Pgm2 (MGP_SPRETEiJ_G0028231) #29	Tbc1d1 (MGP_SPRETEiJ_G0028232) #30	Klf3 (MGP_SPRETEiJ_G0028233) #31	Tlr6 (MGP_SPRETEiJ_G0028235)	Fam114a1 (MGP_SPRETEiJ_G0028236) #32	MGP_SPRETEiJ_G0028237 #33	Klhl5 (MGP_SPRETEiJ_G0028238) #34	Wdr19 (MGP_SPRETEiJ_G0028239) #35	Rfc1 (MGP_SPRETEiJ_G0028240) #36
Steppe mouse	MODERN SPECIES	3109													ENSMSIG00000025603	ENSMSIG00000025679	ENSMSIG00000025698	Pcdh7 (ENSMSIG00000025700) #22
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Guinea pig	MODERN SPECIES	50	SOD3 (ENSCPOG00000035072)	CCDC149 (ENSCPOG00000008895) #7	LGI2 (ENSCPOG00000024161) #8	SEPSECS (ENSCPOG00000035974) #9	PI4K2B (ENSCPOG00000015398) #10	ZCCHC4 (ENSCPOG00000011477) #11	ANAPC4 (ENSCPOG00000013122)	SLC34A2 (ENSCPOG00000024165) #13	SEL1L3 (ENSCPOG00000001037) #14	SMIM20 (ENSCPOG00000007684) #15	ENSCPOG00000040682	RBPJ (ENSCPOG00000007041) #16	CCKAR (ENSCPOG00000007046) #17	TBC1D19 (ENSCPOG00000003940) #18	STIM2 (ENSCPOG00000003408) #20	PCDH7 (ENSCPOG00000009659) #22	ARAP2 (ENSCPOG00000003037) #24	DTHD1 (ENSCPOG00000012919) #25
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00950000183137.b.a	ENSGT00940000155800	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Long-tailed chinchilla	MODERN SPECIES	150				SEPSECS (ENSCLAG00000001790) #9	PI4K2B (ENSCLAG00000001759) #10	ZCCHC4 (ENSCLAG00000003884) #11	ANAPC4 (ENSCLAG00000003544)	ENSCLAG00000002958	SLC34A2 (ENSCLAG00000002636) #13	SEL1L3 (ENSCLAG00000002362) #14	SMIM20 (ENSCLAG00000002089) #15	RBPJ (ENSCLAG00000002065) #16	CCKAR (ENSCLAG00000001729) #17	TBC1D19 (ENSCLAG00000001699) #18	STIM2 (ENSCLAG00000002849) #20	PCDH7 (ENSCLAG00000002605) #22	ARAP2 (ENSCLAG00000012467) #24	DTHD1 (ENSCLAG00000011952) #25	NWD2 (ENSCLAG00000010818) #26	C4orf19 (ENSCLAG00000010706) #27	RELL1 (ENSCLAG00000010401) #28	PGM2 (ENSCLAG00000010266) #29	TBC1D1 (ENSCLAG00000002236) #30	KLF3 (ENSCLAG00000004459) #31	TLR10 (ENSCLAG00000004336)	TLR1 (ENSCLAG00000017579)	TLR6 (ENSCLAG00000017630)	FAM114A1 (ENSCLAG00000003993) #32	TMEM156 (ENSCLAG00000003928) #33	KLHL5 (ENSCLAG00000002937) #34	WDR19 (ENSCLAG00000002775) #35
Degu	MODERN SPECIES	47	PI4K2B (ENSODEG00000008999) #10	ENSODEG00000007449 #11	ENSODEG00000006972 #12	ENSODEG00000019525	SLC34A2 (ENSODEG00000010839) #13	SEL1L3 (ENSODEG00000008196) #14	ENSODEG00000007321 #15	ENSODEG00000007277 #16	CCKAR (ENSODEG00000007359) #17	TBC1D19 (ENSODEG00000007019) #18	ENSODEG00000008773 #20	ENSODEG00000006518 #20	ENSODEG00000019413	ENSODEG00000006666	ENSODEG00000007600	PCDH7 (ENSODEG00000007387) #22	ENSODEG00000006993	ENSODEG00000019660	ARAP2 (ENSODEG00000006699) #24	DTHD1 (ENSODEG00000007001) #25
Naked mole-rat female	MODERN SPECIES	1	ENSHGLG00000039602	ANAPC4 (ENSHGLG00000004987)	SLC34A2 (ENSHGLG00000012163) #13	SEL1L3 (ENSHGLG00000011887) #14	ENSHGLG00000042802	ENSHGLG00000048407	RBPJ (ENSHGLG00000010901) #16	CCKAR (ENSHGLG00000041648) #17	TBC1D19 (ENSHGLG00000009465) #18	ENSHGLG00000009110 #20	ENSHGLG00000038509	ENSHGLG00000008412	ENSHGLG00000020704	ENSHGLG00000038050	ENSHGLG00000042856	ENSHGLG00000007929 #22	ENSHGLG00000032804	ENSHGLG00000008642	ARAP2 (ENSHGLG00000001750) #24	DTHD1 (ENSHGLG00000006344) #25	ENSHGLG00000000242	ENSHGLG00000037767	NWD2 (ENSHGLG00000000298) #26	ENSHGLG00000040844 #27	ENSHGLG00000040492 #27	ENSHGLG00000043452 #28	PGM2 (ENSHGLG00000001842) #29	ENSHGLG00000002323	ENSHGLG00000003063	ENSHGLG00000000606	ENSHGLG00000019811
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00990000210295	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005013482 #10	ZCCHC4 (ENSSVLG00005013382) #11	ANAPC4 (ENSSVLG00005013305)	SLC34A2 (ENSSVLG00005013163) #13	SEL1L3 (ENSSVLG00005012722) #14	SMIM20 (ENSSVLG00005012667) #15	RBPJ (ENSSVLG00005012303) #16	CCKAR (ENSSVLG00005012173) #17	TBC1D19 (ENSSVLG00005011905) #18	ENSSVLG00005011823	STIM2 (ENSSVLG00005011778) #20	ENSSVLG00005011737	ENSSVLG00005011695	ENSSVLG00005011631	ENSSVLG00005011572	PCDH7 (ENSSVLG00005011515) #22	ENSSVLG00005011423	ARAP2 (ENSSVLG00005010880) #24	DTHD1 (ENSSVLG00005010509) #25	ENSSVLG00005010441 #26	ENSSVLG00005010374 #26	C4orf19 (ENSSVLG00005010352) #27	RELL1 (ENSSVLG00005010318) #28	ENSSVLG00005010293	PGM2 (ENSSVLG00005010275) #29	TBC1D1 (ENSSVLG00005010172) #30	ENSSVLG00005010135	ENSSVLG00005010086 #31	ENSSVLG00005010070	TLR10 (ENSSVLG00005010051)	TLR1 (ENSSVLG00005010028)
Marmotini	ANCESTRAL SPECIES	26	ENSGT00940000155800.e	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Marmotini_b	ANCESTRAL SPECIES	48															ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00950000182841.b.a.a.b.b.p.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Arctic ground squirrel	MODERN SPECIES	2															ENSUPAG00010016796	PCDH7 (ENSUPAG00010016798) #22	ENSUPAG00010016821	ARAP2 (ENSUPAG00010016832) #24	DTHD1 (ENSUPAG00010016950) #25	NWD2 (ENSUPAG00010016964) #26	C4orf19 (ENSUPAG00010016983) #27	RELL1 (ENSUPAG00010016993) #28	PGM2 (ENSUPAG00010017012) #29	TBC1D1 (ENSUPAG00010017027) #30	KLF3 (ENSUPAG00010017209) #31	TLR10 (ENSUPAG00010017218)	TLR1 (ENSUPAG00010017233)	TLR6 (ENSUPAG00010017235)	FAM114A1 (ENSUPAG00010017240) #32	TMEM156 (ENSUPAG00010017254) #33	KLHL5 (ENSUPAG00010017266) #34
Squirrel	MODERN SPECIES	82																PCDH7 (ENSSTOG00000009192) #22	ENSSTOG00000029131	ENSSTOG00000028351	ARAP2 (ENSSTOG00000019405) #24	DTHD1 (ENSSTOG00000003003) #25	NWD2 (ENSSTOG00000019543) #26	C4orf19 (ENSSTOG00000003425) #27	RELL1 (ENSSTOG00000001374) #28	PGM2 (ENSSTOG00000008176) #29	ENSSTOG00000020687 #30	KLF3 (ENSSTOG00000010881) #31	TLR1 (ENSSTOG00000021581)	TLR6 (ENSSTOG00000025480)	FAM114A1 (ENSSTOG00000001171) #32	TMEM156 (ENSSTOG00000004246) #33	KLHL5 (ENSSTOG00000007013) #34
Alpin marmot	MODERN SPECIES	9	ENSMMMG00000017220	DHX15 (ENSMMMG00000017227)	CCDC149 (ENSMMMG00000017248) #7	LGI2 (ENSMMMG00000017262) #8	SEPSECS (ENSMMMG00000017270) #9	PI4K2B (ENSMMMG00000017289) #10	ZCCHC4 (ENSMMMG00000017301) #11	ANAPC4 (ENSMMMG00000017319)	SLC34A2 (ENSMMMG00000017344) #13	SEL1L3 (ENSMMMG00000017356) #14	SMIM20 (ENSMMMG00000017386) #15	RBPJ (ENSMMMG00000017407) #16	CCKAR (ENSMMMG00000017438) #17	STIM2 (ENSMMMG00000017470) #20	ENSMMMG00000017503	ENSMMMG00000017519 #22	ARAP2 (ENSMMMG00000017527) #24	DTHD1 (ENSMMMG00000017544) #25	NWD2 (ENSMMMG00000017559) #26	ENSMMMG00000017574	C4orf19 (ENSMMMG00000017577) #27	RELL1 (ENSMMMG00000017587) #28	PGM2 (ENSMMMG00000017606) #29	TBC1D1 (ENSMMMG00000017620) #30	ENSMMMG00000017716	KLF3 (ENSMMMG00000017721) #31	TLR10 (ENSMMMG00000017725)	TLR1 (ENSMMMG00000017739)	TLR6 (ENSMMMG00000017761)	FAM114A1 (ENSMMMG00000017765) #32	TMEM156 (ENSMMMG00000017773) #33
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Rabbit	MODERN SPECIES	11	PI4K2B (ENSOCUG00000015972) #10	ZCCHC4 (ENSOCUG00000015990) #11	ANAPC4 (ENSOCUG00000016004)	SLC34A2 (ENSOCUG00000002944) #13	SEL1L3 (ENSOCUG00000017195) #14	SMIM20 (ENSOCUG00000034394) #15	RBPJ (ENSOCUG00000013449) #16	CCKAR (ENSOCUG00000013457) #17	TBC1D19 (ENSOCUG00000013465) #18	STIM2 (ENSOCUG00000014185) #20	ENSOCUG00000038061	ENSOCUG00000026856	ENSOCUG00000039608	ENSOCUG00000030289	ENSOCUG00000035672	PCDH7 (ENSOCUG00000000290) #22	ENSOCUG00000023563	ENSOCUG00000010124	ENSOCUG00000036228	ARAP2 (ENSOCUG00000015669) #24	DTHD1 (ENSOCUG00000001098) #25	NWD2 (ENSOCUG00000012238) #26	C4orf19 (ENSOCUG00000003831) #27	RELL1 (ENSOCUG00000003419) #28	ENSOCUG00000036928	PGM2 (ENSOCUG00000013740) #29	TBC1D1 (ENSOCUG00000012442) #30	ENSOCUG00000022888	KLF3 (ENSOCUG00000003698) #31	TLR10 (ENSOCUG00000003701)	TLR1 (ENSOCUG00000001824)
Pika	MODERN SPECIES	3264																PCDH7 (ENSOPRG00000009307) #22
Primates	ANCESTRAL SPECIES	10	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Tarsier	MODERN SPECIES	4632																PCDH7 (ENSTSYG00000034711) #22	ENSTSYG00000032637	ENSTSYG00000032398	OXSM (ENSTSYG00000014133)	NGLY1 (ENSTSYG00000014131)	TOP2B (ENSTSYG00000008678)	RARB (ENSTSYG00000031926)
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247.e #29	ENSGT00390000009693.p.b	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Mas night monkey	MODERN SPECIES	1275																PCDH7 (ENSANAG00000029987) #22	ENSANAG00000027397
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247.e #29	ENSGT00390000009693.p.b	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247.e #29	ENSGT00390000009693.p.b	ENSGT00940000157949 #30	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Capuchin	MODERN SPECIES	47																PCDH7 (ENSCCAG00000023600) #22	ENSCCAG00000020076	ENSCCAG00000031441	ENSCCAG00000032278	ARAP2 (ENSCCAG00000029735) #24	DTHD1 (ENSCCAG00000031299) #25	NWD2 (ENSCCAG00000036260) #26	ENSCCAG00000013077	C4orf19 (ENSCCAG00000025207) #27	RELL1 (ENSCCAG00000033964) #28	ENSCCAG00000035751 #29	ENSCCAG00000021574	TBC1D1 (ENSCCAG00000029938) #30	KLF3 (ENSCCAG00000035557) #31	ENSCCAG00000035205	FAM114A1 (ENSCCAG00000001555) #32
Bolivian squirrel monkey	MODERN SPECIES	65	ENSSBOG00000030054	SOD3 (ENSSBOG00000003134)	CCDC149 (ENSSBOG00000034478) #7	LGI2 (ENSSBOG00000033943) #8	SEPSECS (ENSSBOG00000023218) #9	PI4K2B (ENSSBOG00000030108) #10	ZCCHC4 (ENSSBOG00000020855) #11	ANAPC4 (ENSSBOG00000025712)	SLC34A2 (ENSSBOG00000023680) #13	SEL1L3 (ENSSBOG00000031484) #14	ENSSBOG00000022950 #15	RBPJ (ENSSBOG00000024531) #16	CCKAR (ENSSBOG00000028673) #17	TBC1D19 (ENSSBOG00000030316) #18	STIM2 (ENSSBOG00000030023) #20	PCDH7 (ENSSBOG00000011267) #22	ENSSBOG00000030688	ARAP2 (ENSSBOG00000023662) #24	DTHD1 (ENSSBOG00000034010) #25	NWD2 (ENSSBOG00000028289) #26	C4orf19 (ENSSBOG00000034925) #27	RELL1 (ENSSBOG00000022983) #28	PGM2 (ENSSBOG00000025985) #29	TBC1D1 (ENSSBOG00000035438) #30	ENSSBOG00000033413	KLF3 (ENSSBOG00000005401) #31	FAM114A1 (ENSSBOG00000025532) #32	TMEM156 (ENSSBOG00000019408) #33	KLHL5 (ENSSBOG00000025830) #34	WDR19 (ENSSBOG00000032016) #35	RFC1 (ENSSBOG00000015554) #36
Marmoset	MODERN SPECIES	15	CCDC149 (ENSCJAG00000013127) #7	LGI2 (ENSCJAG00000042679) #8	SEPSECS (ENSCJAG00000013178) #9	ANAPC4 (ENSCJAG00000013271)	ENSCJAG00000084062	SLC34A2 (ENSCJAG00000013366) #13	SEL1L3 (ENSCJAG00000021061) #14	SMIM20 (ENSCJAG00000081638) #15	ENSCJAG00000063163	ENSCJAG00000086596	RBPJ (ENSCJAG00000021033) #16	CCKAR (ENSCJAG00000083281) #17	TBC1D19 (ENSCJAG00000021004) #18	ENSCJAG00000067085	STIM2 (ENSCJAG00000020997) #20	PCDH7 (ENSCJAG00000020994) #22	ENSCJAG00000085279	ENSCJAG00000075802	ENSCJAG00000082827	ENSCJAG00000070181	ENSCJAG00000078636	ARAP2 (ENSCJAG00000020975) #24	DTHD1 (ENSCJAG00000020974) #25	ENSCJAG00000081599	NWD2 (ENSCJAG00000020972) #26	C4orf19 (ENSCJAG00000020970) #27	RELL1 (ENSCJAG00000020965) #28	ENSCJAG00000077848	PGM2 (ENSCJAG00000020941) #29	TBC1D1 (ENSCJAG00000020921) #30	KLF3 (ENSCJAG00000038931) #31
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00390000009693.m.b	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00770000121815	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Gibbon	MODERN SPECIES	12	SOD3 (ENSNLEG00000032570)	CCDC149 (ENSNLEG00000016779) #7	LGI2 (ENSNLEG00000016796) #8	SEPSECS (ENSNLEG00000016800) #9	PI4K2B (ENSNLEG00000016814) #10	ZCCHC4 (ENSNLEG00000016824) #11	ANAPC4 (ENSNLEG00000016831)	SLC34A2 (ENSNLEG00000016860) #13	SEL1L3 (ENSNLEG00000016867) #14	ENSNLEG00000016894 #15	ENSNLEG00000032692	RBPJ (ENSNLEG00000016895) #16	CCKAR (ENSNLEG00000016913) #17	TBC1D19 (ENSNLEG00000016920) #18	STIM2 (ENSNLEG00000016942) #20	ENSNLEG00000030375 #22	ENSNLEG00000030577	ARAP2 (ENSNLEG00000016967) #24	DTHD1 (ENSNLEG00000016995) #25	NWD2 (ENSNLEG00000016998) #26	C4orf19 (ENSNLEG00000035513) #27	RELL1 (ENSNLEG00000017005) #28	PGM2 (ENSNLEG00000017010) #29	ENSNLEG00000035345	TBC1D1 (ENSNLEG00000017022) #30	KLF3 (ENSNLEG00000017046) #31	TLR10 (ENSNLEG00000017048)	TLR1 (ENSNLEG00000017057)	ENSNLEG00000031854	FAM114A1 (ENSNLEG00000017062) #32	TMEM156 (ENSNLEG00000030669) #33
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00770000121815	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES	17	SOD3 (ENSPPYG00000014642)	CCDC149 (ENSPPYG00000014643) #7	LGI2 (ENSPPYG00000039828) #8	SEPSECS (ENSPPYG00000014645) #9	PI4K2B (ENSPPYG00000014646) #10	ZCCHC4 (ENSPPYG00000014647) #11	ANAPC4 (ENSPPYG00000034769)	SLC34A2 (ENSPPYG00000014649) #13	ENSPPYG00000031785	SEL1L3 (ENSPPYG00000014650) #14	SMIM20 (ENSPPYG00000014651) #15	RBPJ (ENSPPYG00000014652) #16	CCKAR (ENSPPYG00000014653) #17	TBC1D19 (ENSPPYG00000014654) #18	STIM2 (ENSPPYG00000014655) #20	PCDH7 (ENSPPYG00000031272) #22	ENSPPYG00000031494 #22	ENSPPYG00000034474	ARAP2 (ENSPPYG00000032983) #24	DTHD1 (ENSPPYG00000037872) #25	NWD2 (ENSPPYG00000030808) #26	C4orf19 (ENSPPYG00000038950) #27	RELL1 (ENSPPYG00000031559) #28	PGM2 (ENSPPYG00000014661) #29	TBC1D1 (ENSPPYG00000014663) #30	KLF3 (ENSPPYG00000014666) #31	TLR10 (ENSPPYG00000014667)	TLR1 (ENSPPYG00000014668)	TLR6 (ENSPPYG00000014669)	FAM114A1 (ENSPPYG00000014670) #32	TMEM156 (ENSPPYG00000014671) #33
Orangutan	MODERN SPECIES	17	CCDC149 (ENSPPYG00000014643) #7	LGI2 (ENSPPYG00000039828) #8	SEPSECS (ENSPPYG00000014645) #9	PI4K2B (ENSPPYG00000014646) #10	ZCCHC4 (ENSPPYG00000014647) #11	ANAPC4 (ENSPPYG00000034769)	SLC34A2 (ENSPPYG00000014649) #13	ENSPPYG00000031785	SEL1L3 (ENSPPYG00000014650) #14	SMIM20 (ENSPPYG00000014651) #15	RBPJ (ENSPPYG00000014652) #16	CCKAR (ENSPPYG00000014653) #17	TBC1D19 (ENSPPYG00000014654) #18	STIM2 (ENSPPYG00000014655) #20	PCDH7 (ENSPPYG00000031272) #22	ENSPPYG00000031494 #22	ENSPPYG00000034474	ARAP2 (ENSPPYG00000032983) #24	DTHD1 (ENSPPYG00000037872) #25	NWD2 (ENSPPYG00000030808) #26	C4orf19 (ENSPPYG00000038950) #27	RELL1 (ENSPPYG00000031559) #28	PGM2 (ENSPPYG00000014661) #29	TBC1D1 (ENSPPYG00000014663) #30	KLF3 (ENSPPYG00000014666) #31	TLR10 (ENSPPYG00000014667)	TLR1 (ENSPPYG00000014668)	TLR6 (ENSPPYG00000014669)	FAM114A1 (ENSPPYG00000014670) #32	TMEM156 (ENSPPYG00000014671) #33	KLHL5 (ENSPPYG00000015288) #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00770000121815	ENSGT00940000157949 #30	ENSGT00390000009693.m.b	ENSGT00950000183098.b.a.b.ib.a	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884
Gorilla	MODERN SPECIES	17	DHX15 (ENSGGOG00000016819)	CCDC149 (ENSGGOG00000010166) #7	LGI2 (ENSGGOG00000023809) #8	SEPSECS (ENSGGOG00000025528) #9	PI4K2B (ENSGGOG00000014057) #10	ZCCHC4 (ENSGGOG00000016476) #11	ANAPC4 (ENSGGOG00000025631)	SLC34A2 (ENSGGOG00000016668) #13	SEL1L3 (ENSGGOG00000001417) #14	ENSGGOG00000013757 #15	RBPJ (ENSGGOG00000004582) #16	CCKAR (ENSGGOG00000015177) #17	TBC1D19 (ENSGGOG00000025239) #18	STIM2 (ENSGGOG00000000474) #20	ENSGGOG00000038446	PCDH7 (ENSGGOG00000004233) #22	ENSGGOG00000043031	ENSGGOG00000043518	ENSGGOG00000038770	ENSGGOG00000040174	ARAP2 (ENSGGOG00000007115) #24	DTHD1 (ENSGGOG00000009433) #25	NWD2 (ENSGGOG00000016156) #26	C4orf19 (ENSGGOG00000017146) #27	RELL1 (ENSGGOG00000014944) #28	PGM2 (ENSGGOG00000013725) #29	ENSGGOG00000024170	ENSGGOG00000007187 #30	PTTG2 (ENSGGOG00000037103)	ENSGGOG00000039341	KLF3 (ENSGGOG00000004667) #31
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00770000121815	ENSGT00940000157949 #30	ENSGT00390000009693.m.b	ENSGT00950000183098.b.a.b.ib.a	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884
Human	MODERN SPECIES	16	DHX15 (ENSG00000109606)	SOD3 (ENSG00000109610)	CCDC149 (ENSG00000181982) #7	LGI2 (ENSG00000153012) #8	SEPSECS (ENSG00000109618) #9	PI4K2B (ENSG00000038210) #10	ZCCHC4 (ENSG00000168228) #11	ANAPC4 (ENSG00000053900)	SLC34A2 (ENSG00000157765) #13	SEL1L3 (ENSG00000091490) #14	SMIM20 (ENSG00000250317) #15	RBPJ (ENSG00000168214) #16	CCKAR (ENSG00000163394) #17	TBC1D19 (ENSG00000109680) #18	STIM2 (ENSG00000109689) #20	PCDH7 (ENSG00000169851) #22	ARAP2 (ENSG00000047365) #24	DTHD1 (ENSG00000197057) #25	NWD2 (ENSG00000174145) #26	C4orf19 (ENSG00000154274) #27	RELL1 (ENSG00000181826) #28	PGM2 (ENSG00000169299) #29	TBC1D1 (ENSG00000065882) #30	PTTG2 (ENSG00000250254)	KLF3 (ENSG00000109787) #31	TLR10 (ENSG00000174123)	TLR1 (ENSG00000174125)	TLR6 (ENSG00000174130)	FAM114A1 (ENSG00000197712) #32	TMEM156 (ENSG00000121895) #33	KLHL5 (ENSG00000109790) #34
Pan	ANCESTRAL SPECIES	7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00510000047602.q.a.b	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00950000182922.a.a.a.a.v.a.b	ENSGT00940000156247 #29	ENSGT00770000121815	ENSGT00940000157949 #30	ENSGT00390000009693.m.b	ENSGT00950000183098.b.a.b.ib.a	ENSGT00940000157456 #31	ENSGT00940000163662
Bonobo	MODERN SPECIES	17	LGI2 (ENSPPAG00000043039) #8	SEPSECS (ENSPPAG00000037022) #9	PI4K2B (ENSPPAG00000040564) #10	ZCCHC4 (ENSPPAG00000031116) #11	ANAPC4 (ENSPPAG00000040743)	SLC34A2 (ENSPPAG00000031554) #13	SEL1L3 (ENSPPAG00000026819) #14	SMIM20 (ENSPPAG00000037198) #15	RBPJ (ENSPPAG00000042016) #16	CCKAR (ENSPPAG00000027751) #17	ENSPPAG00000027805	TBC1D19 (ENSPPAG00000039764) #18	STIM2 (ENSPPAG00000031199) #20	ENSPPAG00000016299	ENSPPAG00000042295	ENSPPAG00000042304 #22	ENSPPAG00000000803	ENSPPAG00000011861	ENSPPAG00000043616	ARAP2 (ENSPPAG00000039913) #24	DTHD1 (ENSPPAG00000036797) #25	NWD2 (ENSPPAG00000043576) #26	C4orf19 (ENSPPAG00000036566) #27	RELL1 (ENSPPAG00000030468) #28	ENSPPAG00000010345	PGM2 (ENSPPAG00000041476) #29	ENSPPAG00000025879	TBC1D1 (ENSPPAG00000037604) #30	PTTG2 (ENSPPAG00000026206)	ENSPPAG00000042246	KLF3 (ENSPPAG00000023728) #31
Chimpanzee	MODERN SPECIES	17	CCDC149 (ENSPTRG00000015957) #7	LGI2 (ENSPTRG00000045126) #8	SEPSECS (ENSPTRG00000015959) #9	PI4K2B (ENSPTRG00000015960) #10	ZCCHC4 (ENSPTRG00000015962) #11	ANAPC4 (ENSPTRG00000015963)	SLC34A2 (ENSPTRG00000015965) #13	SEL1L3 (ENSPTRG00000015966) #14	ENSPTRG00000015967 #15	RBPJ (ENSPTRG00000015968) #16	CCKAR (ENSPTRG00000015969) #17	TBC1D19 (ENSPTRG00000015970) #18	STIM2 (ENSPTRG00000015971) #20	ENSPTRG00000052671	ENSPTRG00000045470	PCDH7 (ENSPTRG00000015972) #22	ENSPTRG00000051795	ENSPTRG00000044907	ARAP2 (ENSPTRG00000015973) #24	DTHD1 (ENSPTRG00000022641) #25	NWD2 (ENSPTRG00000015976) #26	C4H4orf19 (ENSPTRG00000015977) #27	RELL1 (ENSPTRG00000015978) #28	ENSPTRG00000045616	PGM2 (ENSPTRG00000015979) #29	ENSPTRG00000051394	TBC1D1 (ENSPTRG00000015981) #30	PTTG2 (ENSPTRG00000043626)	ENSPTRG00000044539	KLF3 (ENSPTRG00000015983) #31	TLR10 (ENSPTRG00000015984)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00390000009693.m.b	ENSGT00910000147773	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884
Rhinopithecus	ANCESTRAL SPECIES	1007															ENSGT01030000234945	ENSGT00940000157221 #22
Black snub-nosed monkey	MODERN SPECIES	527															ENSRBIG00000029172	PCDH7 (ENSRBIG00000028984) #22	ENSRBIG00000030878	ENSRBIG00000023474
Golden snub-nosed monkey	MODERN SPECIES	2206																PCDH7 (ENSRROG00000037720) #22	ENSRROG00000032978	ENSRROG00000032578	ENSRROG00000020487
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00390000009693.m.b	ENSGT00910000147773	ENSGT00900000143434	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884
Vervet Monkey	MODERN SPECIES	19	CCDC149 (ENSCSAG00000016607) #7	LGI2 (ENSCSAG00000016614) #8	SEPSECS (ENSCSAG00000016622) #9	PI4K2B (ENSCSAG00000016627) #10	ZCCHC4 (ENSCSAG00000016633) #11	ANAPC4 (ENSCSAG00000016642)	SLC34A2 (ENSCSAG00000016651) #13	SEL1L3 (ENSCSAG00000016666) #14	ENSCSAG00000016669 #15	RBPJ (ENSCSAG00000016678) #16	CCKAR (ENSCSAG00000016683) #17	TBC1D19 (ENSCSAG00000016710) #18	ENSCSAG00000016720	STIM2 (ENSCSAG00000016726) #20	ENSCSAG00000016727	PCDH7 (ENSCSAG00000016736) #22	ENSCSAG00000016748	ARAP2 (ENSCSAG00000016819) #24	DTHD1 (ENSCSAG00000016834) #25	NWD2 (ENSCSAG00000016836) #26	C4orf19 (ENSCSAG00000016838) #27	RELL1 (ENSCSAG00000016840) #28	PGM2 (ENSCSAG00000016846) #29	TBC1D1 (ENSCSAG00000016865) #30	KLF3 (ENSCSAG00000016868) #31	TLR10 (ENSCSAG00000019693)	TLR1 (ENSCSAG00000019692)	TLR6 (ENSCSAG00000019691)	FAM114A1 (ENSCSAG00000016873) #32	TMEM156 (ENSCSAG00000016878) #33	KLHL5 (ENSCSAG00000016884) #34
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.i.a #15	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000002398.j #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #20	ENSGT00390000013931.a.b.b.`b.b	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00910000147191	ENSGT00860000135660	ENSGT00940000164947	ENSGT00390000014092.k.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000170408	ENSGT00950000183010.a.a.a.b.a.a.a.a.b.a	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30
Macaca	ANCESTRAL SPECIES	25	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.i.a #15	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #20	ENSGT00390000013931.a.b.b.`b.b	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00910000147204	ENSGT00910000147191	ENSGT00940000164947	ENSGT00390000014092.k.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00950000183010.a.a.a.b.a.a.a.a.b.a	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456.a #31	ENSGT00940000163662	ENSGT00940000162884
Pig-tailed macaque	MODERN SPECIES	141	PI4K2B (ENSMNEG00000010678) #10	ZCCHC4 (ENSMNEG00000027221) #11	ANAPC4 (ENSMNEG00000044256)	SLC34A2 (ENSMNEG00000033278) #13	SEL1L3 (ENSMNEG00000044018) #14	ENSMNEG00000045287 #15	ENSMNEG00000027453	RBPJ (ENSMNEG00000037915) #16	CCKAR (ENSMNEG00000038424) #17	TBC1D19 (ENSMNEG00000031445) #18	ENSMNEG00000032694	STIM2 (ENSMNEG00000032563) #20	ENSMNEG00000029234	ENSMNEG00000038617	ENSMNEG00000034187	PCDH7 (ENSMNEG00000044686) #22	ENSMNEG00000008266	ENSMNEG00000010411	ENSMNEG00000034911	ENSMNEG00000019076	ARAP2 (ENSMNEG00000033019) #24	DTHD1 (ENSMNEG00000045184) #25	ENSMNEG00000043393	NWD2 (ENSMNEG00000038103) #26	C4orf19 (ENSMNEG00000032287) #27	RELL1 (ENSMNEG00000030854) #28	PGM2 (ENSMNEG00000014173) #29	PTTG2 (ENSMNEG00000042141)	TBC1D1 (ENSMNEG00000039653) #30	TLR10 (ENSMNEG00000015099)	TLR1 (ENSMNEG00000004407)
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.a.b.b.a	ENSGT01100000263493.a.b.a.a.b.a.a.b.b.b.a.b.a.a.a.a.a.b	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.i.a #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.a.c.b	ENSGT00940000157221 #22	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.b.a.b.b	ENSGT00940000164947	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01100000263493.a.b.a.a.a.b.b.b.b.c.a	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT01030000240362	ENSGT00940000157456.a #31	ENSGT00940000163662	ENSGT00940000162884
