Murinae	ANCESTRAL SPECIES	10	ENSGT00390000009067 #8	ENSGT00940000153972.C #9	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000153394.c.b #13	ENSGT00940000160071 #14	ENSGT00950000183090.B #15	ENSGT00940000161365	ENSGT00940000157236 #16	ENSGT00940000165505 #17	ENSGT00940000160682.b #18	ENSGT00940000159840 #19	ENSGT00940000156976 #20	ENSGT00390000010968 #21	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080 #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00390000010377 #31	ENSGT00940000156642 #32	ENSGT00390000010825.b #33	ENSGT00940000157633 #34	ENSGT00390000010215.A #35	ENSGT00940000153392.b.a #36	ENSGT00390000004190 #37	ENSGT00440000035348.k
Mus	ANCESTRAL SPECIES	11	ENSGT00390000009067 #8	ENSGT00940000153972.C #9	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000153394.c.b #13	ENSGT00940000160071 #14	ENSGT00950000183090.B #15	ENSGT00940000161365	ENSGT00940000157236 #16	ENSGT00940000165505 #17	ENSGT00940000160682.b #18	ENSGT00940000159840 #19	ENSGT00940000156976 #20	ENSGT00390000010968 #21	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080 #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00800000125318 #30	ENSGT00390000010377 #31	ENSGT00940000156642 #32	ENSGT00390000010825.b #33	ENSGT00940000157633 #34	ENSGT00390000010215.A #35	ENSGT00940000153392.b.a #36	ENSGT00390000004190 #37
Mus_A	ANCESTRAL SPECIES	13	ENSGT00390000009067 #8	ENSGT00940000153972.C #9	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000153394.c.b #13	ENSGT00940000160071 #14	ENSGT00950000183090.B #15	ENSGT00940000161365	ENSGT00940000157236 #16	ENSGT00940000165505 #17	ENSGT00940000160682.b #18	ENSGT00940000159840 #19	ENSGT00940000156976 #20	ENSGT00390000010968 #21	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080 #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00800000125318 #30	ENSGT00390000010377 #31	ENSGT00940000156642 #32	ENSGT00390000010825.b #33	ENSGT00940000157633 #34	ENSGT00390000010215.A #35	ENSGT00940000153392.b.a #36	ENSGT00390000004190 #37
Ryukyu mouse	MODERN SPECIES	6	MGP_CAROLIEiJ_G0020151 #7	Trabd (MGP_CAROLIEiJ_G0020150) #8	Panx2 (MGP_CAROLIEiJ_G0020149) #9	Mov10l1 (MGP_CAROLIEiJ_G0020148) #10	Mlc1 (MGP_CAROLIEiJ_G0020147) #11	Ttll8 (MGP_CAROLIEiJ_G0020146) #12	Pim3 (MGP_CAROLIEiJ_G0020145) #13	Creld2 (MGP_CAROLIEiJ_G0020144) #14	Alg12 (MGP_CAROLIEiJ_G0020143) #15	Brd1 (MGP_CAROLIEiJ_G0020141) #16	Zdhhc25 (MGP_CAROLIEiJ_G0020140) #17	MGP_CAROLIEiJ_G0020139 #18	Tbc1d22a (MGP_CAROLIEiJ_G0020138) #19	Cerk (MGP_CAROLIEiJ_G0020137) #20	Gramd4 (MGP_CAROLIEiJ_G0020136) #21	Celsr1 (MGP_CAROLIEiJ_G0020135) #22	Trmu (MGP_CAROLIEiJ_G0020134) #23	Gtse1 (MGP_CAROLIEiJ_G0020133) #24	Ttc38 (MGP_CAROLIEiJ_G0020132) #25	Pkdrej (MGP_CAROLIEiJ_G0020131) #26	Cdpf1 (MGP_CAROLIEiJ_G0020130) #27	Ppara (MGP_CAROLIEiJ_G0020129) #28	MGP_CAROLIEiJ_G0020128 #29	7530416G11Rik (MGP_CAROLIEiJ_G0020127) #30	Atxn10 (MGP_CAROLIEiJ_G0020126) #31	Fbln1 (MGP_CAROLIEiJ_G0020125) #32	Ribc2 (MGP_CAROLIEiJ_G0020124) #33	Smc1b (MGP_CAROLIEiJ_G0020123) #34	Fam118a (MGP_CAROLIEiJ_G0020122) #35	Upk3a (MGP_CAROLIEiJ_G0020121) #36	5031439G07Rik (MGP_CAROLIEiJ_G0020120) #37
