Amniota	ANCESTRAL SPECIES	14	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Mammalia	ANCESTRAL SPECIES	12	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000172404	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a
Theria	ANCESTRAL SPECIES	9	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000172404	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a
Eutheria	ANCESTRAL SPECIES	4	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00390000007843 #8	ENSGT00940000159720	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Primates	ANCESTRAL SPECIES	3	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00390000007843.v ##8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Catarrhini	ANCESTRAL SPECIES	8	ENSGT01100000264599	ENSGT00390000007843.v ##8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00390000005121 #7	ENSGT00390000007843.u.a #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00390000005121 #7	ENSGT00390000007843.u.a #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Black snub-nosed monkey	MODERN SPECIES	1661	GIP (ENSRBIG00000039886) #7	SNF8 (ENSRBIG00000038039) #8	UBE2Z (ENSRBIG00000038578) #9	ATP5MC1 (ENSRBIG00000026711) #10	CALCOCO2 (ENSRBIG00000035235) #11	TTLL6 (ENSRBIG00000035925) #12	HOXB13 (ENSRBIG00000035598) #13	PRAC2 (ENSRBIG00000032698) #14	PRAC1 (ENSRBIG00000041996) #15	HOXB9 (ENSRBIG00000035654) #16	HOXB8 (ENSRBIG00000043329) #17	HOXB7 (ENSRBIG00000039896) #18	HOXB6 (ENSRBIG00000029050) #19	HOXB5 (ENSRBIG00000015821) #20	HOXB4 (ENSRBIG00000036141) #21	HOXB3 (ENSRBIG00000036705) #22	HOXB2 (ENSRBIG00000029105) #23	HOXB1 (ENSRBIG00000041849) #24	SKAP1 (ENSRBIG00000042563) #25	SNX11 (ENSRBIG00000030129) #26	ENSRBIG00000027048 #27	NFE2L1 (ENSRBIG00000034817) #28	COPZ2 (ENSRBIG00000038810) #29	CDK5RAP3 (ENSRBIG00000039441) #30	PRR15L (ENSRBIG00000030176) #31	PNPO (ENSRBIG00000042160) #32	SP2 (ENSRBIG00000032526) #33	ENSRBIG00000039530 #34	TXNDC2 (ENSRBIG00000040108) #35	ENSRBIG00000040735 #36	OCRL (ENSRBIG00000041702) #37
Golden snub-nosed monkey	MODERN SPECIES	585	IGF2BP1 (ENSRROG00000039581)	GIP (ENSRROG00000029793) #7	SNF8 (ENSRROG00000041052) #8	UBE2Z (ENSRROG00000038314) #9	ATP5MC1 (ENSRROG00000031127) #10	CALCOCO2 (ENSRROG00000042598) #11	TTLL6 (ENSRROG00000044208) #12	HOXB13 (ENSRROG00000042147) #13	PRAC2 (ENSRROG00000033208) #14	PRAC1 (ENSRROG00000039006) #15	HOXB9 (ENSRROG00000044654) #16	HOXB8 (ENSRROG00000045349) #17	HOXB7 (ENSRROG00000035066) #18	HOXB6 (ENSRROG00000028093) #19	HOXB5 (ENSRROG00000030674) #20	HOXB3 (ENSRROG00000037630) #22	HOXB2 (ENSRROG00000044849) #23	HOXB1 (ENSRROG00000042747) #24	SKAP1 (ENSRROG00000031517) #25	SNX11 (ENSRROG00000029464) #26	CBX1 (ENSRROG00000041227) #27	NFE2L1 (ENSRROG00000044774) #28	COPZ2 (ENSRROG00000030969) #29	CDK5RAP3 (ENSRROG00000044651) #30	PRR15L (ENSRROG00000009484) #31	PNPO (ENSRROG00000044027) #32	SP2 (ENSRROG00000037481) #33	SP6 (ENSRROG00000008983)	SCRN2 (ENSRROG00000037252)	LRRC46 (ENSRROG00000039559)	MRPL10 (ENSRROG00000033938)
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00390000005121 #7	ENSGT00390000007843.u.a #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000007843.u.a #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00390000005121 #7	ENSGT00390000007843.u.a #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00390000005121 #7	ENSGT00390000007843.u.a #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Sooty mangabey	MODERN SPECIES	564	ENSCATG00000044943	GIP (ENSCATG00000031593) #7	SNF8 (ENSCATG00000038375) #8	UBE2Z (ENSCATG00000038755) #9	ATP5MC1 (ENSCATG00000030174) #10	CALCOCO2 (ENSCATG00000007708) #11	ENSCATG00000016293	TTLL6 (ENSCATG00000029768) #12	HOXB13 (ENSCATG00000041758) #13	PRAC1 (ENSCATG00000038550) #15	HOXB9 (ENSCATG00000002169) #16	HOXB8 (ENSCATG00000025318) #17	HOXB7 (ENSCATG00000042829) #18	HOXB6 (ENSCATG00000043342) #19	HOXB5 (ENSCATG00000027616) #20	HOXB3 (ENSCATG00000031126) #22	HOXB4 (ENSCATG00000040704) #21	HOXB2 (ENSCATG00000035238) #23	HOXB1 (ENSCATG00000035575) #24	SKAP1 (ENSCATG00000044458) #25	ENSCATG00000019817	SNX11 (ENSCATG00000030351) #26	ENSCATG00000034735 ##27	NFE2L1 (ENSCATG00000040775) #28	COPZ2 (ENSCATG00000042708) #29	CDK5RAP3 (ENSCATG00000006699) #30	PRR15L (ENSCATG00000020186) #31	PNPO (ENSCATG00000039934) #32	ENSCATG00000003341 #33	SP6 (ENSCATG00000020123)	SCRN2 (ENSCATG00000038846)
Drill	MODERN SPECIES	1297	IGF2BP1 (ENSMLEG00000026086)	ENSMLEG00000043660	GIP (ENSMLEG00000032963) #7	SNF8 (ENSMLEG00000037501) #8	UBE2Z (ENSMLEG00000043345) #9	ATP5MC1 (ENSMLEG00000026746) #10	CALCOCO2 (ENSMLEG00000034129) #11	TTLL6 (ENSMLEG00000023683) #12	HOXB13 (ENSMLEG00000043860) #13	PRAC1 (ENSMLEG00000033309) #15	HOXB9 (ENSMLEG00000030602) #16	HOXB8 (ENSMLEG00000007179) #17	HOXB7 (ENSMLEG00000042331) #18	HOXB6 (ENSMLEG00000029580) #19	HOXB5 (ENSMLEG00000009970) #20	HOXB3 (ENSMLEG00000026268) #22	HOXB4 (ENSMLEG00000029897) #21	HOXB2 (ENSMLEG00000031955) #23	HOXB1 (ENSMLEG00000037557) #24	SKAP1 (ENSMLEG00000029308) #25	SNX11 (ENSMLEG00000039008) #26	CBX1 (ENSMLEG00000038745) #27	NFE2L1 (ENSMLEG00000039330) #28	COPZ2 (ENSMLEG00000039090) #29	CDK5RAP3 (ENSMLEG00000033869) #30	PRR15L (ENSMLEG00000020212) #31	PNPO (ENSMLEG00000040872) #32	SP2 (ENSMLEG00000032228) #33	SP6 (ENSMLEG00000027177)	SCRN2 (ENSMLEG00000041491)	LRRC46 (ENSMLEG00000031583)
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000007843.u.a #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b.e #10	ENSGT00950000183025.a #11	ENSGT00950000183198.c.a.a.b	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Pig-tailed macaque	MODERN SPECIES	494	SNF8 (ENSMNEG00000032473) #8	UBE2Z (ENSMNEG00000040572) #9	ENSMNEG00000011359 #10	ENSMNEG00000027016	CALCOCO2 (ENSMNEG00000041410) #11	TTLL6 (ENSMNEG00000035034) #12	HOXB13 (ENSMNEG00000036275) #13	PRAC2 (ENSMNEG00000038796) #14	PRAC1 (ENSMNEG00000045191) #15	HOXB9 (ENSMNEG00000045476) #16	HOXB8 (ENSMNEG00000034944) #17	HOXB7 (ENSMNEG00000040001) #18	HOXB6 (ENSMNEG00000042554) #19	HOXB5 (ENSMNEG00000039003) #20	HOXB4 (ENSMNEG00000032435) #21	HOXB3 (ENSMNEG00000032425) #22	HOXB2 (ENSMNEG00000043416) #23	HOXB1 (ENSMNEG00000036848) #24	ENSMNEG00000033446	SKAP1 (ENSMNEG00000015541) #25	SNX11 (ENSMNEG00000034920) #26	CBX1 (ENSMNEG00000039720) #27	NFE2L1 (ENSMNEG00000037921) #28	COPZ2 (ENSMNEG00000038720) #29	CDK5RAP3 (ENSMNEG00000029039) #30	PRR15L (ENSMNEG00000028174) #31	PNPO (ENSMNEG00000037010) #32	SP2 (ENSMNEG00000029577) #33	SP6 (ENSMNEG00000023861)	SCRN2 (ENSMNEG00000031786)	LRRC46 (ENSMNEG00000037035)