Rhesus	MODERN SPECIES	15	LGI2 (ENSMMUG00000060440) #8	SEPSECS (ENSMMUG00000019784) #9	PI4K2B (ENSMMUG00000003629) #10	ANAPC4 (ENSMMUG00000004458)	ENSMMUG00000053638	ENSMMUG00000049554	SLC34A2 (ENSMMUG00000021135) #13	SEL1L3 (ENSMMUG00000020349) #14	ENSMMUG00000006680 #15	RBPJ (ENSMMUG00000015828) #16	CCKAR (ENSMMUG00000049298) #17	TBC1D19 (ENSMMUG00000019239) #18	STIM2 (ENSMMUG00000009439) #20	ENSMMUG00000055119	ENSMMUG00000060404	PCDH7 (ENSMMUG00000011898) #22	ENSMMUG00000056986	ENSMMUG00000062143	ENSMMUG00000059032	ARAP2 (ENSMMUG00000006871) #24	DTHD1 (ENSMMUG00000006875) #25	NWD2 (ENSMMUG00000003676) #26	C5H4orf19 (ENSMMUG00000009691) #27	RELL1 (ENSMMUG00000017630) #28	PGM2 (ENSMMUG00000000232) #29	ENSMMUG00000060134	TBC1D1 (ENSMMUG00000000237) #30	ENSMMUG00000055079	KLF3 (ENSMMUG00000003363) #31	TLR10 (ENSMMUG00000003373)	TLR1 (ENSMMUG00000016754)
Crab-eating macaque	MODERN SPECIES	15	ENSMFAG00000056821	ZCCHC4 (ENSMFAG00000033636) #11	ANAPC4 (ENSMFAG00000037891)	ENSMFAG00000065080	ENSMFAG00000049099	SLC34A2 (ENSMFAG00000020407) #13	SEL1L3 (ENSMFAG00000002093) #14	SMIM20 (ENSMFAG00000033269) #15	ENSMFAG00000049001	RBPJ (ENSMFAG00000001779) #16	CCKAR (ENSMFAG00000003530) #17	TBC1D19 (ENSMFAG00000000286) #18	STIM2 (ENSMFAG00000034185) #20	ENSMFAG00000056885	ENSMFAG00000036136	PCDH7 (ENSMFAG00000040327) #22	ENSMFAG00000049710	ENSMFAG00000064925	ENSMFAG00000065581	ENSMFAG00000039044	ENSMFAG00000047594	ENSMFAG00000055627	ENSMFAG00000055647	ENSMFAG00000050317	ARAP2 (ENSMFAG00000041357) #24	DTHD1 (ENSMFAG00000003247) #25	NWD2 (ENSMFAG00000003920) #26	C4orf19 (ENSMFAG00000035785) #27	RELL1 (ENSMFAG00000029954) #28	ENSMFAG00000065307	PGM2 (ENSMFAG00000033991) #29
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.j #15	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #20	ENSGT00390000013931.a.b.b.`b.b	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00910000147191	ENSGT00860000135660	ENSGT00940000164947	ENSGT00390000014092.k.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000170408	ENSGT00950000183010.a.a.a.b.a.a.a.a.b.a	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30
Olive baboon	MODERN SPECIES	13	ENSPANG00000041131	SEL1L3 (ENSPANG00000000072) #14	SMIM20 (ENSPANG00000032807) #15	ENSPANG00000030947	RBPJ (ENSPANG00000021176) #16	ENSPANG00000050241	CCKAR (ENSPANG00000019759) #17	ENSPANG00000045844	ENSPANG00000037534	TBC1D19 (ENSPANG00000019571) #18	ENSPANG00000033456	STIM2 (ENSPANG00000016909) #20	ENSPANG00000042786	ENSPANG00000040765	ENSPANG00000043923	PCDH7 (ENSPANG00000015663) #22	ENSPANG00000043052	ENSPANG00000008054	ENSPANG00000046206	ARAP2 (ENSPANG00000021175) #24	DTHD1 (ENSPANG00000013371) #25	NWD2 (ENSPANG00000015662) #26	C4orf19 (ENSPANG00000018422) #27	RELL1 (ENSPANG00000018258) #28	PGM2 (ENSPANG00000024997) #29	ENSPANG00000048792	TBC1D1 (ENSPANG00000015230) #30	KLF3 (ENSPANG00000000584) #31	TLR10 (ENSPANG00000034361)	TLR1 (ENSPANG00000018956)	TLR6 (ENSPANG00000045913)
Cercopithecinae_d	ANCESTRAL SPECIES	91	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.j #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000008128.c.a.b.a	ENSGT00390000000214.a.b #20	ENSGT00390000013931.a.b.b.`b.b	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00910000147204	ENSGT00910000147191	ENSGT00860000135660
Drill	MODERN SPECIES	1135															ENSMLEG00000042103	PCDH7 (ENSMLEG00000030766) #22	ENSMLEG00000038389	ENSMLEG00000027763	ENSMLEG00000040839	ENSMLEG00000027412	ENSMLEG00000028869
Sooty mangabey	MODERN SPECIES	551	LGI2 (ENSCATG00000043883) #8	SEPSECS (ENSCATG00000041245) #9	PI4K2B (ENSCATG00000015768) #10	ZCCHC4 (ENSCATG00000028628) #11	ANAPC4 (ENSCATG00000035985)	SLC34A2 (ENSCATG00000029842) #13	SEL1L3 (ENSCATG00000038183) #14	ENSCATG00000032458 #15	RBPJ (ENSCATG00000044181) #16	CCKAR (ENSCATG00000038819) #17	TBC1D19 (ENSCATG00000009189) #18	ENSCATG00000039543	STIM2 (ENSCATG00000030868) #20	ENSCATG00000018899	ENSCATG00000044558	PCDH7 (ENSCATG00000039870) #22	ENSCATG00000023352	ENSCATG00000041818
Strepsirrhini	ANCESTRAL SPECIES	18																ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000165717	ENSGT00940000154788	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Bushbaby	MODERN SPECIES	265																PCDH7 (ENSOGAG00000026512) #22
Lemuriformes	ANCESTRAL SPECIES	77																ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000165717	ENSGT00940000154788	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Mouse lemur	MODERN SPECIES	26	CCDC149 (ENSMICG00000017475) #7	LGI2 (ENSMICG00000002206) #8	SEPSECS (ENSMICG00000028863) #9	PI4K2B (ENSMICG00000017176) #10	ZCCHC4 (ENSMICG00000017179) #11	ANAPC4 (ENSMICG00000017188)	ENSMICG00000033125	SLC34A2 (ENSMICG00000045359) #13	SEL1L3 (ENSMICG00000017216) #14	SMIM20 (ENSMICG00000017222) #15	RBPJ (ENSMICG00000016014) #16	CCKAR (ENSMICG00000016023) #17	TBC1D19 (ENSMICG00000015879) #18	STIM2 (ENSMICG00000005093) #20	ENSMICG00000032983	PCDH7 (ENSMICG00000028654) #22	ENSMICG00000029850	ENSMICG00000034379	ENSMICG00000048142	ENSMICG00000030890	ARAP2 (ENSMICG00000016496) #24	DTHD1 (ENSMICG00000016515) #25	ENSMICG00000042181	ENSMICG00000046422	ENSMICG00000037614	NWD2 (ENSMICG00000015234) #26	ENSMICG00000027163	ENSMICG00000031749	C4orf19 (ENSMICG00000041786) #27	RELL1 (ENSMICG00000046783) #28	ENSMICG00000012328
Lemuriformes_a	ANCESTRAL SPECIES	373																ENSGT00940000157221 #22	ENSGT00860000135660
Greater bamboo lemur	MODERN SPECIES	677	EFCAB3 (ENSPSMG00000008951)	ITGB3 (ENSPSMG00000008901)	MYL4 (ENSPSMG00000008830)	CDC27 (ENSPSMG00000008773)	KANSL1 (ENSPSMG00000008570)	ENSPSMG00000008465	MAPT (ENSPSMG00000008406)	SPPL2C (ENSPSMG00000008318)	CRHR1 (ENSPSMG00000008174)	NSF (ENSPSMG00000007903)	WNT3 (ENSPSMG00000007829)	WNT9B (ENSPSMG00000007811)	GOSR2 (ENSPSMG00000007792)	RPRML (ENSPSMG00000007718)	ENSPSMG00000007711	PCDH7 (ENSPSMG00000007691) #22	ENSPSMG00000007682
Coquerels sifaka	MODERN SPECIES	675																PCDH7 (ENSPCOG00000016022) #22	ENSPCOG00000021509	PIGG (ENSPCOG00000013385)	SH3TC1 (ENSPCOG00000018269)	ABLIM2 (ENSPCOG00000027716)	AFAP1 (ENSPCOG00000014313)	SORCS2 (ENSPCOG00000023609)	GRPEL1 (ENSPCOG00000005210)	TADA2B (ENSPCOG00000002766)	ENSPCOG00000022637
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157221 #22
Common shrew	MODERN SPECIES	5049																PCDH7 (ENSSARG00000001002) #22
Hedgehog	MODERN SPECIES	6488																PCDH7 (ENSEEUG00000006741) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Carnivora	ANCESTRAL SPECIES	5	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##23	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Felidae	ANCESTRAL SPECIES	4	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##23	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00390000016760.c.b	ENSGT00390000007888.c.b.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Panthera	ANCESTRAL SPECIES	5	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##23	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00390000016760.c.b	ENSGT00390000007888.c.b.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00970000193677	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##23	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00390000016760.c.b	ENSGT00390000007888.c.b.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
lion	MODERN SPECIES	4	CCDC149 (ENSPLOG00000014724) #7	LGI2 (ENSPLOG00000014551) #8	SEPSECS (ENSPLOG00000014441) #9	PI4K2B (ENSPLOG00000014324) #10	ZCCHC4 (ENSPLOG00000014263) #11	ANAPC4 (ENSPLOG00000014198)	SLC34A2 (ENSPLOG00000013975) #13	SEL1L3 (ENSPLOG00000013599) #14	ENSPLOG00000013526 #15	RBPJ (ENSPLOG00000013224) #16	CCKAR (ENSPLOG00000013057) #17	ENSPLOG00000013017	ENSPLOG00000012957 ##23	TBC1D19 (ENSPLOG00000012764) #18	STIM2 (ENSPLOG00000012668) #20	PCDH7 (ENSPLOG00000012591) #22	ENSPLOG00000012507	ENSPLOG00000012476	ENSPLOG00000012458	ENSPLOG00000012421	ENSPLOG00000012384	ARAP2 (ENSPLOG00000012184) #24	DTHD1 (ENSPLOG00000011795) #25	ENSPLOG00000011702	CSN2 (ENSPLOG00000011567)	CSN1S1 (ENSPLOG00000011114)	SULT1E1 (ENSPLOG00000010948)	ENSPLOG00000010896	SULT1B1 (ENSPLOG00000010842)	UGT2A1 (ENSPLOG00000010701)	ENSPLOG00000010637
leopard	MODERN SPECIES	25	CCDC149 (ENSPPRG00000005074) #7	LGI2 (ENSPPRG00000005473) #8	SEPSECS (ENSPPRG00000005618) #9	PI4K2B (ENSPPRG00000006151) #10	ZCCHC4 (ENSPPRG00000006329) #11	ANAPC4 (ENSPPRG00000006664)	SLC34A2 (ENSPPRG00000008628) #13	ENSPPRG00000009004	SEL1L3 (ENSPPRG00000018369) #14	SMIM20 (ENSPPRG00000018812) #15	RBPJ (ENSPPRG00000024386) #16	CCKAR (ENSPPRG00000024018) #17	ENSPPRG00000023897 ##23	TBC1D19 (ENSPPRG00000023259) #18	STIM2 (ENSPPRG00000000768) #20	PCDH7 (ENSPPRG00000001154) #22	ENSPPRG00000021125
Tiger	MODERN SPECIES	217																PCDH7 (ENSPTIG00000018748) #22	ENSPTIG00000008328
Cat	MODERN SPECIES	235	CCDC149 (ENSFCAG00000015383) #7	LGI2 (ENSFCAG00000032361) #8	SEPSECS (ENSFCAG00000023094) #9	PI4K2B (ENSFCAG00000025109) #10	ZCCHC4 (ENSFCAG00000023396) #11	ANAPC4 (ENSFCAG00000042946)	SLC34A2 (ENSFCAG00000029965) #13	SEL1L3 (ENSFCAG00000013720) #14	SMIM20 (ENSFCAG00000046718) #15	RBPJ (ENSFCAG00000030363) #16	CCKAR (ENSFCAG00000007718) #17	CAR1 (ENSFCAG00000049200)	ENSFCAG00000028607 ##23	TBC1D19 (ENSFCAG00000029340) #18	STIM2 (ENSFCAG00000025940) #20	PCDH7 (ENSFCAG00000014975) #22	ENSFCAG00000032725	ENSFCAG00000052913	ENSFCAG00000048265	ENSFCAG00000033885	ARAP2 (ENSFCAG00000004726) #24	DTHD1 (ENSFCAG00000014534) #25	NWD2 (ENSFCAG00000031252) #26	ENSFCAG00000050369	CB1H4orf19 (ENSFCAG00000000031) #27	RELL1 (ENSFCAG00000000032) #28	PGM2 (ENSFCAG00000004734) #29	TBC1D1 (ENSFCAG00000052530) #30	KLF3 (ENSFCAG00000028338) #31	TLR10 (ENSFCAG00000007666)	TLR1 (ENSFCAG00000031748)
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00970000193677	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00970000193677	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000169973	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Mustelinae	ANCESTRAL SPECIES	298																ENSGT00940000157221 #22	ENSGT00860000135660
Ferret	MODERN SPECIES	375														ENSMPUG00000018758	ENSMPUG00000018760	PCDH7 (ENSMPUG00000003135) #22
American mink	MODERN SPECIES	184														ENSNVIG00000020167	ENSNVIG00000020181	PCDH7 (ENSNVIG00000020186) #22	ENSNVIG00000020196	ENSNVIG00000020199
Ursidae	ANCESTRAL SPECIES	29	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b ##23	ENSGT00390000015965 #18	ENSGT00970000193677	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Giant Panda	MODERN SPECIES	2	CCDC149 (ENSAMEG00000008440) #7	LGI2 (ENSAMEG00000008417) #8	SEPSECS (ENSAMEG00000014700) #9	PI4K2B (ENSAMEG00000014735) #10	ZCCHC4 (ENSAMEG00000027841) #11	ANAPC4 (ENSAMEG00000018114)	SLC34A2 (ENSAMEG00000018105) #13	SEL1L3 (ENSAMEG00000018094) #14	SMIM20 (ENSAMEG00000018092) #15	RBPJ (ENSAMEG00000018082) #16	CCKAR (ENSAMEG00000014732) #17	CAR1 (ENSAMEG00000031321)	ENSAMEG00000023854 ##23	TBC1D19 (ENSAMEG00000014677) #18	STIM2 (ENSAMEG00000014649) #20	PCDH7 (ENSAMEG00000026428) #22	ENSAMEG00000029477	ARAP2 (ENSAMEG00000005492) #24	DTHD1 (ENSAMEG00000005528) #25	NWD2 (ENSAMEG00000024908) #26	C4orf19 (ENSAMEG00000011277) #27	RELL1 (ENSAMEG00000011264) #28	PGM2 (ENSAMEG00000011214) #29	TBC1D1 (ENSAMEG00000011195) #30	KLF3 (ENSAMEG00000010056) #31	TLR10 (ENSAMEG00000018488)	TLR1 (ENSAMEG00000018486)	TLR6 (ENSAMEG00000018483)	FAM114A1 (ENSAMEG00000010034) #32	ENSAMEG00000019419	TMEM156 (ENSAMEG00000010032) #33
Ursus	ANCESTRAL SPECIES	180	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00970000193677	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	128	SEPSECS (ENSUMAG00000003690) #9	PI4K2B (ENSUMAG00000003697) #10	ZCCHC4 (ENSUMAG00000003758) #11	ANAPC4 (ENSUMAG00000003767)	SLC34A2 (ENSUMAG00000003792) #13	SEL1L3 (ENSUMAG00000003892) #14	SMIM20 (ENSUMAG00000004164) #15	RBPJ (ENSUMAG00000004171) #16	CCKAR (ENSUMAG00000004192) #17	ENSUMAG00000004204	TBC1D19 (ENSUMAG00000004209) #18	ENSUMAG00000004223	STIM2 (ENSUMAG00000004243) #20	ENSUMAG00000004345	ENSUMAG00000004356 #22	ENSUMAG00000004367 #22	ENSUMAG00000004368	DSEL (ENSUMAG00000004377)	TMX3 (ENSUMAG00000004385)	CCDC102B (ENSUMAG00000004396)	DOK6 (ENSUMAG00000004418)	CD226 (ENSUMAG00000004424)	ENSUMAG00000004435	ENSUMAG00000004474	ENSUMAG00000004554	ENSUMAG00000004564	NETO1 (ENSUMAG00000004574)	FBXO15 (ENSUMAG00000004592)	TIMM21 (ENSUMAG00000004599)	ENSUMAG00000004601	C18orf63 (ENSUMAG00000004610)
Polar bear	MODERN SPECIES	128	LGI2 (ENSUMAG00000003678) #8	SEPSECS (ENSUMAG00000003690) #9	PI4K2B (ENSUMAG00000003697) #10	ZCCHC4 (ENSUMAG00000003758) #11	ANAPC4 (ENSUMAG00000003767)	SLC34A2 (ENSUMAG00000003792) #13	SEL1L3 (ENSUMAG00000003892) #14	SMIM20 (ENSUMAG00000004164) #15	RBPJ (ENSUMAG00000004171) #16	CCKAR (ENSUMAG00000004192) #17	ENSUMAG00000004204	TBC1D19 (ENSUMAG00000004209) #18	ENSUMAG00000004223	STIM2 (ENSUMAG00000004243) #20	ENSUMAG00000004345	ENSUMAG00000004356 #22	ENSUMAG00000004367 #22	ENSUMAG00000004368	DSEL (ENSUMAG00000004377)	TMX3 (ENSUMAG00000004385)	CCDC102B (ENSUMAG00000004396)	DOK6 (ENSUMAG00000004418)	CD226 (ENSUMAG00000004424)	ENSUMAG00000004435	ENSUMAG00000004474	ENSUMAG00000004554	ENSUMAG00000004564	NETO1 (ENSUMAG00000004574)	FBXO15 (ENSUMAG00000004592)	TIMM21 (ENSUMAG00000004599)	ENSUMAG00000004601
American black bear	MODERN SPECIES	4029																PCDH7 (ENSUAMG00000022390) #22
Canidae	ANCESTRAL SPECIES	21	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00970000193677	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556.i #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00970000193677	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Dog	MODERN SPECIES	22	PI4K2B (ENSCAFG00845007474) #10	ZCCHC4 (ENSCAFG00845007308) #11	ANAPC4 (ENSCAFG00845007014)	SLC34A2 (ENSCAFG00845006845) #13	SEL1L3 (ENSCAFG00845006276) #14	SMIM20 (ENSCAFG00845006127) #15	ENSCAFG00845006105	RBPJ (ENSCAFG00845005977) #16	CCKAR (ENSCAFG00845005880) #17	CAR1 (ENSCAFG00845005825)	TBC1D19 (ENSCAFG00845005743) #18	STIM2 (ENSCAFG00845005670) #20	ENSCAFG00845005634	ENSCAFG00845005572	ENSCAFG00845005559	PCDH7 (ENSCAFG00845005515) #22	ENSCAFG00845005487	ARAP2 (ENSCAFG00845005336) #24	DTHD1 (ENSCAFG00845005244) #25	ENSCAFG00845005226	NWD2 (ENSCAFG00845005206) #26	ENSCAFG00845005184 #27	RELL1 (ENSCAFG00845005126) #28	PGM2 (ENSCAFG00845005108) #29	ENSCAFG00845005098	TBC1D1 (ENSCAFG00845005015) #30	KLF3 (ENSCAFG00845004980) #31	TLR1 (ENSCAFG00845004950)	FAM114A1 (ENSCAFG00845004930) #32	TMEM156 (ENSCAFG00845004925) #33	KLHL5 (ENSCAFG00845004801) #34
Dingo	MODERN SPECIES	138	SEPSECS (ENSCAFG00020027249) #9	PI4K2B (ENSCAFG00020027250) #10	ENSCAFG00020027252 #11	ENSCAFG00020027253 #11	ANAPC4 (ENSCAFG00020027256)	SLC34A2 (ENSCAFG00020027270) #13	SEL1L3 (ENSCAFG00020027291) #14	ENSCAFG00020027299 #15	RBPJ (ENSCAFG00020027303) #16	CCKAR (ENSCAFG00020027326) #17	TBC1D19 (ENSCAFG00020027330) #18	ENSCAFG00020027342	STIM2 (ENSCAFG00020027345) #20	ENSCAFG00020027346	ENSCAFG00020027359	PCDH7 (ENSCAFG00020027362) #22	ENSCAFG00020027369	ARAP2 (ENSCAFG00020027371) #24	DTHD1 (ENSCAFG00020027385) #25	NWD2 (ENSCAFG00020027393) #26	RELL1 (ENSCAFG00020027397) #28	PGM2 (ENSCAFG00020027401) #29	TBC1D1 (ENSCAFG00020027410) #30	KLF3 (ENSCAFG00020027419) #31	TLR10 (ENSCAFG00020027421)	ENSCAFG00020000157	TLR1 (ENSCAFG00020000220)	TLR6 (ENSCAFG00020000234)	FAM114A1 (ENSCAFG00020000247) #32	TMEM156 (ENSCAFG00020000358) #33	KLHL5 (ENSCAFG00020000397) #34
Red fox	DUPLICATION
Red fox	MODERN SPECIES	1	CCDC149 (ENSVVUG00000013407) #7	LGI2 (ENSVVUG00000013458) #8	SEPSECS (ENSVVUG00000013476) #9	PI4K2B (ENSVVUG00000013490) #10	ZCCHC4 (ENSVVUG00000013506) #11	ANAPC4 (ENSVVUG00000013531)	SLC34A2 (ENSVVUG00000013552) #13	SEL1L3 (ENSVVUG00000013804) #14	SMIM20 (ENSVVUG00000013812) #15	RBPJ (ENSVVUG00000013837) #16	CCKAR (ENSVVUG00000013858) #17	TBC1D19 (ENSVVUG00000013875) #18	ENSVVUG00000013949	STIM2 (ENSVVUG00000013958) #20	ENSVVUG00000014058	PCDH7 (ENSVVUG00000014104) #22	ENSVVUG00000014123 #22	ENSVVUG00000014202	ENSVVUG00000014241	ENSVVUG00000014337	ARAP2 (ENSVVUG00000014348) #24	DTHD1 (ENSVVUG00000014412) #25	NWD2 (ENSVVUG00000014429) #26	ENSVVUG00000014438	RELL1 (ENSVVUG00000014443) #28	PGM2 (ENSVVUG00000014454) #29	TBC1D1 (ENSVVUG00000014485) #30	KLF3 (ENSVVUG00000014522) #31	TLR10 (ENSVVUG00000014533)	TLR1 (ENSVVUG00000014535)	TLR6 (ENSVVUG00000014537)
Red fox	MODERN SPECIES	1	LGI2 (ENSVVUG00000013458) #8	SEPSECS (ENSVVUG00000013476) #9	PI4K2B (ENSVVUG00000013490) #10	ZCCHC4 (ENSVVUG00000013506) #11	ANAPC4 (ENSVVUG00000013531)	SLC34A2 (ENSVVUG00000013552) #13	SEL1L3 (ENSVVUG00000013804) #14	SMIM20 (ENSVVUG00000013812) #15	RBPJ (ENSVVUG00000013837) #16	CCKAR (ENSVVUG00000013858) #17	TBC1D19 (ENSVVUG00000013875) #18	ENSVVUG00000013949	STIM2 (ENSVVUG00000013958) #20	ENSVVUG00000014058	PCDH7 (ENSVVUG00000014104) #22	ENSVVUG00000014123 #22	ENSVVUG00000014202	ENSVVUG00000014241	ENSVVUG00000014337	ARAP2 (ENSVVUG00000014348) #24	DTHD1 (ENSVVUG00000014412) #25	NWD2 (ENSVVUG00000014429) #26	ENSVVUG00000014438	RELL1 (ENSVVUG00000014443) #28	PGM2 (ENSVVUG00000014454) #29	TBC1D1 (ENSVVUG00000014485) #30	KLF3 (ENSVVUG00000014522) #31	TLR10 (ENSVVUG00000014533)	TLR1 (ENSVVUG00000014535)	TLR6 (ENSVVUG00000014537)	FAM114A1 (ENSVVUG00000014548) #32
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Equus	ANCESTRAL SPECIES	12	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Donkey	MODERN SPECIES	22	SOD3 (ENSEASG00005033891)	CCDC149 (ENSEASG00005008000) #7	LGI2 (ENSEASG00005008001) #8	SEPSECS (ENSEASG00005008003) #9	PI4K2B (ENSEASG00005008006) #10	ZCCHC4 (ENSEASG00005008011) #11	ANAPC4 (ENSEASG00005008014)	SLC34A2 (ENSEASG00005008016) #13	SEL1L3 (ENSEASG00005008020) #14	SMIM20 (ENSEASG00005024155) #15	RBPJ (ENSEASG00005008027) #16	CCKAR (ENSEASG00005038229) #17	TBC1D19 (ENSEASG00005008046) #18	STIM2 (ENSEASG00005008051) #20	ENSEASG00005008057	PCDH7 (ENSEASG00005008070) #22	ARAP2 (ENSEASG00005008083) #24	DTHD1 (ENSEASG00005008101) #25	NWD2 (ENSEASG00005008108) #26	C4orf19 (ENSEASG00005025129) #27	RELL1 (ENSEASG00005008112) #28	ENSEASG00005035380 #29	ENSEASG00005008115 #29	TBC1D1 (ENSEASG00005008118) #30	KLF3 (ENSEASG00005008124) #31	TLR10 (ENSEASG00005008127)	TLR1 (ENSEASG00005008131)	TLR6 (ENSEASG00005008134)	FAM114A1 (ENSEASG00005008136) #32	TMEM156 (ENSEASG00005008152) #33	KLHL5 (ENSEASG00005008160) #34
Horse	MODERN SPECIES	22	LGI2 (ENSECAG00000016152) #8	SEPSECS (ENSECAG00000009932) #9	PI4K2B (ENSECAG00000008251) #10	ZCCHC4 (ENSECAG00000007352) #11	ANAPC4 (ENSECAG00000017692)	SLC34A2 (ENSECAG00000013315) #13	SEL1L3 (ENSECAG00000000638) #14	SMIM20 (ENSECAG00000041550) #15	ENSECAG00000002201	RBPJ (ENSECAG00000019257) #16	CCKAR (ENSECAG00000017266) #17	TBC1D19 (ENSECAG00000011680) #18	STIM2 (ENSECAG00000009481) #20	ENSECAG00000054073	ENSECAG00000027755	PCDH7 (ENSECAG00000000599) #22	ARAP2 (ENSECAG00000018069) #24	DTHD1 (ENSECAG00000017513) #25	ENSECAG00000050605	NWD2 (ENSECAG00000017312) #26	C3H4orf19 (ENSECAG00000017301) #27	RELL1 (ENSECAG00000016126) #28	PGM2 (ENSECAG00000009090) #29	TBC1D1 (ENSECAG00000022162) #30	KLF3 (ENSECAG00000021855) #31	TLR10 (ENSECAG00000020892)	TLR1 (ENSECAG00000038588)	TLR6 (ENSECAG00000001958)	FAM114A1 (ENSECAG00000016060) #32	TMEM156 (ENSECAG00000015792) #33	KLHL5 (ENSECAG00000008627) #34
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Greater horseshoe bat	MODERN SPECIES	23	LGI2 (ENSRFEG00010001447) #8	SEPSECS (ENSRFEG00010001416) #9	PI4K2B (ENSRFEG00010001371) #10	ZCCHC4 (ENSRFEG00010001312) #11	ANAPC4 (ENSRFEG00010001248)	SLC34A2 (ENSRFEG00010001179) #13	SEL1L3 (ENSRFEG00010001115) #14	SMIM20 (ENSRFEG00010001089) #15	ENSRFEG00010001077	ENSRFEG00010001068	RBPJ (ENSRFEG00010000987) #16	CCKAR (ENSRFEG00010000933) #17	TBC1D19 (ENSRFEG00010000865) #18	STIM2 (ENSRFEG00010000812) #20	ENSRFEG00010000792	PCDH7 (ENSRFEG00010000761) #22	ENSRFEG00010000734	ENSRFEG00010000675 #24	DTHD1 (ENSRFEG00010000588) #25	NWD2 (ENSRFEG00010000529) #26	C4orf19 (ENSRFEG00010000507) #27	RELL1 (ENSRFEG00010000481) #28	PGM2 (ENSRFEG00010000444) #29	TBC1D1 (ENSRFEG00010000328) #30	KLF3 (ENSRFEG00010000276) #31	TLR10 (ENSRFEG00010000243)	TLR1 (ENSRFEG00010000229)	TLR6 (ENSRFEG00010004901)	FAM114A1 (ENSRFEG00010004887) #32	TMEM156 (ENSRFEG00010004878) #33	KLHL5 (ENSRFEG00010004840) #34
Megabat	MODERN SPECIES	2179																PCDH7 (ENSPVAG00000013973) #22	ENSPVAG00000013978
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.d #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00960000191194	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Blue whale	MODERN SPECIES	16	CCDC149 (ENSBMSG00010001719) #7	LGI2 (ENSBMSG00010001673) #8	SEPSECS (ENSBMSG00010001650) #9	PI4K2B (ENSBMSG00010001625) #10	ZCCHC4 (ENSBMSG00010001603) #11	ANAPC4 (ENSBMSG00010001569)	SLC34A2 (ENSBMSG00010001530) #13	SEL1L3 (ENSBMSG00010001472) #14	SMIM20 (ENSBMSG00010001389) #15	ENSBMSG00010001239 #16	CCKAR (ENSBMSG00010001131) #17	TBC1D19 (ENSBMSG00010001070) #18	ENSBMSG00010001022	STIM2 (ENSBMSG00010000991) #20	ENSBMSG00010000959	PCDH7 (ENSBMSG00010000937) #22	ENSBMSG00010000928	ARAP2 (ENSBMSG00010000782) #24	DTHD1 (ENSBMSG00010000578) #25	ENSBMSG00010000528	ENSBMSG00010000513	NWD2 (ENSBMSG00010000492) #26	C4orf19 (ENSBMSG00010000470) #27	RELL1 (ENSBMSG00010000412) #28	PGM2 (ENSBMSG00010000369) #29	TBC1D1 (ENSBMSG00010000294) #30	KLF3 (ENSBMSG00010000250) #31	TLR10 (ENSBMSG00010000209)	TLR1 (ENSBMSG00010000182)	FAM114A1 (ENSBMSG00010000149) #32	TMEM156 (ENSBMSG00010006449) #33
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.d #15	ENSGT00390000005197.a.z #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00970000193421.C.b.d.a.a.a	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160197 #24	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00960000191194	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Odontoceti_a	ANCESTRAL SPECIES	23												ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00970000193421.C.b.d.a.a.a	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160197 #24	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00960000191194	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Dolphin	MODERN SPECIES	1787																PCDH7 (ENSTTRG00000000724) #22