Mus_B	ANCESTRAL SPECIES	12	ENSGT00390000009067 #8	ENSGT00940000153972.C #9	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000153394.c.b #13	ENSGT00940000160071 #14	ENSGT00950000183090.B #15	ENSGT00940000161365	ENSGT00940000157236 #16	ENSGT00940000165505 #17	ENSGT00940000160682.b #18	ENSGT00940000159840 #19	ENSGT00940000156976 #20	ENSGT00390000010968 #21	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080 #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00800000125318 #30	ENSGT00390000010377 #31	ENSGT00940000156642 #32	ENSGT00390000010825.b #33	ENSGT00940000157633 #34	ENSGT00390000010215.A #35	ENSGT00940000153392.b.a #36	ENSGT00390000004190 #37
Mouse	MODERN SPECIES	6	Trabd (ENSMUSG00000015363) #8	Panx2 (ENSMUSG00000058441) #9	Mov10l1 (ENSMUSG00000015365) #10	Mlc1 (ENSMUSG00000035805) #11	Ttll8 (ENSMUSG00000022388) #12	Pim3 (ENSMUSG00000035828) #13	Creld2 (ENSMUSG00000023272) #14	Alg12 (ENSMUSG00000035845) #15	Zbed4 (ENSMUSG00000034333)	Brd1 (ENSMUSG00000022387) #16	Zdhhc25 (ENSMUSG00000054117) #17	Tafa5 (ENSMUSG00000054863) #18	Tbc1d22a (ENSMUSG00000051864) #19	Cerk (ENSMUSG00000035891) #20	Gramd4 (ENSMUSG00000035900) #21	Celsr1 (ENSMUSG00000016028) #22	Trmu (ENSMUSG00000022386) #23	Gtse1 (ENSMUSG00000022385) #24	Ttc38 (ENSMUSG00000035944) #25	Pkdrej (ENSMUSG00000052496) #26	Cdpf1 (ENSMUSG00000064284) #27	Ppara (ENSMUSG00000022383) #28	Wnt7b (ENSMUSG00000022382) #29	7530416G11Rik (ENSMUSG00000096607) #30	Atxn10 (ENSMUSG00000016541) #31	Fbln1 (ENSMUSG00000006369) #32	Ribc2 (ENSMUSG00000022431) #33	Smc1b (ENSMUSG00000022432) #34	Fam118a (ENSMUSG00000022434) #35	Upk3a (ENSMUSG00000022435) #36	5031439G07Rik (ENSMUSG00000036046) #37
Mus_C	ANCESTRAL SPECIES	17	ENSGT00390000009067 #8	ENSGT00940000153972.C #9	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000153394.c.b #13	ENSGT00940000160071 #14	ENSGT00950000183090.B #15	ENSGT00940000161365	ENSGT00940000157236 #16	ENSGT00940000165505 #17	ENSGT00940000160682.b #18	ENSGT00940000159840 #19	ENSGT00940000156976 #20	ENSGT00390000010968 #21	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080 #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00800000125318 #30	ENSGT00390000010377 #31	ENSGT00940000156642 #32	ENSGT00390000010825.b #33	ENSGT00940000157633 #34	ENSGT00390000010215.A #35	ENSGT00940000153392.b.a #36	ENSGT00390000004190 #37
spretus	MODERN SPECIES	6	MGP_SPRETEiJ_G0021048 #7	Trabd (MGP_SPRETEiJ_G0021047) #8	Panx2 (MGP_SPRETEiJ_G0021046) #9	Mov10l1 (MGP_SPRETEiJ_G0021045) #10	Mlc1 (MGP_SPRETEiJ_G0021044) #11	Ttll8 (MGP_SPRETEiJ_G0021043) #12	Pim3 (MGP_SPRETEiJ_G0021042) #13	Creld2 (MGP_SPRETEiJ_G0021041) #14	Alg12 (MGP_SPRETEiJ_G0021040) #15	Brd1 (MGP_SPRETEiJ_G0021038) #16	Zdhhc25 (MGP_SPRETEiJ_G0021037) #17	MGP_SPRETEiJ_G0021036 #18	Tbc1d22a (MGP_SPRETEiJ_G0021035) #19	Cerk (MGP_SPRETEiJ_G0021034) #20	Gramd4 (MGP_SPRETEiJ_G0021033) #21	Celsr1 (MGP_SPRETEiJ_G0021032) #22	Trmu (MGP_SPRETEiJ_G0021031) #23	Gtse1 (MGP_SPRETEiJ_G0021030) #24	Ttc38 (MGP_SPRETEiJ_G0021029) #25	Pkdrej (MGP_SPRETEiJ_G0021028) #26	Cdpf1 (MGP_SPRETEiJ_G0021027) #27	Ppara (MGP_SPRETEiJ_G0021026) #28	MGP_SPRETEiJ_G0021025 #29	7530416G11Rik (MGP_SPRETEiJ_G0021024) #30	Atxn10 (MGP_SPRETEiJ_G0021023) #31	Fbln1 (MGP_SPRETEiJ_G0021022) #32	Ribc2 (MGP_SPRETEiJ_G0021021) #33	Smc1b (MGP_SPRETEiJ_G0021020) #34	Fam118a (MGP_SPRETEiJ_G0021019) #35	Upk3a (MGP_SPRETEiJ_G0021018) #36	5031439G07Rik (MGP_SPRETEiJ_G0021017) #37