Vervet Monkey	MODERN SPECIES	7	B4GALNT2 (ENSCSAG00000002479)	IGF2BP1 (ENSCSAG00000002487)	GIP (ENSCSAG00000002491) #7	SNF8 (ENSCSAG00000002494) #8	UBE2Z (ENSCSAG00000002496) #9	ATP5MC1 (ENSCSAG00000002502) #10	CALCOCO2 (ENSCSAG00000002506) #11	TTLL6 (ENSCSAG00000002511) #12	HOXB13 (ENSCSAG00000002517) #13	HOXB9 (ENSCSAG00000002521) #16	HOXB8 (ENSCSAG00000002523) #17	HOXB7 (ENSCSAG00000002524) #18	HOXB6 (ENSCSAG00000002526) #19	HOXB5 (ENSCSAG00000002529) #20	HOXB4 (ENSCSAG00000002530) #21	HOXB3 (ENSCSAG00000002533) #22	HOXB2 (ENSCSAG00000002536) #23	HOXB1 (ENSCSAG00000002538) #24	ENSCSAG00000019043	SKAP1 (ENSCSAG00000002542) #25	SNX11 (ENSCSAG00000002545) #26	CBX1 (ENSCSAG00000002547) #27	NFE2L1 (ENSCSAG00000002550) #28	COPZ2 (ENSCSAG00000002558) #29	CDK5RAP3 (ENSCSAG00000002562) #30	PRR15L (ENSCSAG00000019042) #31	PNPO (ENSCSAG00000002565) #32	SP2 (ENSCSAG00000002567) #33	SP6 (ENSCSAG00000019041)	SCRN2 (ENSCSAG00000002569)	LRRC46 (ENSCSAG00000002574)
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713.h.b #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Hominidae	ANCESTRAL SPECIES	16	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713.h.a #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713.h.a.a.b #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Gorilla	MODERN SPECIES	18	SNF8 (ENSGGOG00000025290) #8	ENSGGOG00000041818 #9	ENSGGOG00000041027	ATP5MC1 (ENSGGOG00000001626) #10	ENSGGOG00000040493	CALCOCO2 (ENSGGOG00000005537) #11	TTLL6 (ENSGGOG00000001947) #12	HOXB13 (ENSGGOG00000001945) #13	ENSGGOG00000042122 #14	PRAC1 (ENSGGOG00000027105) #15	ENSGGOG00000036688 #16	HOXB8 (ENSGGOG00000039810) #17	HOXB7 (ENSGGOG00000002637) #18	HOXB6 (ENSGGOG00000002634) #19	HOXB5 (ENSGGOG00000023582) #20	HOXB3 (ENSGGOG00000012838) #22	HOXB2 (ENSGGOG00000009910) #23	HOXB1 (ENSGGOG00000009904) #24	SKAP1 (ENSGGOG00000012624) #25	ENSGGOG00000025896	CBX1 (ENSGGOG00000024063) #27	NFE2L1 (ENSGGOG00000002268) #28	COPZ2 (ENSGGOG00000002264) #29	ENSGGOG00000022994 #30	PRR15L (ENSGGOG00000037816) #31	PNPO (ENSGGOG00000003786) #32	SP2 (ENSGGOG00000005330) #33	SP6 (ENSGGOG00000036261)	SCRN2 (ENSGGOG00000004547)	LRRC46 (ENSGGOG00000012667)	MRPL10 (ENSGGOG00000015353)
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713.h.a.a.b #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Human	MODERN SPECIES	8	GIP (ENSG00000159224) #7	SNF8 (ENSG00000159210) #8	UBE2Z (ENSG00000159202) #9	ATP5MC1 (ENSG00000159199) #10	CALCOCO2 (ENSG00000136436) #11	TTLL6 (ENSG00000170703) #12	HOXB13 (ENSG00000159184) #13	PRAC2 (ENSG00000229637) #14	PRAC1 (ENSG00000159182) #15	HOXB9 (ENSG00000170689) #16	HOXB8 (ENSG00000120068) #17	HOXB7 (ENSG00000260027) #18	HOXB6 (ENSG00000108511) #19	HOXB5 (ENSG00000120075) #20	HOXB4 (ENSG00000182742) #21	HOXB3 (ENSG00000120093) #22	HOXB2 (ENSG00000173917) #23	HOXB1 (ENSG00000120094) #24	SKAP1 (ENSG00000141293) #25	SNX11 (ENSG00000002919) #26	CBX1 (ENSG00000108468) #27	NFE2L1 (ENSG00000082641) #28	COPZ2 (ENSG00000005243) #29	CDK5RAP3 (ENSG00000108465) #30	PRR15L (ENSG00000167183) #31	PNPO (ENSG00000108439) #32	SP2 (ENSG00000167182) #33	SP6 (ENSG00000189120)	SCRN2 (ENSG00000141295)	LRRC46 (ENSG00000141294)	MRPL10 (ENSG00000159111)
Pan	ANCESTRAL SPECIES	3	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT00940000165611 #15	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713.h.a.a.b #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603.b
Chimpanzee	MODERN SPECIES	8	SNF8 (ENSPTRG00000051067) #8	UBE2Z (ENSPTRG00000009365) #9	ENSPTRG00000051053	ATP5MC1 (ENSPTRG00000009364) #10	CALCOCO2 (ENSPTRG00000009363) #11	TTLL6 (ENSPTRG00000009361) #12	HOXB13 (ENSPTRG00000009360) #13	PRAC2 (ENSPTRG00000048455) #14	PRAC1 (ENSPTRG00000009359) #15	HOXB9 (ENSPTRG00000009358) #16	HOXB8 (ENSPTRG00000048497) #17	HOXB7 (ENSPTRG00000009357) #18	HOXB6 (ENSPTRG00000009356) #19	HOXB5 (ENSPTRG00000009355) #20	HOXB4 (ENSPTRG00000009354) #21	HOXB3 (ENSPTRG00000052423) #22	HOXB2 (ENSPTRG00000009352) #23	HOXB1 (ENSPTRG00000009351) #24	SKAP1 (ENSPTRG00000009350) #25	SNX11 (ENSPTRG00000009349) #26	CBX1 (ENSPTRG00000052115) #27	NFE2L1 (ENSPTRG00000022631) #28	COPZ2 (ENSPTRG00000009346) #29	CDK5RAP3 (ENSPTRG00000009345) #30	PRR15L (ENSPTRG00000047216) #31	PNPO (ENSPTRG00000009343) #32	SP2 (ENSPTRG00000009342) #33	SP6 (ENSPTRG00000009340)	SCRN2 (ENSPTRG00000009339)	LRRC46 (ENSPTRG00000009338)	MRPL10 (ENSPTRG00000009337)
Bonobo	MODERN SPECIES	8	ENSPPAG00000029732	SNF8 (ENSPPAG00000030822) #8	ENSPPAG00000029824	ENSPPAG00000001213 #9	ATP5MC1 (ENSPPAG00000039996) #10	CALCOCO2 (ENSPPAG00000037813) #11	TTLL6 (ENSPPAG00000036197) #12	HOXB13 (ENSPPAG00000027794) #13	PRAC1 (ENSPPAG00000014004) #15	HOXB9 (ENSPPAG00000028486) #16	HOXB8 (ENSPPAG00000034804) #17	HOXB7 (ENSPPAG00000010963) #18	HOXB6 (ENSPPAG00000032229) #19	HOXB5 (ENSPPAG00000039181) #20	HOXB4 (ENSPPAG00000040659) #21	HOXB3 (ENSPPAG00000032630) #22	HOXB2 (ENSPPAG00000027417) #23	HOXB1 (ENSPPAG00000039129) #24	SKAP1 (ENSPPAG00000039277) #25	SNX11 (ENSPPAG00000033185) #26	ENSPPAG00000030413 #27	NFE2L1 (ENSPPAG00000031737) #28	COPZ2 (ENSPPAG00000043351) #29	ENSPPAG00000029145 #30	PRR15L (ENSPPAG00000003316) #31	PNPO (ENSPPAG00000038148) #32	SP2 (ENSPPAG00000027065) #33	SP6 (ENSPPAG00000026169)	SCRN2 (ENSPPAG00000028214)	LRRC46 (ENSPPAG00000038983)	MRPL10 (ENSPPAG00000034452)
Orangutan	MODERN SPECIES	8	GIP (ENSPPYG00000008912) #7	ENSPPYG00000008911 #8	UBE2Z (ENSPPYG00000032681) #9	ATP5MC1 (ENSPPYG00000008909) #10	CALCOCO2 (ENSPPYG00000008907) #11	TTLL6 (ENSPPYG00000008906) #12	HOXB13 (ENSPPYG00000008904) #13	ENSPPYG00000036609 #14	PRAC1 (ENSPPYG00000008903) #15	HOXB9 (ENSPPYG00000008902) #16	HOXB8 (ENSPPYG00000038542) #17	HOXB7 (ENSPPYG00000008901) #18	HOXB6 (ENSPPYG00000008899) #19	HOXB5 (ENSPPYG00000008898) #20	HOXB4 (ENSPPYG00000008897) #21	HOXB3 (ENSPPYG00000008896) #22	HOXB2 (ENSPPYG00000008895) #23	HOXB1 (ENSPPYG00000008894) #24	SKAP1 (ENSPPYG00000008893) #25	SNX11 (ENSPPYG00000008892) #26	ENSPPYG00000008891 ##27	NFE2L1 (ENSPPYG00000036998) #28	ENSPPYG00000008889 #29	CDK5RAP3 (ENSPPYG00000008888) #30	PRR15L (ENSPPYG00000008887) #31	PNPO (ENSPPYG00000040967) #32	SP2 (ENSPPYG00000008885) #33	SP6 (ENSPPYG00000008884)	SCRN2 (ENSPPYG00000008883)	LRRC46 (ENSPPYG00000032761)	MRPL10 (ENSPPYG00000008881)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00390000005121 #7	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Mas night monkey	MODERN SPECIES	481	GIP (ENSANAG00000030188) #7	SNF8 (ENSANAG00000032764) #8	UBE2Z (ENSANAG00000029636) #9	ATP5MC1 (ENSANAG00000024881) #10	ENSANAG00000020581 #11	TTLL6 (ENSANAG00000031133) #12	PRAC2 (ENSANAG00000025557) #14	HOXB13 (ENSANAG00000023991) #13	ENSANAG00000030331	HOXB9 (ENSANAG00000035156) #16	HOXB8 (ENSANAG00000028346) #17	HOXB7 (ENSANAG00000025513) #18	HOXB6 (ENSANAG00000023964) #19	HOXB5 (ENSANAG00000024299) #20	HOXB4 (ENSANAG00000024005) #21	HOXB3 (ENSANAG00000032072) #22	HOXB2 (ENSANAG00000023626) #23	HOXB1 (ENSANAG00000032306) #24	ENSANAG00000023400	SKAP1 (ENSANAG00000026853) #25	SNX11 (ENSANAG00000022588) #26	ENSANAG00000036853 ##27	NFE2L1 (ENSANAG00000027606) #28	COPZ2 (ENSANAG00000023309) #29	CDK5RAP3 (ENSANAG00000021880) #30	PNPO (ENSANAG00000026080) #32	SP2 (ENSANAG00000032738) #33	SP6 (ENSANAG00000019338)	SCRN2 (ENSANAG00000021482)	LRRC46 (ENSANAG00000028496)	MRPL10 (ENSANAG00000022792)