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00390000005197.a.y.a #16	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.d #15	ENSGT00390000005197.a.z #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00970000193421.C.b.d.a.a.a	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000160787.b	ENSGT00940000160197 #24	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b #25	ENSGT00390000018316.b.b.g.b	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00960000191194	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00390000005197.a.y.a #16	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.d #15	ENSGT00390000005197.a.z #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00990000211064	ENSGT00940000155534.f.b	ENSGT00940000160787.b	ENSGT00940000160197 #24	ENSGT00940000155541.C.eb.b	ENSGT00940000153404.b #25	ENSGT00390000018316.b.b.g.b	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00960000191194	ENSGT00940000157949 #30	ENSGT00940000157456 #31
Narwhal	MODERN SPECIES	307	LGI2 (ENSMMNG00015008731) #8	SEPSECS (ENSMMNG00015008713) #9	PI4K2B (ENSMMNG00015008695) #10	ZCCHC4 (ENSMMNG00015008659) #11	ANAPC4 (ENSMMNG00015008631)	ENSMMNG00015008616 #16	SLC34A2 (ENSMMNG00015008603) #13	SEL1L3 (ENSMMNG00015008572) #14	ENSMMNG00015008545 #15	ENSMMNG00015008477 #16	CCKAR (ENSMMNG00015008421) #17	TBC1D19 (ENSMMNG00015008369) #18	ENSMMNG00015008341	STIM2 (ENSMMNG00015008324) #20	ENSMMNG00015008293	PCDH7 (ENSMMNG00015008274) #22	ENSMMNG00015008263	ENSMMNG00015008253	ENSMMNG00015008245	ENSMMNG00015008234	ARAP2 (ENSMMNG00015008196) #24	ENSMMNG00015008174	DTHD1 (ENSMMNG00015008156) #25	ENSMMNG00015008131	ENSMMNG00015008120	NWD2 (ENSMMNG00015008105) #26	ENSMMNG00015008090	C4orf19 (ENSMMNG00015008076) #27	RELL1 (ENSMMNG00015008056) #28	PGM2 (ENSMMNG00015008030) #29	ENSMMNG00015008010
Beluga whale	MODERN SPECIES	77	CCDC149 (ENSDLEG00000014195) #7	LGI2 (ENSDLEG00000014089) #8	SEPSECS (ENSDLEG00000014056) #9	PI4K2B (ENSDLEG00000014029) #10	ZCCHC4 (ENSDLEG00000013994) #11	ANAPC4 (ENSDLEG00000013885)	SLC34A2 (ENSDLEG00000013774) #13	SEL1L3 (ENSDLEG00000013692) #14	SMIM20 (ENSDLEG00000013675) #15	RBPJ (ENSDLEG00000013407) #16	CCKAR (ENSDLEG00000013378) #17	TBC1D19 (ENSDLEG00000013283) #18	ENSDLEG00000013230	STIM2 (ENSDLEG00000013214) #20	ENSDLEG00000013183	PCDH7 (ENSDLEG00000013164) #22	ENSDLEG00000013137	ENSDLEG00000015493	ENSDLEG00000015489	ENSDLEG00000015483	ARAP2 (ENSDLEG00000015400) #24	ENSDLEG00000015377	DTHD1 (ENSDLEG00000015353) #25	ENSDLEG00000015342	ENSDLEG00000015338	ENSDLEG00000015330	NWD2 (ENSDLEG00000015317) #26	ENSDLEG00000015301	CUNH4orf19 (ENSDLEG00000015289) #27	RELL1 (ENSDLEG00000015269) #28	PGM2 (ENSDLEG00000015218) #29
Vaquita	MODERN SPECIES	16	SEPSECS (ENSPSNG00000020956) #9	PI4K2B (ENSPSNG00000021008) #10	ZCCHC4 (ENSPSNG00000021077) #11	ANAPC4 (ENSPSNG00000021117)	ENSPSNG00000021159 #16	SLC34A2 (ENSPSNG00000021188) #13	SEL1L3 (ENSPSNG00000021270) #14	SMIM20 (ENSPSNG00000021406) #15	ENSPSNG00000021513 #16	CCKAR (ENSPSNG00000021657) #17	TBC1D19 (ENSPSNG00000021702) #18	ENSPSNG00000021771	STIM2 (ENSPSNG00000021816) #20	ENSPSNG00000021862	ENSPSNG00000000096	PCDH7 (ENSPSNG00000000169) #22	ENSPSNG00000000209	ENSPSNG00000000226	ENSPSNG00000000255	ENSPSNG00000000272	ENSPSNG00000000293	ENSPSNG00000000307	ARAP2 (ENSPSNG00000000450) #24	ENSPSNG00000000612	NWD2 (ENSPSNG00000000639) #26	ENSPSNG00000000670	C4orf19 (ENSPSNG00000000685) #27	RELL1 (ENSPSNG00000000700) #28	PGM2 (ENSPSNG00000000735) #29	TBC1D1 (ENSPSNG00000000856) #30	KLF3 (ENSPSNG00000000987) #31
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	18	LGI2 (ENSPCTG00005011194) #8	SEPSECS (ENSPCTG00005011169) #9	PI4K2B (ENSPCTG00005011034) #10	ZCCHC4 (ENSPCTG00005010952) #11	ANAPC4 (ENSPCTG00005010830)	ENSPCTG00005010721 #13	SEL1L3 (ENSPCTG00005010228) #14	ENSPCTG00005010143 #13	ENSPCTG00005009702 #16	CCKAR (ENSPCTG00005009612) #17	TBC1D19 (ENSPCTG00005009308) #18	ENSPCTG00005009237	STIM2 (ENSPCTG00005008859) #20	ENSPCTG00005008821	ENSPCTG00005008787	PCDH7 (ENSPCTG00005008773) #22	ENSPCTG00005008758	ENSPCTG00005008723	ENSPCTG00005008684 #24	ENSPCTG00005018478	DTHD1 (ENSPCTG00005018074) #25	ENSPCTG00005018056	ENSPCTG00005018031	ENSPCTG00005018016	NWD2 (ENSPCTG00005017924) #26	C7H4orf19 (ENSPCTG00005017891) #27	RELL1 (ENSPCTG00005017831) #28	PGM2 (ENSPCTG00005017784) #29	TBC1D1 (ENSPCTG00005017560) #30	KLF3 (ENSPCTG00005017490) #31	TLR10 (ENSPCTG00005017472)
Sperm whale	MODERN SPECIES	228																ENSPCTG00005019465 #22
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.f #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949.c.b #30	ENSGT01030000235076	ENSGT00940000157949.c.a #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32
Yarkand deer	MODERN SPECIES	8	LGI2 (ENSCHYG00000007044) #8	SEPSECS (ENSCHYG00000007094) #9	PI4K2B (ENSCHYG00000007192) #10	ZCCHC4 (ENSCHYG00000007309) #11	ANAPC4 (ENSCHYG00000007432)	SEL1L3 (ENSCHYG00000007618) #14	ENSCHYG00000008010 #15	ENSCHYG00000008030	RBPJ (ENSCHYG00000008084) #16	CCKAR (ENSCHYG00000008569) #17	TBC1D19 (ENSCHYG00000008635) #18	ENSCHYG00000009099	STIM2 (ENSCHYG00000009144) #20	ENSCHYG00000009335	ENSCHYG00000009369	PCDH7 (ENSCHYG00000009443) #22	ENSCHYG00000009498	ARAP2 (ENSCHYG00000009613) #24	DTHD1 (ENSCHYG00000010657) #25	NWD2 (ENSCHYG00000011104) #26	C4orf19 (ENSCHYG00000011230) #27	RELL1 (ENSCHYG00000011263) #28	ENSCHYG00000011389	PGM2 (ENSCHYG00000011452) #29	TBC1D1 (ENSCHYG00000011548) #30	ENSCHYG00000012545	ENSCHYG00000012569	KLF3 (ENSCHYG00000012587) #31	TLR10 (ENSCHYG00000012632)	TLR1 (ENSCHYG00000012651)	TLR6 (ENSCHYG00000012665)
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.f #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00860000135660	ENSGT00940000154788	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949.c.b #30	ENSGT01030000235076	ENSGT00940000157949.c.a #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Siberian musk deer	MODERN SPECIES	1269	ENSMMSG00000013962 #11	ANAPC4 (ENSMMSG00000013938)	ENSMMSG00000013917	SLC34A2 (ENSMMSG00000013857) #13	SEL1L3 (ENSMMSG00000013767) #14	ENSMMSG00000013746 #15	ENSMMSG00000013732	RBPJ (ENSMMSG00000013568) #16	CCKAR (ENSMMSG00000013523) #17	ENSMMSG00000013500	TBC1D19 (ENSMMSG00000013351) #18	STIM2 (ENSMMSG00000013185) #20	ENSMMSG00000013164	ENSMMSG00000013140	ENSMMSG00000013133	PCDH7 (ENSMMSG00000013089) #22	ENSMMSG00000013078	ENSMMSG00000013060	ENSMMSG00000013043
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.f #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000154788.ob	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000153446.a.a.f	ENSGT00940000156247 #29	ENSGT00940000157949.c.b #30	ENSGT01030000235076	ENSGT00940000157949.c.a #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Caprinae	ANCESTRAL SPECIES	13	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.e.b #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000165919	ENSGT00390000003718.d.tb.a.a	ENSGT00940000157221 #22	ENSGT00940000154788.ob	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949.c.b #30	ENSGT00940000157949.c.a #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358.l.a #34
Goat	MODERN SPECIES	25	LGI2 (ENSCHIG00000022089) #8	SEPSECS (ENSCHIG00000010810) #9	PI4K2B (ENSCHIG00000022484) #10	ZCCHC4 (ENSCHIG00000022645) #11	ANAPC4 (ENSCHIG00000023609)	SLC34A2 (ENSCHIG00000015739) #13	SEL1L3 (ENSCHIG00000020813) #14	ENSCHIG00000016018	ENSCHIG00000026046 #15	RBPJ (ENSCHIG00000022041) #16	CCKAR (ENSCHIG00000024465) #17	TBC1D19 (ENSCHIG00000015018) #18	STIM2 (ENSCHIG00000004257) #20	ENSCHIG00000013741	ENSCHIG00000010665	PCDH7 (ENSCHIG00000003875) #22	ENSCHIG00000023385	ENSCHIG00000009154	ARAP2 (ENSCHIG00000014093) #24	ENSCHIG00000022196	DTHD1 (ENSCHIG00000018566) #25	NWD2 (ENSCHIG00000004289) #26	C4orf19 (ENSCHIG00000015946) #27	RELL1 (ENSCHIG00000005379) #28	ENSCHIG00000022059	PGM2 (ENSCHIG00000015657) #29	ENSCHIG00000008333 #30	KLF3 (ENSCHIG00000023066) #31	TLR10 (ENSCHIG00000010004)	TLR6 (ENSCHIG00000022377)	FAM114A1 (ENSCHIG00000022521) #32
Rambouillet Sheep	MODERN SPECIES	22	SEPSECS (ENSOARG00020015918) #9	PI4K2B (ENSOARG00020015990) #10	ZCCHC4 (ENSOARG00020016087) #11	ANAPC4 (ENSOARG00020016174)	ENSOARG00020017059	SLC34A2 (ENSOARG00020017154) #13	SEL1L3 (ENSOARG00020017417) #14	ENSOARG00020019074	ENSOARG00020019119 #15	RBPJ (ENSOARG00020019203) #16	CCKAR (ENSOARG00020019878) #17	TBC1D19 (ENSOARG00020019954) #18	STIM2 (ENSOARG00020020357) #20	ENSOARG00020020464	ENSOARG00020020499	PCDH7 (ENSOARG00020020567) #22	ENSOARG00020020648	ARAP2 (ENSOARG00020020778) #24	DTHD1 (ENSOARG00020021575) #25	NWD2 (ENSOARG00020021937) #26	C6H4orf19 (ENSOARG00020021966) #27	RELL1 (ENSOARG00020021988) #28	PGM2 (ENSOARG00020022008) #29	TBC1D1 (ENSOARG00020022096) #30	KLF3 (ENSOARG00020022589) #31	FAM114A1 (ENSOARG00020022672) #32	TMEM156 (ENSOARG00020022716) #33	KLHL5 (ENSOARG00020022757) #34	WDR19 (ENSOARG00020023069) #35	RFC1 (ENSOARG00020023327) #36	KLB (ENSOARG00020023555) #37
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.f.b.b #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000154788.nb.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00960000190968	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.a	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000153446.a.a.f	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949.c.a #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884
American bison	MODERN SPECIES	3060	DHX15 (ENSBBBG00000001321)	SOD3 (ENSBBBG00000001360)	CCDC149 (ENSBBBG00000001370) #7	LGI2 (ENSBBBG00000015299) #8	SEPSECS (ENSBBBG00000015291) #9	PI4K2B (ENSBBBG00000015277) #10	ZCCHC4 (ENSBBBG00000003522) #11	ANAPC4 (ENSBBBG00000003767)	SLC34A2 (ENSBBBG00000015150) #13	SEL1L3 (ENSBBBG00000015090) #14	ENSBBBG00000015008 #15	ENSBBBG00000014989 #16	CCKAR (ENSBBBG00000000817) #17	TBC1D19 (ENSBBBG00000000826) #18	STIM2 (ENSBBBG00000000908) #20	PCDH7 (ENSBBBG00000001030) #22	ENSBBBG00000001043	ENSBBBG00000001055
Bos	ANCESTRAL SPECIES	15	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.f.b.b #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.b.a.b	ENSGT00940000154788.nb.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00960000190968	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.a	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000153446.a.a.f	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949.c.a #30	ENSGT00940000157456 #31	ENSGT00940000163662
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398.f.b.b #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000165919	ENSGT00940000157221 #22	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.b.a.b	ENSGT00940000154788.nb.a	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00960000190968	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000153446.a.a.f	ENSGT00940000156247 #29	ENSGT00960000191194	ENSGT00940000157949.c.a #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884
Cow	MODERN SPECIES	25	SOD3 (ENSBTAG00000013980)	CCDC149 (ENSBTAG00000021940) #7	LGI2 (ENSBTAG00000017390) #8	SEPSECS (ENSBTAG00000014616) #9	PI4K2B (ENSBTAG00000006492) #10	ZCCHC4 (ENSBTAG00000007240) #11	ANAPC4 (ENSBTAG00000000646)	SLC34A2 (ENSBTAG00000001545) #13	SEL1L3 (ENSBTAG00000002299) #14	SMIM20 (ENSBTAG00000003897) #15	RBPJ (ENSBTAG00000003602) #16	CCKAR (ENSBTAG00000004988) #17	TBC1D19 (ENSBTAG00000033214) #18	STIM2 (ENSBTAG00000019353) #20	ENSBTAG00000018885	PCDH7 (ENSBTAG00000000061) #22	ENSBTAG00000048536	ARAP2 (ENSBTAG00000039922) #24	DTHD1 (ENSBTAG00000009833) #25	ENSBTAG00000050655	NWD2 (ENSBTAG00000001491) #26	C6H4orf19 (ENSBTAG00000006643) #27	RELL1 (ENSBTAG00000004329) #28	ENSBTAG00000053088	PGM2 (ENSBTAG00000005773) #29	ENSBTAG00000052370	TBC1D1 (ENSBTAG00000013699) #30	KLF3 (ENSBTAG00000017488) #31	TLR10 (ENSBTAG00000014042)	TLR6 (ENSBTAG00000014031)	FAM114A1 (ENSBTAG00000033160) #32
Hybrid Bos Indicus	MODERN SPECIES	25	LGI2 (ENSBIXG00005015662) #8	SEPSECS (ENSBIXG00005015627) #9	PI4K2B (ENSBIXG00005007139) #10	ZCCHC4 (ENSBIXG00005015528) #11	ANAPC4 (ENSBIXG00005015494)	SLC34A2 (ENSBIXG00005015405) #13	SEL1L3 (ENSBIXG00005015302) #14	ENSBIXG00005015232 #15	ENSBIXG00005015160 #16	ENSBIXG00005014915	CCKAR (ENSBIXG00005014904) #17	TBC1D19 (ENSBIXG00005014867) #18	STIM2 (ENSBIXG00005014774) #20	ENSBIXG00005014691	ENSBIXG00005014672	PCDH7 (ENSBIXG00005014583) #22	ENSBIXG00005014562	ENSBIXG00005014544	ARAP2 (ENSBIXG00005014502) #24	DTHD1 (ENSBIXG00005014282) #25	ENSBIXG00005014188	NWD2 (ENSBIXG00005001843) #26	C4orf19 (ENSBIXG00005014137) #27	RELL1 (ENSBIXG00005014109) #28	PGM2 (ENSBIXG00005014080) #29	ENSBIXG00005001823	TBC1D1 (ENSBIXG00005006366) #30	KLF3 (ENSBIXG00005013914) #31	TLR10 (ENSBIXG00005013883)	TLR1 (ENSBIXG00005013874)	TLR6 (ENSBIXG00005013851)
Bos_a	ANCESTRAL SPECIES	21													ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.b.a.b	ENSGT00940000154788.nb.a	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.a	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000153446.a.a.f	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949.c.a #30	ENSGT00940000157949.c.b #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201
Domestic yak	MODERN SPECIES	25	SOD3 (ENSBGRG00000014092)	CCDC149 (ENSBGRG00000013831) #7	LGI2 (ENSBGRG00000013655) #8	ENSBGRG00000013588 #9	ENSBGRG00000013553 #9	PI4K2B (ENSBGRG00000013424) #10	ZCCHC4 (ENSBGRG00000013290) #11	ANAPC4 (ENSBGRG00000012791)	SLC34A2 (ENSBGRG00000012616) #13	SEL1L3 (ENSBGRG00000012074) #14	ENSBGRG00000011943 #15	ENSBGRG00000011453 #16	CCKAR (ENSBGRG00000011346) #17	TBC1D19 (ENSBGRG00000010907) #18	STIM2 (ENSBGRG00000010679) #20	PCDH7 (ENSBGRG00000010538) #22	ENSBGRG00000010506	ENSBGRG00000010405	ENSBGRG00000010382	ENSBGRG00000005033	ARAP2 (ENSBGRG00000004941) #24	ENSBGRG00000004904	DTHD1 (ENSBGRG00000004754) #25	ENSBGRG00000004728	NWD2 (ENSBGRG00000004653) #26	C4orf19 (ENSBGRG00000004620) #27	RELL1 (ENSBGRG00000004570) #28	ENSBGRG00000004557	PGM2 (ENSBGRG00000004476) #29	ENSBGRG00000004450	ENSBGRG00000004393 #30
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	898													RGS21 (ENSBMUG00000020812)	RGS1 (ENSBMUG00000020831)	RGS13 (ENSBMUG00000020851)	ENSBMUG00000020872 #22	RGS2 (ENSBMUG00000020885)	UCHL5 (ENSBMUG00000020903)	RO60 (ENSBMUG00000020925)	ENSBMUG00000020946	CDC73 (ENSBMUG00000020995)	B3GALT2 (ENSBMUG00000021020)
Wild yak	MODERN SPECIES	1294															ENSBMUG00000012748	PCDH7 (ENSBMUG00000012739) #22	ENSBMUG00000012716	ENSBMUG00000012709
Camelidae	ANCESTRAL SPECIES	22	ENSGT00900000143693	ENSGT00940000155800	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Arabian camel	MODERN SPECIES	11	ENSCDRG00005015845	DHX15 (ENSCDRG00005015802)	CCDC149 (ENSCDRG00005015468) #7	LGI2 (ENSCDRG00005015363) #8	SEPSECS (ENSCDRG00005015323) #9	PI4K2B (ENSCDRG00005015238) #10	ZCCHC4 (ENSCDRG00005015096) #11	ANAPC4 (ENSCDRG00005014928)	SLC34A2 (ENSCDRG00005014773) #13	SEL1L3 (ENSCDRG00005014618) #14	SMIM20 (ENSCDRG00005014579) #15	RBPJ (ENSCDRG00005013306) #16	CCKAR (ENSCDRG00005013202) #17	TBC1D19 (ENSCDRG00005012784) #18	STIM2 (ENSCDRG00005011898) #20	PCDH7 (ENSCDRG00005011781) #22	ENSCDRG00005011725	ARAP2 (ENSCDRG00005011185) #24	DTHD1 (ENSCDRG00005010874) #25	NWD2 (ENSCDRG00005010804) #26	C4orf19 (ENSCDRG00005010758) #27	RELL1 (ENSCDRG00005010713) #28	ENSCDRG00005010670	PGM2 (ENSCDRG00005010550) #29	TBC1D1 (ENSCDRG00005010383) #30	KLF3 (ENSCDRG00005010297) #31	TLR10 (ENSCDRG00005010269)	TLR1 (ENSCDRG00005010240)	TLR6 (ENSCDRG00005010208)	FAM114A1 (ENSCDRG00005010142) #32	TMEM156 (ENSCDRG00005010059) #33
Alpaca	MODERN SPECIES	1876																PCDH7 (ENSVPAG00000001125) #22
Suina	ANCESTRAL SPECIES	33	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00940000155145.qb	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.b #20	ENSGT00390000000214.a.b.a #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Pig	MODERN SPECIES	16	CCDC149 (ENSSSCG00000023001) #7	LGI2 (ENSSSCG00000028927) #8	SEPSECS (ENSSSCG00000025315) #9	PI4K2B (ENSSSCG00000027340) #10	ZCCHC4 (ENSSSCG00000028581) #11	ANAPC4 (ENSSSCG00000025902)	ENSSSCG00000028632	SLC34A2 (ENSSSCG00000008758) #13	SEL1L3 (ENSSSCG00000022446) #14	ENSSSCG00000040571 #15	RBPJ (ENSSSCG00000022155) #16	CCKAR (ENSSSCG00000061661) #17	TBC1D19 (ENSSSCG00000008761) #18	STIM2 (ENSSSCG00000008762) #20	ENSSSCG00000032413 #20	PCDH7 (ENSSSCG00000008765) #22	ENSSSCG00000008767	ARAP2 (ENSSSCG00000008768) #24	DTHD1 (ENSSSCG00000028471) #25	ENSSSCG00000008769	NWD2 (ENSSSCG00000008770) #26	C4orf19 (ENSSSCG00000008771) #27	RELL1 (ENSSSCG00000008772) #28	PGM2 (ENSSSCG00000008773) #29	TBC1D1 (ENSSSCG00000028983) #30	KLF3 (ENSSSCG00000036488) #31	ENSSSCG00000035208	FAM114A1 (ENSSSCG00000008785) #32	TLR10 (ENSSSCG00000027877)	TLR1 (ENSSSCG00000026583)	TLR6 (ENSSSCG00000026592)
Chacoan peccary	MODERN SPECIES	960	CCDC149 (ENSCWAG00000021648) #7	LGI2 (ENSCWAG00000011876) #8	SEPSECS (ENSCWAG00000011958) #9	PI4K2B (ENSCWAG00000011991) #10	ZCCHC4 (ENSCWAG00000012130) #11	ANAPC4 (ENSCWAG00000012255)	ENSCWAG00000012413	SLC34A2 (ENSCWAG00000012428) #13	SEL1L3 (ENSCWAG00000012543) #14	SMIM20 (ENSCWAG00000012836) #15	RBPJ (ENSCWAG00000012916) #16	CCKAR (ENSCWAG00000013281) #17	TBC1D19 (ENSCWAG00000013346) #18	STIM2 (ENSCWAG00000013559) #20	ENSCWAG00000013963	PCDH7 (ENSCWAG00000014012) #22	ARAP2 (ENSCWAG00000014103) #24	DTHD1 (ENSCWAG00000014349) #25	ENSCWAG00000014755	NWD2 (ENSCWAG00000014812) #26	C4orf19 (ENSCWAG00000014871) #27	RELL1 (ENSCWAG00000014911) #28	PGM2 (ENSCWAG00000014943) #29	ENSCWAG00000014989	TBC1D1 (ENSCWAG00000015011) #30	KLF3 (ENSCWAG00000015160) #31	TLR10 (ENSCWAG00000015213)	TLR1 (ENSCWAG00000015227)	TLR6 (ENSCWAG00000015241)	FAM114A1 (ENSCWAG00000015256) #32	TMEM156 (ENSCWAG00000015295) #33
Atlantogenata	ANCESTRAL SPECIES	46	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000157221 #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1992													ENSDNOG00000037623	ENSDNOG00000043357	ENSDNOG00000010006 #22	ENSDNOG00000035280 #22	ENSDNOG00000047037	ENSDNOG00000033050	ENSDNOG00000041562
Armadillo	MODERN SPECIES	1992														ENSDNOG00000037623	ENSDNOG00000043357	ENSDNOG00000010006 #22	ENSDNOG00000035280 #22	ENSDNOG00000047037	ENSDNOG00000033050	ENSDNOG00000041562
Afrotheria	ANCESTRAL SPECIES	53	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Tenrec	MODERN SPECIES	6308																PCDH7 (ENSETEG00000006360) #22
Afrotheria_a	ANCESTRAL SPECIES	50	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Hyrax	MODERN SPECIES	5321																PCDH7 (ENSPCAG00000016092) #22	ENSPCAG00000016152
Elephant	DUPLICATION
Elephant	MODERN SPECIES	164	SOD3 (ENSLAFG00000022899)	CCDC149 (ENSLAFG00000007108) #7	LGI2 (ENSLAFG00000002475) #8	SEPSECS (ENSLAFG00000010804) #9	PI4K2B (ENSLAFG00000012228) #10	ZCCHC4 (ENSLAFG00000012234) #11	ANAPC4 (ENSLAFG00000012242)	ENSLAFG00000026426 #13	ENSLAFG00000013325 #13	SEL1L3 (ENSLAFG00000012362) #14	ENSLAFG00000007091 #15	RBPJ (ENSLAFG00000000410) #16	CCKAR (ENSLAFG00000000294) #17	TBC1D19 (ENSLAFG00000009636) #18	STIM2 (ENSLAFG00000003344) #20	PCDH7 (ENSLAFG00000010937) #22	ARAP2 (ENSLAFG00000003991) #24	NWD2 (ENSLAFG00000020908) #26	C4orf19 (ENSLAFG00000030311) #27	RELL1 (ENSLAFG00000016276) #28	PGM2 (ENSLAFG00000005067) #29	TBC1D1 (ENSLAFG00000005076) #30	KLF3 (ENSLAFG00000032166) #31	TLR10 (ENSLAFG00000008544)	TLR1 (ENSLAFG00000008549)	TLR6 (ENSLAFG00000032091)	FAM114A1 (ENSLAFG00000013559) #32	TMEM156 (ENSLAFG00000002280) #33	KLHL5 (ENSLAFG00000002282) #34	WDR19 (ENSLAFG00000015372) #35	RFC1 (ENSLAFG00000011467) #36
Elephant	MODERN SPECIES	2	LARS1 (ENSLAFG00000000318)	PLAC8L1 (ENSLAFG00000000316)	SH3RF2 (ENSLAFG00000000315)	GRXCR2 (ENSLAFG00000018464)	PRELID2 (ENSLAFG00000018461)	KCTD16 (ENSLAFG00000016966)	YIPF5 (ENSLAFG00000016961)	NR3C1 (ENSLAFG00000005015)	ARHGAP26 (ENSLAFG00000017734)	FGF1 (ENSLAFG00000005484)	NDFIP1 (ENSLAFG00000016964)	GNPDA1 (ENSLAFG00000003999)	RNF14 (ENSLAFG00000007438)	PCDH12 (ENSLAFG00000017085)	DELE1 (ENSLAFG00000017081)	ENSLAFG00000032418 #22	ARAP3 (ENSLAFG00000007967)	FCHSD1 (ENSLAFG00000028321)	RELL2 (ENSLAFG00000031336)	ENSLAFG00000007960	DIAPH1 (ENSLAFG00000007578)	PCDHGC5 (ENSLAFG00000004545)	ENSLAFG00000001302	PCDHB3 (ENSLAFG00000008803)	PCDHB2 (ENSLAFG00000009131)	PCDHB1 (ENSLAFG00000005554)	ENSLAFG00000014278	PCDHA3 (ENSLAFG00000001880)	PCDHAC2 (ENSLAFG00000014281)	ENSLAFG00000021930	ZMAT2 (ENSLAFG00000018601)
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b.q #13	ENSGT00950000183177.a.a.b.r #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Opossum	MODERN SPECIES	4	ENSMODG00000041870 #13	ENSMODG00000025532 #13	ENSMODG00000027534	ENSMODG00000025549 #13	ENSMODG00000042552 #13	ENSMODG00000051279 #13	SEL1L3 (ENSMODG00000000154) #14	SMIM20 (ENSMODG00000000137) #15	RBPJ (ENSMODG00000000129) #16	ENSMODG00000047093	ENSMODG00000039806	CCKAR (ENSMODG00000000113) #17	TBC1D19 (ENSMODG00000000109) #18	STIM2 (ENSMODG00000000083) #20	ENSMODG00000046673	PCDH7 (ENSMODG00000024790) #22	ENSMODG00000047017	ARAP2 (ENSMODG00000020518) #24	DTHD1 (ENSMODG00000020520) #25	ENSMODG00000036956	NWD2 (ENSMODG00000040392) #26	ENSMODG00000020525 #27	RELL1 (ENSMODG00000020526) #28	ENSMODG00000020527 #29	TBC1D1 (ENSMODG00000020529) #30	KLF3 (ENSMODG00000038618) #31	TLR10 (ENSMODG00000020531)	TLR6 (ENSMODG00000020532)	FAM114A1 (ENSMODG00000020533) #32	ENSMODG00000029269	KLHL5 (ENSMODG00000020538) #34
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b.q #13	ENSGT00950000183177.a.a.b.r #13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b.q #13	ENSGT00940000159983 #14	ENSGT00390000002398.a #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.a.a.b.q #13	ENSGT00940000159983 #14	ENSGT00390000002398.a #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00950000185589	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000163662	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Common wonbat	MODERN SPECIES	1054	PI4K2B (ENSVURG00010004516) #10	ZCCHC4 (ENSVURG00010004655) #11	ANAPC4 (ENSVURG00010004724)	ENSVURG00010004753	ENSVURG00010004760	ENSVURG00010004770 #13	ENSVURG00010004876 #13	ENSVURG00010005005	SEL1L3 (ENSVURG00010005010) #14	ENSVURG00010005042 #15	RBPJ (ENSVURG00010005079) #16	CCKAR (ENSVURG00010005131) #17	TBC1D19 (ENSVURG00010005165) #18	STIM2 (ENSVURG00010005237) #20	ENSVURG00010005715	PCDH7 (ENSVURG00010005757) #22	ARAP2 (ENSVURG00010005816) #24	DTHD1 (ENSVURG00010005897) #25	ENSVURG00010005913	NWD2 (ENSVURG00010005952) #26	ENSVURG00010006035 #27	RELL1 (ENSVURG00010006044) #28	PGM2 (ENSVURG00010006062) #29	TBC1D1 (ENSVURG00010006143) #30	KLF3 (ENSVURG00010006204) #31	TLR10 (ENSVURG00010006211)	TLR6 (ENSVURG00010006215)	FAM114A1 (ENSVURG00010006229) #32	ENSVURG00010006270 #33	KLHL5 (ENSVURG00010006281) #34	ENSVURG00010006370 #35
