Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936 #14	ENSGT00390000015871 #16	ENSGT00940000159969.a #17	ENSGT00940000159905 #18	ENSGT00950000183032.A.a #20	ENSGT00940000163562	ENSGT00950000182863.B.a #21	ENSGT00390000009113.a.b	ENSGT00940000154511.b #22	ENSGT00940000159968 #23	ENSGT00740000115534.a.b.f.a.a #25	ENSGT01050000244824.A #26	ENSGT00940000155633.D #27	ENSGT00940000163032	ENSGT00390000014654 #28
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936 #14	ENSGT00390000015871 #16	ENSGT00940000159969.a #17	ENSGT00940000159905 #18	ENSGT00950000183032.A.a #20	ENSGT00940000163562	ENSGT00950000182863.B.a #21	ENSGT00390000009113.a.b	ENSGT00940000154511.b #22	ENSGT00940000159968 #23	ENSGT00740000115534.a.b.f.a.a #25	ENSGT01050000244824.A #26	ENSGT00940000155633.D #27	ENSGT00940000163032
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936 #14	ENSGT00390000015871 #16	ENSGT00940000159969.a #17	ENSGT00940000159905 #18	ENSGT00950000183032.A.a #20	ENSGT00940000163562	ENSGT00950000182863.B.a #21	ENSGT00390000009113.a.b	ENSGT00940000154511.b #22	ENSGT00940000159968 #23	ENSGT00940000168767	ENSGT00740000115534.a.b.f.a.a #25	ENSGT01050000244824.A #26	ENSGT00940000155633.D #27	ENSGT00940000163032	ENSGT00390000014654 #28
Marmotini_b	ANCESTRAL SPECIES	52	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936 #14	ENSGT00390000015871 #16	ENSGT00940000159969.a #17	ENSGT00940000159905 #18	ENSGT00950000183032.A.a #20	ENSGT00950000182863.B.a #21	ENSGT00390000009113.a.b	ENSGT00940000154511.b #22	ENSGT00940000159968 #23	ENSGT00940000168767	ENSGT00740000115534.a.b.f.a.a #25	ENSGT01050000244824.A #26	ENSGT00940000155633.D #27	ENSGT00940000163032	ENSGT00390000014654 #28
Squirrel	MODERN SPECIES	190								NPBWR1 (ENSSTOG00000031799) #14	ENSSTOG00000033788 #15	RB1CC1 (ENSSTOG00000003037) #16	ALKAL1 (ENSSTOG00000003032) #17	ST18 (ENSSTOG00000016500) #18	ENSSTOG00000027757 #19	PCMTD1 (ENSSTOG00000005412) #20	SNTG1 (ENSSTOG00000006780) #21	SNAI2 (ENSSTOG00000028743) #22	CLXN (ENSSTOG00000005832) #23	ENSSTOG00000033326 #24	UBE2V2 (ENSSTOG00000021769) #25	MCM4 (ENSSTOG00000009905) #26	PRKDC (ENSSTOG00000009784) #27	SPIDR (ENSSTOG00000010890) #28
Arctic ground squirrel	MODERN SPECIES	153														SNTG1 (ENSUPAG00010003450) #21	PPDPFL (ENSUPAG00010003436)	SNAI2 (ENSUPAG00010003430) #22	CLXN (ENSUPAG00010003417) #23	ENSUPAG00010003410	ENSUPAG00010003405	UBE2V2 (ENSUPAG00010003380) #25	MCM4 (ENSUPAG00010003343) #26	PRKDC (ENSUPAG00010003246) #27	CEBPD (ENSUPAG00010003242)	ENSUPAG00010003234	SPIDR (ENSUPAG00010003215) #28
Alpin marmot	MODERN SPECIES	16	TCEA1 (ENSMMMG00000000970)	ATP6V1H (ENSMMMG00000000819)	OPRK1 (ENSMMMG00000000792)	ENSMMMG00000000769	ENSMMMG00000000761	NPBWR1 (ENSMMMG00000000755) #14	RB1CC1 (ENSMMMG00000000733) #16	ALKAL1 (ENSMMMG00000000712) #17	ST18 (ENSMMMG00000000496) #18	ENSMMMG00000000469 #19	PCMTD1 (ENSMMMG00000000404) #20	PXDNL (ENSMMMG00000000367)	SNTG1 (ENSMMMG00000000104) #21	ENSMMMG00000000024	ENSMMMG00000000012	SNAI2 (ENSMMMG00000022198) #22	CLXN (ENSMMMG00000022191) #23	ENSMMMG00000022170	ENSMMMG00000022167	ENSMMMG00000022157	ENSMMMG00000022151	ENSMMMG00000022149	UBE2V2 (ENSMMMG00000022141) #25	MCM4 (ENSMMMG00000022114) #26	PRKDC (ENSMMMG00000022087) #27	CEBPD (ENSMMMG00000022067)	ENSMMMG00000022065	SPIDR (ENSMMMG00000021918) #28