Cebidae	ANCESTRAL SPECIES	10	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00390000007843.u.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a.t.b #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00860000135909 #14	ENSGT01050000247531	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000154172.gb.b.b.b	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Bolivian squirrel monkey	MODERN SPECIES	86	SNF8 (ENSSBOG00000026186) #8	ENSSBOG00000028176	UBE2Z (ENSSBOG00000036224) #9	ENSSBOG00000028794	CALCOCO2 (ENSSBOG00000035276) #11	TTLL6 (ENSSBOG00000028908) #12	HOXB13 (ENSSBOG00000029964) #13	PRAC2 (ENSSBOG00000032603) #14	ENSSBOG00000030794	HOXB9 (ENSSBOG00000030218) #16	HOXB8 (ENSSBOG00000034884) #17	HOXB7 (ENSSBOG00000020028) #18	HOXB6 (ENSSBOG00000031900) #19	HOXB5 (ENSSBOG00000018198) #20	HOXB4 (ENSSBOG00000024432) #21	HOXB3 (ENSSBOG00000030844) #22	HOXB2 (ENSSBOG00000025070) #23	HOXB1 (ENSSBOG00000034875) #24	ENSSBOG00000019520	SKAP1 (ENSSBOG00000029434) #25	SNX11 (ENSSBOG00000026967) #26	ENSSBOG00000031880 ##27	NFE2L1 (ENSSBOG00000023867) #28	COPZ2 (ENSSBOG00000033633) #29	CDK5RAP3 (ENSSBOG00000033272) #30	PRR15L (ENSSBOG00000019240) #31	PNPO (ENSSBOG00000021213) #32	SP2 (ENSSBOG00000029098) #33	SP6 (ENSSBOG00000014210)	SCRN2 (ENSSBOG00000027391)	LRRC46 (ENSSBOG00000026980)
Capuchin	MODERN SPECIES	228							HOXB13 (ENSCCAG00000036871) #13	ENSCCAG00000036164 #14	ENSCCAG00000019672	HOXB7 (ENSCCAG00000023947) #18	HOXB9 (ENSCCAG00000035938) #16	HOXB8 (ENSCCAG00000026051) #17	HOXB6 (ENSCCAG00000022842) #19	HOXB5 (ENSCCAG00000036867) #20	HOXB4 (ENSCCAG00000020311) #21	HOXB3 (ENSCCAG00000013598) #22	HOXB2 (ENSCCAG00000024035) #23	HOXB1 (ENSCCAG00000027667) #24	ENSCCAG00000019181	SKAP1 (ENSCCAG00000035663) #25	SNX11 (ENSCCAG00000030167) #26	CBX1 (ENSCCAG00000025085) #27	NFE2L1 (ENSCCAG00000029090) #28	COPZ2 (ENSCCAG00000021292) #29	CDK5RAP3 (ENSCCAG00000038053) #30	PNPO (ENSCCAG00000029175) #32	SP2 (ENSCCAG00000038047) #33	SP6 (ENSCCAG00000020330)	SCRN2 (ENSCCAG00000031435)	LRRC46 (ENSCCAG00000030568)	MRPL10 (ENSCCAG00000023150)
Marmoset	MODERN SPECIES	17	ENSCJAG00000079002	IGF2BP1 (ENSCJAG00000007258)	GIP (ENSCJAG00000007300) #7	SNF8 (ENSCJAG00000007322) #8	UBE2Z (ENSCJAG00000007326) #9	ATP5MC1 (ENSCJAG00000075375) #10	CALCOCO2 (ENSCJAG00000007375) #11	TTLL6 (ENSCJAG00000007395) #12	HOXB13 (ENSCJAG00000007437) #13	HOXB9 (ENSCJAG00000007442) #16	HOXB8 (ENSCJAG00000045730) #17	HOXB7 (ENSCJAG00000007457) #18	HOXB6 (ENSCJAG00000007467) #19	HOXB5 (ENSCJAG00000007472) #20	HOXB4 (ENSCJAG00000007480) #21	HOXB3 (ENSCJAG00000007487) #22	HOXB2 (ENSCJAG00000007494) #23	HOXB1 (ENSCJAG00000007496) #24	ENSCJAG00000038853	SKAP1 (ENSCJAG00000007504) #25	SNX11 (ENSCJAG00000039549) #26	CBX1 (ENSCJAG00000042052) #27	NFE2L1 (ENSCJAG00000007542) #28	ENSCJAG00000058197	COPZ2 (ENSCJAG00000007567) #29	CDK5RAP3 (ENSCJAG00000007669) #30	PRR15L (ENSCJAG00000044487) #31	PNPO (ENSCJAG00000007693) #32	SP2 (ENSCJAG00000007713) #33	SP6 (ENSCJAG00000043946)	SCRN2 (ENSCJAG00000047705)
Tarsier	MODERN SPECIES	4193											HOXB7 (ENSTSYG00000028173) #18	HOXB6 (ENSTSYG00000031001) #19	HOXB5 (ENSTSYG00000032912) #20	HOXB4 (ENSTSYG00000026874) #21	ENSTSYG00000029322	HOXB3 (ENSTSYG00000035231) #22	HOXB2 (ENSTSYG00000004903) #23	HOXB1 (ENSTSYG00000004656) #24
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.h #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.h #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.h #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Coquerels sifaka	MODERN SPECIES	120	ENSPCOG00000018672	IGF2BP1 (ENSPCOG00000006475)	GIP (ENSPCOG00000024832) #7	SNF8 (ENSPCOG00000026895) #8	UBE2Z (ENSPCOG00000014816) #9	ENSPCOG00000008741	CALCOCO2 (ENSPCOG00000021998) #11	TTLL6 (ENSPCOG00000021391) #12	HOXB13 (ENSPCOG00000018182) #13	HOXB9 (ENSPCOG00000027130) #16	HOXB8 (ENSPCOG00000024853) #17	HOXB7 (ENSPCOG00000028248) #18	HOXB6 (ENSPCOG00000019931) #19	HOXB5 (ENSPCOG00000015692) #20	HOXB4 (ENSPCOG00000022963) #21	HOXB3 (ENSPCOG00000020113) #22	HOXB2 (ENSPCOG00000017380) #23	HOXB1 (ENSPCOG00000025930) #24	SKAP1 (ENSPCOG00000022221) #25	SNX11 (ENSPCOG00000011015) #26	ENSPCOG00000010902 #27	NFE2L1 (ENSPCOG00000021740) #28	COPZ2 (ENSPCOG00000018359) #29	CDK5RAP3 (ENSPCOG00000016598) #30	PNPO (ENSPCOG00000017906) #32	SP2 (ENSPCOG00000017198) #33	SP6 (ENSPCOG00000008529)	SCRN2 (ENSPCOG00000014438)	LRRC46 (ENSPCOG00000015829)	MRPL10 (ENSPCOG00000025492)	OSBPL7 (ENSPCOG00000019714)
Greater bamboo lemur	MODERN SPECIES	168		IGF2BP1 (ENSPSMG00000020445)	GIP (ENSPSMG00000020432) #7	SNF8 (ENSPSMG00000020426) #8	UBE2Z (ENSPSMG00000020387) #9	ENSPSMG00000020369	CALCOCO2 (ENSPSMG00000020308) #11	ENSPSMG00000020243 #12	HOXB13 (ENSPSMG00000020237) #13	HOXB9 (ENSPSMG00000020232) #16	HOXB8 (ENSPSMG00000020227) #17	HOXB7 (ENSPSMG00000020218) #18	HOXB6 (ENSPSMG00000020209) #19	HOXB5 (ENSPSMG00000020200) #20	HOXB4 (ENSPSMG00000020187) #21	HOXB3 (ENSPSMG00000020182) #22	HOXB2 (ENSPSMG00000020176) #23	HOXB1 (ENSPSMG00000020167) #24	SKAP1 (ENSPSMG00000020161) #25	SNX11 (ENSPSMG00000020139) #26	CBX1 (ENSPSMG00000020119) #27
Mouse lemur	MODERN SPECIES	7	ENSMICG00000037104	ENSMICG00000013324	GIP (ENSMICG00000013317) #7	SNF8 (ENSMICG00000013305) #8	UBE2Z (ENSMICG00000046102) #9	ENSMICG00000003414	CALCOCO2 (ENSMICG00000015330) #11	TTLL6 (ENSMICG00000007549) #12	HOXB13 (ENSMICG00000007546) #13	HOXB9 (ENSMICG00000038413) #16	HOXB8 (ENSMICG00000045961) #17	HOXB7 (ENSMICG00000007539) #18	HOXB6 (ENSMICG00000042216) #19	HOXB5 (ENSMICG00000047139) #20	HOXB4 (ENSMICG00000043173) #21	HOXB3 (ENSMICG00000007522) #22	HOXB2 (ENSMICG00000038222) #23	HOXB1 (ENSMICG00000048152) #24	SKAP1 (ENSMICG00000047158) #25	ENSMICG00000029923	SNX11 (ENSMICG00000014741) #26	NFE2L1 (ENSMICG00000014716) #28	ENSMICG00000009510 #27	COPZ2 (ENSMICG00000014097) #29	CDK5RAP3 (ENSMICG00000014077) #30	ENSMICG00000014065 #32	SP2 (ENSMICG00000036051) #33	SP6 (ENSMICG00000047695)	SCRN2 (ENSMICG00000004823)	LRRC46 (ENSMICG00000004816)	MRPL10 (ENSMICG00000048091)