koala	MODERN SPECIES	2	CCDC149 (ENSPCIG00000004052) #7	LGI2 (ENSPCIG00000004064) #8	SEPSECS (ENSPCIG00000004071) #9	PI4K2B (ENSPCIG00000004075) #10	ZCCHC4 (ENSPCIG00000004082) #11	ANAPC4 (ENSPCIG00000004096)	SLC34A2 (ENSPCIG00000010248) #13	SEL1L3 (ENSPCIG00000020485) #14	ENSPCIG00000020488 #15	RBPJ (ENSPCIG00000020491) #16	CCKAR (ENSPCIG00000020497) #17	TBC1D19 (ENSPCIG00000031776) #18	STIM2 (ENSPCIG00000034168) #20	H2AZ1 (ENSPCIG00000027205)	ENSPCIG00000032746	PCDH7 (ENSPCIG00000019678) #22	ENSPCIG00000018003	ARAP2 (ENSPCIG00000035555) #24	DTHD1 (ENSPCIG00000006852) #25	ENSPCIG00000006865	ENSPCIG00000034342	ENSPCIG00000033128 #26	ENSPCIG00000027065 #27	RELL1 (ENSPCIG00000025460) #28	PGM2 (ENSPCIG00000020881) #29	TBC1D1 (ENSPCIG00000020731) #30	KLF3 (ENSPCIG00000019465) #31	TLR10 (ENSPCIG00000032085)	TLR6 (ENSPCIG00000019462)	FAM114A1 (ENSPCIG00000011041) #32	ENSPCIG00000011045 #33
Wallaby	MODERN SPECIES	7823																PCDH7 (ENSMEUG00000008422) #22
Tasmanian devil	MODERN SPECIES	5	ZCCHC4 (ENSSHAG00000004438) #11	ANAPC4 (ENSSHAG00000003402)	ENSSHAG00000010251 #13	ENSSHAG00000004649 #13	ENSSHAG00000010890 #13	ENSSHAG00000031795 #13	ENSSHAG00000028205 #13	ENSSHAG00000023004 #13	SEL1L3 (ENSSHAG00000009419) #14	ENSSHAG00000030717 #15	RBPJ (ENSSHAG00000003329) #16	CCKAR (ENSSHAG00000000403) #17	TBC1D19 (ENSSHAG00000009955) #18	STIM2 (ENSSHAG00000008249) #20	ENSSHAG00000023484	PCDH7 (ENSSHAG00000010841) #22	ENSSHAG00000030937	ENSSHAG00000020576	ARAP2 (ENSSHAG00000011185) #24	DTHD1 (ENSSHAG00000010416) #25	NWD2 (ENSSHAG00000005236) #26	ENSSHAG00000002940 #27	RELL1 (ENSSHAG00000023710) #28	PGM2 (ENSSHAG00000005459) #29	TBC1D1 (ENSSHAG00000013165) #30	KLF3 (ENSSHAG00000026965) #31	TLR10 (ENSSHAG00000010643)	TLR6 (ENSSHAG00000010462)	FAM114A1 (ENSSHAG00000009933) #32	ENSSHAG00000009519 #33	KLHL5 (ENSSHAG00000008601) #34
Platypus	MODERN SPECIES	9	ENSOANG00000038598	CCDC149 (ENSOANG00000006683) #7	LGI2 (ENSOANG00000041994) #8	SEPSECS (ENSOANG00000045251) #9	PI4K2B (ENSOANG00000006681) #10	ZCCHC4 (ENSOANG00000006688) #11	ANAPC4 (ENSOANG00000006689)	SLC34A2 (ENSOANG00000006695) #13	SEL1L3 (ENSOANG00000006697) #14	ENSOANG00000037572 #15	RBPJ (ENSOANG00000006699) #16	CCKAR (ENSOANG00000029819) #17	TBC1D19 (ENSOANG00000006700) #18	STIM2 (ENSOANG00000006701) #20	ENSOANG00000039040	PCDH7 (ENSOANG00000036095) #22	ARAP2 (ENSOANG00000010310) #24	NWD2 (ENSOANG00000010313) #26	RELL1 (ENSOANG00000010314) #28	PGM2 (ENSOANG00000010315) #29	TBC1D1 (ENSOANG00000010316) #30	KLF3 (ENSOANG00000047136) #31	ENSOANG00000047464	ENSOANG00000050732	FAM114A1 (ENSOANG00000010319) #32	ENSOANG00000010321 #33	KLHL5 (ENSOANG00000010322) #34	ENSOANG00000010323 #35	WDR19 (ENSOANG00000010327) #35	ENSOANG00000010330 #36	ENSOANG00000038908 #36
Sauria	DUPLICATION
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Aves	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Flycatcher	MODERN SPECIES	22	SOD3 (ENSFALG00000014662)	CCDC149 (ENSFALG00000009207) #7	LGI2 (ENSFALG00000024523) #8	SEPSECS (ENSFALG00000009193) #9	PI4K2B (ENSFALG00000009183) #10	ANAPC4 (ENSFALG00000009180)	ENSFALG00000009167 ##13	SEL1L3 (ENSFALG00000009157) #14	SMIM20 (ENSFALG00000009156) #15	RBPJ (ENSFALG00000028202) #16	CCKAR (ENSFALG00000009150) #17	TBC1D19 (ENSFALG00000009147) #18	STIM2 (ENSFALG00000009145) #20	ENSFALG00000024970	PCDH7 (ENSFALG00000009140) #22	ENSFALG00000028447 #22	ENSFALG00000009389	ARAP2 (ENSFALG00000009360) #24	NWD2 (ENSFALG00000009352) #26	ENSFALG00000026554 #27	RELL1 (ENSFALG00000026363) #28	PGM2 (ENSFALG00000009335) #29	TBC1D1 (ENSFALG00000009329) #30	KLF3 (ENSFALG00000023461) #31	ENSFALG00000014902	ENSFALG00000014882	FAM114A1 (ENSFALG00000009324) #32	TMEM156 (ENSFALG00000009322) #33	KLHL5 (ENSFALG00000009318) #34	WDR19 (ENSFALG00000009308) #35	RFC1 (ENSFALG00000009271) #36
Cryptodira	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Abingdon island giant tortoise	MODERN SPECIES	783																ENSCABG00000006637 #22	ENSCABG00000006639
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Episquamata	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000157221.q.a #22
Blue-lipped sea krait	MODERN SPECIES	3665																ENSLLTG00000001795 #22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000157221.q.b #22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000157221.q.b #22
Episquamata	ANCESTRAL SPECIES																	ENSGT00940000157221.q.b #22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000157221.q.b #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000157221.q.b #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000157221.q.b #22
Blue-lipped sea krait	MODERN SPECIES	1465																ENSLLTG00000012592 #22
Indian cobra	MODERN SPECIES	2	ENSNNAG00000004186	ENSNNAG00000004195	HMGCS2 (ENSNNAG00000004218)	PHGDH (ENSNNAG00000004258)	ENSNNAG00000004334	PRKAB2 (ENSNNAG00000004404)	ENSNNAG00000004473	FAM78B (ENSNNAG00000004480)	TMCO1 (ENSNNAG00000004505)	ALDH9A1 (ENSNNAG00000004535)	ENSNNAG00000004562	CRIP2 (ENSNNAG00000004578)	SEC22B (ENSNNAG00000004603)	ALOX5 (ENSNNAG00000004631)	ENSNNAG00000004709	ENSNNAG00000004728 #22	ENSNNAG00000004749	ENSNNAG00000004767	POLR3F (ENSNNAG00000004799)	KAT14 (ENSNNAG00000004811)	ENSNNAG00000004827	MARCHF8 (ENSNNAG00000004839)	HDAC3 (ENSNNAG00000004859)	ENSNNAG00000004978	ENSNNAG00000004996	ENSNNAG00000005024	DIAPH1 (ENSNNAG00000005267)	PCDHGC3 (ENSNNAG00000007172)	ENSNNAG00000007216	PCDHGC5 (ENSNNAG00000007229)	ENSNNAG00000007246
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00940000177623	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Aves	ANCESTRAL SPECIES	3	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Neognathae	ANCESTRAL SPECIES	5	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Pink-footed goose	MODERN SPECIES	40													TBC1D19 (ENSABRG00000013419) #18	STIM2 (ENSABRG00000013410) #20	ENSABRG00000013392	PCDH7 (ENSABRG00000013386) #22	ENSABRG00000013346	ARAP2 (ENSABRG00000013320) #24	DTHD1 (ENSABRG00000013299) #25	NWD2 (ENSABRG00000013285) #26	C4orf19 (ENSABRG00000013275) #27	RELL1 (ENSABRG00000013270) #28	PGM2 (ENSABRG00000013260) #29	TBC1D1 (ENSABRG00000013249) #30	KLF3 (ENSABRG00000013246) #31	TLR6 (ENSABRG00000013218)	FAM114A1 (ENSABRG00000013196) #32	KLHL5 (ENSABRG00000013179) #34	RFC1 (ENSABRG00000011757) #36	KLB (ENSABRG00000011642) #37	RPL9 (ENSABRG00000011568)
Duck	MODERN SPECIES	22	SEPSECS (ENSAPLG00000009962) #9	PI4K2B (ENSAPLG00000009723) #10	ZCCHC4 (ENSAPLG00000009717) #11	ENSAPLG00000016667	ENSAPLG00000008254 ##13	SEL1L3 (ENSAPLG00000007928) #14	SMIM20 (ENSAPLG00000026829) #15	RBPJ (ENSAPLG00000007512) #16	ENSAPLG00000020697	CCKAR (ENSAPLG00000025740) #17	TBC1D19 (ENSAPLG00000007019) #18	STIM2 (ENSAPLG00000006859) #20	ENSAPLG00000024292	ENSAPLG00000026215	ENSAPLG00000030723	PCDH7 (ENSAPLG00000027438) #22	ARAP2 (ENSAPLG00000013894) #24	DTHD1 (ENSAPLG00000014119) #25	NWD2 (ENSAPLG00000004933) #26	C4orf19 (ENSAPLG00000027520) #27	RELL1 (ENSAPLG00000008800) #28	PGM2 (ENSAPLG00000008271) #29	TBC1D1 (ENSAPLG00000007546) #30	KLF3 (ENSAPLG00000007495) #31	TLR6 (ENSAPLG00000002049)	FAM114A1 (ENSAPLG00000007063) #32	ENSAPLG00000007444 #33	KLHL5 (ENSAPLG00000007450) #34	WDR19 (ENSAPLG00000010193) #35	RFC1 (ENSAPLG00000010594) #36	KLB (ENSAPLG00000011369) #37
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Japanese quail	MODERN SPECIES	22	SOD3 (ENSCJPG00005018375)	CCDC149 (ENSCJPG00005018374) #7	LGI2 (ENSCJPG00005018373) #8	ENSCJPG00005018372	SEPSECS (ENSCJPG00005018371) #9	PI4K2B (ENSCJPG00005018370) #10	ZCCHC4 (ENSCJPG00005018369) #11	ANAPC4 (ENSCJPG00005018368)	ENSCJPG00005018366 ##13	SEL1L3 (ENSCJPG00005018359) #14	SMIM20 (ENSCJPG00005018355) #15	RBPJ (ENSCJPG00005018352) #16	CCKAR (ENSCJPG00005018351) #17	TBC1D19 (ENSCJPG00005018350) #18	STIM2 (ENSCJPG00005018349) #20	PCDH7 (ENSCJPG00005018339) #22	ARAP2 (ENSCJPG00005018329) #24	DTHD1 (ENSCJPG00005018328) #25	NWD2 (ENSCJPG00005018327) #26	C4orf19 (ENSCJPG00005018326) #27	RELL1 (ENSCJPG00005018325) #28	PGM2 (ENSCJPG00005018323) #29	TBC1D1 (ENSCJPG00005018321) #30	KLF3 (ENSCJPG00005018317) #31	TLR6 (ENSCJPG00005018284)	FAM114A1 (ENSCJPG00005018282) #32	KLHL5 (ENSCJPG00005018217) #34	WDR19 (ENSCJPG00005018016) #35	RFC1 (ENSCJPG00005017842) #36	KLB (ENSCJPG00005017841) #37	RPL9 (ENSCJPG00005017840)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35
Chicken	MODERN SPECIES	33	SOD3 (ENSGALG00010009833)	CCDC149 (ENSGALG00010009728) #7	LGI2 (ENSGALG00010010178) #8	ENSGALG00010010175	SEPSECS (ENSGALG00010010161) #9	PI4K2B (ENSGALG00010010945) #10	ZCCHC4 (ENSGALG00010010939) #11	ANAPC4 (ENSGALG00010010933)	SLC34A2 (ENSGALG00010010900) ##13	SEL1L3 (ENSGALG00010010857) #14	SMIM20 (ENSGALG00010010853) #15	RBPJ (ENSGALG00010010837) #16	CCKAR (ENSGALG00010010732) #17	TBC1D19 (ENSGALG00010010722) #18	STIM2 (ENSGALG00010010685) #20	PCDH7 (ENSGALG00010009266) #22	ENSGALG00010011667	ENSGALG00010014270	ARAP2 (ENSGALG00010014705) #24	DTHD1 (ENSGALG00010014681) #25	NWD2 (ENSGALG00010014632) #26	C4orf19 (ENSGALG00010014455) #27	RELL1 (ENSGALG00010015353) #28	PGM2 (ENSGALG00010015310) #29	TBC1D1 (ENSGALG00010015200) #30	KLF3 (ENSGALG00010015165) #31	TLR1A (ENSGALG00010015119)	TLR1B (ENSGALG00010017530)	FAM114A1 (ENSGALG00010015039) #32	ENSGALG00010014953 #33	KLHL5 (ENSGALG00010013550) #34
Turkey	MODERN SPECIES	24	DHX15 (ENSMGAG00000012477)	SOD3 (ENSMGAG00000012473)	CCDC149 (ENSMGAG00000012469) #7	LGI2 (ENSMGAG00000012466) #8	SEPSECS (ENSMGAG00000012465) #9	PI4K2B (ENSMGAG00000012457) #10	ZCCHC4 (ENSMGAG00000012455) #11	ANAPC4 (ENSMGAG00000012445)	ENSMGAG00000012440 ##13	SEL1L3 (ENSMGAG00000012431) #14	SMIM20 (ENSMGAG00000018966) #15	RBPJ (ENSMGAG00000012418) #16	CCKAR (ENSMGAG00000012415) #17	TBC1D19 (ENSMGAG00000012405) #18	STIM2 (ENSMGAG00000012398) #20	PCDH7 (ENSMGAG00000010521) #22	ARAP2 (ENSMGAG00000012390) #24	DTHD1 (ENSMGAG00000012392) #25	ENSMGAG00000017111	NWD2 (ENSMGAG00000012386) #26	C4orf19 (ENSMGAG00000012379) #27	RELL1 (ENSMGAG00000012380) #28	PGM2 (ENSMGAG00000012371) #29	TBC1D1 (ENSMGAG00000012368) #30	KLF3 (ENSMGAG00000012365) #31	ENSMGAG00000020268	ENSMGAG00000015741	FAM114A1 (ENSMGAG00000012355) #32	ENSMGAG00000012350 #33	KLHL5 (ENSMGAG00000012338) #34	WDR19 (ENSMGAG00000012329) #35
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Great tit	MODERN SPECIES	23	DHX15 (ENSPMJG00000016312)	SOD3 (ENSPMJG00000016311)	CCDC149 (ENSPMJG00000016310) #7	LGI2 (ENSPMJG00000016309) #8	PI4K2B (ENSPMJG00000016308) #10	ZCCHC4 (ENSPMJG00000016307) #11	ANAPC4 (ENSPMJG00000016306)	ENSPMJG00000016305 ##13	SEL1L3 (ENSPMJG00000016304) #14	SMIM20 (ENSPMJG00000016303) #15	RBPJ (ENSPMJG00000016301) #16	CCKAR (ENSPMJG00000016300) #17	TBC1D19 (ENSPMJG00000016299) #18	STIM2 (ENSPMJG00000016298) #20	ENSPMJG00000016294	PCDH7 (ENSPMJG00000016293) #22	ARAP2 (ENSPMJG00000016289) #24	NWD2 (ENSPMJG00000016287) #26	C4orf19 (ENSPMJG00000016285) #27	RELL1 (ENSPMJG00000016284) #28	PGM2 (ENSPMJG00000016283) #29	TBC1D1 (ENSPMJG00000016282) #30	KLF3 (ENSPMJG00000016275) #31	ENSPMJG00000016274	ENSPMJG00000016273	FAM114A1 (ENSPMJG00000016272) #32	TMEM156 (ENSPMJG00000016271) #33	KLHL5 (ENSPMJG00000016219) #34	WDR19 (ENSPMJG00000016218) #35	RFC1 (ENSPMJG00000015645) #36	KLB (ENSPMJG00000015644) #37
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Flycatcher	MODERN SPECIES	22	DHX15 (ENSFALG00000009210)	SOD3 (ENSFALG00000014662)	CCDC149 (ENSFALG00000009207) #7	LGI2 (ENSFALG00000024523) #8	SEPSECS (ENSFALG00000009193) #9	PI4K2B (ENSFALG00000009183) #10	ANAPC4 (ENSFALG00000009180)	ENSFALG00000009167 ##13	SEL1L3 (ENSFALG00000009157) #14	SMIM20 (ENSFALG00000009156) #15	RBPJ (ENSFALG00000028202) #16	CCKAR (ENSFALG00000009150) #17	TBC1D19 (ENSFALG00000009147) #18	STIM2 (ENSFALG00000009145) #20	ENSFALG00000024970	PCDH7 (ENSFALG00000009140) #22	ENSFALG00000028447 #22	ENSFALG00000009389	ARAP2 (ENSFALG00000009360) #24	NWD2 (ENSFALG00000009352) #26	ENSFALG00000026554 #27	RELL1 (ENSFALG00000026363) #28	PGM2 (ENSFALG00000009335) #29	TBC1D1 (ENSFALG00000009329) #30	KLF3 (ENSFALG00000023461) #31	ENSFALG00000014902	ENSFALG00000014882	FAM114A1 (ENSFALG00000009324) #32	TMEM156 (ENSFALG00000009322) #33	KLHL5 (ENSFALG00000009318) #34	WDR19 (ENSFALG00000009308) #35
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Zebra finch	MODERN SPECIES	25	SOD3 (ENSTGUG00000009451)	CCDC149 (ENSTGUG00000009438) #7	LGI2 (ENSTGUG00000021263) #8	SEPSECS (ENSTGUG00000009417) #9	PI4K2B (ENSTGUG00000009404) #10	ZCCHC4 (ENSTGUG00000009397) #11	ANAPC4 (ENSTGUG00000009328)	ENSTGUG00000009289 ##13	SEL1L3 (ENSTGUG00000009265) #14	SMIM20 (ENSTGUG00000009263) #15	RBPJ (ENSTGUG00000009245) #16	CCKAR (ENSTGUG00000009230) #17	TBC1D19 (ENSTGUG00000009193) #18	STIM2 (ENSTGUG00000009177) #20	ENSTGUG00000025253	PCDH7 (ENSTGUG00000009172) #22	ENSTGUG00000028708	ARAP2 (ENSTGUG00000009152) #24	DTHD1 (ENSTGUG00000009149) #25	NWD2 (ENSTGUG00000009144) #26	C4orf19 (ENSTGUG00000020799) #27	RELL1 (ENSTGUG00000009141) #28	PGM2 (ENSTGUG00000009108) #29	TBC1D1 (ENSTGUG00000009056) #30	KLF3 (ENSTGUG00000009046) #31	ENSTGUG00000027436	ENSTGUG00000009041	ENSTGUG00000009027	TMEM156 (ENSTGUG00000009023) #33	KLHL5 (ENSTGUG00000008989) #34	WDR19 (ENSTGUG00000008961) #35
Common canary	MODERN SPECIES	2	SOD3 (ENSSCAG00000004707)	CCDC149 (ENSSCAG00000004710) #7	LGI2 (ENSSCAG00000004718) #8	SEPSECS (ENSSCAG00000004722) #9	PI4K2B (ENSSCAG00000004729) #10	ZCCHC4 (ENSSCAG00000004739) #11	ANAPC4 (ENSSCAG00000004765)	ENSSCAG00000004791 ##13	SEL1L3 (ENSSCAG00000004798) #14	SMIM20 (ENSSCAG00000004809) #15	RBPJ (ENSSCAG00000004817) #16	CCKAR (ENSSCAG00000004827) #17	TBC1D19 (ENSSCAG00000004860) #18	STIM2 (ENSSCAG00000004950) #20	ENSSCAG00000005042	PCDH7 (ENSSCAG00000005046) #22	ARAP2 (ENSSCAG00000005112) #24	DTHD1 (ENSSCAG00000005246) #25	ENSSCAG00000005268	ENSSCAG00000005284	NWD2 (ENSSCAG00000005289) #26	C4orf19 (ENSSCAG00000005294) #27	RELL1 (ENSSCAG00000005297) #28	PGM2 (ENSSCAG00000005299) #29	TBC1D1 (ENSSCAG00000005305) #30	KLF3 (ENSSCAG00000005339) #31	TLR6 (ENSSCAG00000005343)	FAM114A1 (ENSSCAG00000005347) #32	TMEM156 (ENSSCAG00000005357) #33	KLHL5 (ENSSCAG00000005362) #34	WDR19 (ENSSCAG00000005365) #35
Medium ground finch	MODERN SPECIES		DHX15 (ENSGFOG00000001405)	SOD3 (ENSGFOG00000001424)	CCDC149 (ENSGFOG00000001434) #7	LGI2 (ENSGFOG00000001453) #8	SEPSECS (ENSGFOG00000001468) #9	PI4K2B (ENSGFOG00000001541) #10	ZCCHC4 (ENSGFOG00000001560) #11	ANAPC4 (ENSGFOG00000001587)	ENSGFOG00000001618 ##13	SEL1L3 (ENSGFOG00000001635) #14	ENSGFOG00000001653	RBPJ (ENSGFOG00000001663) #16	CCKAR (ENSGFOG00000001670) #17	TBC1D19 (ENSGFOG00000001691) #18	STIM2 (ENSGFOG00000001728) #20	PCDH7 (ENSGFOG00000001767) #22	ARAP2 (ENSGFOG00000001784) #24	NWD2 (ENSGFOG00000001843) #26	ENSGFOG00000001851 #27	RELL1 (ENSGFOG00000001863) #28	PGM2 (ENSGFOG00000001868) #29	TBC1D1 (ENSGFOG00000001882) #30	KLF3 (ENSGFOG00000001925) #31	ENSGFOG00000001932	ENSGFOG00000001940	ENSGFOG00000001947	KLHL5 (ENSGFOG00000001967) #34	WDR19 (ENSGFOG00000001985) #35	RFC1 (ENSGFOG00000002022) #36	KLB (ENSGFOG00000002065) #37	ENSGFOG00000002100
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.j	ENSGT00940000162201.i	ENSGT00990000210295	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES		CCDC149 (ENSACCG00020000204) #7	LGI2 (ENSACCG00020000205) #8	SEPSECS (ENSACCG00020000206) #9	PI4K2B (ENSACCG00020000207) #10	ZCCHC4 (ENSACCG00020000208) #11	ANAPC4 (ENSACCG00020000209)	ENSACCG00020000210 ##13	SEL1L3 (ENSACCG00020000211) #14	SMIM20 (ENSACCG00020000212) #15	RBPJ (ENSACCG00020000213) #16	CCKAR (ENSACCG00020000214) #17	TBC1D19 (ENSACCG00020000215) #18	STIM2 (ENSACCG00020000216) #20	ENSACCG00020000217	ENSACCG00020000218 #22	ENSACCG00020000219 #22	ARAP2 (ENSACCG00020000221) #24	DTHD1 (ENSACCG00020000222) #25	NWD2 (ENSACCG00020000223) #26	C4orf19 (ENSACCG00020000224) #27	RELL1 (ENSACCG00020000225) #28	PGM2 (ENSACCG00020000226) #29	TBC1D1 (ENSACCG00020000227) #30	KLF3 (ENSACCG00020000228) #31	ENSACCG00020000229	ENSACCG00020000230	ENSACCG00020000231	KLHL5 (ENSACCG00020000232) #34	WDR19 (ENSACCG00020000233) #35	RFC1 (ENSACCG00020000234) #36	KLB (ENSACCG00020000235) #37
Golden eagle	MODERN SPECIES		SOD3 (ENSACCG00020000203)	CCDC149 (ENSACCG00020000204) #7	LGI2 (ENSACCG00020000205) #8	SEPSECS (ENSACCG00020000206) #9	PI4K2B (ENSACCG00020000207) #10	ZCCHC4 (ENSACCG00020000208) #11	ANAPC4 (ENSACCG00020000209)	ENSACCG00020000210 ##13	SEL1L3 (ENSACCG00020000211) #14	SMIM20 (ENSACCG00020000212) #15	RBPJ (ENSACCG00020000213) #16	CCKAR (ENSACCG00020000214) #17	TBC1D19 (ENSACCG00020000215) #18	STIM2 (ENSACCG00020000216) #20	ENSACCG00020000217	ENSACCG00020000218 #22	ENSACCG00020000219 #22	ARAP2 (ENSACCG00020000221) #24	DTHD1 (ENSACCG00020000222) #25	NWD2 (ENSACCG00020000223) #26	C4orf19 (ENSACCG00020000224) #27	RELL1 (ENSACCG00020000225) #28	PGM2 (ENSACCG00020000226) #29	TBC1D1 (ENSACCG00020000227) #30	KLF3 (ENSACCG00020000228) #31	ENSACCG00020000229	ENSACCG00020000230	ENSACCG00020000231	KLHL5 (ENSACCG00020000232) #34	WDR19 (ENSACCG00020000233) #35	RFC1 (ENSACCG00020000234) #36
Kakapo	MODERN SPECIES	24	LGI2 (ENSSHBG00005017808) #8	SEPSECS (ENSSHBG00005017996) #9	PI4K2B (ENSSHBG00005018001) #10	ZCCHC4 (ENSSHBG00005018004) #11	ENSSHBG00005018011	ENSSHBG00005018018	ENSSHBG00005018026 ##13	SEL1L3 (ENSSHBG00005018031) #14	ENSSHBG00005018035 #15	ENSSHBG00005018043	RBPJ (ENSSHBG00005018048) #16	CCKAR (ENSSHBG00005018052) #17	TBC1D19 (ENSSHBG00005018056) #18	STIM2 (ENSSHBG00005018062) #20	ENSSHBG00005018070	PCDH7 (ENSSHBG00005018087) #22	DTHD1 (ENSSHBG00005018104) #25	NWD2 (ENSSHBG00005018109) #26	C4orf19 (ENSSHBG00005018114) #27	RELL1 (ENSSHBG00005018119) #28	PGM2 (ENSSHBG00005018123) #29	TBC1D1 (ENSSHBG00005018155) #30	KLF3 (ENSSHBG00005018273) #31	TLR6 (ENSSHBG00005000935)	ENSSHBG00005000955	ENSSHBG00005000963 #33	KLHL5 (ENSSHBG00005000966) #34	WDR19 (ENSSHBG00005008826) #35	RFC1 (ENSSHBG00005008858) #36	KLB (ENSSHBG00005008873) #37	RPL9 (ENSSHBG00005008889)
African ostrich	MODERN SPECIES	548	PPARGC1A (ENSSCUG00000006459)	DHX15 (ENSSCUG00000006468)	SOD3 (ENSSCUG00000006470)	CCDC149 (ENSSCUG00000006474) #7	LGI2 (ENSSCUG00000006480) #8	SEPSECS (ENSSCUG00000006488) #9	PI4K2B (ENSSCUG00000006495) #10	ZCCHC4 (ENSSCUG00000006498) #11	ANAPC4 (ENSSCUG00000006515)	ENSSCUG00000006534 ##13	SEL1L3 (ENSSCUG00000006536) #14	RBPJ (ENSSCUG00000006539) #16	CCKAR (ENSSCUG00000006541) #17	TBC1D19 (ENSSCUG00000006542) #18	STIM2 (ENSSCUG00000006544) #20	PCDH7 (ENSSCUG00000006563) #22	ENSSCUG00000006572	ARAP2 (ENSSCUG00000006577) #24	DTHD1 (ENSSCUG00000006590) #25	NWD2 (ENSSCUG00000006593) #26	C4orf19 (ENSSCUG00000006603) #27	RELL1 (ENSSCUG00000006607) #28	PGM2 (ENSSCUG00000006613) #29	TBC1D1 (ENSSCUG00000006618) #30	KLF3 (ENSSCUG00000006627) #31	ENSSCUG00000006629	FAM114A1 (ENSSCUG00000006635) #32	TMEM156 (ENSSCUG00000006640) #33	KLHL5 (ENSSCUG00000006644) #34	WDR19 (ENSSCUG00000006647) #35	RFC1 (ENSSCUG00000006668) #36
Australian saltwater crocodile	MODERN SPECIES	65	DHX15 (ENSCPRG00005004902)	SOD3 (ENSCPRG00005004903)	CCDC149 (ENSCPRG00005004911) #7	LGI2 (ENSCPRG00005004932) #8	SEPSECS (ENSCPRG00005004978) #9	PI4K2B (ENSCPRG00005004981) #10	ZCCHC4 (ENSCPRG00005004986) #11	ANAPC4 (ENSCPRG00005005005)	ENSCPRG00005005064 ##13	SEL1L3 (ENSCPRG00005005084) #14	SMIM20 (ENSCPRG00005005197) #15	RBPJ (ENSCPRG00005005213) #16	CCKAR (ENSCPRG00005005217) #17	TBC1D19 (ENSCPRG00005005240) #18	STIM2 (ENSCPRG00005005298) #20	PCDH7 (ENSCPRG00005005388) #22	RPS29 (ENSCPRG00005005404)	ENSCPRG00005005412	TIMM17B (ENSCPRG00005005430)	ARAP2 (ENSCPRG00005005447) #24	DTHD1 (ENSCPRG00005005494) #25	NWD2 (ENSCPRG00005005535) #26	C4orf19 (ENSCPRG00005005560) #27	RELL1 (ENSCPRG00005005574) #28	PGM2 (ENSCPRG00005005602) #29	TBC1D1 (ENSCPRG00005005626) #30	KLF3 (ENSCPRG00005005693) #31	FAM114A1 (ENSCPRG00005005748) #32	TLR6 (ENSCPRG00005005749)	ENSCPRG00005005754	ENSCPRG00005005755
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.l	ENSGT00940000162201.k	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	2222	LGI2 (ENSPSIG00000014639) #8	SEPSECS (ENSPSIG00000014906) #9	PI4K2B (ENSPSIG00000015479) #10	ZCCHC4 (ENSPSIG00000015625) #11	ANAPC4 (ENSPSIG00000015647)	ENSPSIG00000016305 ##13	ENSPSIG00000016641 #14	ENSPSIG00000016650 #14	ENSPSIG00000000844	SMIM20 (ENSPSIG00000016781) #15	RBPJ (ENSPSIG00000016822) #16	CCKAR (ENSPSIG00000016827) #17	TBC1D19 (ENSPSIG00000017104) #18	STIM2 (ENSPSIG00000017515) #20	ENSPSIG00000000850	ENSPSIG00000006788 #22	ENSPSIG00000000857 #22	ENSPSIG00000006830	ABCG8 (ENSPSIG00000007213)	ABCG5 (ENSPSIG00000010209)	DYNC2LI1 (ENSPSIG00000010815)	PLEKHH2 (ENSPSIG00000011173)	THADA (ENSPSIG00000011388)	ENSPSIG00000017136
Chinese turtle	MODERN SPECIES	2222	SEPSECS (ENSPSIG00000014906) #9	PI4K2B (ENSPSIG00000015479) #10	ZCCHC4 (ENSPSIG00000015625) #11	ANAPC4 (ENSPSIG00000015647)	ENSPSIG00000016305 ##13	ENSPSIG00000016641 #14	ENSPSIG00000016650 #14	ENSPSIG00000000844	SMIM20 (ENSPSIG00000016781) #15	RBPJ (ENSPSIG00000016822) #16	CCKAR (ENSPSIG00000016827) #17	TBC1D19 (ENSPSIG00000017104) #18	STIM2 (ENSPSIG00000017515) #20	ENSPSIG00000000850	ENSPSIG00000006788 #22	ENSPSIG00000000857 #22	ENSPSIG00000006830	ABCG8 (ENSPSIG00000007213)	ABCG5 (ENSPSIG00000010209)	DYNC2LI1 (ENSPSIG00000010815)	PLEKHH2 (ENSPSIG00000011173)	THADA (ENSPSIG00000011388)	ENSPSIG00000017136
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.l	ENSGT00940000162201.k	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.l	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	26	CCDC149 (ENSTMTG00000002431) #7	LGI2 (ENSTMTG00000002426) #8	SEPSECS (ENSTMTG00000002424) #9	PI4K2B (ENSTMTG00000002417) #10	ZCCHC4 (ENSTMTG00000002410) #11	ANAPC4 (ENSTMTG00000002376)	ENSTMTG00000002359 ##13	SEL1L3 (ENSTMTG00000002230) #14	ENSTMTG00000002188	RBPJ (ENSTMTG00000002176) #16	CCKAR (ENSTMTG00000002168) #17	TBC1D19 (ENSTMTG00000002117) #18	STIM2 (ENSTMTG00000002059) #20	ENSTMTG00000002043	ENSTMTG00000002037 #22	ENSTMTG00000002030 #22	ENSTMTG00000002023	ENSTMTG00000002014	ENSTMTG00000002010	ARAP2 (ENSTMTG00000001989) #24	DTHD1 (ENSTMTG00000001942) #25	ENSTMTG00000001921	NWD2 (ENSTMTG00000001912) #26	C4orf19 (ENSTMTG00000001898) #27	RELL1 (ENSTMTG00000001889) #28	PGM2 (ENSTMTG00000001870) #29	TBC1D1 (ENSTMTG00000001188) #30	KLF3 (ENSTMTG00000001006) #31	ENSTMTG00000000993	FAM114A1 (ENSTMTG00000000977) #32	TMEM156 (ENSTMTG00000000960) #33