Steppe mouse	MODERN SPECIES	3375	Selenoo (ENSMSIG00000021500) #7	Panx2 (ENSMSIG00000021430) #9	Mov10l1 (ENSMSIG00000021302) #10	Mlc1 (ENSMSIG00000021277) #11	Ttll8 (ENSMSIG00000021260) #12	Pim3 (ENSMSIG00000021238) #13	Creld2 (ENSMSIG00000021208) #14	Alg12 (ENSMSIG00000021177) #15	Zbed4 (ENSMSIG00000021169)	Brd1 (ENSMSIG00000021095) #16	Zdhhc25 (ENSMSIG00000021088) #17	Tafa5 (ENSMSIG00000021044) #18	Tbc1d22a (ENSMSIG00000021000) #19	Cerk (ENSMSIG00000020935) #20	Gramd4 (ENSMSIG00000020801) #21	Celsr1 (ENSMSIG00000019330) #22	Trmu (ENSMSIG00000019299) #23	Gtse1 (ENSMSIG00000019265) #24	Ttc38 (ENSMSIG00000019196) #25	Pkdrej (ENSMSIG00000019190) #26	Cdpf1 (ENSMSIG00000019085) #27	Ppara (ENSMSIG00000019058) #28	ENSMSIG00000018950 #29	7530416G11Rik (ENSMSIG00000018941) #30	ENSMSIG00000018885 #31	Fbln1 (ENSMSIG00000018794) #32	Ribc2 (ENSMSIG00000018774) #33	Smc1b (ENSMSIG00000018736) #34	Fam118a (ENSMSIG00000018681) #35	Upk3a (ENSMSIG00000018665) #36	5031439G07Rik (ENSMSIG00000018648) #37
Shrew mouse	MODERN SPECIES	8	Trabd (MGP_PahariEiJ_G0020155) #8	Panx2 (MGP_PahariEiJ_G0020154) #9	Mov10l1 (MGP_PahariEiJ_G0020153) #10	Mlc1 (MGP_PahariEiJ_G0020152) #11	Ttll8 (MGP_PahariEiJ_G0020151) #12	Pim3 (MGP_PahariEiJ_G0020150) #13	Creld2 (MGP_PahariEiJ_G0020149) #14	Alg12 (MGP_PahariEiJ_G0020148) #15	MGP_PahariEiJ_G0020147	Brd1 (MGP_PahariEiJ_G0020146) #16	Zdhhc25 (MGP_PahariEiJ_G0020145) #17	MGP_PahariEiJ_G0020144 #18	Tbc1d22a (MGP_PahariEiJ_G0020143) #19	Cerk (MGP_PahariEiJ_G0020142) #20	MGP_PahariEiJ_G0020141 #21	Celsr1 (MGP_PahariEiJ_G0020140) #22	Trmu (MGP_PahariEiJ_G0020139) #23	Gtse1 (MGP_PahariEiJ_G0020138) #24	Ttc38 (MGP_PahariEiJ_G0020137) #25	Pkdrej (MGP_PahariEiJ_G0020136) #26	Cdpf1 (MGP_PahariEiJ_G0020135) #27	Ppara (MGP_PahariEiJ_G0020134) #28	MGP_PahariEiJ_G0020133 #29	MGP_PahariEiJ_G0020132 #30	Atxn10 (MGP_PahariEiJ_G0020131) #31	Fbln1 (MGP_PahariEiJ_G0020130) #32	Ribc2 (MGP_PahariEiJ_G0020129) #33	Smc1b (MGP_PahariEiJ_G0020128) #34	Fam118a (MGP_PahariEiJ_G0020127) #35	Upk3a (MGP_PahariEiJ_G0020126) #36	5031439G07Rik (MGP_PahariEiJ_G0020125) #37
Rat	MODERN SPECIES	17	Mov10l1 (ENSRNOG00000031093) #10	Mlc1 (ENSRNOG00000032871) #11	Ttll8 (ENSRNOG00000032311) #12	Pim3 (ENSRNOG00000029698) #13	Creld2 (ENSRNOG00000004659) #14	Alg12 (ENSRNOG00000004591) #15	Zbed4 (ENSRNOG00000004588)	Brd1 (ENSRNOG00000004538) #16	Zdhhc25 (ENSRNOG00000046044) #17	Tafa5 (ENSRNOG00000049349) #18	AABR07058615.1 (ENSRNOG00000004457)	Tbc1d22a (ENSRNOG00000017057) #19	LOC108351584 (ENSRNOG00000069627)	Cerk (ENSRNOG00000017022) #20	Gramd4 (ENSRNOG00000016968) #21	Celsr1 (ENSRNOG00000021285) #22	Trmu (ENSRNOG00000016465) #23	Gtse1 (ENSRNOG00000016148) #24	Ttc38 (ENSRNOG00000015916) #25	Pkdrej (ENSRNOG00000029591) #26	Cdpf1 (ENSRNOG00000032846)	Ppara (ENSRNOG00000021463) #28	Wnt7b (ENSRNOG00000015750) #29	Atxn10 (ENSRNOG00000014637) #31	Fbln1 (ENSRNOG00000014137) #32	Ribc2 (ENSRNOG00000033502) #33	Smc1b (ENSRNOG00000032570) #34	Fam118a (ENSRNOG00000013764) #35	Upk3a (ENSRNOG00000013593) #36	RGD1304694 (ENSRNOG00000031269) #37	Nup50 (ENSRNOG00000013423)