Bushbaby	MODERN SPECIES	133	IGF2BP1 (ENSOGAG00000001270)	GIP (ENSOGAG00000010130) #7	ENSOGAG00000001269 #8	UBE2Z (ENSOGAG00000001267) #9	ATP5MC1 (ENSOGAG00000011713) #10	CALCOCO2 (ENSOGAG00000011709) #11	TTLL6 (ENSOGAG00000011701) #12	HOXB13 (ENSOGAG00000032643) #13	ENSOGAG00000034464	HOXB9 (ENSOGAG00000008668) #16	HOXB8 (ENSOGAG00000029480) #17	HOXB7 (ENSOGAG00000008667) #18	HOXB6 (ENSOGAG00000008661) #19	HOXB5 (ENSOGAG00000032432) #20	HOXB4 (ENSOGAG00000033709) #21	HOXB3 (ENSOGAG00000032090) #22	HOXB2 (ENSOGAG00000029280) #23	HOXB1 (ENSOGAG00000031645) #24	SKAP1 (ENSOGAG00000015855) #25	SNX11 (ENSOGAG00000015854) #26	CBX1 (ENSOGAG00000005658) #27	NFE2L1 (ENSOGAG00000025191) #28	COPZ2 (ENSOGAG00000004954) #29	CDK5RAP3 (ENSOGAG00000004951) #30	PRR15L (ENSOGAG00000006187) #31	PNPO (ENSOGAG00000006186) #32	SP2 (ENSOGAG00000030380) #33	SP6 (ENSOGAG00000030282)	SCRN2 (ENSOGAG00000006181)	LRRC46 (ENSOGAG00000006177)	MRPL10 (ENSOGAG00000006173)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Tree shrew	MODERN SPECIES	851																HOXB3 (ENSTBEG00000015809) #22
Glires	ANCESTRAL SPECIES	3	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Marmotini	ANCESTRAL SPECIES	8	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Squirrel	MODERN SPECIES	90	IGF2BP1 (ENSSTOG00000010643)	GIP (ENSSTOG00000004043) #7	SNF8 (ENSSTOG00000004023) #8	UBE2Z (ENSSTOG00000000796) #9	ATP5MC1 (ENSSTOG00000013404) #10	ENSSTOG00000013395 #11	TTLL6 (ENSSTOG00000006016) #12	ENSSTOG00000025444	HOXB13 (ENSSTOG00000014942) #13	HOXB9 (ENSSTOG00000009741) #16	HOXB8 (ENSSTOG00000028337) #17	HOXB7 (ENSSTOG00000025657) #18	HOXB6 (ENSSTOG00000020303) #19	HOXB5 (ENSSTOG00000009740) #20	HOXB4 (ENSSTOG00000009734) #21	HOXB3 (ENSSTOG00000025093) #22	HOXB2 (ENSSTOG00000023586) #23	HOXB1 (ENSSTOG00000028630) #24	SKAP1 (ENSSTOG00000013692) #25	SNX11 (ENSSTOG00000013684) #26	CBX1 (ENSSTOG00000023986) #27	NFE2L1 (ENSSTOG00000013664) #28	ENSSTOG00000027550 #29	CDK5RAP3 (ENSSTOG00000006244) #30	PRR15L (ENSSTOG00000006235) #31	PNPO (ENSSTOG00000006221) #32	SP2 (ENSSTOG00000015926) #33	SP6 (ENSSTOG00000001607)	SCRN2 (ENSSTOG00000027108)	LRRC46 (ENSSTOG00000002068)	MRPL10 (ENSSTOG00000024617)
Arctic ground squirrel	MODERN SPECIES	46	B4GALNT2 (ENSUPAG00010006086)	IGF2BP1 (ENSUPAG00010006100)	GIP (ENSUPAG00010006136) #7	SNF8 (ENSUPAG00010006148) #8	UBE2Z (ENSUPAG00010006178) #9	ENSUPAG00010006195	CALCOCO2 (ENSUPAG00010006243) #11	TTLL6 (ENSUPAG00010006267) #12	HOXB13 (ENSUPAG00010006301) #13	HOXB9 (ENSUPAG00010006305) #16	HOXB8 (ENSUPAG00010006310) #17	HOXB7 (ENSUPAG00010006312) #18	HOXB6 (ENSUPAG00010006317) #19	HOXB5 (ENSUPAG00010006320) #20	HOXB4 (ENSUPAG00010006325) #21	HOXB3 (ENSUPAG00010006328) #22	HOXB2 (ENSUPAG00010006336) #23	HOXB1 (ENSUPAG00010006340) #24	SKAP1 (ENSUPAG00010006345) #25	SNX11 (ENSUPAG00010006370) #26	CBX1 (ENSUPAG00010006381) #27	NFE2L1 (ENSUPAG00010006396) #28	COPZ2 (ENSUPAG00010006455) #29	CDK5RAP3 (ENSUPAG00010006466) #30	PRR15L (ENSUPAG00010006473) #31	PNPO (ENSUPAG00010006483) #32	SP2 (ENSUPAG00010006507) #33	SP6 (ENSUPAG00010006522)	SCRN2 (ENSUPAG00010006526)	LRRC46 (ENSUPAG00010006533)	MRPL10 (ENSUPAG00010006539)
Alpin marmot	MODERN SPECIES	42	ABI3 (ENSMMMG00000000452)	GNGT2 (ENSMMMG00000000525)	B4GALNT2 (ENSMMMG00000000569)	IGF2BP1 (ENSMMMG00000000613)	GIP (ENSMMMG00000000652) #7	SNF8 (ENSMMMG00000000680) #8	UBE2Z (ENSMMMG00000000717) #9	ATP5MC1 (ENSMMMG00000000731) #10	ENSMMMG00000000759 #11	TTLL6 (ENSMMMG00000001013) #12	HOXB13 (ENSMMMG00000001064) #13	HOXB7 (ENSMMMG00000001087) #18	HOXB6 (ENSMMMG00000001098) #19	HOXB5 (ENSMMMG00000001112) #20	HOXB4 (ENSMMMG00000001129) #21	HOXB3 (ENSMMMG00000001139) #22	HOXB1 (ENSMMMG00000001151) #24	SKAP1 (ENSMMMG00000001168) #25	SNX11 (ENSMMMG00000001243) #26	CBX1 (ENSMMMG00000001254) #27	NFE2L1 (ENSMMMG00000001284) #28	COPZ2 (ENSMMMG00000001352) #29	CDK5RAP3 (ENSMMMG00000001404) #30	GOSR2 (ENSMMMG00000001471)	RPRML (ENSMMMG00000001486)	LYZL6 (ENSMMMG00000001501)	ENSMMMG00000001520	ENSMMMG00000001551	ENSMMMG00000001756	ENSMMMG00000001792	MAP3K14 (ENSMMMG00000002213)
Eurasian red squirrel	MODERN SPECIES	12	IGF2BP1 (ENSSVLG00005020596)	GIP (ENSSVLG00005020522) #7	SNF8 (ENSSVLG00005020472) #8	ENSSVLG00005020450	UBE2Z (ENSSVLG00005020428) #9	ATP5MC1 (ENSSVLG00005020344) #10	CALCOCO2 (ENSSVLG00005020296) #11	TTLL6 (ENSSVLG00005020005) #12	HOXB13 (ENSSVLG00005019820) #13	HOXB9 (ENSSVLG00005019725) #16	HOXB8 (ENSSVLG00005019675) #17	HOXB7 (ENSSVLG00005019618) #18	HOXB6 (ENSSVLG00005019586) #19	HOXB5 (ENSSVLG00005019546) #20	HOXB4 (ENSSVLG00005019455) #21	HOXB3 (ENSSVLG00005019421) #22	HOXB2 (ENSSVLG00005019378) #23	HOXB1 (ENSSVLG00005019304) #24	SKAP1 (ENSSVLG00005019232) #25	SNX11 (ENSSVLG00005019122) #26	CBX1 (ENSSVLG00005019034) #27	NFE2L1 (ENSSVLG00005018798) #28	COPZ2 (ENSSVLG00005018641) #29	CDK5RAP3 (ENSSVLG00005018459) #30	PRR15L (ENSSVLG00005018399) #31	PNPO (ENSSVLG00005018295) #32	ENSSVLG00005018218 #33	SP6 (ENSSVLG00005018194)	SCRN2 (ENSSVLG00005018077)	LRRC46 (ENSSVLG00005018036)	MRPL10 (ENSSVLG00005017985)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Naked mole-rat female	MODERN SPECIES	12	IGF2BP1 (ENSHGLG00000010492)	ENSHGLG00000010703 #7	SNF8 (ENSHGLG00000011519) #8	UBE2Z (ENSHGLG00000016280) #9	ATP5MC1 (ENSHGLG00000035460) #10	CALCOCO2 (ENSHGLG00000012114) #11	TTLL6 (ENSHGLG00000019187) #12	HOXB13 (ENSHGLG00000014634) #13	ENSHGLG00000048296	HOXB9 (ENSHGLG00000014731) #16	HOXB8 (ENSHGLG00000038380) #17	HOXB7 (ENSHGLG00000045318) #18	HOXB6 (ENSHGLG00000012400) #19	HOXB5 (ENSHGLG00000039265) #20	HOXB4 (ENSHGLG00000034075) #21	HOXB3 (ENSHGLG00000010686) #22	HOXB2 (ENSHGLG00000010090) #23	HOXB1 (ENSHGLG00000009781) #24	SKAP1 (ENSHGLG00000014563) #25	SNX11 (ENSHGLG00000016837) #26	CBX1 (ENSHGLG00000013574) #27	NFE2L1 (ENSHGLG00000012592) #28	COPZ2 (ENSHGLG00000018543) #29	CDK5RAP3 (ENSHGLG00000019464) #30	PRR15L (ENSHGLG00000014696) #31	PNPO (ENSHGLG00000013159) #32	SP2 (ENSHGLG00000009902) #33	SP6 (ENSHGLG00000021113)	SCRN2 (ENSHGLG00000041375)	LRRC46 (ENSHGLG00000035931)	MRPL10 (ENSHGLG00000048399)