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005009270	OPRK1 (ENSSVLG00005009227)	ENSSVLG00005009204	ENSSVLG00005009187	NPBWR1 (ENSSVLG00005009175) #14	ENSSVLG00005009157	RB1CC1 (ENSSVLG00005009081) #16	ALKAL1 (ENSSVLG00005009002) #17	ENSSVLG00005008883 #18	ENSSVLG00005008837	PCMTD1 (ENSSVLG00005008801) #20	PXDNL (ENSSVLG00005008684)	SNTG1 (ENSSVLG00005007613) #21	PPDPFL (ENSSVLG00005007203)	ENSSVLG00005007187	SNAI2 (ENSSVLG00005007170) #22	ENSSVLG00005007144	CLXN (ENSSVLG00005007101) #23	ENSSVLG00005007072	ENSSVLG00005007058	ENSSVLG00005007040	UBE2V2 (ENSSVLG00005006994) #25	MCM4 (ENSSVLG00005006762) #26	CEBPD (ENSSVLG00005006258)	SUPT3H (ENSSVLG00005006225)	ENSSVLG00005006182	SPIDR (ENSSVLG00005005941) #28	ENSSVLG00005005907	HSD17B7 (ENSSVLG00005005883)	DDR2 (ENSSVLG00005005804)	UAP1 (ENSSVLG00005005747)
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185.cb	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936 #14	ENSGT00390000015871.v #16	ENSGT00940000159969.a #17	ENSGT00940000159905 #18	ENSGT00950000183032.A.a #20	ENSGT00950000182863.B.a #21	ENSGT00940000154511.b #22	ENSGT00940000159968 #23	ENSGT00740000115534.a.b.f.a.a #25	ENSGT01050000244824.A #26	ENSGT00940000155633.D #27	ENSGT00940000163032	ENSGT00390000014654 #28	ENSGT00940000155908.b	ENSGT00940000161075	ENSGT00940000157478	ENSGT00940000157170	ENSGT00390000010251	ENSGT01050000244857.A.a.a	ENSGT00940000158219	ENSGT00940000155474	ENSGT00390000008766
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00940000156694	ENSGT00390000009040	ENSGT00940000154185.cb	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936 #14	ENSGT00390000015871.v #16	ENSGT00940000159969.a #17	ENSGT00940000159905 #18	ENSGT00950000183032.A.a #20	ENSGT00950000182863.B.a #21	ENSGT00940000154511.b #22	ENSGT00940000159968 #23	ENSGT00740000115534.a.b.f.a.a #25	ENSGT01050000244824.A #26	ENSGT00940000155633.D #27	ENSGT00390000014654 #28	ENSGT00940000155908.b	ENSGT00940000161075	ENSGT00940000157478	ENSGT00940000157170	ENSGT00390000010251	ENSGT01050000244857.A.a.a	ENSGT00940000158219	ENSGT00940000155474	ENSGT00390000008766	ENSGT00940000161720
Hystricomorpha_b	ANCESTRAL SPECIES	27	ENSGT00390000011782	ENSGT01070000253766.A.b	ENSGT00940000154242.b	ENSGT00390000009040	ENSGT00940000154185.bb.a	ENSGT00940000155121	ENSGT00940000159123	ENSGT00390000003289	ENSGT00940000157341	ENSGT00940000161936 #14	ENSGT00390000015871.v #16	ENSGT00940000159969.a #17	ENSGT00940000159905 #18	ENSGT00950000183032.A.a #20	ENSGT00950000182863.B.a #21	ENSGT00940000154511.b #22	ENSGT00940000159968 #23	ENSGT00740000115534.a.b.f.a.a #25	ENSGT01050000244824.A #26	ENSGT00940000155633.D #27	ENSGT00390000014654 #28	ENSGT00940000155908.b	ENSGT00940000161075	ENSGT00940000157478	ENSGT00940000157170	ENSGT00390000010251	ENSGT01050000244857.A.a.a	ENSGT00940000158219	ENSGT00940000155474	ENSGT00390000008766	ENSGT00940000161720
Long-tailed chinchilla	MODERN SPECIES	161	XKR4 (ENSCLAG00000010575)	ENSCLAG00000011553	MRPL15 (ENSCLAG00000010064)	ENSCLAG00000014943	TCEA1 (ENSCLAG00000013516)	ENSCLAG00000016009	ATP6V1H (ENSCLAG00000009337)	OPRK1 (ENSCLAG00000009850)	ENSCLAG00000009340	RB1CC1 (ENSCLAG00000009807) #16	ENSCLAG00000014346 #17	ST18 (ENSCLAG00000011202) #18	PCMTD1 (ENSCLAG00000009964) #20	ENSCLAG00000014877	SNTG1 (ENSCLAG00000013065) #21	SNAI2 (ENSCLAG00000011797) #22	CLXN (ENSCLAG00000015811) #23	UBE2V2 (ENSCLAG00000010839) #25	MCM4 (ENSCLAG00000014363) #26	PRKDC (ENSCLAG00000009459) #27	SPIDR (ENSCLAG00000009550) #28	ENSCLAG00000009679	ENSCLAG00000017747	IQSEC3 (ENSCLAG00000011610)	SLC6A12 (ENSCLAG00000016481)	SLC6A13 (ENSCLAG00000012266)	KDM5A (ENSCLAG00000012583)	CCDC77 (ENSCLAG00000013123)	ENSCLAG00000012835	B4GALNT3 (ENSCLAG00000010895)	NINJ2 (ENSCLAG00000013545)