Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000162605 #13	ENSGT00940000153394.c.b #14	ENSGT00940000160071	ENSGT00950000183090.B #15	ENSGT00940000161365 #16	ENSGT00940000157236 #18	ENSGT00940000165505	ENSGT00940000160682.b #20	ENSGT00940000159840 #21	ENSGT00940000156976	ENSGT00940000168034	ENSGT00390000010968	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080 #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00390000010377 #30	ENSGT00940000156642 #31	ENSGT00390000010825.b #32	ENSGT00940000157633 #33	ENSGT00390000010215.A #34	ENSGT00940000153392.b.a #35	ENSGT00390000004190 #36	ENSGT00440000035348 #37
Caprinae	ANCESTRAL SPECIES		ENSGT00940000153972.C #9	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000162605 #13	ENSGT00940000153394.c.b #14	ENSGT00940000160071	ENSGT00950000183090.B #15	ENSGT00940000161365 #16	ENSGT00940000157236 #18	ENSGT00940000165505	ENSGT00940000160682.b #20	ENSGT00940000159840 #21	ENSGT00940000156976	ENSGT00390000010968	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B.d #24	ENSGT00390000002669 #25	ENSGT00940000162080 #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00390000010377 #30	ENSGT00940000156642 #31	ENSGT00390000010825.b #32	ENSGT00940000157633 #33	ENSGT00390000010215.A #34	ENSGT00940000153392.b.a #35	ENSGT00390000004190 #36	ENSGT00440000035348 #37
Goat	MODERN SPECIES	24	SELENOO (ENSCHIG00000021219) #7	TRABD (ENSCHIG00000017582) #8	PANX2 (ENSCHIG00000013892) #9	MOV10L1 (ENSCHIG00000018369) #10	MLC1 (ENSCHIG00000017050) #11	TTLL8 (ENSCHIG00000014342) #12	ENSCHIG00000013720 #13	PIM3 (ENSCHIG00000018282) #14	ALG12 (ENSCHIG00000018512) #15	ZBED4 (ENSCHIG00000004793) #16	ENSCHIG00000017804 #17	BRD1 (ENSCHIG00000014495) #18	ENSCHIG00000003792 #19	TAFA5 (ENSCHIG00000025679) #20	TBC1D22A (ENSCHIG00000007758) #21	CELSR1 (ENSCHIG00000018021) #22	TRMU (ENSCHIG00000017074) #23	ENSCHIG00000016329 #24	TTC38 (ENSCHIG00000016497) #25	PKDREJ (ENSCHIG00000015319) #26	CDPF1 (ENSCHIG00000021289) #27	PPARA (ENSCHIG00000026407) #28	WNT7B (ENSCHIG00000014632) #29	ATXN10 (ENSCHIG00000014589) #30	FBLN1 (ENSCHIG00000017977) #31	RIBC2 (ENSCHIG00000018975) #32	SMC1B (ENSCHIG00000026594) #33	FAM118A (ENSCHIG00000016205) #34	UPK3A (ENSCHIG00000017680) #35	KIAA0930 (ENSCHIG00000016225) #36	NUP50 (ENSCHIG00000026039) #37
Rambouillet Sheep	MODERN SPECIES	19	TRABD (ENSOARG00020006442) #8	PANX2 (ENSOARG00020006404) #9	MOV10L1 (ENSOARG00020006067) #10	MLC1 (ENSOARG00020005984) #11	TTLL8 (ENSOARG00020005938) #12	ENSOARG00020005871 #13	PIM3 (ENSOARG00020005837) #14	CRELD2 (ENSOARG00020005750)	ALG12 (ENSOARG00020005732) #15	BRD1 (ENSOARG00020005603) #18	ENSOARG00020005589	TAFA5 (ENSOARG00020005539) #20	TBC1D22A (ENSOARG00020005428) #21	CERK (ENSOARG00020005370)	GRAMD4 (ENSOARG00020005262)	CELSR1 (ENSOARG00020002430) #22	TRMU (ENSOARG00020002204) #23	TTC38 (ENSOARG00020002172) #25	PKDREJ (ENSOARG00020002150) #26	CDPF1 (ENSOARG00020002132) #27	ENSOARG00020002118	PPARA (ENSOARG00020002103) #28	WNT7B (ENSOARG00020002070) #29	ATXN10 (ENSOARG00020002026) #30	FBLN1 (ENSOARG00020001970) #31	RIBC2 (ENSOARG00020001928) #32	SMC1B (ENSOARG00020001798) #33	FAM118A (ENSOARG00020001770) #34	UPK3A (ENSOARG00020001742) #35	KIAA0930 (ENSOARG00020001724) #36	NUP50 (ENSOARG00020001696) #37