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Guinea pig	MODERN SPECIES	53	ENSCPOG00000020987	GNGT2 (ENSCPOG00000030054)	B4GALNT2 (ENSCPOG00000006191)	IGF2BP1 (ENSCPOG00000020174)	GIP (ENSCPOG00000023966) #7	SNF8 (ENSCPOG00000020610) #8	UBE2Z (ENSCPOG00000024416) #9	ENSCPOG00000009017 #10	CALCOCO2 (ENSCPOG00000021273) #11	TTLL6 (ENSCPOG00000012509) #12	HOXB13 (ENSCPOG00000013509) #13	HOXB9 (ENSCPOG00000037597) #16	HOXB6 (ENSCPOG00000040707) #19	HOXB5 (ENSCPOG00000030746) #20	ENSCPOG00000010105	ENSCPOG00000010107 #22	HOXB2 (ENSCPOG00000035468) #23	HOXB1 (ENSCPOG00000022183) #24	SKAP1 (ENSCPOG00000022118) #25	SNX11 (ENSCPOG00000020234) #26	CBX1 (ENSCPOG00000034435) #27	NFE2L1 (ENSCPOG00000030805) #28	COPZ2 (ENSCPOG00000019500) #29	CDK5RAP3 (ENSCPOG00000007275) #30	PRR15L (ENSCPOG00000035567) #31	PNPO (ENSCPOG00000003187) #32	SP2 (ENSCPOG00000014943) #33	SP6 (ENSCPOG00000007638)	SCRN2 (ENSCPOG00000006929)	LRRC46 (ENSCPOG00000006925)	MRPL10 (ENSCPOG00000037104)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Long-tailed chinchilla	MODERN SPECIES	158	GNGT2 (ENSCLAG00000014970)	B4GALNT2 (ENSCLAG00000016224)	IGF2BP1 (ENSCLAG00000015853)	ENSCLAG00000014301 #7	SNF8 (ENSCLAG00000013387) #8	UBE2Z (ENSCLAG00000016068) #9	ATP5MC1 (ENSCLAG00000015723) #10	CALCOCO2 (ENSCLAG00000015881) #11	TTLL6 (ENSCLAG00000013529) #12	HOXB13 (ENSCLAG00000014855) #13	ENSCLAG00000015198 #16	HOXB7 (ENSCLAG00000014906) #18	HOXB6 (ENSCLAG00000015524) #19	HOXB5 (ENSCLAG00000014374) #20	HOXB4 (ENSCLAG00000014725) #21	HOXB3 (ENSCLAG00000015322) #22	HOXB2 (ENSCLAG00000015271) #23	HOXB1 (ENSCLAG00000013047) #24	SKAP1 (ENSCLAG00000015423) #25	SNX11 (ENSCLAG00000015837) #26	CBX1 (ENSCLAG00000013587) #27	NFE2L1 (ENSCLAG00000014836) #28	COPZ2 (ENSCLAG00000013544) #29	CDK5RAP3 (ENSCLAG00000012292) #30	PRR15L (ENSCLAG00000017903) #31	PNPO (ENSCLAG00000013871) #32	SP2 (ENSCLAG00000014115) #33	SP6 (ENSCLAG00000016276)	LRRC46 (ENSCLAG00000016713)	SCRN2 (ENSCLAG00000013965)	MRPL10 (ENSCLAG00000015400)
Degu	MODERN SPECIES	97	GNGT2 (ENSODEG00000017526)	B4GALNT2 (ENSODEG00000018456)	ENSODEG00000016991	ENSODEG00000017109	GIP (ENSODEG00000017003) #7	ENSODEG00000017032 #8	UBE2Z (ENSODEG00000017306) #9	ATP5MC1 (ENSODEG00000017366) #10	TTLL6 (ENSODEG00000017145) #12	HOXB13 (ENSODEG00000017199) #13	HOXB9 (ENSODEG00000017293) #16	HOXB8 (ENSODEG00000017119) #17	HOXB6 (ENSODEG00000016988) #19	HOXB5 (ENSODEG00000017253) #20	HOXB4 (ENSODEG00000017038) #21	HOXB3 (ENSODEG00000017116) #22	HOXB2 (ENSODEG00000017153) #23	HOXB1 (ENSODEG00000017050) #24	SKAP1 (ENSODEG00000017533) #25	SNX11 (ENSODEG00000017458) #26	CBX1 (ENSODEG00000017272) #27	NFE2L1 (ENSODEG00000017348) #28	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #29	ENSODEG00000017229 #30	PNPO (ENSODEG00000017424) #32	SP2 (ENSODEG00000017126) #33	SP6 (ENSODEG00000017625)	SCRN2 (ENSODEG00000017395)	LRRC46 (ENSODEG00000017367)	MRPL10 (ENSODEG00000017536)
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Myomorpha	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Muroidea	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.a.a ##27	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.`b.b	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.a.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Golden Hamster	MODERN SPECIES	674	Abi3 (ENSMAUG00000021085)	Gngt2 (ENSMAUG00000019144)	B4galnt2 (ENSMAUG00000007916)	Gip (ENSMAUG00000009238) #7	Snf8 (ENSMAUG00000001857) #8	Ube2z (ENSMAUG00000007792) #9	ENSMAUG00000021751	Ttll6 (ENSMAUG00000020973) #12	Hoxb13 (ENSMAUG00000008407) #13	Hoxb9 (ENSMAUG00000017720) #16	Hoxb8 (ENSMAUG00000012636) #17	Hoxb7 (ENSMAUG00000021297) #18	Hoxb6 (ENSMAUG00000021423) #19	Hoxb5 (ENSMAUG00000021419) #20	Hoxb4 (ENSMAUG00000009367) #21	Hoxb3 (ENSMAUG00000011251) #22	Hoxb2 (ENSMAUG00000021979) #23	Hoxb1 (ENSMAUG00000013237) #24	Skap1 (ENSMAUG00000022191) #25	Snx11 (ENSMAUG00000021528) #26	ENSMAUG00000003463 #27	Nfe2l1 (ENSMAUG00000020456) #28	Copz2 (ENSMAUG00000010560) #29	Cdk5rap3 (ENSMAUG00000007991) #30	Pnpo (ENSMAUG00000021706) #32	Sp2 (ENSMAUG00000019269) #33	Sp6 (ENSMAUG00000009667)	Scrn2 (ENSMAUG00000010014)	Lrrc46 (ENSMAUG00000019416)	Mrpl10 (ENSMAUG00000000820)	Osbpl7 (ENSMAUG00000013876)
Chinese hamster chok1gshd	MODERN SPECIES	33	Lrrc46 (ENSCGRG00001019758)	Scrn2 (ENSCGRG00001022143)	Sp6 (ENSCGRG00001002797)	Sp2 (ENSCGRG00001010976) #33	Pnpo (ENSCGRG00001018189) #32	Prr15l (ENSCGRG00001008926) #31	Cdk5rap3 (ENSCGRG00001006966) #30	Copz2 (ENSCGRG00001014767) #29	Nfe2l1 (ENSCGRG00001015287) #28	Cbx1 (ENSCGRG00001014799) ##27	Snx11 (ENSCGRG00001022221) #26	ENSCGRG00001020759 #25	ENSCGRG00001023355 #25	Hoxb1 (ENSCGRG00001024619) #24	Hoxb2 (ENSCGRG00001017587) #23	Hoxb3 (ENSCGRG00001016667) #22	Hoxb4 (ENSCGRG00001022431) #21	Hoxb5 (ENSCGRG00001016167) #20	Hoxb6 (ENSCGRG00001015674) #19	Hoxb7 (ENSCGRG00001021590) #18	Hoxb8 (ENSCGRG00001020235) #17	Hoxb9 (ENSCGRG00001015314) #16	Hoxb13 (ENSCGRG00001015060) #13	Ttll6 (ENSCGRG00001018398) #12	ENSCGRG00001011435 #11	ENSCGRG00001010560	ENSCGRG00001022606	Ube2z (ENSCGRG00001019150) #9	Snf8 (ENSCGRG00001000737) #8	Gip (ENSCGRG00001021533) #7	ENSCGRG00001000282
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Prairie vole	MODERN SPECIES	114			ENSMOCG00000004266	ENSMOCG00000021226 #7	Snf8 (ENSMOCG00000016684) #8	Ube2z (ENSMOCG00000018241) #9	ENSMOCG00000013163	Ttll6 (ENSMOCG00000021089) #12	Hoxb13 (ENSMOCG00000021389) #13	Hoxb9 (ENSMOCG00000020312) #16	Hoxb8 (ENSMOCG00000018435) #17	Hoxb7 (ENSMOCG00000020820) #18	Hoxb6 (ENSMOCG00000020355) #19	Hoxb5 (ENSMOCG00000014523) #20	Hoxb4 (ENSMOCG00000022964) #21	Hoxb3 (ENSMOCG00000020739) #22	Hoxb2 (ENSMOCG00000014846) #23	Hoxb1 (ENSMOCG00000002452) #24	Skap1 (ENSMOCG00000018431) #25	Snx11 (ENSMOCG00000019303) #26	Cbx1 (ENSMOCG00000001520) #27	Nfe2l1 (ENSMOCG00000016002) #28	Copz2 (ENSMOCG00000022427) #29	Cdk5rap3 (ENSMOCG00000019534) #30	Prr15l (ENSMOCG00000006695) #31	Pnpo (ENSMOCG00000011655) #32	Sp2 (ENSMOCG00000020935) #33	Sp6 (ENSMOCG00000007065)	Scrn2 (ENSMOCG00000019511)	Lrrc46 (ENSMOCG00000016707)	Mrpl10 (ENSMOCG00000019451)
Northern American deer mouse	MODERN SPECIES	21	Abi3 (ENSPEMG00000014242)	Gngt2 (ENSPEMG00000027491)	B4galnt2 (ENSPEMG00000020717)	Igf2bp1 (ENSPEMG00000021974)	Gip (ENSPEMG00000021184) #7	Snf8 (ENSPEMG00000022229) #8	Ube2z (ENSPEMG00000020953) #9	Atp5g1 (ENSPEMG00000020590)	ENSPEMG00000028729 #11	ENSPEMG00000025676 #11	Ttll6 (ENSPEMG00000021918) #12	Hoxb13 (ENSPEMG00000021511) #13	Hoxb9 (ENSPEMG00000027158) #16	Hoxb5 (ENSPEMG00000030101) #20	Hoxb4 (ENSPEMG00000029805) #21	Hoxb3 (ENSPEMG00000028692) #22	Hoxb2 (ENSPEMG00000029510) #23	Hoxb1 (ENSPEMG00000023977) #24	Skap1 (ENSPEMG00000000585) #25	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #26	Cbx1 (ENSPEMG00000020976) ##27	Nfe2l1 (ENSPEMG00000010512) #28	Copz2 (ENSPEMG00000011137) #29	Cdk5rap3 (ENSPEMG00000020712) #30	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436) #31	Pnpo (ENSPEMG00000025094) #32	Sp2 (ENSPEMG00000017112) #33	Sp6 (ENSPEMG00000001231)	Scrn2 (ENSPEMG00000020381)