Three-toed box turtle	MODERN SPECIES	26	SOD3 (ENSTMTG00000002436)	CCDC149 (ENSTMTG00000002431) #7	LGI2 (ENSTMTG00000002426) #8	SEPSECS (ENSTMTG00000002424) #9	PI4K2B (ENSTMTG00000002417) #10	ZCCHC4 (ENSTMTG00000002410) #11	ANAPC4 (ENSTMTG00000002376)	ENSTMTG00000002359 ##13	SEL1L3 (ENSTMTG00000002230) #14	ENSTMTG00000002188	RBPJ (ENSTMTG00000002176) #16	CCKAR (ENSTMTG00000002168) #17	TBC1D19 (ENSTMTG00000002117) #18	STIM2 (ENSTMTG00000002059) #20	ENSTMTG00000002043	ENSTMTG00000002037 #22	ENSTMTG00000002030 #22	ENSTMTG00000002023	ENSTMTG00000002014	ENSTMTG00000002010	ARAP2 (ENSTMTG00000001989) #24	DTHD1 (ENSTMTG00000001942) #25	ENSTMTG00000001921	NWD2 (ENSTMTG00000001912) #26	C4orf19 (ENSTMTG00000001898) #27	RELL1 (ENSTMTG00000001889) #28	PGM2 (ENSTMTG00000001870) #29	TBC1D1 (ENSTMTG00000001188) #30	KLF3 (ENSTMTG00000001006) #31	ENSTMTG00000000993	FAM114A1 (ENSTMTG00000000977) #32
painted turtle	MODERN SPECIES	15	CCDC149 (ENSCPBG00000027952) #7	LGI2 (ENSCPBG00000027955) #8	SEPSECS (ENSCPBG00000027958) #9	PI4K2B (ENSCPBG00000027959) #10	ZCCHC4 (ENSCPBG00000027961) #11	ANAPC4 (ENSCPBG00000027964)	ENSCPBG00000027967 ##13	SEL1L3 (ENSCPBG00000027969) #14	SMIM20 (ENSCPBG00000027970) #15	RBPJ (ENSCPBG00000027973) #16	CCKAR (ENSCPBG00000027976) #17	TBC1D19 (ENSCPBG00000027982) #18	STIM2 (ENSCPBG00000027991) #20	ENSCPBG00000027993	ENSCPBG00000027995	PCDH7 (ENSCPBG00000028002) #22	ENSCPBG00000028004	ANO5 (ENSCPBG00000028008)	ENSCPBG00000028010	SLC17A6 (ENSCPBG00000028011)	FANCF (ENSCPBG00000028012)	GAS2 (ENSCPBG00000028013)	LUZP2 (ENSCPBG00000028015)	ANO3 (ENSCPBG00000028019)	MUC15 (ENSCPBG00000028023)	SLC5A12 (ENSCPBG00000028025)	FIBIN (ENSCPBG00000028026)	BBOX1 (ENSCPBG00000028028)	ENSCPBG00000028029	C10orf90 (ENSCPBG00000028031)	ADAM12 (ENSCPBG00000028042)
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00550000074828.a.b	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000165320	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.l	ENSGT00940000162201.k	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	19	CCDC149 (ENSGEVG00005017958) #7	LGI2 (ENSGEVG00005017978) #8	SEPSECS (ENSGEVG00005018007) #9	PI4K2B (ENSGEVG00005018044) #10	ZCCHC4 (ENSGEVG00005018084) #11	ANAPC4 (ENSGEVG00005018145)	ENSGEVG00005018253 ##13	SEL1L3 (ENSGEVG00005018390) #14	SMIM20 (ENSGEVG00005018677) #15	RBPJ (ENSGEVG00005018699) #16	CCKAR (ENSGEVG00005018734) #17	TBC1D19 (ENSGEVG00005018764) #18	STIM2 (ENSGEVG00005018809) #20	ENSGEVG00005018826	ENSGEVG00005018842	ENSGEVG00005018852 #22	ENSGEVG00005018865 #22	ARAP2 (ENSGEVG00005018912) #24	DTHD1 (ENSGEVG00005019031) #25	ENSGEVG00005004128	NWD2 (ENSGEVG00005004151) #26	C4orf19 (ENSGEVG00005004186) #27	RELL1 (ENSGEVG00005004232) #28	PGM2 (ENSGEVG00005004263) #29	ENSGEVG00005004286	ENSGEVG00005004292 #30	KLF3 (ENSGEVG00005004313) #31	ENSGEVG00005004326	ENSGEVG00005004340	FAM114A1 (ENSGEVG00005004364) #32	TMEM156 (ENSGEVG00005004417) #33
Goode s thornscrub tortoise	MODERN SPECIES	19	LGI2 (ENSGEVG00005017978) #8	SEPSECS (ENSGEVG00005018007) #9	PI4K2B (ENSGEVG00005018044) #10	ZCCHC4 (ENSGEVG00005018084) #11	ANAPC4 (ENSGEVG00005018145)	ENSGEVG00005018253 ##13	SEL1L3 (ENSGEVG00005018390) #14	SMIM20 (ENSGEVG00005018677) #15	RBPJ (ENSGEVG00005018699) #16	CCKAR (ENSGEVG00005018734) #17	TBC1D19 (ENSGEVG00005018764) #18	STIM2 (ENSGEVG00005018809) #20	ENSGEVG00005018826	ENSGEVG00005018842	ENSGEVG00005018852 #22	ENSGEVG00005018865 #22	ARAP2 (ENSGEVG00005018912) #24	DTHD1 (ENSGEVG00005019031) #25	ENSGEVG00005004128	NWD2 (ENSGEVG00005004151) #26	C4orf19 (ENSGEVG00005004186) #27	RELL1 (ENSGEVG00005004232) #28	PGM2 (ENSGEVG00005004263) #29	ENSGEVG00005004286	ENSGEVG00005004292 #30	KLF3 (ENSGEVG00005004313) #31	ENSGEVG00005004326	ENSGEVG00005004340	FAM114A1 (ENSGEVG00005004364) #32	TMEM156 (ENSGEVG00005004417) #33	KLHL5 (ENSGEVG00005004440) #34
Abingdon island giant tortoise	MODERN SPECIES	899																PCDH7 (ENSCABG00000018381) #22
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00390000017929 #33	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37	ENSGT00390000015224.d.l
Laterata	ANCESTRAL SPECIES	21	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT01030000234945	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37
Common wall lizard	MODERN SPECIES	17	ENSPMRG00000012728	SEPSECS (ENSPMRG00000012735) #9	PI4K2B (ENSPMRG00000012743) #10	ZCCHC4 (ENSPMRG00000012751) #11	ANAPC4 (ENSPMRG00000012834)	ENSPMRG00000013386	ENSPMRG00000013390 ##13	SEL1L3 (ENSPMRG00000013412) #14	ENSPMRG00000013495	ENSPMRG00000013498	RBPJ (ENSPMRG00000013511) #16	CCKAR (ENSPMRG00000013536) #17	TBC1D19 (ENSPMRG00000013570) #18	STIM2 (ENSPMRG00000013643) #20	ENSPMRG00000013648	PCDH7 (ENSPMRG00000013653) #22	ENSPMRG00000013659	ENSPMRG00000013663	ENSPMRG00000013667	ENSPMRG00000013671	ARAP2 (ENSPMRG00000013685) #24	ENSPMRG00000013752	DTHD1 (ENSPMRG00000013757) #25	ENSPMRG00000013760	ENSPMRG00000013775	ENSPMRG00000013784 #26	C4orf19 (ENSPMRG00000013793) #27	RELL1 (ENSPMRG00000013797) #28	ENSPMRG00000013801	PGM2 (ENSPMRG00000013805) #29	TBC1D1 (ENSPMRG00000013821) #30
Argentine black and white tegu	MODERN SPECIES	1	CCDC149 (ENSSMRG00000001694) #7	LGI2 (ENSSMRG00000001701) #8	SEPSECS (ENSSMRG00000001718) #9	PI4K2B (ENSSMRG00000001725) #10	ZCCHC4 (ENSSMRG00000001737) #11	ANAPC4 (ENSSMRG00000001814)	ENSSMRG00000001828 ##13	SEL1L3 (ENSSMRG00000001883) #14	SMIM20 (ENSSMRG00000001898) #15	RBPJ (ENSSMRG00000001903) #16	CCKAR (ENSSMRG00000001920) #17	TBC1D19 (ENSSMRG00000001948) #18	STIM2 (ENSSMRG00000001982) #20	ENSSMRG00000002078	ENSSMRG00000002157	PCDH7 (ENSSMRG00000002175) #22	ENSSMRG00000002180	ARAP2 (ENSSMRG00000002189) #24	DTHD1 (ENSSMRG00000002220) #25	NWD2 (ENSSMRG00000002231) #26	ENSSMRG00000002251 #27	RELL1 (ENSSMRG00000002260) #28	PGM2 (ENSSMRG00000002267) #29	TBC1D1 (ENSSMRG00000002348) #30	KLF3 (ENSSMRG00000002464) #31	ENSSMRG00000002469	N4BP2 (ENSSMRG00000002471)	PDS5A (ENSSMRG00000002567)	UBE2K (ENSSMRG00000002609)	SMIM14 (ENSSMRG00000002613)	UGDH (ENSSMRG00000002620)
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT01040000242873	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.c	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37	ENSGT00390000015224.d.l
Elapidae	ANCESTRAL SPECIES	22	ENSGT00940000158643	ENSGT00390000011192	ENSGT00940000162578	ENSGT00940000158757	ENSGT00390000003601.b	ENSGT00940000156043	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00940000177623	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.c	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37	ENSGT00390000015224.d.l
Elapidae_a	ANCESTRAL SPECIES	25	ENSGT00940000158643	ENSGT00390000011192.e	ENSGT00940000162578	ENSGT00940000158757	ENSGT00390000003601.b	ENSGT00940000156043	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00940000177623	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247.r #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.c	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37	ENSGT00390000015224.d.l
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000158643	ENSGT00390000011192.e	ENSGT00940000162578	ENSGT00940000158757	ENSGT00390000003601.b	ENSGT00940000156043	ENSGT00940000156021	ENSGT00940000155626	ENSGT00940000156710	ENSGT00940000177623	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221.r #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00390000013778 #27	ENSGT00940000159709 #28	ENSGT00940000156247.r #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.c	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37	ENSGT00390000015224.d.l
Mainland tiger snake	MODERN SPECIES	71															ENSNSUG00000015883	PCDH7 (ENSNSUG00000015884) #22	ARAP2 (ENSNSUG00000015887) #24	DTHD1 (ENSNSUG00000015939) #25	NWD2 (ENSNSUG00000015940) #26	ENSNSUG00000015941 #27	RELL1 (ENSNSUG00000015942) #28	PGM2 (ENSNSUG00000015943) #29	ENSNSUG00000015944	KLF3 (ENSNSUG00000015945) #31	ENSNSUG00000015952 #32	KLHL5 (ENSNSUG00000015953) #34	WDR19 (ENSNSUG00000016028) #35	RFC1 (ENSNSUG00000016106) #36	KLB (ENSNSUG00000016107) #37	RPL9 (ENSNSUG00000016108)	LIAS (ENSNSUG00000016109)
Eastern brown snake	MODERN SPECIES	12	USP46 (ENSPTXG00000005910)	RASL11B (ENSPTXG00000005909)	SCFD2 (ENSPTXG00000005906)	ENSPTXG00000005905	LNX1 (ENSPTXG00000005286)	CHIC2 (ENSPTXG00000005285)	GSX2 (ENSPTXG00000005284)	PDGFRA (ENSPTXG00000005108)	KIT (ENSPTXG00000004726)	KDR (ENSPTXG00000004719)	ENSPTXG00000004718	RBPJ (ENSPTXG00000004716) #16	CCKAR (ENSPTXG00000004707) #17	TBC1D19 (ENSPTXG00000004706) #18	STIM2 (ENSPTXG00000004705) #20	PCDH7 (ENSPTXG00000004704) #22	ARAP2 (ENSPTXG00000004702) #24	DTHD1 (ENSPTXG00000004701) #25	NWD2 (ENSPTXG00000004699) #26	ENSPTXG00000004697 #27	RELL1 (ENSPTXG00000004695) #28	PGM2 (ENSPTXG00000004690) #29	TBC1D1 (ENSPTXG00000003167) #30	KLF3 (ENSPTXG00000003142) #31	TLR6 (ENSPTXG00000003138)	FAM114A1 (ENSPTXG00000003136) #32	ENSPTXG00000003133 #34	ENSPTXG00000003132 #34	WDR19 (ENSPTXG00000002040) #35	RFC1 (ENSPTXG00000000555) #36	KLB (ENSPTXG00000000400) #37
Blue-lipped sea krait	MODERN SPECIES	2487																PCDH7 (ENSLLTG00000008217) #22
Indian cobra	MODERN SPECIES	3	SCFD2 (ENSNNAG00000014166)	ENSNNAG00000014116	LNX1 (ENSNNAG00000014069)	CHIC2 (ENSNNAG00000014042)	GSX2 (ENSNNAG00000014028)	PDGFRA (ENSNNAG00000010974)	KIT (ENSNNAG00000008242)	KDR (ENSNNAG00000007823)	ENSNNAG00000007785	RBPJ (ENSNNAG00000007657) #16	CCKAR (ENSNNAG00000007585) #17	TBC1D19 (ENSNNAG00000007498) #18	STIM2 (ENSNNAG00000007431) #20	ENSNNAG00000007417	ENSNNAG00000007402	PCDH7 (ENSNNAG00000007378) #22	ENSNNAG00000007360	ENSNNAG00000007348	DTHD1 (ENSNNAG00000007301) #25	NWD2 (ENSNNAG00000007268) #26	RELL1 (ENSNNAG00000007248) #28	PGM2 (ENSNNAG00000007219) #29	TBC1D1 (ENSNNAG00000005416) #30	KLF3 (ENSNNAG00000005269) #31	TLR6 (ENSNNAG00000005256)	FAM114A1 (ENSNNAG00000005196) #32	KLHL5 (ENSNNAG00000005168) #34	WDR19 (ENSNNAG00000005035) #35	RFC1 (ENSNNAG00000004724) #36	KLB (ENSNNAG00000004660) #37	RPL9 (ENSNNAG00000004630)
Lizard	MODERN SPECIES	927															ENSACAG00000040251	ENSACAG00000002164 #22
Anura	ANCESTRAL SPECIES	2	ENSGT00940000155800	ENSGT00940000162224	ENSGT00390000015958 #7	ENSGT00940000157294 #8	ENSGT00390000007332 #9	ENSGT00390000010434.a #10	ENSGT00390000012556 #11	ENSGT00390000004612	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT00940000157221 #22	ENSGT01030000234945	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00940000162201.b	ENSGT00940000162201.a	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37
Frog	MODERN SPECIES		ENSXETG00000046969	ENSXETG00000020344	pi4k2b (ENSXETG00000000962) #10	zcchc4 (ENSXETG00000000960) #11	anapc4 (ENSXETG00000000957)	slc34a2 (ENSXETG00000000954) ##13	sel1l3 (ENSXETG00000000947) #14	smim20 (ENSXETG00000043460) #15	rbpj (ENSXETG00000046629) #16	cckar (ENSXETG00000000911) #17	tbc1d19 (ENSXETG00000000906) #18	stim2 (ENSXETG00000043520) #20	ENSXETG00000047147	ENSXETG00000048313	ENSXETG00000038696 #20	pcdh7 (ENSXETG00000022281) #22	ENSXETG00000044050	ENSXETG00000045277	ENSXETG00000042544	arap2 (ENSXETG00000030656) #24	dthd1 (ENSXETG00000010149) #25	nwd2 (ENSXETG00000010150) #26	rell1 (ENSXETG00000018465) #28	pgm2 (ENSXETG00000018469) #29	tbc1d1 (ENSXETG00000018473) #30	klf3 (ENSXETG00000018476) #31	tmem128l (ENSXETG00000027646)	tlr6 (ENSXETG00000018477)	tlr1 (ENSXETG00000049206)	XB5889249 [provisional:tlr1] (ENSXETG00000046300)	fam114a1 (ENSXETG00000018498) #32
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000002565	ENSLLEG00000002525 ##13	SEL1L3 (ENSLLEG00000002464) #14	SMIM20 (ENSLLEG00000002447) #15	ENSLLEG00000002439	RBPJ (ENSLLEG00000002191) #16	CCKAR (ENSLLEG00000002111) #17	TBC1D19 (ENSLLEG00000001951) #18	ENSLLEG00000001885	ENSLLEG00000001875	ENSLLEG00000001870	STIM2 (ENSLLEG00000001772) #20	ENSLLEG00000001744	ENSLLEG00000001733	SUMO4 (ENSLLEG00000001722) #23	PCDH7 (ENSLLEG00000001706) #22	ENSLLEG00000001692	ENSLLEG00000001685	ENSLLEG00000001675	ENSLLEG00000001663	ENSLLEG00000001653	ENSLLEG00000001642	ARAP2 (ENSLLEG00000001523) #24	DTHD1 (ENSLLEG00000001477) #25	ENSLLEG00000001456	NWD2 (ENSLLEG00000001408) #26	ENSLLEG00000001385	RELL1 (ENSLLEG00000001341) #28	ENSLLEG00000001319	ENSLLEG00000001306	TBC1D1 (ENSLLEG00000001090) #30
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	2525																PCDH7 (ENSLACG00000006325) #22
Coelacanth	MODERN SPECIES	1584																ENSLACG00000022290 #22
Actinopterygii	ANCESTRAL SPECIES	48	ENSGT01070000253744.a.b	ENSGT00930000151028	ENSGT00940000173647	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000160197 #24	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00940000159709 #28	ENSGT00940000156247 #29	ENSGT01030000235076	ENSGT00940000157949 #30	ENSGT00940000157456 #31	ENSGT00390000010054.b #32	ENSGT00940000155358 #34	ENSGT00590000083165 #35	ENSGT00730000111066 #36	ENSGT00940000157489 #37	ENSGT00390000015224.d	ENSGT00390000006234
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	13	NUDT6 (ENSECRG00000004232)	FGF2 (ENSECRG00000004225)	BBS12 (ENSECRG00000004215)	ENSECRG00000004207	adad1 (ENSECRG00000004183)	kiaa1109 (ENSECRG00000004144)	trpc3 (ENSECRG00000004043)	bbs7 (ENSECRG00000004022)	AADAT (ENSECRG00000004005)	mfap3l (ENSECRG00000004003)	rbpjb (ENSECRG00000003971) #16	CCKAR (ENSECRG00000003953) #17	tbc1d19 (ENSECRG00000003917) #18	STIM2 (ENSECRG00000003906) #20	ENSECRG00000003896	PCDH7 (ENSECRG00000003889) #22	ENSECRG00000003885 #22	ENSECRG00000003880	ARAP2 (ENSECRG00000003861) #24	DTHD1 (ENSECRG00000003850) #25	ENSECRG00000003845	NWD2 (ENSECRG00000003842) #26	RELL1 (ENSECRG00000003837) #28	pgm2 (ENSECRG00000003830) #29	ENSECRG00000003826	TBC1D1 (ENSECRG00000003819) #30	klf3 (ENSECRG00000003813) #31	ENSECRG00000003794	tlr1 (ENSECRG00000003785)	tlr1 (ENSECRG00000003777)	fam114a1 (ENSECRG00000003758) #32
Reedfish	MODERN SPECIES	13	FGF2 (ENSECRG00000004225)	BBS12 (ENSECRG00000004215)	ENSECRG00000004207	adad1 (ENSECRG00000004183)	kiaa1109 (ENSECRG00000004144)	trpc3 (ENSECRG00000004043)	bbs7 (ENSECRG00000004022)	AADAT (ENSECRG00000004005)	mfap3l (ENSECRG00000004003)	rbpjb (ENSECRG00000003971) #16	CCKAR (ENSECRG00000003953) #17	tbc1d19 (ENSECRG00000003917) #18	STIM2 (ENSECRG00000003906) #20	ENSECRG00000003896	PCDH7 (ENSECRG00000003889) #22	ENSECRG00000003885 #22	ENSECRG00000003880	ARAP2 (ENSECRG00000003861) #24	DTHD1 (ENSECRG00000003850) #25	ENSECRG00000003845	NWD2 (ENSECRG00000003842) #26	RELL1 (ENSECRG00000003837) #28	pgm2 (ENSECRG00000003830) #29	ENSECRG00000003826	TBC1D1 (ENSECRG00000003819) #30	klf3 (ENSECRG00000003813) #31	ENSECRG00000003794	tlr1 (ENSECRG00000003785)	tlr1 (ENSECRG00000003777)	fam114a1 (ENSECRG00000003758) #32	ENSECRG00000003754
Neopterygii	ANCESTRAL SPECIES	234				ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00950000183177.b ##13	ENSGT00940000159983 #14	ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00940000159709 #28
Spotted gar	MODERN SPECIES	670	fbxl5 (ENSLOCG00000009829)	CD38 (ENSLOCG00000009822)	CD38 (ENSLOCG00000009818)	TNIP3 (ENSLOCG00000009803)	ndnf (ENSLOCG00000009792)	prdm5 (ENSLOCG00000009778)	ENSLOCG00000018032	ENSLOCG00000009766 ##13	SEL1L3 (ENSLOCG00000009749) #14	smim20 (ENSLOCG00000009742) #15	rbpjb (ENSLOCG00000009731) #16	CCKAR (ENSLOCG00000009722) #17	tbc1d19 (ENSLOCG00000009710) #18	STIM2 (ENSLOCG00000009697) #20	ENSLOCG00000018030	PCDH7 (ENSLOCG00000009687) #22	ENSLOCG00000009676	ENSLOCG00000018028	ENSLOCG00000009670	NWD2 (ENSLOCG00000009653) #26	rell1 (ENSLOCG00000009640) #28	NEK1 (ENSLOCG00000009634)	ENSLOCG00000009628	ENSLOCG00000018026	CPLX1 (ENSLOCG00000009620)	PCGF3 (ENSLOCG00000009614)	SLC49A3 (ENSLOCG00000009600)	xpa (ENSLOCG00000009592)	NCBP1 (ENSLOCG00000009579)	TSTD2 (ENSLOCG00000009569)	SEC24B (ENSLOCG00000009547)
Osteoglossocephalai	ANCESTRAL SPECIES	308									ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT01030000234945	ENSGT00940000157221 #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28
Osteoglossiformes	ANCESTRAL SPECIES	89											ENSGT00390000002398 #15	ENSGT00390000005197.a #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221 #22	ENSGT00940000167169	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00390000009416	ENSGT00940000159192	ENSGT00940000155857.e	ENSGT00940000159350
P. kingsleyae	MODERN SPECIES	197																PCDH7 (ENSPKIG00000011997) #22	ENSPKIG00000011980	ENSPKIG00000011953	NWD2 (ENSPKIG00000011915) #26	zgc:194930 (ENSPKIG00000011888)	rell1 (ENSPKIG00000011835) #28	ENSPKIG00000011806	ENSPKIG00000011771	nkx3-2 (ENSPKIG00000011760)	RAB28 (ENSPKIG00000011728)
Asian bonytongue	MODERN SPECIES	2	dhrs4 (ENSSFOG00015002275)	gmpr2 (ENSSFOG00015002314)	NEDD8 (ENSSFOG00015032897)	ENSSFOG00015002371	ENSSFOG00015002420	f13a1b (ENSSFOG00015002426)	ENSSFOG00015002453	ENSSFOG00015028956	ENSSFOG00015033022	ENSSFOG00015028397	smim20 (ENSSFOG00015006459) #15	rbpjb (ENSSFOG00015026300) #16	CCKAR (ENSSFOG00015033093) #17	tbc1d19 (ENSSFOG00015006278) #18	STIM2 (ENSSFOG00015006168) #20	PCDH7 (ENSSFOG00015006133) #22	ENSSFOG00015006096	NWD2 (ENSSFOG00015006062) #26	zgc:194930 (ENSSFOG00015006057)	rell1 (ENSSFOG00015024304) #28	nkx3-2 (ENSSFOG00015030886)	RAB28 (ENSSFOG00015025065)	ENSSFOG00015028244	ENSSFOG00015025740	HS3ST1 (ENSSFOG00015005823)	ENSSFOG00015005790	WDR1 (ENSSFOG00015005746)	SLC2A9 (ENSSFOG00015005679)	ENSSFOG00015030232	OTOP1 (ENSSFOG00015024418)	TMEM128 (ENSSFOG00015005582)
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	179	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT01030000234945	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28
Otomorpha	ANCESTRAL SPECIES	392										ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT01030000234945	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28
Otophysi	ANCESTRAL SPECIES	161					ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT01030000234945	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000159709 #28	ENSGT00980000199058	ENSGT00940000153648.b #26
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000159709 #28	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT00940000157221.w.b #22	ENSGT00940000167169	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00940000158388.b	ENSGT00940000157094	ENSGT00940000164076.a.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883.b	ENSGT00940000165991	ENSGT00940000164592	ENSGT00940000153284.a.mc.a	ENSGT00940000153904.b	ENSGT00950000182963.b.b
Cyprininae	ANCESTRAL SPECIES	335	ENSGT00940000153648.b.k #26	ENSGT00980000199058.a	ENSGT00940000159709.b #28	ENSGT00390000015545.b	ENSGT00940000158971.bb.a	ENSGT00940000166804.b	ENSGT00940000159570.b.e	ENSGT00530000063812.C.a	ENSGT00890000139482.a.b	ENSGT00550000074944.h	ENSGT00390000002398.o.b #15	ENSGT00390000005197.a.cb.a #16	ENSGT01100000263563.c.b.b #17	ENSGT00390000015965.b #18	ENSGT00390000000214.a.b.k.c #20	ENSGT00940000157221.w.a #22	ENSGT00940000159217.c.a	ENSGT00940000159264.f.e	ENSGT00940000162334.a	ENSGT00940000157094.y.a	ENSGT00940000164076.a.a.a	ENSGT00940000157678.d	ENSGT00940000162034.b	ENSGT00940000160883.b.b	ENSGT00940000165991.q	ENSGT00940000164592.c	ENSGT00940000153284.a.mc.a.b	ENSGT00940000153904.b.b	ENSGT00950000182963.b.b.o.b	ENSGT00390000005569.i	ENSGT00530000063624.B.c
Goldfish	MODERN SPECIES	25	vstm2b (ENSCARG00000005938)	NWD2 (ENSCARG00000005972) #26	zgc:194930 (ENSCARG00000005988)	rell1 (ENSCARG00000005991) #28	ENSCARG00000006027	rwdd (ENSCARG00000006205)	ENSCARG00000006281	HTRA3 (ENSCARG00000006395)	ENSCARG00000006416	plaa (ENSCARG00000006465)	smim20 (ENSCARG00000006708) #15	rbpjb (ENSCARG00000006750) #16	CCKAR (ENSCARG00000007033) #17	STIM2 (ENSCARG00000007210) #20	ENSCARG00000007892	PCDH7 (ENSCARG00000007897) #22	ENSCARG00000007906	ENSCARG00000007912	ENSCARG00000007914	kcnk5a (ENSCARG00000007921)	ENSCARG00000007929	gnmt (ENSCARG00000007936)	ENSCARG00000007943	cct7 (ENSCARG00000007967)	ENSCARG00000008566	ENSCARG00000008571	ENSCARG00000008582	ppp1r14bb (ENSCARG00000008604)	ENSCARG00000008613	ENSCARG00000008615	ENSCARG00000008622
Cyprininae_a	ANCESTRAL SPECIES	55	ENSGT00980000199058.a	ENSGT00940000159709.b #28	ENSGT00390000015545.b	ENSGT00940000158971.bb.a	ENSGT00940000166804.b	ENSGT00940000159423.d	ENSGT00940000159570.b.e	ENSGT00530000063812.C.a	ENSGT00890000139482.a.b	ENSGT00550000074944.h	ENSGT00390000002398.o.b #15	ENSGT00390000005197.a.cb.a #16	ENSGT01100000263563.c.b.b #17	ENSGT00390000015965.b #18	ENSGT00390000000214.a.b.k.c #20	ENSGT00940000157221.w.a #22	ENSGT00940000159217.c.a	ENSGT00940000159264.f.e	ENSGT00940000162334.a	ENSGT00940000157094.y.a	ENSGT00940000164076.a.a.a	ENSGT00940000162034.b	ENSGT00940000160883.b.b	ENSGT00940000165991.q	ENSGT00940000164592.c	ENSGT00940000153284.a.mc.a.b	ENSGT00940000153904.b.b	ENSGT00950000182963.b.b.o.b	ENSGT00390000005569.i	ENSGT00530000063624.B.c	ENSGT00950000183118.A.c.b.a.a
Common carp reference	MODERN SPECIES	6	rwdd (ENSCCRG00000013450)	ENSCCRG00000023192	ENSCCRG00000057090	acox3 (ENSCCRG00000077056)	ENSCCRG00000080751	ENSCCRG00000065060	ENSCCRG00000058589	ENSCCRG00000067770	tdrd7b (ENSCCRG00000049209)	plaa (ENSCCRG00000038774)	smim20 (ENSCCRG00000021030) #15	rbpjb (ENSCCRG00000034784) #16	CCKAR (ENSCCRG00000002393) #17	tbc1d19 (ENSCCRG00000069511) #18	STIM2 (ENSCCRG00000034564) #20	PCDH7 (ENSCCRG00000068069) #22	ENSCCRG00000059886	ENSCCRG00000061451	ENSCCRG00000076759	ENSCCRG00000074811	ENSCCRG00000081820	per1b (ENSCCRG00000007240)	pcolceb (ENSCCRG00000007231)	ankrd46b (ENSCCRG00000019651)	ENSCCRG00000022165	ENSCCRG00000057269	ENSCCRG00000024939	gc2 (ENSCCRG00000022788)	rasl11a (ENSCCRG00000042439)	ENSCCRG00000078793	ENSCCRG00000016697
Golden-line barbel	MODERN SPECIES	777																PCDH7 (ENSSGRG00000028310) #22