Bovinae	ANCESTRAL SPECIES	10	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000162605 #13	ENSGT00940000153394.c.b #14	ENSGT00940000160071	ENSGT00950000183090.B #15	ENSGT00940000161365 #16	ENSGT00940000157236 #18	ENSGT00940000165505	ENSGT00940000160682.b #20	ENSGT00940000159840 #21	ENSGT00940000156976	ENSGT00940000168034	ENSGT00390000010968	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080.e #26	ENSGT00940000162080.f #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00390000010377 #30	ENSGT00940000156642 #31	ENSGT00390000010825.b #32	ENSGT00940000157633 #33	ENSGT00390000010215.A #34	ENSGT00940000153392.b.a #35	ENSGT00390000004190 #36
Bos	ANCESTRAL SPECIES	2	ENSGT00940000155320.p.b	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000162605 #13	ENSGT00940000153394.c.b #14	ENSGT00940000160071	ENSGT00950000183090.B #15	ENSGT00940000161365 #16	ENSGT00940000157236 #18	ENSGT00940000165505	ENSGT00940000160682.b #20	ENSGT00940000159840 #21	ENSGT00940000156976	ENSGT00390000010968	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080.e.b #26	ENSGT00940000162080.f #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00390000010377 #30	ENSGT00940000156642 #31	ENSGT00390000010825.b #32	ENSGT00940000157633 #33	ENSGT00390000010215.A #34	ENSGT00940000153392.b.a #35	ENSGT00390000004190 #36
Bos_b	ANCESTRAL SPECIES	30	ENSGT00940000155320.p.b	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000162605 #13	ENSGT00940000153394.c.b #14	ENSGT00940000160071	ENSGT00950000183090.B #15	ENSGT00940000161365 #16	ENSGT00940000157236 #18	ENSGT00940000165505	ENSGT00940000160682.b #20	ENSGT00940000159840 #21	ENSGT00940000156976	ENSGT00390000010968	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080.e.b #26	ENSGT00940000162080.e.a #26	ENSGT00940000162080.f #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00390000010377 #30	ENSGT00940000156642 #31	ENSGT00390000010825.b #32	ENSGT00940000157633 #33	ENSGT00390000010215.A #34	ENSGT00940000153392.b.a #35
Hybrid Bos Indicus	MODERN SPECIES	24	MLC1 (ENSBIXG00005006195) #11	ENSBIXG00005009302	TTLL8 (ENSBIXG00005009296) #12	IL17REL (ENSBIXG00005000454) #13	PIM3 (ENSBIXG00005009276) #14	CRELD2 (ENSBIXG00005009248)	ALG12 (ENSBIXG00005000424) #15	ZBED4 (ENSBIXG00005000409) #16	BRD1 (ENSBIXG00005009168) #18	ENSBIXG00005009096	ENSBIXG00005009064	ENSBIXG00005009030 #20	TBC1D22A (ENSBIXG00005008971) #21	CERK (ENSBIXG00005008917)	GRAMD4 (ENSBIXG00005008897)	CELSR1 (ENSBIXG00005008833) #22	TRMU (ENSBIXG00005006403) #23	ENSBIXG00005008760 #24	ENSBIXG00005000254 #25	ENSBIXG00005008698 #26	ENSBIXG00005008693 #26	CDPF1 (ENSBIXG00005008687) #27	PPARA (ENSBIXG00005000246) #28	WNT7B (ENSBIXG00005008635) #29	ATXN10 (ENSBIXG00005008602) #30	FBLN1 (ENSBIXG00005008557) #31	RIBC2 (ENSBIXG00005005682) #32	SMC1B (ENSBIXG00005008489) #33	FAM118A (ENSBIXG00005008442) #34	ENSBIXG00005008423 #35	KIAA0930 (ENSBIXG00005008397) #36