Murinae	ANCESTRAL SPECIES	6	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Mus	ANCESTRAL SPECIES	2	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Steppe mouse	MODERN SPECIES	3291	Igf2bp1 (ENSMSIG00000019193)	Gip (ENSMSIG00000019162) #7	Snf8 (ENSMSIG00000019072) #8	Ube2z (ENSMSIG00000019038) #9	Atp5g1 (ENSMSIG00000018986)	ENSMSIG00000018956 #11	Ttll6 (ENSMSIG00000018881) #12	Hoxb13 (ENSMSIG00000018865) #13	Hoxb9 (ENSMSIG00000018823) #16	Hoxb8 (ENSMSIG00000018807) #17	Hoxb7 (ENSMSIG00000018805) #18	Hoxb6 (ENSMSIG00000018795) #19	Hoxb5 (ENSMSIG00000018787) #20	Hoxb4 (ENSMSIG00000018777) #21	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #22	Hoxb2 (ENSMSIG00000018769) #23	Hoxb1 (ENSMSIG00000018752) #24	Skap1 (ENSMSIG00000018601) #25	Snx11 (ENSMSIG00000018546) #26	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447) #27	Nfe2l1 (ENSMSIG00000018374) #28	Copz2 (ENSMSIG00000018337) #29	Cdk5rap3 (ENSMSIG00000018309) #30	ENSMSIG00000018270 #31	ENSMSIG00000018267 #32	Sp2 (ENSMSIG00000018237) #33	Sp6 (ENSMSIG00000018223)	Scrn2 (ENSMSIG00000018202)	Lrrc46 (ENSMSIG00000018171)
spretus	MODERN SPECIES	2	B4galnt2 (MGP_SPRETEiJ_G0017861)	Igf2bp1 (MGP_SPRETEiJ_G0017862)	Gip (MGP_SPRETEiJ_G0017863) #7	Snf8 (MGP_SPRETEiJ_G0017864) #8	Ube2z (MGP_SPRETEiJ_G0017865) #9	Atp5g1 (MGP_SPRETEiJ_G0017866)	MGP_SPRETEiJ_G0017867 #11	Ttll6 (MGP_SPRETEiJ_G0017868) #12	Hoxb13 (MGP_SPRETEiJ_G0017869) #13	Hoxb9 (MGP_SPRETEiJ_G0017870) #16	Hoxb8 (MGP_SPRETEiJ_G0017871) #17	Hoxb7 (MGP_SPRETEiJ_G0017872) #18	Hoxb6 (MGP_SPRETEiJ_G0017873) #19	Hoxb5 (MGP_SPRETEiJ_G0017874) #20	Hoxb4 (MGP_SPRETEiJ_G0017875) #21	Hoxb3 (MGP_SPRETEiJ_G0017876) #22	Hoxb2 (MGP_SPRETEiJ_G0017877) #23	Hoxb1 (MGP_SPRETEiJ_G0017878) #24	MGP_SPRETEiJ_G0017879 #25	Snx11 (MGP_SPRETEiJ_G0017880) #26	Cbx1 (MGP_SPRETEiJ_G0017881) #27	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) #28	Copz2 (MGP_SPRETEiJ_G0017884) #29	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #30	Prr15l (MGP_SPRETEiJ_G0017886) #31	Pnpo (MGP_SPRETEiJ_G0017887) #32	Sp2 (MGP_SPRETEiJ_G0017888) #33	Sp6 (MGP_SPRETEiJ_G0017889)	Scrn2 (MGP_SPRETEiJ_G0017890)	Lrrc46 (MGP_SPRETEiJ_G0017891)
Mouse	MODERN SPECIES	2	B4galnt2 (ENSMUSG00000013418)	Igf2bp1 (ENSMUSG00000013415)	Gip (ENSMUSG00000014351) #7	Snf8 (ENSMUSG00000006058) #8	Ube2z (ENSMUSG00000014349) #9	Atp5g1 (ENSMUSG00000006057)	Calcoco2 (ENSMUSG00000006056) #11	Ttll6 (ENSMUSG00000038756) #12	Hoxb13 (ENSMUSG00000049604) #13	Hoxb9 (ENSMUSG00000020875) #16	Hoxb8 (ENSMUSG00000056648) #17	Hoxb7 (ENSMUSG00000038721) #18	Hoxb6 (ENSMUSG00000000690) #19	Hoxb5 (ENSMUSG00000038700) #20	Hoxb4 (ENSMUSG00000038692) #21	Hoxb3 (ENSMUSG00000048763) #22	Hoxb2 (ENSMUSG00000075588) #23	Hoxb1 (ENSMUSG00000018973) #24	Skap1 (ENSMUSG00000057058) #25	Snx11 (ENSMUSG00000020876) #26	Cbx1 (ENSMUSG00000018666) #27	Nfe2l1 (ENSMUSG00000038615) #28	Copz2 (ENSMUSG00000018672) #29	Cdk5rap3 (ENSMUSG00000018669) #30	Prr15l (ENSMUSG00000047040) #31	Pnpo (ENSMUSG00000018659) #32	Sp2 (ENSMUSG00000018678) #33	Sp6 (ENSMUSG00000038560)	Scrn2 (ENSMUSG00000020877)	Lrrc46 (ENSMUSG00000020878)	Mrpl10 (ENSMUSG00000001445)
Ryukyu mouse	MODERN SPECIES	2	B4galnt2 (MGP_CAROLIEiJ_G0017015)	Igf2bp1 (MGP_CAROLIEiJ_G0017016)	Gip (MGP_CAROLIEiJ_G0017017) #7	Snf8 (MGP_CAROLIEiJ_G0017018) #8	MGP_CAROLIEiJ_G0017019 #9	MGP_CAROLIEiJ_G0017020	MGP_CAROLIEiJ_G0017021 #11	Ttll6 (MGP_CAROLIEiJ_G0017022) #12	Hoxb13 (MGP_CAROLIEiJ_G0017023) #13	Hoxb9 (MGP_CAROLIEiJ_G0017024) #16	Hoxb8 (MGP_CAROLIEiJ_G0017025) #17	Hoxb7 (MGP_CAROLIEiJ_G0017026) #18	Hoxb6 (MGP_CAROLIEiJ_G0017027) #19	Hoxb5 (MGP_CAROLIEiJ_G0017028) #20	Hoxb4 (MGP_CAROLIEiJ_G0017029) #21	Hoxb3 (MGP_CAROLIEiJ_G0017030) #22	Hoxb2 (MGP_CAROLIEiJ_G0017031) #23	Hoxb1 (MGP_CAROLIEiJ_G0017032) #24	Skap1 (MGP_CAROLIEiJ_G0017033) #25	Snx11 (MGP_CAROLIEiJ_G0017034) #26	Cbx1 (MGP_CAROLIEiJ_G0017035) #27	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #28	Copz2 (MGP_CAROLIEiJ_G0017038) #29	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #30	Prr15l (MGP_CAROLIEiJ_G0017040) #31	Pnpo (MGP_CAROLIEiJ_G0017041) #32	Sp2 (MGP_CAROLIEiJ_G0017042) #33	Sp6 (MGP_CAROLIEiJ_G0017043)	MGP_CAROLIEiJ_G0017044	Lrrc46 (MGP_CAROLIEiJ_G0017045)
Shrew mouse	MODERN SPECIES	5	B4galnt2 (MGP_PahariEiJ_G0018145)	MGP_PahariEiJ_G0018146	Gip (MGP_PahariEiJ_G0018147) #7	Snf8 (MGP_PahariEiJ_G0018148) #8	Ube2z (MGP_PahariEiJ_G0018149) #9	Atp5g1 (MGP_PahariEiJ_G0018150)	MGP_PahariEiJ_G0018151 #11	Ttll6 (MGP_PahariEiJ_G0018152) #12	Hoxb13 (MGP_PahariEiJ_G0018153) #13	Hoxb9 (MGP_PahariEiJ_G0018154) #16	Hoxb8 (MGP_PahariEiJ_G0018155) #17	Hoxb7 (MGP_PahariEiJ_G0018156) #18	Hoxb6 (MGP_PahariEiJ_G0018157) #19	Hoxb5 (MGP_PahariEiJ_G0018158) #20	Hoxb4 (MGP_PahariEiJ_G0018159) #21	Hoxb3 (MGP_PahariEiJ_G0018160) #22	Hoxb2 (MGP_PahariEiJ_G0018161) #23	Hoxb1 (MGP_PahariEiJ_G0018162) #24	Skap1 (MGP_PahariEiJ_G0018163) #25	Snx11 (MGP_PahariEiJ_G0018164) #26	Cbx1 (MGP_PahariEiJ_G0018165) #27	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) #28	Copz2 (MGP_PahariEiJ_G0018168) #29	Cdk5rap3 (MGP_PahariEiJ_G0018169) #30	Prr15l (MGP_PahariEiJ_G0018170) #31	Pnpo (MGP_PahariEiJ_G0018171) #32	Sp2 (MGP_PahariEiJ_G0018172) #33	Sp6 (MGP_PahariEiJ_G0018173)	Scrn2 (MGP_PahariEiJ_G0018174)	Lrrc46 (MGP_PahariEiJ_G0018175)
Rat	MODERN SPECIES	1	Abi3 (ENSRNOG00000005575)	B4galnt2 (ENSRNOG00000067203)	Igf2bp1 (ENSRNOG00000006122)	Gip (ENSRNOG00000006306) #7	Snf8 (ENSRNOG00000006500) #8	Ube2z (ENSRNOG00000006868) #9	ENSRNOG00000066153 #11	Ttll6 (ENSRNOG00000004939) #12	Hoxb13 (ENSRNOG00000007491) #13	Hoxb9 (ENSRNOG00000007573) #16	Hoxb8 (ENSRNOG00000007585) #17	Hoxb7 (ENSRNOG00000007611) #18	Hoxb6 (ENSRNOG00000007823) #19	Hoxb5 (ENSRNOG00000008010) #20	Hoxb4 (ENSRNOG00000008191) #21	Hoxb3 (ENSRNOG00000008313) #22	Hoxb2 (ENSRNOG00000008365) #23	Hoxb1 (ENSRNOG00000008506) #24	Skap1 (ENSRNOG00000023881) #25	Snx11 (ENSRNOG00000008642) #26	Cbx1 (ENSRNOG00000008689) #27	Nfe2l1 (ENSRNOG00000008830) #28	Copz2 (ENSRNOG00000009225) #29	Cdk5rap3 (ENSRNOG00000048747) #30	Prr15l (ENSRNOG00000049162) #31	Pnpo (ENSRNOG00000046493) #32	Sp2 (ENSRNOG00000010492) #33	Sp6 (ENSRNOG00000023551)	Scrn2 (ENSRNOG00000010214)	Lrrc46 (ENSRNOG00000009902)	Mrpl10 (ENSRNOG00000009567)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	B4galnt2 (ENSNGAG00000016426)	Igf2bp1 (ENSNGAG00000015679)	Gip (ENSNGAG00000020354) #7	Snf8 (ENSNGAG00000001366) #8	Ube2z (ENSNGAG00000024296) #9	ENSNGAG00000024212	ENSNGAG00000023585 #11	Ttll6 (ENSNGAG00000011763) #12	Hoxb13 (ENSNGAG00000011053) #13	Hoxb9 (ENSNGAG00000010851) #16	Hoxb8 (ENSNGAG00000010647) #17	Hoxb7 (ENSNGAG00000010205) #18	Hoxb6 (ENSNGAG00000000973) #19	Hoxb5 (ENSNGAG00000023238) #20	Hoxb4 (ENSNGAG00000021768) #21	Hoxb3 (ENSNGAG00000020227) #22	Hoxb2 (ENSNGAG00000019089) #23	Hoxb1 (ENSNGAG00000018593) #24	Skap1 (ENSNGAG00000012571) #25	Snx11 (ENSNGAG00000010446) #26	Cbx1 (ENSNGAG00000006760) #27	Nfe2l1 (ENSNGAG00000000736) #28	Copz2 (ENSNGAG00000023713) #29	ENSNGAG00000000747 #30	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432) #31	Pnpo (ENSNGAG00000020016) #32	Sp2 (ENSNGAG00000017612) #33	Sp6 (ENSNGAG00000015868)	Scrn2 (ENSNGAG00000023806)	Lrrc46 (ENSNGAG00000022557)