Zebrafish	MODERN SPECIES	22	rell1 (ENSDARG00000018312) #28	rwdd (ENSDARG00000068256)	ENSDARG00000059693	ENSDARG00000068258	acox3 (ENSDARG00000038865)	HTRA3 (ENSDARG00000010925)	ENSDARG00000077330	ENSDARG00000099586	tdrd7b (ENSDARG00000077523)	plaa (ENSDARG00000042728)	smim20 (ENSDARG00000112670) #15	rbpjb (ENSDARG00000052091) #16	CCKAR (ENSDARG00000052089) #17	tbc1d19 (ENSDARG00000013842) #18	STIM2 (ENSDARG00000001776) #20	PCDH7 (ENSDARG00000060610) #22	ENSDARG00000094805	ENSDARG00000101994	ENSDARG00000100518	zdhhc21 (ENSDARG00000110709)	ENSDARG00000074782	sinhcafl (ENSDARG00000078118)	DENND5A (ENSDARG00000017006)	tmem41b (ENSDARG00000080006)	ipo7 (ENSDARG00000035751)	ENSDARG00000105344	bco1l (ENSDARG00000103659)	bco1 (ENSDARG00000104256)	bola3 (ENSDARG00000098130)	vat1l (ENSDARG00000101280)	CLEC3A (ENSDARG00000110756)
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Cyprinodontoidei	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Poeciliinae	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Poecilia	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
NAME_6	ANCESTRAL SPECIES	53	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000157221.w.b #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.n	ENSGT00940000163927.a.a.m	ENSGT01020000230586
Sailfin molly	MODERN SPECIES	1444																ENSPLAG00000008774 #22	ENSPLAG00000008843
Amazon molly	MODERN SPECIES	293	zgc:103586 (ENSPFOG00000012848)	fis1 (ENSPFOG00000012822)	cldn15a (ENSPFOG00000012792)	dnajc3b (ENSPFOG00000012678)	naa38 (ENSPFOG00000012670)	CHD3 (ENSPFOG00000012464)	tnfsf12 (ENSPFOG00000012440)	sat2a.2 (ENSPFOG00000012407)	ENSPFOG00000012401	MAN2B2 (ENSPFOG00000012127)	ENSPFOG00000024816	RBPJ (ENSPFOG00000012004) #16	CCKAR (ENSPFOG00000011947) #17	tbc1d19 (ENSPFOG00000011796) #18	STIM2 (ENSPFOG00000011706) #20	ENSPFOG00000024745 #22	PCDH7 (ENSPFOG00000011689) #22	ENSPFOG00000011485	ENSPFOG00000011416 #25	NWD2 (ENSPFOG00000011365) #26	ENSPFOG00000020015	RELL1 (ENSPFOG00000022963) #28	per1b (ENSPFOG00000011185)	pcolceb (ENSPFOG00000011106)	ENSPFOG00000011090	ENSPFOG00000010952	cnpy4 (ENSPFOG00000010908)	ENSPFOG00000010831	ENSPFOG00000010686	ponzr1 (ENSPFOG00000021825)	ponzr1 (ENSPFOG00000010662)
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Cichlidae	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Pseudocrenilabrinae	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Lyretail cichlid	MODERN SPECIES	372	dnajc3b (ENSNBRG00000000306)	naa38 (ENSNBRG00000000619)	CHD3 (ENSNBRG00000000636)	tnfsf12 (ENSNBRG00000000738)	ENSNBRG00000000769	ENSNBRG00000000789	ENSNBRG00000000801	MAN2B2 (ENSNBRG00000000832)	smim20 (ENSNBRG00000000899) #15	RBPJ (ENSNBRG00000000915) #16	CCKAR (ENSNBRG00000000971) #17	ENSNBRG00000001001	tbc1d19 (ENSNBRG00000001017) #18	STIM2 (ENSNBRG00000001092) #20	ENSNBRG00000001349	ENSNBRG00000001653 #22	PCDH7 (ENSNBRG00000001672) #22	ENSNBRG00000001686	ENSNBRG00000001756 #25	NWD2 (ENSNBRG00000001779) #26	ENSNBRG00000001820	rell1 (ENSNBRG00000001832) #28	ENSNBRG00000001854	per1b (ENSNBRG00000001871)	pcolceb (ENSNBRG00000001936)	ENSNBRG00000001941	ponzr1 (ENSNBRG00000001960)	ENSNBRG00000001967	ponzr1 (ENSNBRG00000001976)	POLR2A (ENSNBRG00000002005)	ENSNBRG00000002092
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Bicolor damselfish	MODERN SPECIES	1656																ENSSPAG00000002890 #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Clown anemonefish	MODERN SPECIES	2418																ENSAOCG00000002383 #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000157221.w.b #22
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT00940000157221.w.b #22	ENSGT00940000167169	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00940000158388.b	ENSGT00940000157094	ENSGT00940000164076.a.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883.b	ENSGT00940000165991	ENSGT00940000164592	ENSGT00940000153284.a.mc.a	ENSGT00940000153904.b	ENSGT00950000182963.b.b	ENSGT00390000005569
Cyprininae	ANCESTRAL SPECIES	35																ENSGT00940000157221.w.b #22	ENSGT00940000167169.e	ENSGT00940000159217.c.b	ENSGT00940000159264.f.f	ENSGT00940000162334.b	ENSGT00940000157094.y.b	ENSGT00940000164076.a.a.b	ENSGT00940000153991.a.a.ab	ENSGT00940000162034.a	ENSGT00940000160883.b.a	ENSGT00940000165991.r	ENSGT00940000164592.d	ENSGT00940000153284.a.mc.a.a	ENSGT00940000153904.b.a	ENSGT00950000182963.b.b.o.a	ENSGT00390000005569.j
Cyprininae_a	ANCESTRAL SPECIES	128	ENSGT00940000159709.a #28	ENSGT00390000015545.a	ENSGT00940000158971.bb.b	ENSGT00940000166804.a	ENSGT00940000159423.c	ENSGT00940000159570.b.f	ENSGT00530000063812.C.b	ENSGT00940000164745.i.b	ENSGT00890000139482.a.a	ENSGT00550000074944.g	ENSGT00390000002398.o.a #15	ENSGT00390000005197.a.cb.b #16	ENSGT01100000263563.c.b.a #17	ENSGT00390000015965.a #18	ENSGT00390000000214.a.b.k.d #20	ENSGT00940000157221.w.b #22	ENSGT00940000167169.e	ENSGT00940000159217.c.b	ENSGT00940000159264.f.f	ENSGT00940000162334.b	ENSGT00940000157094.y.b	ENSGT00940000164076.a.a.b	ENSGT00940000153991.a.a.ab	ENSGT00940000162034.a	ENSGT00940000160883.b.a	ENSGT00940000165991.r	ENSGT00940000164592.d	ENSGT00940000153284.a.mc.a.a	ENSGT00940000153904.b.a	ENSGT00950000182963.b.b.o.a	ENSGT00390000005569.j
Golden-line barbel	MODERN SPECIES	1218																PCDH7 (ENSSGRG00000029335) #22
Common carp reference	MODERN SPECIES		ENSCCRG00000041162	ENSCCRG00000050128	acox3 (ENSCCRG00000074050)	ENSCCRG00000069242	ENSCCRG00000060694	ENSCCRG00000035054	tdrd7b (ENSCCRG00000035428)	plaa (ENSCCRG00000021039)	smim20 (ENSCCRG00000043202) #15	rbpjb (ENSCCRG00000072958) #16	CCKAR (ENSCCRG00000034676) #17	tbc1d19 (ENSCCRG00000016172) #18	STIM2 (ENSCCRG00000067311) #20	ENSCCRG00000058270	ENSCCRG00000081695	PCDH7 (ENSCCRG00000078409) #22	ENSCCRG00000025510	per1b (ENSCCRG00000025395)	pcolceb (ENSCCRG00000025382)	ankrd46b (ENSCCRG00000025376)	ENSCCRG00000061144	ENSCCRG00000054488	ENSCCRG00000073908	ENSCCRG00000024928	gc2 (ENSCCRG00000042447)	rasl11a (ENSCCRG00000065657)	ENSCCRG00000065649	arhgap36 (ENSCCRG00000014502)	ENSCCRG00000063739	rps4x (ENSCCRG00000026927)	cited1 (ENSCCRG00000056658)
Goldfish	MODERN SPECIES	47	ENSCARG00000015321	got2b (ENSCARG00000014368)	slc38a7 (ENSCARG00000014315)	si:ch211-122f10.4 (ENSCARG00000014301)	tmem208 (ENSCARG00000014294)	katnb1 (ENSCARG00000014248)	SLCO3A1 (ENSCARG00000014218)	gnrhr2 (ENSCARG00000014205)	MYZAP (ENSCARG00000014192)	CGNL1 (ENSCARG00000014179)	tcf12 (ENSCARG00000013676)	ENSCARG00000013615	mtfmt (ENSCARG00000013599)	PPIP5K1 (ENSCARG00000013418)	MAP1A (ENSCARG00000013378)	PCDH7 (ENSCARG00000013375) #22	ENSCARG00000013008	per1b (ENSCARG00000012891)	pcolceb (ENSCARG00000012861)	PAQR9 (ENSCARG00000012850)	ankrd46b (ENSCARG00000012841)	COL4A6 (ENSCARG00000012637)	COL4A5 (ENSCARG00000012569)	IRS4 (ENSCARG00000012558)	gc2 (ENSCARG00000010296)	rasl11a (ENSCARG00000010186)	ENSCARG00000010159	arhgap36 (ENSCARG00000010122)	NHSL2 (ENSCARG00000010103)	rps4x (ENSCARG00000010083)	cited1 (ENSCARG00000010077)
Clupeocephala	ANCESTRAL SPECIES	179	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT01030000234945	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28
Euteleosteomorpha	ANCESTRAL SPECIES	78	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28	ENSGT00940000158370	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00970000193685	ENSGT00940000158971	ENSGT00390000015545
Acanthomorphata	ANCESTRAL SPECIES	50	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00970000198440	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00980000199058	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586
Pinecone sodierfish	MODERN SPECIES	9	cldn15a (ENSMMDG00005012642)	dnajc3b (ENSMMDG00005012648)	naa38 (ENSMMDG00005012831)	cyb5d1 (ENSMMDG00005012834)	CHD3 (ENSMMDG00005012922)	tnfsf12 (ENSMMDG00005015565)	sat2a.2 (ENSMMDG00005015566)	ENSMMDG00005015569	ENSMMDG00005015571	MAN2B2 (ENSMMDG00005015578)	smim20 (ENSMMDG00005015589) #15	rbpjb (ENSMMDG00005015594) #16	CCKAR (ENSMMDG00005015984) #17	tbc1d19 (ENSMMDG00005015988) #18	STIM2 (ENSMMDG00005015995) #20	PCDH7 (ENSMMDG00005016272) #22	ENSMMDG00005016277	DTHD1 (ENSMMDG00005016470) #25	NWD2 (ENSMMDG00005016473) #26	ENSMMDG00005016476	rell1 (ENSMMDG00005016478) #28	per1b (ENSMMDG00005016500)	pcolceb (ENSMMDG00005016990)	ENSMMDG00005017038	ENSMMDG00005017042	cnpy4 (ENSMMDG00005017126)	ENSMMDG00005017128	ENSMMDG00005017132	ponzr1 (ENSMMDG00005017133)	ENSMMDG00005017134	acadvl (ENSMMDG00005017165)
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586
Tiger tail seahorse	MODERN SPECIES	506	C4orf48 (ENSHCOG00000010950)	nelfa (ENSHCOG00000010961)	faah2b (ENSHCOG00000010968)	TESK1 (ENSHCOG00000011012)	NFIB (ENSHCOG00000011049)	zdhhc21 (ENSHCOG00000011062)	ENSHCOG00000011073	ENSHCOG00000011083	ENSHCOG00000011100	GBA2 (ENSHCOG00000011163)	rgp1 (ENSHCOG00000011189)	MSMP (ENSHCOG00000011202)	pik3c3 (ENSHCOG00000011229)	ENSHCOG00000011243	STIM2 (ENSHCOG00000011263) #20	PCDH7 (ENSHCOG00000011283) #22	ENSHCOG00000011313	ENSHCOG00000011322	slx1b (ENSHCOG00000011332)	zgc:112271 (ENSHCOG00000011345)	ENSHCOG00000011351	zgc:112271 (ENSHCOG00000011359)	zgc:112271 (ENSHCOG00000011368)	ENSHCOG00000011377	sf1 (ENSHCOG00000011388)	rbm4.1 (ENSHCOG00000011403)	ENSHCOG00000011413	map4k2 (ENSHCOG00000011469)	men1 (ENSHCOG00000011488)	ENSHCOG00000011518	ing2 (ENSHCOG00000011528)
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263518.C	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.b
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000027071	ENSMAMG00000000564	ENSMAMG00000000665	tnfsf12 (ENSMAMG00000000677)	ENSMAMG00000000707	ENSMAMG00000024604	ENSMAMG00000027744	ENSMAMG00000000739	ENSMAMG00000000761	ENSMAMG00000000773	smim20 (ENSMAMG00000000851) #15	RBPJ (ENSMAMG00000000866) #16	CCKAR (ENSMAMG00000000922) #17	tbc1d19 (ENSMAMG00000000973) #18	STIM2 (ENSMAMG00000001115) #20	PCDH7 (ENSMAMG00000001148) #22	ENSMAMG00000001177	ENSMAMG00000001221	ENSMAMG00000001243 #25	NWD2 (ENSMAMG00000001275) #26	ENSMAMG00000025977	RELL1 (ENSMAMG00000001360) #28	ENSMAMG00000001379	ENSMAMG00000001473	ENSMAMG00000025692	ENSMAMG00000001649	cnpy4 (ENSMAMG00000001907)	ENSMAMG00000001953	ENSMAMG00000002287	ENSMAMG00000002637	ponzr1 (ENSMAMG00000027885)
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.a	ENSGT01020000230586
Siamese fighting fish	MODERN SPECIES	10	zgc:103586 (ENSBSLG00000001846)	cldn15a (ENSBSLG00000001851)	dnajc3b (ENSBSLG00000001862)	naa38 (ENSBSLG00000001869)	ENSBSLG00000002016	tnfsf12 (ENSBSLG00000002135)	sat2a.2 (ENSBSLG00000002151)	ENSBSLG00000002167	MAN2B2 (ENSBSLG00000002325)	smim20 (ENSBSLG00000002760) #15	RBPJ (ENSBSLG00000002816) #16	CCKAR (ENSBSLG00000003013) #17	tbc1d19 (ENSBSLG00000003019) #18	STIM2 (ENSBSLG00000003795) #20	ENSBSLG00000004030	PCDH7 (ENSBSLG00000004046) #22	ENSBSLG00000004096	DTHD1 (ENSBSLG00000004288) #25	NWD2 (ENSBSLG00000004767) #26	ENSBSLG00000004820	rell1 (ENSBSLG00000004861) #28	per1b (ENSBSLG00000004934)	pcolceb (ENSBSLG00000005246)	ENSBSLG00000005348	ENSBSLG00000005381	ENSBSLG00000005443	ENSBSLG00000005463	ENSBSLG00000005514	cnpy4 (ENSBSLG00000005604)	ENSBSLG00000005631	ENSBSLG00000005661
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	9	ENSATEG00000001120	fis1 (ENSATEG00000027779)	ENSATEG00000001079	dnajc3b (ENSATEG00000001015)	ENSATEG00000029131	ENSATEG00000000848	tnfsf12 (ENSATEG00000000804)	sat2a.2 (ENSATEG00000029588)	ENSATEG00000000737	ENSATEG00000000709	ENSATEG00000000701	smim20 (ENSATEG00000000682) #15	RBPJ (ENSATEG00000000635) #16	CCKAR (ENSATEG00000000609) #17	STIM2 (ENSATEG00000000502) #20	PCDH7 (ENSATEG00000000477) #22	ENSATEG00000029285 #22	ENSATEG00000000461	DTHD1 (ENSATEG00000000425) #25	NWD2 (ENSATEG00000000389) #26	ENSATEG00000000374	RELL1 (ENSATEG00000000367) #28	ENSATEG00000000356	ENSATEG00000000342	ENSATEG00000028316	ENSATEG00000000331	ENSATEG00000000312	cnpy4 (ENSATEG00000000305)	ENSATEG00000000297	ENSATEG00000000290	ENSATEG00000030189
Climbing perch	MODERN SPECIES	9	fis1 (ENSATEG00000027779)	ENSATEG00000001079	dnajc3b (ENSATEG00000001015)	ENSATEG00000029131	ENSATEG00000000848	tnfsf12 (ENSATEG00000000804)	sat2a.2 (ENSATEG00000029588)	ENSATEG00000000737	ENSATEG00000000709	ENSATEG00000000701	smim20 (ENSATEG00000000682) #15	RBPJ (ENSATEG00000000635) #16	CCKAR (ENSATEG00000000609) #17	STIM2 (ENSATEG00000000502) #20	PCDH7 (ENSATEG00000000477) #22	ENSATEG00000029285 #22	ENSATEG00000000461	DTHD1 (ENSATEG00000000425) #25	NWD2 (ENSATEG00000000389) #26	ENSATEG00000000374	RELL1 (ENSATEG00000000367) #28	ENSATEG00000000356	ENSATEG00000000342	ENSATEG00000028316	ENSATEG00000000331	ENSATEG00000000312	cnpy4 (ENSATEG00000000305)	ENSATEG00000000297	ENSATEG00000000290	ENSATEG00000030189	ponzr1 (ENSATEG00000000277)
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535
Carangaria_A	ANCESTRAL SPECIES	26	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535
Seriola	ANCESTRAL SPECIES	66															ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535
Greater amberjack	MODERN SPECIES	117															STIM2 (ENSSDUG00000021614) #20	PCDH7 (ENSSDUG00000021602) #22	ENSSDUG00000021586	DTHD1 (ENSSDUG00000021571) #25	NWD2 (ENSSDUG00000021550) #26	ENSSDUG00000021538	rell1 (ENSSDUG00000021532) #28	per1b (ENSSDUG00000021452)	pcolceb (ENSSDUG00000021425)	ENSSDUG00000021412	ENSSDUG00000021396	cnpy4 (ENSSDUG00000021387)	ENSSDUG00000021383	ENSSDUG00000021364	ponzr1 (ENSSDUG00000021358)	ENSSDUG00000021350	acadvl (ENSSDUG00000021300)
Yellowtail amberjack	MODERN SPECIES	3023															STIM2 (ENSSLDG00000022508) #20	PCDH7 (ENSSLDG00000022483) #22	ENSSLDG00000022450	DTHD1 (ENSSLDG00000022370) #25	NWD2 (ENSSLDG00000022343) #26	ENSSLDG00000022324	rell1 (ENSSLDG00000022313) #28	per1b (ENSSLDG00000022250)	pcolceb (ENSSLDG00000022227)	ENSSLDG00000022215	ENSSLDG00000022088	cnpy4 (ENSSLDG00000022035)	ENSSLDG00000021519	ponzr1 (ENSSLDG00000021451)	ENSSLDG00000021442	acadvl (ENSSLDG00000021367)	dvl2 (ENSSLDG00000021340)
Barramundi perch	MODERN SPECIES	151							cldnd1a (ENSLCAG00010016155)	ACY3 (ENSLCAG00010016157)	osbp (ENSLCAG00010016170)	coro1b (ENSLCAG00010016186)	dtx4a (ENSLCAG00010016205)	msantd1 (ENSLCAG00010016212)	ENSLCAG00010016234	HGFAC (ENSLCAG00010016268)	DOK7 (ENSLCAG00010016273)	PCDH7 (ENSLCAG00010016283) #22	ENSLCAG00010016288	DTHD1 (ENSLCAG00010016295) #25	NWD2 (ENSLCAG00010016298) #26	ENSLCAG00010016303	rell1 (ENSLCAG00010016305) #28	ENSLCAG00010016312	per1b (ENSLCAG00010016329)	pcolceb (ENSLCAG00010016358)	ENSLCAG00010016365	ENSLCAG00010016369	ENSLCAG00010016372	cnpy4 (ENSLCAG00010016374)	ENSLCAG00010016381	ENSLCAG00010016393	ponzr1 (ENSLCAG00010016398)
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535
Turbot	MODERN SPECIES	11	dnajc3b (ENSSMAG00000006371)	ENSSMAG00000006429	ENSSMAG00000006451	ENSSMAG00000006597	tnfsf12 (ENSSMAG00000006614)	sat2a.2 (ENSSMAG00000022758)	ENSSMAG00000026882	ENSSMAG00000006694	ENSSMAG00000034893	ENSSMAG00000006703	smim20 (ENSSMAG00000006724) #15	RBPJ (ENSSMAG00000006743) #16	CCKAR (ENSSMAG00000006793) #17	tbc1d19 (ENSSMAG00000006827) #18	STIM2 (ENSSMAG00000006891) #20	PCDH7 (ENSSMAG00000007878) #22	ENSSMAG00000007911	ENSSMAG00000007944 #25	NWD2 (ENSSMAG00000008034) #26	ENSSMAG00000008047	RELL1 (ENSSMAG00000008051) #28	ENSSMAG00000008060	ENSSMAG00000008076	ENSSMAG00000022292	ENSSMAG00000008116	cnpy4 (ENSSMAG00000008141)	ENSSMAG00000008156	ENSSMAG00000008158	ponzr1 (ENSSMAG00000008190)	ENSSMAG00000008220	acadvl (ENSSMAG00000008208)
Tongue sole	MODERN SPECIES		CPZ (ENSCSEG00000002530)	ENSCSEG00000002526	HMX1 (ENSCSEG00000002525)	ADRA2C (ENSCSEG00000002521)	DOK7 (ENSCSEG00000002509)	HGFAC (ENSCSEG00000002504)	ENSCSEG00000002496	ENSCSEG00000002486	msantd1 (ENSCSEG00000002483)	dtx4a (ENSCSEG00000002461)	ENSCSEG00000002457	coro1b (ENSCSEG00000002452)	osbp (ENSCSEG00000002432)	cldnd1a (ENSCSEG00000002427)	ENSCSEG00000002424	PCDH7 (ENSCSEG00000001958) #22	ENSCSEG00000001624	DTHD1 (ENSCSEG00000001359) #25	NWD2 (ENSCSEG00000001352) #26	ENSCSEG00000001346	rell1 (ENSCSEG00000001341) #28	per1b (ENSCSEG00000001323)	pcolceb (ENSCSEG00000001304)	ENSCSEG00000001301	ENSCSEG00000001293	cnpy4 (ENSCSEG00000001284)	ENSCSEG00000001213	ENSCSEG00000001203	ENSCSEG00000001197	ENSCSEG00000001189	ponzr1 (ENSCSEG00000001188)
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Tetraodontidae	ANCESTRAL SPECIES	29	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535
Fugu	MODERN SPECIES	20	tm4sf5 (ENSTRUG00000015352)	zgc:103586 (ENSTRUG00000015344)	fis1 (ENSTRUG00000028230)	cldn15a (ENSTRUG00000015308)	dnajc3b (ENSTRUG00000015269)	naa38 (ENSTRUG00000026123)	CHD3 (ENSTRUG00000014990)	tnfsf12 (ENSTRUG00000014986)	sat2a.2 (ENSTRUG00000014957)	ENSTRUG00000019816	MAN2B2 (ENSTRUG00000025905)	smim20 (ENSTRUG00000025116) #15	rbpjb (ENSTRUG00000014707) #16	CCKAR (ENSTRUG00000014776) #17	STIM2 (ENSTRUG00000014691) #20	PCDH7 (ENSTRUG00000014668) #22	ENSTRUG00000014635	ENSTRUG00000014629 #25	NWD2 (ENSTRUG00000014613) #26	ENSTRUG00000021077	rell1 (ENSTRUG00000022108) #28	per1b (ENSTRUG00000014420)	pcolceb (ENSTRUG00000014354)	ENSTRUG00000028673	ENSTRUG00000014351	cnpy4 (ENSTRUG00000014142)	ENSTRUG00000014066	ENSTRUG00000027326	ponzr1 (ENSTRUG00000013896)	ENSTRUG00000013893	acadvl (ENSTRUG00000013710)
Tetraodon	MODERN SPECIES	14	mettl3 (ENSTNIG00000013005)	tm4sf5 (ENSTNIG00000013004)	zgc:103586 (ENSTNIG00000013003)	fis1 (ENSTNIG00000013002)	cldn15a (ENSTNIG00000013001)	dnajc3b (ENSTNIG00000013000)	naa38 (ENSTNIG00000012999)	CHD3 (ENSTNIG00000012998)	tnfsf12 (ENSTNIG00000012997)	ENSTNIG00000002037	MAN2B2 (ENSTNIG00000012995)	RBPJ (ENSTNIG00000012994) #16	CCKAR (ENSTNIG00000012993) #17	tbc1d19 (ENSTNIG00000012992) #18	STIM2 (ENSTNIG00000012991) #20	PCDH7 (ENSTNIG00000006929) #22	ENSTNIG00000006229	ENSTNIG00000000703	ENSTNIG00000007196 #26	rell1 (ENSTNIG00000007197) #28	per1b (ENSTNIG00000007198)	pcolceb (ENSTNIG00000007199)	ENSTNIG00000007200	pcolceb (ENSTNIG00000006851)	ENSTNIG00000006852	ENSTNIG00000006853	cnpy4 (ENSTNIG00000006854)	ENSTNIG00000010160	ENSTNIG00000010159	ponzr1 (ENSTNIG00000010158)	ENSTNIG00000001266
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Ballan wrasse	MODERN SPECIES	23	dnajc3b (ENSLBEG00000028493)	naa38 (ENSLBEG00000028489)	CHD3 (ENSLBEG00000028485)	ENSLBEG00000028482	tnfsf12 (ENSLBEG00000028479)	sat2a.2 (ENSLBEG00000028473)	ENSLBEG00000028472	ENSLBEG00000028470	ENSLBEG00000028467	ENSLBEG00000028465	smim20 (ENSLBEG00000028464) #15	RBPJ (ENSLBEG00000028460) #16	ENSLBEG00000028457	tbc1d19 (ENSLBEG00000028445) #18	STIM2 (ENSLBEG00000028437) #20	PCDH7 (ENSLBEG00000028428) #22	ENSLBEG00000028416	DTHD1 (ENSLBEG00000028403) #25	ENSLBEG00000028402	NWD2 (ENSLBEG00000028396) #26	ENSLBEG00000028394	ENSLBEG00000028381	rell1 (ENSLBEG00000028367) #28	pcolceb (ENSLBEG00000028362)	ENSLBEG00000028355	ENSLBEG00000028354	ENSLBEG00000028352	per1b (ENSLBEG00000028344)	ENSLBEG00000028314	cnpy4 (ENSLBEG00000028306)	ENSLBEG00000028302
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Perciformes	ANCESTRAL SPECIES	19	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT01060000250085	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Pike perch	MODERN SPECIES	81	zgc:103586 (ENSSLUG00000018661)	fis1 (ENSSLUG00000018672)	cldn15a (ENSSLUG00000018675)	dnajc3b (ENSSLUG00000018715)	naa38 (ENSSLUG00000019240)	CHD3 (ENSSLUG00000019415)	tnfsf12 (ENSSLUG00000022559)	sat2a.2 (ENSSLUG00000022569)	ENSSLUG00000022598	MAN2B2 (ENSSLUG00000022634)	smim20 (ENSSLUG00000022672) #15	RBPJ (ENSSLUG00000022688) #16	CCKAR (ENSSLUG00000022732) #17	tbc1d19 (ENSSLUG00000022768) #18	STIM2 (ENSSLUG00000022815) #20	PCDH7 (ENSSLUG00000022841) #22	ENSSLUG00000022847	ENSSLUG00000022854	ENSSLUG00000012312 #25	NWD2 (ENSSLUG00000012318) #26	ENSSLUG00000012324	rell1 (ENSSLUG00000012328) #28	zpax4 (ENSSLUG00000012335)
Channel bull blenny	MODERN SPECIES	9	fis1 (ENSCGOG00000011377)	cldn15a (ENSCGOG00000011375)	dnajc3b (ENSCGOG00000011303)	naa38 (ENSCGOG00000011299)	CHD3 (ENSCGOG00000011146)	tnfsf12 (ENSCGOG00000011139)	sat2a.2 (ENSCGOG00000011135)	ENSCGOG00000011130	ENSCGOG00000011127	MAN2B2 (ENSCGOG00000011043)	smim20 (ENSCGOG00000011039) #15	RBPJ (ENSCGOG00000010659) #16	CCKAR (ENSCGOG00000010625) #17	tbc1d19 (ENSCGOG00000010296) #18	STIM2 (ENSCGOG00000010239) #20	PCDH7 (ENSCGOG00000010234) #22	ENSCGOG00000010233	ENSCGOG00000010232	ENSCGOG00000010182	ENSCGOG00000010175 #25	NWD2 (ENSCGOG00000010171) #26	ENSCGOG00000010170	rell1 (ENSCGOG00000010169) #28	per1b (ENSCGOG00000009956)	pcolceb (ENSCGOG00000009905)	ENSCGOG00000009900	ENSCGOG00000009835	cnpy4 (ENSCGOG00000009825)	ENSCGOG00000009809	ENSCGOG00000009802	ponzr1 (ENSCGOG00000009796)
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586
Stickleback	MODERN SPECIES	7	tm4sf5 (ENSGACG00000019250)	zgc:103586 (ENSGACG00000019255)	fis1 (ENSGACG00000019258)	cldn15a (ENSGACG00000019261)	dnajc3b (ENSGACG00000019265)	naa38 (ENSGACG00000019273)	CHD3 (ENSGACG00000019275)	tnfsf12 (ENSGACG00000019279)	sat2a.2 (ENSGACG00000019280)	ENSGACG00000019285	ENSGACG00000019286	MAN2B2 (ENSGACG00000019289)	CCKAR (ENSGACG00000019294) #17	tbc1d19 (ENSGACG00000019295) #18	STIM2 (ENSGACG00000019297) #20	PCDH7 (ENSGACG00000019299) #22	ENSGACG00000019300	DTHD1 (ENSGACG00000019301) #25	ENSGACG00000019304 #26	NWD2 (ENSGACG00000019305) #26	RELL1 (ENSGACG00000019306) #28	per1b (ENSGACG00000019308)	pcolceb (ENSGACG00000019312)	ENSGACG00000019314	cnpy4 (ENSGACG00000019316)	ENSGACG00000019318	ENSGACG00000019319	ponzr1 (ENSGACG00000019324)	ponzr1 (ENSGACG00000019326)	ENSGACG00000019328	acadvl (ENSGACG00000019329)
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	9	fis1 (ENSCLMG00005007370)	cldn15a (ENSCLMG00005007371)	dnajc3b (ENSCLMG00005007373)	naa38 (ENSCLMG00005007381)	CHD3 (ENSCLMG00005007477)	ENSCLMG00005018955	tnfsf12 (ENSCLMG00005018959)	sat2a.2 (ENSCLMG00005018961)	ENSCLMG00005018965	MAN2B2 (ENSCLMG00005018966)	smim20 (ENSCLMG00005018974) #15	RBPJ (ENSCLMG00005018975) #16	CCKAR (ENSCLMG00005019129) #17	tbc1d19 (ENSCLMG00005019133) #18	STIM2 (ENSCLMG00005019259) #20	PCDH7 (ENSCLMG00005019408) #22	ENSCLMG00005019409 #22	ENSCLMG00005019410	DTHD1 (ENSCLMG00005019411) #25	NWD2 (ENSCLMG00005019412) #26	ENSCLMG00005019413	rell1 (ENSCLMG00005019414) #28	per1b (ENSCLMG00005019416)	pcolceb (ENSCLMG00005019418)	ENSCLMG00005019427	ENSCLMG00005019428	cnpy4 (ENSCLMG00005019458)	ENSCLMG00005019459	ENSCLMG00005019461	ENSCLMG00005019486	ponzr1 (ENSCLMG00005019487)