Cow	MODERN SPECIES	24	MLC1 (ENSBTAG00000021626) #11	TTLL8 (ENSBTAG00000011098) #12	IL17REL (ENSBTAG00000045808) #13	PIM3 (ENSBTAG00000045904) #14	CRELD2 (ENSBTAG00000047801)	ALG12 (ENSBTAG00000046173) #15	ZBED4 (ENSBTAG00000049889) #16	BRD1 (ENSBTAG00000046760) #18	ENSBTAG00000014987	ENSBTAG00000030185	TAFA5 (ENSBTAG00000022986) #20	ENSBTAG00000051431	TBC1D22A (ENSBTAG00000012291) #21	CERK (ENSBTAG00000046654)	GRAMD4 (ENSBTAG00000021803)	CELSR1 (ENSBTAG00000008036) #22	TRMU (ENSBTAG00000005595) #23	GTSE1 (ENSBTAG00000007102) #24	TTC38 (ENSBTAG00000003017) #25	ENSBTAG00000008066 #26	ENSBTAG00000054859 #26	ENSBTAG00000050005 #26	CDPF1 (ENSBTAG00000008065) #27	PPARA (ENSBTAG00000008063) #28	WNT7B (ENSBTAG00000048365) #29	ATXN10 (ENSBTAG00000009351) #30	FBLN1 (ENSBTAG00000012088) #31	RIBC2 (ENSBTAG00000003594) #32	SMC1B (ENSBTAG00000024132) #33	FAM118A (ENSBTAG00000010590) #34	UPK3A (ENSBTAG00000009913) #35
Bos_a	ANCESTRAL SPECIES	24	ENSGT00940000153972.C #9	ENSGT00940000155320.p.b	ENSGT00940000160150 #10	ENSGT00390000015442 #11	ENSGT00940000162265 #12	ENSGT00940000162605 #13	ENSGT00940000153394.c.b #14	ENSGT00940000160071	ENSGT00950000183090.B #15	ENSGT00940000157236 #18	ENSGT00940000165505	ENSGT00940000160682.b #20	ENSGT00940000159840 #21	ENSGT00940000156976	ENSGT00390000010968	ENSGT00940000159839 #22	ENSGT00390000014323 #23	ENSGT00940000154189.B #24	ENSGT00390000002669 #25	ENSGT00940000162080.f #26	ENSGT00390000007925 #27	ENSGT00940000157097 #28	ENSGT00940000158861.A #29	ENSGT00390000010377 #30	ENSGT00940000156642 #31	ENSGT00390000010825.b #32	ENSGT00940000157633 #33	ENSGT00390000010215.A #34	ENSGT00940000153392.b.a #35	ENSGT00390000004190 #36	ENSGT00440000035348 #37
Domestic yak	MODERN SPECIES	24	ENSBGRG00000002477	ENSBGRG00000002468 #10	MLC1 (ENSBGRG00000002422) #11	TTLL8 (ENSBGRG00000002326) #12	ENSBGRG00000002290 #13	PIM3 (ENSBGRG00000002237) #14	CRELD2 (ENSBGRG00000002179)	ALG12 (ENSBGRG00000002140) #15	BRD1 (ENSBGRG00000001973) #18	ENSBGRG00000001951	ENSBGRG00000001919	ENSBGRG00000001883 #20	TBC1D22A (ENSBGRG00000001779) #21	CERK (ENSBGRG00000001730)	GRAMD4 (ENSBGRG00000001647)	CELSR1 (ENSBGRG00000001407) #22	TRMU (ENSBGRG00000001351) #23	GTSE1 (ENSBGRG00000001310) #24	TTC38 (ENSBGRG00000001268) #25	PKDREJ (ENSBGRG00000001224) #26	CDPF1 (ENSBGRG00000001207) #27	PPARA (ENSBGRG00000001198) #28	WNT7B (ENSBGRG00000001139) #29	ATXN10 (ENSBGRG00000001070) #30	FBLN1 (ENSBGRG00000000902) #31	RIBC2 (ENSBGRG00000000827) #32	SMC1B (ENSBGRG00000000470) #33	FAM118A (ENSBGRG00000000366) #34	UPK3A (ENSBGRG00000000291) #35	KIAA0930 (ENSBGRG00000018624) #36	NUP50 (ENSBGRG00000018554) #37
Wild yak	MODERN SPECIES	3013																ENSBMUG00000016840 #22	TRMU (ENSBMUG00000016740) #23	GTSE1 (ENSBMUG00000016693) #24	TTC38 (ENSBMUG00000016643) #25