Lesser Egyptian jerboa	MODERN SPECIES	56	ENSJJAG00000002566	B4galnt2 (ENSJJAG00000006322)	Igf2bp1 (ENSJJAG00000002687)	Gip (ENSJJAG00000010688) #7	Snf8 (ENSJJAG00000006012) #8	ENSJJAG00000003530 #9	ENSJJAG00000010301	Ttll6 (ENSJJAG00000010253) #12	Hoxb13 (ENSJJAG00000010401) #13	Hoxb9 (ENSJJAG00000009821) #16	Hoxb8 (ENSJJAG00000002398) #17	Hoxb7 (ENSJJAG00000001284) #18	Hoxb6 (ENSJJAG00000000997) #19	Hoxb5 (ENSJJAG00000000763) #20	Hoxb4 (ENSJJAG00000002642) #21	Hoxb3 (ENSJJAG00000007804) #22	Hoxb2 (ENSJJAG00000009465) #23	Hoxb1 (ENSJJAG00000001073) #24	Skap1 (ENSJJAG00000003458) #25	ENSJJAG00000005754 #26	ENSJJAG00000007753 #27	Nfe2l1 (ENSJJAG00000006432) #28	Copz2 (ENSJJAG00000001025) #29	ENSJJAG00000002511 #30	Prr15l (ENSJJAG00000006478) #31	Pnpo (ENSJJAG00000023608) #32	Sp2 (ENSJJAG00000003061) #33	Sp6 (ENSJJAG00000006452)	Scrn2 (ENSJJAG00000023635)	Lrrc46 (ENSJJAG00000010412)	Mrpl10 (ENSJJAG00000004046)
Kangaroo rat	MODERN SPECIES	326	Abi3 (ENSDORG00000002245)	Gngt2 (ENSDORG00000023588)	Igf2bp1 (ENSDORG00000014371)	Snf8 (ENSDORG00000009262) #8	Ube2z (ENSDORG00000009258) #9	ENSDORG00000008511 #10	ENSDORG00000028385	ENSDORG00000024585 #11	Hoxb13 (ENSDORG00000008369) #13	Hoxb9 (ENSDORG00000027423) #16	Hoxb8 (ENSDORG00000007906) #17	Hoxb7 (ENSDORG00000007905) #18	Hoxb6 (ENSDORG00000023877) #19	Hoxb5 (ENSDORG00000007900) #20	Hoxb4 (ENSDORG00000007899) #21	Hoxb3 (ENSDORG00000007898) #22	Hoxb2 (ENSDORG00000007897) #23	Hoxb1 (ENSDORG00000007896) #24	Snx11 (ENSDORG00000029078) #26	Cbx1 (ENSDORG00000026399) #27	Nfe2l1 (ENSDORG00000000715) #28	Copz2 (ENSDORG00000013441) #29	Prr15l (ENSDORG00000027427) #31	Pnpo (ENSDORG00000014110) #32	Sp2 (ENSDORG00000014109) #33	Sp6 (ENSDORG00000026201)	Scrn2 (ENSDORG00000002361)	Osbpl7 (ENSDORG00000002354)	Tbx21 (ENSDORG00000013302)	Npepps (ENSDORG00000009627)	Socs7 (ENSDORG00000028979)
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.dc #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Rabbit	MODERN SPECIES	10	GNGT2 (ENSOCUG00000016331)	B4GALNT2 (ENSOCUG00000003531)	IGF2BP1 (ENSOCUG00000004411)	GIP (ENSOCUG00000004410) #7	SNF8 (ENSOCUG00000009156) #8	UBE2Z (ENSOCUG00000009159) #9	ATP5MC1 (ENSOCUG00000016225) #10	CALCOCO2 (ENSOCUG00000016209) #11	ENSOCUG00000038154	TTLL6 (ENSOCUG00000006289) #12	HOXB13 (ENSOCUG00000012816) #13	HOXB9 (ENSOCUG00000027316) #16	HOXB8 (ENSOCUG00000029186) #17	HOXB5 (ENSOCUG00000023093) #20	HOXB6 (ENSOCUG00000011560) #19	HOXB3 (ENSOCUG00000023337) #22	HOXB2 (ENSOCUG00000024951) #23	HOXB1 (ENSOCUG00000001720) #24	SKAP1 (ENSOCUG00000001717) #25	SNX11 (ENSOCUG00000002309) #26	CBX1 (ENSOCUG00000008021) #27	NFE2L1 (ENSOCUG00000022298) #28	COPZ2 (ENSOCUG00000001802) #29	CDK5RAP3 (ENSOCUG00000012325) #30	PRR15L (ENSOCUG00000017489) #31	PNPO (ENSOCUG00000017484) #32	SP2 (ENSOCUG00000027415) #33	SP6 (ENSOCUG00000023482)	SCRN2 (ENSOCUG00000009457)	LRRC46 (ENSOCUG00000009453)	MRPL10 (ENSOCUG00000009452)
Pika	MODERN SPECIES	3527													ENSOPRG00000000402	HOXB6 (ENSOPRG00000000399) #19	HOXB5 (ENSOPRG00000000394) #20	HOXB3 (ENSOPRG00000000392) #22	HOXB2 (ENSOPRG00000000389) #23
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Eulipotyphla	ANCESTRAL SPECIES	116														ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000159774 #22	ENSGT00390000017856.b #25	ENSGT00940000160113 #26
Common shrew	MODERN SPECIES	223													ENSSARG00000007970	HOXB6 (ENSSARG00000007962) #19	HOXB5 (ENSSARG00000007957) #20	ENSSARG00000007928 #22	SKAP1 (ENSSARG00000007916) #25	SNX11 (ENSSARG00000007908) #26
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Suina	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Pig	MODERN SPECIES	3	ENSSSCG00000030269	IGF2BP1 (ENSSSCG00000023128)	GIP (ENSSSCG00000026330) #7	SNF8 (ENSSSCG00000021461) #8	UBE2Z (ENSSSCG00000025638) #9	ATP5MC1 (ENSSSCG00000017544) #10	CALCOCO2 (ENSSSCG00000017543) #11	TTLL6 (ENSSSCG00000017542) #12	HOXB13 (ENSSSCG00000017541) #13	HOXB9 (ENSSSCG00000061856) #16	HOXB8 (ENSSSCG00000017537) #17	HOXB7 (ENSSSCG00000017538) #18	HOXB6 (ENSSSCG00000017539) #19	HOXB5 (ENSSSCG00000017540) #20	HOXB4 (ENSSSCG00000017535) #21	HOXB3 (ENSSSCG00000017534) #22	HOXB2 (ENSSSCG00000017533) #23	HOXB1 (ENSSSCG00000017532) #24	SKAP1 (ENSSSCG00000017527) #25	SNX11 (ENSSSCG00000017528) #26	CBX1 (ENSSSCG00000017529) #27	NFE2L1 (ENSSSCG00000017525) #28	COPZ2 (ENSSSCG00000017526) #29	CDK5RAP3 (ENSSSCG00000017524) #30	PRR15L (ENSSSCG00000054179) #31	PNPO (ENSSSCG00000032782) #32	SP2 (ENSSSCG00000017516) #33	SP6 (ENSSSCG00000017522)	SCRN2 (ENSSSCG00000017521)	LRRC46 (ENSSSCG00000017520)	MRPL10 (ENSSSCG00000017519)
Chacoan peccary	MODERN SPECIES	145	ENSCWAG00000022041	IGF2BP1 (ENSCWAG00000022044)	GIP (ENSCWAG00000022046) #7	SNF8 (ENSCWAG00000022048) #8	UBE2Z (ENSCWAG00000022050) #9	ATP5MC1 (ENSCWAG00000022052) #10	CALCOCO2 (ENSCWAG00000022056) #11	TTLL6 (ENSCWAG00000022059) #12	HOXB13 (ENSCWAG00000022063) #13	HOXB9 (ENSCWAG00000022065) #16	HOXB8 (ENSCWAG00000022066) #17	HOXB7 (ENSCWAG00000022067) #18	HOXB6 (ENSCWAG00000022069) #19	HOXB5 (ENSCWAG00000022071) #20	HOXB4 (ENSCWAG00000022074) #21	HOXB3 (ENSCWAG00000022077) #22	HOXB2 (ENSCWAG00000022078) #23	HOXB1 (ENSCWAG00000022080) #24	SKAP1 (ENSCWAG00000000046) #25	SNX11 (ENSCWAG00000000070) #26	CBX1 (ENSCWAG00000000121) #27	NFE2L1 (ENSCWAG00000000185) #28	COPZ2 (ENSCWAG00000000341) #29	CDK5RAP3 (ENSCWAG00000000377) #30	PRR15L (ENSCWAG00000000410) #31	PNPO (ENSCWAG00000000427) #32	SP2 (ENSCWAG00000000474) #33	SP6 (ENSCWAG00000000502)	SCRN2 (ENSCWAG00000000520)	LRRC46 (ENSCWAG00000000570)	MRPL10 (ENSCWAG00000000589)
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Camelidae	ANCESTRAL SPECIES	60	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.a.a ##27	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Arabian camel	MODERN SPECIES	7	B4GALNT2 (ENSCDRG00005016644)	IGF2BP1 (ENSCDRG00005016778)	GIP (ENSCDRG00005016991) #7	ENSCDRG00005017040 #8	ENSCDRG00005017061	UBE2Z (ENSCDRG00005017075) #9	ENSCDRG00005017142	CALCOCO2 (ENSCDRG00005017213) #11	TTLL6 (ENSCDRG00005017585) #12	HOXB13 (ENSCDRG00005017741) #13	HOXB9 (ENSCDRG00005017862) #16	HOXB7 (ENSCDRG00005018007) #18	HOXB6 (ENSCDRG00005018029) #19	HOXB5 (ENSCDRG00005018055) #20	HOXB4 (ENSCDRG00005018079) #21	HOXB3 (ENSCDRG00005018104) #22	HOXB2 (ENSCDRG00005018121) #23	HOXB1 (ENSCDRG00005018147) #24	SKAP1 (ENSCDRG00005018166) #25	SNX11 (ENSCDRG00005018232) #26	CBX1 (ENSCDRG00005018330) ##27	NFE2L1 (ENSCDRG00005018357) #28	ENSCDRG00005018515	COPZ2 (ENSCDRG00005018538) #29	CDK5RAP3 (ENSCDRG00005018564) #30	PRR15L (ENSCDRG00005018636) #31	SP2 (ENSCDRG00005018756) #33	SP6 (ENSCDRG00005018791)	SCRN2 (ENSCDRG00005018805)	LRRC46 (ENSCDRG00005018865)	MRPL10 (ENSCDRG00005018906)