Lumpfish	MODERN SPECIES	9	cldn15a (ENSCLMG00005007371)	dnajc3b (ENSCLMG00005007373)	naa38 (ENSCLMG00005007381)	CHD3 (ENSCLMG00005007477)	ENSCLMG00005018955	tnfsf12 (ENSCLMG00005018959)	sat2a.2 (ENSCLMG00005018961)	ENSCLMG00005018965	MAN2B2 (ENSCLMG00005018966)	smim20 (ENSCLMG00005018974) #15	RBPJ (ENSCLMG00005018975) #16	CCKAR (ENSCLMG00005019129) #17	tbc1d19 (ENSCLMG00005019133) #18	STIM2 (ENSCLMG00005019259) #20	PCDH7 (ENSCLMG00005019408) #22	ENSCLMG00005019409 #22	ENSCLMG00005019410	DTHD1 (ENSCLMG00005019411) #25	NWD2 (ENSCLMG00005019412) #26	ENSCLMG00005019413	rell1 (ENSCLMG00005019414) #28	per1b (ENSCLMG00005019416)	pcolceb (ENSCLMG00005019418)	ENSCLMG00005019427	ENSCLMG00005019428	cnpy4 (ENSCLMG00005019458)	ENSCLMG00005019459	ENSCLMG00005019461	ENSCLMG00005019486	ponzr1 (ENSCLMG00005019487)	ENSCLMG00005019488
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
European seabass	MODERN SPECIES	16	ENSDLAG00005034522	fis1 (ENSDLAG00005006210)	ENSDLAG00005006209	dnajc3b (ENSDLAG00005022741)	ENSDLAG00005030688	ENSDLAG00005017867	tnfsf12 (ENSDLAG00005017683)	sat2a.2 (ENSDLAG00005017678)	ENSDLAG00005027977	smim20 (ENSDLAG00005032754) #15	ENSDLAG00005017600	RBPJ (ENSDLAG00005034416) #16	ENSDLAG00005017064	tbc1d19 (ENSDLAG00005016902) #18	STIM2 (ENSDLAG00005016523) #20	PCDH7 (ENSDLAG00005016495) #22	ENSDLAG00005015900	DTHD1 (ENSDLAG00005015828) #25	NWD2 (ENSDLAG00005015809) #26	ENSDLAG00005015789	RELL1 (ENSDLAG00005031395) #28	ENSDLAG00005015065	ENSDLAG00005015012	ENSDLAG00005015002	ENSDLAG00005014985	ENSDLAG00005014943	cnpy4 (ENSDLAG00005014925)	ENSDLAG00005014916	ENSDLAG00005029560	ENSDLAG00005014891	ponzr1 (ENSDLAG00005030607)
Large yellow croaker	MODERN SPECIES	485	ENSLCRG00005005982	ENSLCRG00005005967	rragd (ENSLCRG00005005923)	hspa14 (ENSLCRG00005005911)	b2m (ENSLCRG00005005905)	ENSLCRG00005005884	tmbim4 (ENSLCRG00005005857)	ENSLCRG00005005840	lemd3 (ENSLCRG00005005794)	ENSLCRG00005005756	msrb3 (ENSLCRG00005005720)	hmga2 (ENSLCRG00005005705)	ENSLCRG00005005685	tbc1d19 (ENSLCRG00005005530) #18	STIM2 (ENSLCRG00005004654) #20	PCDH7 (ENSLCRG00005004520) #22	ENSLCRG00005004504	ENSLCRG00005003460	DTHD1 (ENSLCRG00005003157) #25	NWD2 (ENSLCRG00005009968) #26	rell1 (ENSLCRG00005009951) #28	per1b (ENSLCRG00005009853)	pcolceb (ENSLCRG00005009731)	ENSLCRG00005009723	ENSLCRG00005009713	ENSLCRG00005009701	ENSLCRG00005009619	cnpy4 (ENSLCRG00005009556)	ENSLCRG00005009516	ENSLCRG00005009490	ENSLCRG00005009470
Gilthead seabream	MODERN SPECIES	1	dnajc3b (ENSSAUG00010006545)	naa38 (ENSSAUG00010007644)	ENSSAUG00010007676	tnfsf12 (ENSSAUG00010011877)	ENSSAUG00010011880	ENSSAUG00010011887	ENSSAUG00010011889	ENSSAUG00010011893	ENSSAUG00010011894	MAN2B2 (ENSSAUG00010011900)	smim20 (ENSSAUG00010012641) #15	RBPJ (ENSSAUG00010012659) #16	CCKAR (ENSSAUG00010013172) #17	tbc1d19 (ENSSAUG00010013174) #18	STIM2 (ENSSAUG00010013199) #20	PCDH7 (ENSSAUG00010013542) #22	ENSSAUG00010013551	DTHD1 (ENSSAUG00010013966) #25	NWD2 (ENSSAUG00010013971) #26	ENSSAUG00010013977	rell1 (ENSSAUG00010013981) #28	per1b (ENSSAUG00010014015)	pcolceb (ENSSAUG00010014136)	ENSSAUG00010014143	ENSSAUG00010014145	ENSSAUG00010014146	cnpy4 (ENSSAUG00010014149)	ENSSAUG00010014150	ENSSAUG00010014151	ENSSAUG00010014153	ponzr1 (ENSSAUG00010014155)
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263518.C	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586
Aplocheiloidei	ANCESTRAL SPECIES	68	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177727	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT00980000201267	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153648.b #26	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535	ENSGT00950000182903.a.b.i.d
Mangrove rivulus	MODERN SPECIES	90															ENSKMAG00000010491	PCDH7 (ENSKMAG00000010473) #22	ENSKMAG00000010459	ENSKMAG00000010353	NWD2 (ENSKMAG00000010301) #26	ENSKMAG00000010282	ENSKMAG00000010256	ENSKMAG00000010244	RELL1 (ENSKMAG00000010228) #28	per1b (ENSKMAG00000010097)	ENSKMAG00000010063	ENSKMAG00000010053	ENSKMAG00000010035	cnpy4 (ENSKMAG00000010015)	ENSKMAG00000009983	ENSKMAG00000009965	ENSKMAG00000009927
Turquoise killifish	MODERN SPECIES	1613	tnfsf12 (ENSNFUG00015000794)	ENSNFUG00015000798	ENSNFUG00015000805	MAN2B2 (ENSNFUG00015000817)	smim20 (ENSNFUG00015000856) #15	ENSNFUG00015000857	ENSNFUG00015000859	RBPJ (ENSNFUG00015000880) #16	CCKAR (ENSNFUG00015000941) #17	TBC1D19 (ENSNFUG00015000949) #18	ENSNFUG00015000962	ENSNFUG00015000964	ENSNFUG00015000968	ENSNFUG00015000969	ENSNFUG00015000971	PCDH7B (ENSNFUG00015000982) #22	ENSNFUG00015000990	NWD2 (ENSNFUG00015000999) #26	RELL1 (ENSNFUG00015001013) #28	per1b (ENSNFUG00015001033)	pcolceb (ENSNFUG00015001053)	OLA.1520 (ENSNFUG00015001067)	ENSNFUG00015001074	CNPY4 (ENSNFUG00015001081)	ENSNFUG00015001089	ENSNFUG00015001098	ENSNFUG00015001102	ENSNFUG00015001106	si:ch73-335l21.2 (ENSNFUG00015001110)	si:ch73-335l21.4 (ENSNFUG00015001113)	ENSNFUG00015001118
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.n	ENSGT00940000163927.a.a.m
NAME_4	ANCESTRAL SPECIES	118	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169
Mummichog	MODERN SPECIES	2242	dnajc3b (ENSFHEG00000017081)	naa38 (ENSFHEG00000017032)	ENSFHEG00000017015	ENSFHEG00000017002	ENSFHEG00000016975	tnfsf12 (ENSFHEG00000016957)	sat2a.2 (ENSFHEG00000016933)	ENSFHEG00000016926	ENSFHEG00000016911	MAN2B2 (ENSFHEG00000000427)	smim20 (ENSFHEG00000016834) #15	RBPJ (ENSFHEG00000016827) #16	CCKAR (ENSFHEG00000016778) #17	tbc1d19 (ENSFHEG00000016753) #18	STIM2 (ENSFHEG00000016700) #20	PCDH7 (ENSFHEG00000016689) #22	ENSFHEG00000016670	ENSFHEG00000016525 #25
Sheepshead minnow	MODERN SPECIES	291														tbc1d19 (ENSCVAG00000022429) #18	STIM2 (ENSCVAG00000022442) #20	PCDH7 (ENSCVAG00000022469) #22
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.n	ENSGT00940000163927.a.a.m	ENSGT01020000230586
Poecilia	ANCESTRAL SPECIES	32	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.n	ENSGT00940000163927.a.a.m	ENSGT01020000230586
NAME_6	ANCESTRAL SPECIES	53	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000157221.w.b #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.n	ENSGT00940000163927.a.a.m
Amazon molly	MODERN SPECIES	293	fis1 (ENSPFOG00000012822)	cldn15a (ENSPFOG00000012792)	dnajc3b (ENSPFOG00000012678)	naa38 (ENSPFOG00000012670)	CHD3 (ENSPFOG00000012464)	tnfsf12 (ENSPFOG00000012440)	sat2a.2 (ENSPFOG00000012407)	ENSPFOG00000012401	MAN2B2 (ENSPFOG00000012127)	ENSPFOG00000024816	RBPJ (ENSPFOG00000012004) #16	CCKAR (ENSPFOG00000011947) #17	tbc1d19 (ENSPFOG00000011796) #18	STIM2 (ENSPFOG00000011706) #20	ENSPFOG00000024745 #22	PCDH7 (ENSPFOG00000011689) #22	ENSPFOG00000011485	ENSPFOG00000011416 #25	NWD2 (ENSPFOG00000011365) #26	ENSPFOG00000020015	RELL1 (ENSPFOG00000022963) #28	per1b (ENSPFOG00000011185)	pcolceb (ENSPFOG00000011106)	ENSPFOG00000011090	ENSPFOG00000010952	cnpy4 (ENSPFOG00000010908)	ENSPFOG00000010831	ENSPFOG00000010686	ponzr1 (ENSPFOG00000021825)	ponzr1 (ENSPFOG00000010662)	ENSPFOG00000010654
Sailfin molly	MODERN SPECIES	544																PCDH7 (ENSPLAG00000008901) #22
Guppy	MODERN SPECIES	448	fis1 (ENSPREG00000010749)	cldn15a (ENSPREG00000010908)	dnajc3b (ENSPREG00000010979)	naa38 (ENSPREG00000011017)	CHD3 (ENSPREG00000011044)	tnfsf12 (ENSPREG00000011108)	sat2a.2 (ENSPREG00000011128)	ENSPREG00000011146	ENSPREG00000011156	MAN2B2 (ENSPREG00000011170)	smim20 (ENSPREG00000011198) #15	RBPJ (ENSPREG00000011229) #16	CCKAR (ENSPREG00000011283) #17	tbc1d19 (ENSPREG00000011308) #18	STIM2 (ENSPREG00000011413) #20	PCDH7 (ENSPREG00000011447) #22	ENSPREG00000011489	ENSPREG00000011525 #25	NWD2 (ENSPREG00000011567) #26	ENSPREG00000011599	RELL1 (ENSPREG00000011610) #28	per1b (ENSPREG00000011641)	pcolceb (ENSPREG00000011709)	ENSPREG00000011735	ENSPREG00000011778	cnpy4 (ENSPREG00000011908)	ENSPREG00000011946	ENSPREG00000011984	ponzr1 (ENSPREG00000012038)	ponzr1 (ENSPREG00000012099)	ENSPREG00000012122
Platyfish	MODERN SPECIES	5	fis1 (ENSXMAG00000010702)	dnajc3b (ENSXMAG00000010671)	naa38 (ENSXMAG00000028369)	CHD3 (ENSXMAG00000016035)	ENSXMAG00000026617	tnfsf12 (ENSXMAG00000026597)	sat2a.2 (ENSXMAG00000029129)	ENSXMAG00000030071	ENSXMAG00000025997	MAN2B2 (ENSXMAG00000016108)	smim20 (ENSXMAG00000026331) #15	RBPJ (ENSXMAG00000009877) #16	CCKAR (ENSXMAG00000029692) #17	tbc1d19 (ENSXMAG00000009908) #18	STIM2 (ENSXMAG00000000500) #20	PCDH7 (ENSXMAG00000009948) #22	ENSXMAG00000029363	ENSXMAG00000015280	ENSXMAG00000023755	DTHD1 (ENSXMAG00000015296) #25	NWD2 (ENSXMAG00000029989) #26	ENSXMAG00000015305	RELL1 (ENSXMAG00000015308) #28	ENSXMAG00000026248	ENSXMAG00000030074	per1b (ENSXMAG00000015314)	pcolceb (ENSXMAG00000027902)	ENSXMAG00000015347	ENSXMAG00000015348	cnpy4 (ENSXMAG00000015373)	ENSXMAG00000026871
Oryzias	ANCESTRAL SPECIES	21	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b.g	ENSGT00940000156128.a	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535	ENSGT00950000182903.a.b.i
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b.g	ENSGT00940000156128.a	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535	ENSGT00950000182903.a.b.i
Indian medaka	MODERN SPECIES	19	cldn15a (ENSOMEG00000013766)	dnajc3b (ENSOMEG00000013742)	naa38 (ENSOMEG00000013718)	CHD3 (ENSOMEG00000013691)	ENSOMEG00000013644	tnfsf12 (ENSOMEG00000013629)	sat2a.2 (ENSOMEG00000013593)	ENSOMEG00000013572	ENSOMEG00000013560	MAN2B2 (ENSOMEG00000000344)	smim20 (ENSOMEG00000013502) #15	RBPJ (ENSOMEG00000013477) #16	CCKAR (ENSOMEG00000013399) #17	tbc1d19 (ENSOMEG00000013354) #18	STIM2 (ENSOMEG00000013261) #20	PCDH7 (ENSOMEG00000013194) #22	ENSOMEG00000013126	NWD2 (ENSOMEG00000012880) #26	ENSOMEG00000012805	rell1 (ENSOMEG00000012793) #28	per1b (ENSOMEG00000012728)	pcolceb (ENSOMEG00000012561)	ENSOMEG00000012530	ENSOMEG00000012512	ENSOMEG00000012500	ENSOMEG00000012453	ENSOMEG00000000821	ENSOMEG00000012137	ponzr1 (ENSOMEG00000012096)	ENSOMEG00000012075	acadvl (ENSOMEG00000012058)
Javanese ricefish	MODERN SPECIES	9	tm4sf5 (ENSOJAG00000005639)	fis1 (ENSOJAG00000005646)	cldn15a (ENSOJAG00000005664)	dnajc3b (ENSOJAG00000005698)	naa38 (ENSOJAG00000005871)	tnfsf12 (ENSOJAG00000009415)	sat2a.2 (ENSOJAG00000009427)	ENSOJAG00000009444	MAN2B2 (ENSOJAG00000009488)	smim20 (ENSOJAG00000009939) #15	RBPJ (ENSOJAG00000009983) #16	CCKAR (ENSOJAG00000010271) #17	tbc1d19 (ENSOJAG00000010293) #18	STIM2 (ENSOJAG00000010393) #20	ENSOJAG00000010640	PCDH7 (ENSOJAG00000010737) #22	ENSOJAG00000010767	ENSOJAG00000010832	ENSOJAG00000011455	ENSOJAG00000011466	NWD2 (ENSOJAG00000011479) #26	ENSOJAG00000011485	rell1 (ENSOJAG00000011495) #28	per1b (ENSOJAG00000011505)	pcolceb (ENSOJAG00000011565)	ENSOJAG00000010485	ENSOJAG00000010497	ENSOJAG00000010619	ENSOJAG00000010647	ponzr1 (ENSOJAG00000010731)	ENSOJAG00000010740
Oryzias_a	ANCESTRAL SPECIES	27	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00940000177834	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000165960.b.g	ENSGT00940000156128.a	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316.c	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a	ENSGT01020000230586	ENSGT00940000158535	ENSGT00950000182903.a.b.i
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000030390	tnfsf12 (ENSORLG00000022957)	sat2a.2 (ENSORLG00000023069)	ENSORLG00000027376	ENSORLG00000028776	MAN2B2 (ENSORLG00000007017)	smim20 (ENSORLG00000024014) #15	RBPJ (ENSORLG00000006995) #16	CCKAR (ENSORLG00000006989) #17	tbc1d19 (ENSORLG00000028729) #18	STIM2 (ENSORLG00000023978) #20	ENSORLG00000028007	ENSORLG00000024335	ENSORLG00000025772	ENSORLG00000029033	PCDH7 (ENSORLG00000006964) #22	ENSORLG00000026395	NWD2 (ENSORLG00000023423) #26	ENSORLG00000023698	RELL1 (ENSORLG00000006940) #28	per1b (ENSORLG00000006929)	pcolceb (ENSORLG00000030017)	ENSORLG00000006910	ENSORLG00000006903	ENSORLG00000006875	ENSORLG00000006869	ENSORLG00000026979	ENSORLG00000006846	ponzr1 (ENSORLG00000028811)	ENSORLG00000006827	acadvl (ENSORLG00000006819)
Chinese medaka	MODERN SPECIES	521																PCDH7 (ENSOSIG00000004552) #22
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT01100000263518.C	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT01030000234567.B.a.b.a.a	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000157221.x #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000157221.x #22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000157221.x #22
Clown anemonefish	MODERN SPECIES	54																PCDH7 (ENSAOCG00000018960) #22
Orange clownfish	MODERN SPECIES	15	tm4sf5 (ENSAPEG00000006615)	mettl3 (ENSAPEG00000006642)	si:dkey-85k7.7 (ENSAPEG00000006695)	ttc5 (ENSAPEG00000006708)	CCNB1IP1 (ENSAPEG00000006723)	ENSAPEG00000006751	slc7a7 (ENSAPEG00000006777)	oxa1l (ENSAPEG00000006839)	ENSAPEG00000006853	ENSAPEG00000006898	ENSAPEG00000006920	ENSAPEG00000006929	ENSAPEG00000006961	ENSAPEG00000006983	ENSAPEG00000006998	PCDH7 (ENSAPEG00000007051) #22	ENSAPEG00000007085	ENSAPEG00000007143	DTHD1 (ENSAPEG00000007214) #25	ENSAPEG00000007278	NWD2 (ENSAPEG00000007295) #26	ENSAPEG00000007335	rell1 (ENSAPEG00000007348) #28	ENSAPEG00000007367	per1b (ENSAPEG00000007394)	pcolceb (ENSAPEG00000007427)	ENSAPEG00000007464	ENSAPEG00000007474	ENSAPEG00000007498	zpax4 (ENSAPEG00000007523)	ENSAPEG00000007614
Spiny chromis	MODERN SPECIES	105																PCDH7 (ENSAPOG00000007155) #22
Bicolor damselfish	MODERN SPECIES	1251																PCDH7 (ENSSPAG00000001881) #22
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT01100000263518.C	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b	ENSGT00940000156128.a	ENSGT00390000014072.B	ENSGT00940000166316	ENSGT00940000153491.b.b.b	ENSGT00940000163927.a.a.r	ENSGT00940000163927.a.a.q.b.a.a.a.a
Midas cichlid	MODERN SPECIES	479																PCDH7 (ENSACIG00000016777) #22	ENSACIG00000016820	DTHD1 (ENSACIG00000016987) #25	NWD2 (ENSACIG00000017012) #26	zgc:194930 (ENSACIG00000017028)	rell1 (ENSACIG00000017035) #28	per1b (ENSACIG00000017049)	pcolceb (ENSACIG00000017089)	ponzr1 (ENSACIG00000017143)	ponzr1 (ENSACIG00000017156)	ENSACIG00000017181	ENSACIG00000017224	ENSACIG00000017424	ponzr1 (ENSACIG00000017437)
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b.i.b	ENSGT00930000151033	ENSGT00940000161268	ENSGT00940000154035.a	ENSGT00940000159866	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b.e.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.a.a.a	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00940000174987	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000165960.b.i.b	ENSGT00940000163927.a.a.q.b.a.b.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.a	ENSGT00940000163927.a.a.q.b.b	ENSGT00940000165960.b.i.a
Lyretail cichlid	MODERN SPECIES	372	naa38 (ENSNBRG00000000619)	CHD3 (ENSNBRG00000000636)	tnfsf12 (ENSNBRG00000000738)	ENSNBRG00000000769	ENSNBRG00000000789	ENSNBRG00000000801	MAN2B2 (ENSNBRG00000000832)	smim20 (ENSNBRG00000000899) #15	RBPJ (ENSNBRG00000000915) #16	CCKAR (ENSNBRG00000000971) #17	ENSNBRG00000001001	tbc1d19 (ENSNBRG00000001017) #18	STIM2 (ENSNBRG00000001092) #20	ENSNBRG00000001349	ENSNBRG00000001653 #22	PCDH7 (ENSNBRG00000001672) #22	ENSNBRG00000001686	ENSNBRG00000001756 #25	NWD2 (ENSNBRG00000001779) #26	ENSNBRG00000001820	rell1 (ENSNBRG00000001832) #28	ENSNBRG00000001854	per1b (ENSNBRG00000001871)	pcolceb (ENSNBRG00000001936)	ENSNBRG00000001941	ponzr1 (ENSNBRG00000001960)	ENSNBRG00000001967	ponzr1 (ENSNBRG00000001976)	POLR2A (ENSNBRG00000002005)	ENSNBRG00000002092	NEURL4 (ENSNBRG00000002132)
Haplochromini	ANCESTRAL SPECIES	31	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001.p	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.a.a.a	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000163927.a.a.q.b.a.b.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.b.a	ENSGT00940000163927.a.a.q.b.a.b.a.a.a	ENSGT00940000163927.a.a.q.b.b	ENSGT00940000165960.b.i.a	ENSGT00990000204615	ENSGT00940000165960.b.i.b
Burton s mouthbrooder	MODERN SPECIES	343	dnajc3b (ENSHBUG00000019906)	naa38 (ENSHBUG00000019918)	CHD3 (ENSHBUG00000019956)	tnfsf12 (ENSHBUG00000019999)	ENSHBUG00000020033	ENSHBUG00000020044	ENSHBUG00000020060	ENSHBUG00000020080	MAN2B2 (ENSHBUG00000020161)	RBPJ (ENSHBUG00000020197) #16	CCKAR (ENSHBUG00000020229) #17	tbc1d19 (ENSHBUG00000020340) #18	STIM2 (ENSHBUG00000020356) #20	ENSHBUG00000020374	ENSHBUG00000020684	PCDH7 (ENSHBUG00000020724) #22	ENSHBUG00000020742	DTHD1 (ENSHBUG00000020754) #25	NWD2 (ENSHBUG00000020786) #26	ENSHBUG00000020805	rell1 (ENSHBUG00000020820) #28	ENSHBUG00000020826	per1b (ENSHBUG00000020875)	pcolceb (ENSHBUG00000020890)	ENSHBUG00000020904	ENSHBUG00000020914	ENSHBUG00000020919	ponzr1 (ENSHBUG00000020930)	ENSHBUG00000020961
Haplochromini_A	ANCESTRAL SPECIES	35	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001.p	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.b	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000163927.a.a.q.b.a.b.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.b.a	ENSGT00940000163927.a.a.q.b.a.b.a.a.a	ENSGT00940000163927.a.a.q.b.b	ENSGT00940000165960.b.i.a	ENSGT00940000165960.b.i.b
P. nyererei	MODERN SPECIES	446	dnajc3b (ENSPNYG00000021428)	naa38 (ENSPNYG00000021415)	ENSPNYG00000021398	ENSPNYG00000021369	ENSPNYG00000021353	tnfsf12 (ENSPNYG00000021338)	ENSPNYG00000021327	ENSPNYG00000021316	ENSPNYG00000021298	smim20 (ENSPNYG00000021286) #15	MAN2B2 (ENSPNYG00000021248)	RBPJ (ENSPNYG00000021202) #16	CCKAR (ENSPNYG00000021173) #17	tbc1d19 (ENSPNYG00000021123) #18	STIM2 (ENSPNYG00000021089) #20	PCDH7 (ENSPNYG00000021073) #22
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00390000000592	ENSGT00940000165100.b	ENSGT00940000165987	ENSGT00390000018418	ENSGT00940000158001.p	ENSGT00510000050706	ENSGT00950000183121.a.c.b.r.a.a.a	ENSGT00800000125278	ENSGT00650000094881	ENSGT01030000234638.b.a.b	ENSGT00940000177623	ENSGT00390000005197.a.bb.b #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT01010000222552	ENSGT00940000159709 #28	ENSGT00940000164656.b.b.a.a.a.a.a.a	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00990000204615	ENSGT00940000163927.a.a.q.b.a.b.a.b	ENSGT00940000163927.a.a.q.b.a.b.a.a.b.a	ENSGT00940000163927.a.a.q.b.a.b.a.a.a	ENSGT00940000163927.a.a.q.b.b	ENSGT00940000165960.b.i.a	ENSGT00940000165960.b.i.b
Eastern happy	MODERN SPECIES	15	naa38 (ENSACLG00000009549)	CHD3 (ENSACLG00000009222)	tnfsf12 (ENSACLG00000009209)	ENSACLG00000009101	ENSACLG00000009082	ENSACLG00000009058	ENSACLG00000009047	MAN2B2 (ENSACLG00000008986)	RBPJ (ENSACLG00000008949) #16	CCKAR (ENSACLG00000008928) #17	tbc1d19 (ENSACLG00000008818) #18	STIM2 (ENSACLG00000008804) #20	ENSACLG00000008789	ENSACLG00000008786	ENSACLG00000008179	PCDH7 (ENSACLG00000008168) #22	ENSACLG00000008159	ENSACLG00000007604	ENSACLG00000007302	ENSACLG00000007249	DTHD1 (ENSACLG00000007037) #25	ENSACLG00000007032	NWD2 (ENSACLG00000007021) #26	ENSACLG00000007009	rell1 (ENSACLG00000007003) #28	ENSACLG00000006997	ENSACLG00000006994	ENSACLG00000006988	per1b (ENSACLG00000006908)	pcolceb (ENSACLG00000006893)	ENSACLG00000006883
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1106	fis1 (ENSMZEG00005021250)	cldn15a (ENSMZEG00005021253)	dnajc3b (ENSMZEG00005021259)	naa38 (ENSMZEG00005021265)	CHD3 (ENSMZEG00005021272)	tnfsf12 (ENSMZEG00005021293)	ENSMZEG00005021296	ENSMZEG00005021298	ENSMZEG00005021301	MAN2B2 (ENSMZEG00005021307)	ENSMZEG00005021313	RBPJ (ENSMZEG00005021315) #16	CCKAR (ENSMZEG00005021319) #17	tbc1d19 (ENSMZEG00005021326) #18	STIM2 (ENSMZEG00005021340) #20	PCDH7 (ENSMZEG00005021344) #22	ENSMZEG00005021346	ENSMZEG00005021352	DTHD1 (ENSMZEG00005021362) #25	NWD2 (ENSMZEG00005021371) #26	ENSMZEG00005021375	rell1 (ENSMZEG00005021377) #28	ENSMZEG00005021378	per1b (ENSMZEG00005021382)	pcolceb (ENSMZEG00005021388)	ENSMZEG00005021391	ENSMZEG00005021395	ENSMZEG00005021399	ENSMZEG00005021401	ENSMZEG00005021403	ENSMZEG00005021404
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	119	sh3bp5la (ENSMZEG00005027750)	mgat1a (ENSMZEG00005027752)	rnf183 (ENSMZEG00005027753)	dhx16 (ENSMZEG00005027755)	ppt2a.2 (ENSMZEG00005027757)	ENSMZEG00005027758	ENSMZEG00005027759	ENSMZEG00005027760	zp3d.2 (ENSMZEG00005027761)	fli1rs (ENSMZEG00005027762)	etsrp (ENSMZEG00005027763)	ENSMZEG00005027765	pycard (ENSMZEG00005027767)	ENSMZEG00005027769	ENSMZEG00005027770	ENSMZEG00005027771 #22	ENSMZEG00005027772	ENSMZEG00005027774	ENSMZEG00005027775	ENSMZEG00005027776	ENSMZEG00005027777
Zebra mbuna	MODERN SPECIES	220							ENSMZEG00005009852	ENSMZEG00005009858	ENSMZEG00005009863	ENSMZEG00005009868	ENSMZEG00005009886	ENSMZEG00005009901	ENSMZEG00005009918	ENSMZEG00005009935	ENSMZEG00005009943	ENSMZEG00005009946 #22
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	15	cldn15a (ENSONIG00000009315)	dnajc3b (ENSONIG00000009308)	naa38 (ENSONIG00000031327)	CHD3 (ENSONIG00000009292)	tnfsf12 (ENSONIG00000009291)	ENSONIG00000029694	ENSONIG00000030544	ENSONIG00000024604	MAN2B2 (ENSONIG00000009282)	smim20 (ENSONIG00000036419) #15	RBPJ (ENSONIG00000009281) #16	CCKAR (ENSONIG00000009279) #17	tbc1d19 (ENSONIG00000009276) #18	STIM2 (ENSONIG00000009272) #20	ENSONIG00000032813	PCDH7 (ENSONIG00000009270) #22	ENSONIG00000009262	DTHD1 (ENSONIG00000009259) #25	NWD2 (ENSONIG00000034757) #26	ENSONIG00000021452	rell1 (ENSONIG00000009256) #28	ENSONIG00000031019	per1b (ENSONIG00000009248)	pcolceb (ENSONIG00000009245)	ENSONIG00000035738	ENSONIG00000004847	ENSONIG00000012455	ENSONIG00000004853	ENSONIG00000009244	ENSONIG00000009239	ENSONIG00000041990
Nile tilapia	MODERN SPECIES	2	tnfb (ENSONIG00000002250)	GABBR1 (ENSONIG00000002243)	ENSONIG00000034000	sh3bp5la (ENSONIG00000002241)	mgat1a (ENSONIG00000002240)	rnf183 (ENSONIG00000039907)	dhx16 (ENSONIG00000002234)	ppt2a.2 (ENSONIG00000002230)	ENSONIG00000022720	ENSONIG00000002229	ENSONIG00000037771	zp3d.2 (ENSONIG00000002226)	fli1rs (ENSONIG00000037337)	etsrp (ENSONIG00000002217)	pycard (ENSONIG00000002216)	ENSONIG00000034594 #22	ENSONIG00000027994	ENSONIG00000033267	ENSONIG00000027559	ENSONIG00000027527	ENSONIG00000028439	ENSONIG00000042551	ENSONIG00000038047	ENSONIG00000002144	nudt17 (ENSONIG00000002142)	ENSONIG00000002132	ENSONIG00000033487	dcst2 (ENSONIG00000002087)	ENSONIG00000030588	ENSONIG00000038318	ENSONIG00000002083
Protacanthopterygii	ANCESTRAL SPECIES	57	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT01100000263482.F	ENSGT00940000157250	ENSGT00390000018549	ENSGT00940000162871	ENSGT00940000177059	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00990000208579	ENSGT00940000159709 #28	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00970000193685	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194
Northern pike	MODERN SPECIES	23	grpel1 (ENSELUG00000011256)	tada2b (ENSELUG00000011240)	ccdc96 (ENSELUG00000031533)	TBC1D14 (ENSELUG00000011194)	kiaa0232 (ENSELUG00000011174)	s100p (ENSELUG00000011155)	ENSELUG00000011060	MAN2B2 (ENSELUG00000011118)	smim20 (ENSELUG00000031844) #15	rbpjb (ENSELUG00000011029) #16	CCKAR (ENSELUG00000001082) #17	tbc1d19 (ENSELUG00000010951) #18	STIM2 (ENSELUG00000010866) #20	ENSELUG00000034124	ENSELUG00000010753	PCDH7 (ENSELUG00000010732) #22	ENSELUG00000024789	ENSELUG00000000384	DTHD1 (ENSELUG00000010593) #25	NWD2 (ENSELUG00000010572) #26	ENSELUG00000032348	rell1 (ENSELUG00000010541) #28	per1b (ENSELUG00000000378)	pcolceb (ENSELUG00000010467)	PAQR9 (ENSELUG00000010428)	ENSELUG00000010419	ENSELUG00000000374	ENSELUG00000026055	ENSELUG00000010357	ADAM33 (ENSELUG00000010309)	rwdd (ENSELUG00000001520)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	189	ENSGT00390000005589.a.a.w	ENSGT00940000157318.a	ENSGT00940000154521.A	ENSGT01030000234940.g	ENSGT00990000210738	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT00940000177059	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb.e.b #16	ENSGT01100000263563.c.b.d #17	ENSGT00390000000214.a.b.k.b #20	ENSGT00970000198440	ENSGT00940000157221.x.i.a #22	ENSGT00940000167169.d	ENSGT00940000153648.b.m #26	ENSGT00990000208579.a	ENSGT00940000159709 #28	ENSGT00940000159217.n	ENSGT00940000159264.f.c.a	ENSGT00940000159264.f.d	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804.d	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194.p
Salmoninae_a	ANCESTRAL SPECIES	101	ENSGT00940000163421.a.d.a.b.a	ENSGT00940000163421.a.d.a.b.b	ENSGT00940000159150.ab	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT00940000177059.a	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb.e.b #16	ENSGT01100000263563.c.b.d #17	ENSGT00390000000214.a.b.k.b #20	ENSGT01100000263473.a.b.h.b.k.a	ENSGT00940000157221.x.i.a #22	ENSGT00940000167169.d	ENSGT00940000153648.b.m #26	ENSGT00990000208579.a	ENSGT00940000159709 #28	ENSGT00940000159217.n	ENSGT00940000159264.f.c.a	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804.d	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194.p	ENSGT00940000169954
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000163421.a.d.a.a.f.b	ENSGT00940000159150.ab	ENSGT00940000155010.a	ENSGT01100000263482.F	ENSGT00940000157250.f	ENSGT00390000018549.l	ENSGT00940000162871	ENSGT00940000177059.a	ENSGT01030000234638.b.a.b.c	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb.e.b #16	ENSGT01100000263563.c.b.d #17	ENSGT00390000000214.a.b.k.b #20	ENSGT01100000263473.a.b.h.b.k.b.a.b.a	ENSGT01100000263473.a.b.h.b.k.a	ENSGT00940000157221.x.i.a #22	ENSGT00940000167169.d	ENSGT00940000153648.b.m #26	ENSGT00990000208579.a	ENSGT00940000159709 #28	ENSGT00940000159217.n	ENSGT00940000159264.f.c.a	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT01030000235360	ENSGT00940000166804.d	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000167021	ENSGT00940000158194.p
Atlantic salmon	MODERN SPECIES	26	man2b2 (ENSSSAG00000004837)	smim20 (ENSSSAG00000005897) #15	CCKAR (ENSSSAG00000003097) #17	ENSSSAG00000003166 #16	STIM2 (ENSSSAG00000040955) #20	ENSSSAG00000100672	ENSSSAG00000056676	ENSSSAG00000056685	ENSSSAG00000003042	ENSSSAG00000003074	ENSSSAG00000082471	ENSSSAG00000115209	ENSSSAG00000114796	ENSSSAG00000090682	ENSSSAG00000113718	PCDH7 (ENSSSAG00000003088) #22	ENSSSAG00000092620	ENSSSAG00000111088	NWD2 (ENSSSAG00000002877) #26	ENSSSAG00000088480	RELL1 (ENSSSAG00000105977) #28	per1b (ENSSSAG00000002804)	ENSSSAG00000099848	ENSSSAG00000114692	ENSSSAG00000002818	ENSSSAG00000002828	lrch4 (ENSSSAG00000002854)	ENSSSAG00000002903	rwdd (ENSSSAG00000002920)	ENSSSAG00000002955	ing2 (ENSSSAG00000002986)
River trout	MODERN SPECIES	38	ENSSTUG00000003406	MAN2B2 (ENSSTUG00000003373)	ENSSTUG00000003357	MAN2B2 (ENSSTUG00000002807)	smim20 (ENSSTUG00000002761) #15	rbpjb (ENSSTUG00000002520) #16	CCKAR (ENSSTUG00000002506) #17	ENSSTUG00000002494	STIM2 (ENSSTUG00000002272) #20	ENSSTUG00000002257	ENSSTUG00000002240	ENSSTUG00000002239	ENSSTUG00000002236	ENSSTUG00000002227	ENSSTUG00000002176	PCDH7 (ENSSTUG00000002164) #22	ENSSTUG00000002154	ENSSTUG00000002153	ENSSTUG00000001897	NWD2 (ENSSTUG00000001854) #26	ENSSTUG00000001833	rell1 (ENSSTUG00000001819) #28	per1b (ENSSTUG00000001806)	pcolceb (ENSSTUG00000001790)	PAQR9 (ENSSTUG00000001786)	ENSSTUG00000001768	ADAM33 (ENSSTUG00000001744)	rwdd (ENSSTUG00000001738)	ENSSTUG00000001688	ing2 (ENSSTUG00000001677)	ENSSTUG00000001662
Oncorhynchus	ANCESTRAL SPECIES	363															ENSGT01100000263473.a.b.h.b.k.a	ENSGT00940000157221.x.i.a #22	ENSGT00940000167169.d
Oncorhynchus_a	ANCESTRAL SPECIES	819															ENSGT01100000263473.a.b.h.b.k.b.b	ENSGT00940000157221.x.i.a #22
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	6	DCTN6 (ENSOTSG00005003016)	SGCZ (ENSOTSG00005003004)	ENSOTSG00005002986	ENSOTSG00005002968	cldnd1a (ENSOTSG00005002963)	NWD2 (ENSOTSG00005002957) #26	ENSOTSG00005002954	rell1 (ENSOTSG00005002947) #28	per1b (ENSOTSG00005002942)	PAQR9 (ENSOTSG00005002938)	ENSOTSG00005002935	ENSOTSG00005002924	acadl (ENSOTSG00005002543)	ENSOTSG00005002402	ENSOTSG00005001940	PCDH7 (ENSOTSG00005041798) #22	ENSOTSG00005041795	cfhl4 (ENSOTSG00005041793)	aspm (ENSOTSG00005041790)	crb1 (ENSOTSG00005041787)	ENSOTSG00005041786	ENSOTSG00005041783	smim20 (ENSOTSG00005041780) #15	MAN2B2 (ENSOTSG00005040823)	S100P (ENSOTSG00005040816)	kiaa0232 (ENSOTSG00005040815)	TBC1D14 (ENSOTSG00005040708)	ENSOTSG00005040698	ENSOTSG00005040692	ENSOTSG00005040690	ccdc96 (ENSOTSG00005040689)
Chinook salmon	MODERN SPECIES	2963															ENSOTSG00005033387	PCDH7 (ENSOTSG00005033389) #22
Coho salmon	MODERN SPECIES	29	ENSOKIG00005025498	TBC1D14 (ENSOKIG00005025524)	kiaa0232 (ENSOKIG00005025740)	S100P (ENSOKIG00005025743)	ENSOKIG00005025758	MAN2B2 (ENSOKIG00005025814)	ENSOKIG00005026694	smim20 (ENSOKIG00005026709) #15	rbpjb (ENSOKIG00005026727) #16	CCKAR (ENSOKIG00005026800) #17	STIM2 (ENSOKIG00005026826) #20	ENSOKIG00005026882	ENSOKIG00005026896	ENSOKIG00005026916	ENSOKIG00005026929	PCDH7 (ENSOKIG00005026956) #22	ENSOKIG00005027006	ENSOKIG00005027014	ENSOKIG00005027016	ENSOKIG00005027027	ENSOKIG00005027038	ENSOKIG00005027054	NWD2 (ENSOKIG00005027071) #26	ENSOKIG00005027094	ENSOKIG00005027125	rell1 (ENSOKIG00005027141) #28	per1b (ENSOKIG00005027152)	ENSOKIG00005027177	ENSOKIG00005027206	PAQR9 (ENSOKIG00005027285)	FBXO24 (ENSOKIG00005027301)
Rainbow trout	MODERN SPECIES	13	KIAA0232 (ENSOMYG00000022849)	S100P (ENSOMYG00000022859)	ENSOMYG00000022870	MAN2B2 (ENSOMYG00000023014)	SMIM20 (ENSOMYG00000023589) #15	ENSOMYG00000023659 #16	CCKAR (ENSOMYG00000023749) #17	STIM2 (ENSOMYG00000023950) #20	ENSOMYG00000048575	ENSOMYG00000025093	ENSOMYG00000049298	ENSOMYG00000058749	ENSOMYG00000058014	ENSOMYG00000054841	ENSOMYG00000025148	PCDH7 (ENSOMYG00000025183) #22	ENSOMYG00000025295	ENSOMYG00000075927	NWD2 (ENSOMYG00000025344) #26	ENSOMYG00000068557	ENSOMYG00000050026	RELL1 (ENSOMYG00000077028) #28	ENSOMYG00000060756	ENSOMYG00000050854	per1b (ENSOMYG00000025403)	ENSOMYG00000071411	ENSOMYG00000052133	ENSOMYG00000059584	ENSOMYG00000062675	ENSOMYG00000065355	ENSOMYG00000075477
Huchen	MODERN SPECIES	3285																PCDH7 (ENSHHUG00000008258) #22
Salmoninae	ANCESTRAL SPECIES	336	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c #11	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT01100000263482.F	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #16	ENSGT01100000263563.c.b.c #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k.a #20	ENSGT00940000157221.x.i.b #22
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000153395.a.i	ENSGT00940000155475.h.i	ENSGT00390000012556.c #11	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #16	ENSGT01100000263563.c.b.c #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k.a #20	ENSGT00940000157221.x.i.b #22	ENSGT00940000153648.b.n #26	ENSGT00990000208579.b	ENSGT00980000201372	ENSGT00940000158194.o	ENSGT00600000085600.l	ENSGT00390000013368	ENSGT00510000047760.a	ENSGT00390000001189.b.i.d	ENSGT00390000007332.f #9	ENSGT01030000234532.B.e.a.a.a.b.d	ENSGT00390000008294.q.a.b	ENSGT00390000001376.ec	ENSGT00940000157910	ENSGT00940000159823.a
Salmo	ANCESTRAL SPECIES	18	ENSGT00390000012556.c #11	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000018895.a.m.a	ENSGT00390000005197.a.cb.e.a #16	ENSGT01100000263563.c.b.c #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k.a #20	ENSGT00990000211390	ENSGT00940000157221.x.i.b #22	ENSGT00940000165320	ENSGT00940000159817.jb.b	ENSGT00940000157424.m.b.b	ENSGT00510000047611.ub	ENSGT00390000012961.o	ENSGT00940000161147.c	ENSGT00940000156576.g	ENSGT00950000183144.A	ENSGT00390000000938.mb	ENSGT00940000161220	ENSGT00940000156432.b.a	ENSGT00390000016789.b	ENSGT00510000047925.d	ENSGT00940000166338	ENSGT00940000154174.fb.b.a
River trout	MODERN SPECIES	35	ABLIM2 (ENSSTUG00000030413)	AFAP1 (ENSSTUG00000030368)	ENSSTUG00000030361	SORCS2 (ENSSTUG00000029672)	grpel1 (ENSSTUG00000029638)	tada2b (ENSSTUG00000029631)	ENSSTUG00000029612	TBC1D14 (ENSSTUG00000027130)	kiaa0232 (ENSSTUG00000027072)	ENSSTUG00000027066	rbpjb (ENSSTUG00000026772) #16	CCKAR (ENSSTUG00000050267) #17	tbc1d19 (ENSSTUG00000050255) #18	STIM2 (ENSSTUG00000050244) #20	ENSSTUG00000050236	PCDH7 (ENSSTUG00000050235) #22	ENSSTUG00000050232	NWD2 (ENSSTUG00000050231) #26	ENSSTUG00000050228	ENSSTUG00000050227	ENSSTUG00000050225	ing2 (ENSSTUG00000050221)	ENSSTUG00000050219	slx1b (ENSSTUG00000050214)	zgc:112271 (ENSSTUG00000050210)	COL25A1 (ENSSTUG00000050163)	etnppl (ENSSTUG00000050147)	ostc (ENSSTUG00000050142)	rpl34 (ENSSTUG00000050137)	SLC24A2 (ENSSTUG00000050134)	sepsecs (ENSSTUG00000050125) #9
Atlantic salmon	MODERN SPECIES	9	SORCS2 (ENSSSAG00000049497)	GRPEL1 (ENSSSAG00000049102)	tada2b (ENSSSAG00000086629)	ENSSSAG00000049074	TBC1D14 (ENSSSAG00000043970)	KIAA0232 (ENSSSAG00000043817)	ENSSSAG00000092477	ENSSSAG00000043781	ENSSSAG00000083639	rbpjb (ENSSSAG00000041441) #16	CCKAR (ENSSSAG00000088509) #17	tbc1d19 (ENSSSAG00000041126) #18	STIM2 (ENSSSAG00000003054) #20	ENSSSAG00000103714	ENSSSAG00000040796	PCDH7 (ENSSSAG00000040782) #22	ENSSSAG00000084771	ENSSSAG00000101180	ENSSSAG00000108518	ENSSSAG00000004372	ENSSSAG00000006734	ENSSSAG00000002163	NWD2 (ENSSSAG00000093983) #26	ENSSSAG00000040871	ENSSSAG00000095767	ENSSSAG00000040930	ENSSSAG00000040901	ENSSSAG00000040942	ENSSSAG00000040949	ENSSSAG00000040970	ENSSSAG00000040985
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000155475.h.i	ENSGT00390000012556.c #11	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #16	ENSGT01100000263563.c.b.c #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k.a #20	ENSGT01000000220453.A	ENSGT00940000157221.x.i.b #22	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.a.a.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.a	ENSGT00940000153648.b.n #26	ENSGT00990000208579.b	ENSGT00980000201372	ENSGT00940000158194.o	ENSGT00600000085600.l	ENSGT00390000013368	ENSGT00510000047760.a	ENSGT00390000001189.b.i.d	ENSGT00390000007332.f #9	ENSGT01030000234532.B.e.a.a.a.b.d	ENSGT00390000008294.q.a.b	ENSGT00390000001376.ec	ENSGT00940000157910
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000155475.h.i	ENSGT00390000012556.c #11	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00950000183067.a.a.g	ENSGT01030000234563.b.a.a.k	ENSGT00390000005589.a.a.x	ENSGT00940000157318.b	ENSGT00990000210738.b	ENSGT00940000157250.e	ENSGT00390000018549.k	ENSGT00390000005197.a.cb.e.a #16	ENSGT01100000263563.c.b.c #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k.a #20	ENSGT01000000220453.A	ENSGT00940000157221.x.i.b #22	ENSGT00940000153582.a.m.a.a.b.b.b.a.b.a.a.b.a.a.a.a.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.a	ENSGT00940000153648.b.n #26	ENSGT00990000208579.b	ENSGT00940000158194.o	ENSGT00600000085600.l	ENSGT00390000013368	ENSGT00510000047760.a	ENSGT00390000001189.b.i.d	ENSGT00390000007332.f #9	ENSGT01030000234532.B.e.a.a.a.b.d	ENSGT00390000008294.q.a.b	ENSGT00390000001376.ec	ENSGT00940000157910	ENSGT00940000159823.a
Chinook salmon	MODERN SPECIES	1	zcchc4 (ENSOTSG00005033936) #11	ABLIM2 (ENSOTSG00005033937)	AFAP1 (ENSOTSG00005033946)	SORCS2 (ENSOTSG00005033948)	grpel1 (ENSOTSG00005033954)	tada2b (ENSOTSG00005033957)	ENSOTSG00005033959	TBC1D14 (ENSOTSG00005033971)	ENSOTSG00005000732	kiaa0232 (ENSOTSG00005001061)	rbpjb (ENSOTSG00005001100) #16	CCKAR (ENSOTSG00005001452) #17	tbc1d19 (ENSOTSG00005001461) #18	STIM2 (ENSOTSG00005001632) #20	ENSOTSG00005001636	PCDH7 (ENSOTSG00005001637) #22	ENSOTSG00005001641	ENSOTSG00005001643	ENSOTSG00005001644	ENSOTSG00005001647	NWD2 (ENSOTSG00005001652) #26	ENSOTSG00005001649	ing2 (ENSOTSG00005001653)	ENSOTSG00005001654	slx1b (ENSOTSG00005001656)	zgc:112271 (ENSOTSG00005001657)	ENSOTSG00005001659	sepsecs (ENSOTSG00005001660) #9	ENSOTSG00005001665	rpl34 (ENSOTSG00005001667)	ostc (ENSOTSG00005001680)
Coho salmon	MODERN SPECIES	7	AFAP1 (ENSOKIG00005043840)	SORCS2 (ENSOKIG00005043962)	GRPEL1 (ENSOKIG00005044114)	tada2b (ENSOKIG00005044130)	TBC1D14 (ENSOKIG00005044210)	KIAA0232 (ENSOKIG00005044699)	rbpjb (ENSOKIG00005044732) #16	CCKAR (ENSOKIG00005044891) #17	tbc1d19 (ENSOKIG00005044905) #18	STIM2 (ENSOKIG00005044980) #20	ENSOKIG00005045149	ENSOKIG00005045153	ENSOKIG00005045158	ENSOKIG00005045163	ENSOKIG00005045168	PCDH7 (ENSOKIG00005045176) #22	ENSOKIG00005045188	ENSOKIG00005045203	ENSOKIG00005045216	ENSOKIG00005045227	NWD2 (ENSOKIG00005045236) #26	ING2 (ENSOKIG00005045246)	ENSOKIG00005045258	slx1b (ENSOKIG00005045276)	zgc:112271 (ENSOKIG00005045289)	ENSOKIG00005045295	sepsecs (ENSOKIG00005045305) #9	ENSOKIG00005045321	rpl34 (ENSOKIG00005004273)	ETNPPL (ENSOKIG00005004367)	OSTC (ENSOKIG00005004558)
Rainbow trout	MODERN SPECIES	30	ABLIM2 (ENSOMYG00000009018)	AFAP1 (ENSOMYG00000076559)	SORCS2 (ENSOMYG00000009185)	grpel1 (ENSOMYG00000059030)	tada2b (ENSOMYG00000009315)	ENSOMYG00000076871	TBC1D14 (ENSOMYG00000009692)	kiaa0232 (ENSOMYG00000010844)	ENSOMYG00000010848	rbpjb (ENSOMYG00000010928) #16	CCKAR (ENSOMYG00000011008) #17	tbc1d19 (ENSOMYG00000011076) #18	STIM2 (ENSOMYG00000011343) #20	ENSOMYG00000072475	ENSOMYG00000011485	PCDH7 (ENSOMYG00000011494) #22	ENSOMYG00000058912	ENSOMYG00000011633	ENSOMYG00000064043	ENSOMYG00000055976	ENSOMYG00000039844	ENSOMYG00000011652	NWD2 (ENSOMYG00000011663) #26	ENSOMYG00000011682	ENSOMYG00000072923	ENSOMYG00000011692	SLX1 (ENSOMYG00000011718)	zgc:112271 (ENSOMYG00000011737)	ENSOMYG00000011744	ENSOMYG00000071916	ENSOMYG00000074843
Huchen	MODERN SPECIES	389																PCDH7 (ENSHHUG00000043470) #22	ENSHHUG00000043464 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000157221.x.j #22
Huchen	MODERN SPECIES	389															PCDH7 (ENSHHUG00000043470) #22	ENSHHUG00000043464 #22
Otomorpha	ANCESTRAL SPECIES	392								ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT01030000234945	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28
Clupeiformes	ANCESTRAL SPECIES	314					ENSGT00940000163587.a.b.b.e.a.d	ENSGT00950000183153.c.a.q	ENSGT00390000004049	ENSGT00940000166995	ENSGT01040000240503.B	ENSGT01030000234638.b.a.b	ENSGT00390000002398 #15	ENSGT00390000005197.a.bb.a.c #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000153648.b #26	ENSGT00980000199058	ENSGT00940000159709 #28
Atlantic herring	MODERN SPECIES	9	ENSCHAG00000019645	ENSCHAG00000020711	slc25a11 (ENSCHAG00000020713)	GCNT3 (ENSCHAG00000000456)	GCNT3 (ENSCHAG00000000482)	GCNT3 (ENSCHAG00000000517)	gabarapb (ENSCHAG00000000564)	CTDNEP1 (ENSCHAG00000000656)	MAN2B2 (ENSCHAG00000000975)	smim20 (ENSCHAG00000001433) #15	RBPJ (ENSCHAG00000001502) #16	CCKAR (ENSCHAG00000001739) #17	tbc1d19 (ENSCHAG00000001760) #18	STIM2 (ENSCHAG00000002167) #20	ENSCHAG00000003488	PCDH7 (ENSCHAG00000003521) #22	ENSCHAG00000003552	ENSCHAG00000004046	ENSCHAG00000004098	ENSCHAG00000004122	fam113 (ENSCHAG00000004145)	cskmt (ENSCHAG00000004244)	otub1b (ENSCHAG00000004283)	med11 (ENSCHAG00000004839)	arrb2b (ENSCHAG00000004997)	hmgb3a (ENSCHAG00000007920)	hinfp (ENSCHAG00000007937)	cd99l2 (ENSCHAG00000008291)	ENSCHAG00000008326	ttc29 (ENSCHAG00000008422)	slc10a7 (ENSCHAG00000008536)
Denticle herring	MODERN SPECIES		ENSDCDG00000004627	NAT16 (ENSDCDG00000004631)	nat16l (ENSDCDG00000004633)	ENSDCDG00000004635	ap1s1 (ENSDCDG00000004640)	serpine1 (ENSDCDG00000004683)	smim20 (ENSDCDG00000004732) #15	ENSDCDG00000004734	ENSDCDG00000004737	ENSDCDG00000004739	RBPJ (ENSDCDG00000004747) #16	CCKAR (ENSDCDG00000004766) #17	tbc1d19 (ENSDCDG00000004801) #18	STIM2 (ENSDCDG00000005046) #20	ENSDCDG00000005144	PCDH7 (ENSDCDG00000005151) #22	ENSDCDG00000005172	ENSDCDG00000005470	ENSDCDG00000005472	ENSDCDG00000013821	DTHD1 (ENSDCDG00000013827) #25	NWD2 (ENSDCDG00000013836) #26	ENSDCDG00000013845	zgc:194930 (ENSDCDG00000013851)	rell1 (ENSDCDG00000013858) #28	dvl2 (ENSDCDG00000013898)	si:ch73-335l21.2 (ENSDCDG00000014334)	si:ch73-335l21.4 (ENSDCDG00000014339)	ENSDCDG00000014342	agfg2 (ENSDCDG00000014353)	acap1 (ENSDCDG00000014474)
Otophysi	ANCESTRAL SPECIES	161			ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.w.a #22	ENSGT01030000234945	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000159709 #28	ENSGT00980000199058	ENSGT00940000153648.b #26	ENSGT00900000141164.q.b	ENSGT00940000165651.b
Characiphysae	ANCESTRAL SPECIES	19	ENSGT00390000006227	ENSGT01030000234638.b.a.b	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00940000156784	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT01030000234945	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000159709 #28	ENSGT00980000199058	ENSGT00940000153648.b #26	ENSGT00900000141164.q.b	ENSGT00940000165651.b
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT00390000002849	ENSGT00390000006227	ENSGT01030000234638.b.a.b	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00940000156784	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000159709 #28	ENSGT00980000199058	ENSGT00940000153648.b #26	ENSGT00900000141164.q.b	ENSGT00940000165651.b
Characoidei	ANCESTRAL SPECIES	9	ENSGT00940000155384.b.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT01030000234638.b.a.b	ENSGT00940000159423	ENSGT00940000159570.b	ENSGT00530000063812.C	ENSGT00940000164745.i.b	ENSGT00890000139482.a	ENSGT00550000074944	ENSGT00390000002398 #15	ENSGT00390000005197.a.cb #16	ENSGT01100000263563.c.b #17	ENSGT00390000015965 #18	ENSGT00390000000214.a.b.k #20	ENSGT00940000157221.x #22	ENSGT00940000167169	ENSGT00940000153404.b #25	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00390000000527	ENSGT00390000017455	ENSGT00940000166804	ENSGT00940000158971	ENSGT00390000015545	ENSGT00940000159709 #28	ENSGT00980000199058	ENSGT00940000153648.b #26	ENSGT00900000141164.q.b	ENSGT00940000165651.b
Red-bellied piranha	MODERN SPECIES	63	ENSPNAG00000006123	CCNB1IP1 (ENSPNAG00000001975)	ttc5 (ENSPNAG00000001978)	MAN2B2 (ENSPNAG00000011850)	acox3 (ENSPNAG00000001940)	HTRA3 (ENSPNAG00000011756)	ENSPNAG00000001888	GTSF1 (ENSPNAG00000005737)	tdrd7b (ENSPNAG00000011669)	plaa (ENSPNAG00000011648)	smim20 (ENSPNAG00000001820) #15	rbpjb (ENSPNAG00000011594) #16	CCKAR (ENSPNAG00000011557) #17	tbc1d19 (ENSPNAG00000011545) #18	STIM2 (ENSPNAG00000001745) #20	PCDH7 (ENSPNAG00000011447) #22	ENSPNAG00000001733	ENSPNAG00000011424	ENSPNAG00000006992	DTHD1 (ENSPNAG00000004807) #25	per1b (ENSPNAG00000011346)	pcolceb (ENSPNAG00000011299)	PAQR9 (ENSPNAG00000011292)	ENSPNAG00000011286	ENSPNAG00000011270	ENSPNAG00000001631	ENSPNAG00000011218	rwdd (ENSPNAG00000011214)	rell1 (ENSPNAG00000011203) #28	zgc:194930 (ENSPNAG00000011199)	NWD2 (ENSPNAG00000011192) #26
Mexicana tetra	MODERN SPECIES	7	ENSAMXG00000010953	acox3 (ENSAMXG00000010946)	HTRA3 (ENSAMXG00000010937)	ENSAMXG00000010934	ENSAMXG00000036095	tdrd7b (ENSAMXG00000010917)	plaa (ENSAMXG00000010868)	smim20 (ENSAMXG00000031387) #15	rbpjb (ENSAMXG00000010835) #16	CCKAR (ENSAMXG00000041422) #17	tbc1d19 (ENSAMXG00000038746) #18	STIM2 (ENSAMXG00000010775) #20	ENSAMXG00000036373	ENSAMXG00000037910	ENSAMXG00000035407	PCDH7 (ENSAMXG00000018969) #22	ENSAMXG00000018865	DTHD1 (ENSAMXG00000018777) #25	per1b (ENSAMXG00000018625)	pcolceb (ENSAMXG00000018478)	PAQR9 (ENSAMXG00000018419)	ENSAMXG00000018304	ENSAMXG00000032118	ENSAMXG00000035055	ENSAMXG00000039359	ENSAMXG00000018219	rwdd (ENSAMXG00000018206)	rell1 (ENSAMXG00000018157) #28	zgc:194930 (ENSAMXG00000042952)	NWD2 (ENSAMXG00000018123) #26	pcxb (ENSAMXG00000018049)
Electric eel	MODERN SPECIES	72	ENSEEEG00000019884	CCNB1IP1 (ENSEEEG00000019883)	ttc5 (ENSEEEG00000019880)	MAN2B2 (ENSEEEG00000019876)	acox3 (ENSEEEG00000019745)	HTRA3 (ENSEEEG00000019699)	GTSF1 (ENSEEEG00000019693)	ENSEEEG00000019688	tdrd7b (ENSEEEG00000019667)	plaa (ENSEEEG00000019650)	smim20 (ENSEEEG00000019643) #15	rbpjb (ENSEEEG00000019597) #16	CCKAR (ENSEEEG00000019594) #17	tbc1d19 (ENSEEEG00000019589) #18	STIM2 (ENSEEEG00000019390) #20	PCDH7 (ENSEEEG00000019378) #22	ENSEEEG00000019374	ENSEEEG00000019372 #25	per1b (ENSEEEG00000019365)	pcolceb (ENSEEEG00000019357)	PAQR9 (ENSEEEG00000019356)	ENSEEEG00000019354	ENSEEEG00000019353	ENSEEEG00000019352	ADAM33 (ENSEEEG00000019346)	rwdd (ENSEEEG00000019343)	rell1 (ENSEEEG00000019342) #28	zgc:194930 (ENSEEEG00000019341)	NWD2 (ENSEEEG00000019340) #26	ENSEEEG00000019339	pcxb (ENSEEEG00000018038)
Channel catfish	MODERN SPECIES	26	ttc5 (ENSIPUG00000002607)	sall2 (ENSIPUG00000002559)	man2b2 (ENSIPUG00000002536)	acox3 (ENSIPUG00000002518)	htra3 (ENSIPUG00000002495)	ENSIPUG00000002483	sh3tc1 (ENSIPUG00000002458)	tdrd7 (ENSIPUG00000002424)	plaa (ENSIPUG00000002347)	smim20 (ENSIPUG00000002330) #15	rbpj (ENSIPUG00000002240) #16	CCKAR (ENSIPUG00000002214) #17	tbc1d19 (ENSIPUG00000002172) #18	stim2 (ENSIPUG00000002157) #20	ENSIPUG00000002146	PCDH7 (ENSIPUG00000002132) #22	ENSIPUG00000002130	ENSIPUG00000002125	arap2 (ENSIPUG00000002086)	DTHD1 (ENSIPUG00000002070) #25	per1b (ENSIPUG00000002047)	pcolce2 (ENSIPUG00000002037)	PAQR9 (ENSIPUG00000002032)	ENSIPUG00000001994	ENSIPUG00000001978	RWDD4 (ENSIPUG00000001932)	rell1 (ENSIPUG00000001922) #28	zgc:194930 (ENSIPUG00000001916)	nwd2 (ENSIPUG00000001909) #26	ENSIPUG00000001895	ENSIPUG00000001892