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Pecora	ANCESTRAL SPECIES	1	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00950000185410	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Bovidae	ANCESTRAL SPECIES	2	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Bovinae	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Bos	ANCESTRAL SPECIES	1	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.i #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.e.b #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Bos_b	ANCESTRAL SPECIES	15	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.i #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.e.b #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Cow	MODERN SPECIES	10	B4GALNT2 (ENSBTAG00000009864)	IGF2BP1 (ENSBTAG00000011736)	GIP (ENSBTAG00000005045) #7	SNF8 (ENSBTAG00000018803) #8	UBE2Z (ENSBTAG00000018802) #9	ATP5MC1 (ENSBTAG00000018339)	CALCOCO2 (ENSBTAG00000007935) #11	TTLL6 (ENSBTAG00000009332) #12	HOXB13 (ENSBTAG00000014663) #13	HOXB9 (ENSBTAG00000054623) #16	HOXB8 (ENSBTAG00000054162) #17	HOXB7 (ENSBTAG00000005546) #18	HOXB6 (ENSBTAG00000050006) #19	HOXB5 (ENSBTAG00000045835) #20	HOXB4 (ENSBTAG00000039599) #21	HOXB3 (ENSBTAG00000021427) #22	HOXB2 (ENSBTAG00000009979) #23	HOXB1 (ENSBTAG00000007603) #24	SKAP1 (ENSBTAG00000000641) #25	SNX11 (ENSBTAG00000020321) #26	CBX1 (ENSBTAG00000002949) #27	NFE2L1 (ENSBTAG00000013653) #28	COPZ2 (ENSBTAG00000039954) #29	CDK5RAP3 (ENSBTAG00000014202) #30	PRR15L (ENSBTAG00000012249) #31	PNPO (ENSBTAG00000012259) #32	SP2 (ENSBTAG00000013740) #33	SP6 (ENSBTAG00000001825)	SCRN2 (ENSBTAG00000001828)	LRRC46 (ENSBTAG00000001830)	MRPL10 (ENSBTAG00000001832)
Hybrid Bos Indicus	MODERN SPECIES	10	B4GALNT2 (ENSBIXG00005007929)	IGF2BP1 (ENSBIXG00005007917)	GIP (ENSBIXG00005007892) #7	SNF8 (ENSBIXG00005007866) #8	UBE2Z (ENSBIXG00005029277) #9	ENSBIXG00005029305	CALCOCO2 (ENSBIXG00005029366) #11	ENSBIXG00005029447 #12	HOXB13 (ENSBIXG00005029474) #13	HOXB9 (ENSBIXG00005029519) #16	HOXB8 (ENSBIXG00005029530) #17	HOXB7 (ENSBIXG00005029546) #18	HOXB6 (ENSBIXG00005029554) #19	HOXB5 (ENSBIXG00005029559) #20	HOXB4 (ENSBIXG00005029577) #21	HOXB3 (ENSBIXG00005029591) #22	HOXB2 (ENSBIXG00005029607) #23	HOXB1 (ENSBIXG00005029618) #24	ENSBIXG00005029636	SKAP1 (ENSBIXG00005029657) #25	SNX11 (ENSBIXG00005029679) #26	CBX1 (ENSBIXG00005029691) #27	NFE2L1 (ENSBIXG00005029748) #28	COPZ2 (ENSBIXG00005029862) #29	CDK5RAP3 (ENSBIXG00005029886) #30	PRR15L (ENSBIXG00005029905) #31	PNPO (ENSBIXG00005029918) #32	ENSBIXG00005029934 #33	SP6 (ENSBIXG00005029948)	SCRN2 (ENSBIXG00005029976)	LRRC46 (ENSBIXG00005030008)
Bos_a	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000154688.b.k.a	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b.i #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.e.b #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Wild yak	MODERN SPECIES	319	B4GALNT2 (ENSBMUG00000000477)	IGF2BP1 (ENSBMUG00000000549)	GIP (ENSBMUG00000000594) #7	SNF8 (ENSBMUG00000000607) #8	UBE2Z (ENSBMUG00000000624) #9	ENSBMUG00000000644	CALCOCO2 (ENSBMUG00000000720) #11	ENSBMUG00000000753 #12	HOXB13 (ENSBMUG00000000770) #13	HOXB9 (ENSBMUG00000000804) #16	HOXB8 (ENSBMUG00000000824) #17	HOXB7 (ENSBMUG00000000832) #18	HOXB6 (ENSBMUG00000000839) #19	HOXB5 (ENSBMUG00000000849) #20	HOXB4 (ENSBMUG00000000867) #21	HOXB3 (ENSBMUG00000000876) #22	HOXB2 (ENSBMUG00000000885) #23	HOXB1 (ENSBMUG00000000891) #24	ENSBMUG00000000901	SKAP1 (ENSBMUG00000000925) #25	SNX11 (ENSBMUG00000000953) #26	CBX1 (ENSBMUG00000000974) #27	NFE2L1 (ENSBMUG00000001054) #28	COPZ2 (ENSBMUG00000001081) #29	CDK5RAP3 (ENSBMUG00000001110) #30	ENSBMUG00000001125 #31	PNPO (ENSBMUG00000001160) #32	SP2 (ENSBMUG00000001179) #33
Domestic yak	MODERN SPECIES	10	ABI3 (ENSBGRG00000022961)	B4GALNT2 (ENSBGRG00000022672)	IGF2BP1 (ENSBGRG00000022442)	GIP (ENSBGRG00000022397) #7	SNF8 (ENSBGRG00000022296) #8	UBE2Z (ENSBGRG00000022223) #9	ENSBGRG00000022156	CALCOCO2 (ENSBGRG00000021810) #11	TTLL6 (ENSBGRG00000021744) #12	HOXB13 (ENSBGRG00000021718) #13	HOXB9 (ENSBGRG00000021683) #16	HOXB8 (ENSBGRG00000021618) #17	HOXB6 (ENSBGRG00000021579) #19	HOXB5 (ENSBGRG00000021555) #20	HOXB4 (ENSBGRG00000021501) #21	HOXB3 (ENSBGRG00000021464) #22	HOXB2 (ENSBGRG00000021425) #23	HOXB1 (ENSBGRG00000021404) #24	SKAP1 (ENSBGRG00000021202) #25	SNX11 (ENSBGRG00000021141) #26	CBX1 (ENSBGRG00000021062) #27	NFE2L1 (ENSBGRG00000020783) #28	COPZ2 (ENSBGRG00000020574) #29	CDK5RAP3 (ENSBGRG00000020283) #30	ENSBGRG00000020194 #31	PNPO (ENSBGRG00000019898) #32	ENSBGRG00000019774 #33	SP6 (ENSBGRG00000019744)	SCRN2 (ENSBGRG00000019672)	LRRC46 (ENSBGRG00000019490)	MRPL10 (ENSBGRG00000019422)
American bison	MODERN SPECIES	3101	GNGT2 (ENSBBBG00000021294)	B4GALNT2 (ENSBBBG00000021305)	IGF2BP1 (ENSBBBG00000021334)	GIP (ENSBBBG00000021349) #7	SNF8 (ENSBBBG00000021356) #8	UBE2Z (ENSBBBG00000021371) #9	ATP5MC1 (ENSBBBG00000021377) #10	CALCOCO2 (ENSBBBG00000005726) #11	TTLL6 (ENSBBBG00000021540) #12	HOXB13 (ENSBBBG00000021546) #13	HOXB9 (ENSBBBG00000021558) #16	HOXB7 (ENSBBBG00000021565) #18	HOXB6 (ENSBBBG00000021567) #19	HOXB5 (ENSBBBG00000021577) #20	HOXB4 (ENSBBBG00000021585) #21	HOXB3 (ENSBBBG00000005740) #22	HOXB2 (ENSBBBG00000021598) #23	HOXB1 (ENSBBBG00000021601) #24	SKAP1 (ENSBBBG00000021634) #25	SNX11 (ENSBBBG00000021652) #26	ENSBBBG00000021675 ##27	NFE2L1 (ENSBBBG00000021740) #28	COPZ2 (ENSBBBG00000021782) #29	CDK5RAP3 (ENSBBBG00000021808) #30	PRR15L (ENSBBBG00000021809) #31	PNPO (ENSBBBG00000021862) #32	SP2 (ENSBBBG00000021914) #33	SP6 (ENSBBBG00000021924)	SCRN2 (ENSBBBG00000021958)	LRRC46 (ENSBBBG00000021972)	MRPL10 (ENSBBBG00000021983)
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.g.a #8	ENSGT01100000264599	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00940000154688.b.j	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Rambouillet Sheep	MODERN SPECIES	2	ENSOARG00020022839	IGF2BP1 (ENSOARG00020022766)	GIP (ENSOARG00020022695) #7	UBE2Z (ENSOARG00020022664) #9	ATP5MC1 (ENSOARG00020022590)	CALCOCO2 (ENSOARG00020022295) #11	ENSOARG00020022258 #12	SNF8 (ENSOARG00020022227) #8	HOXB13 (ENSOARG00020022195) #13	HOXB9 (ENSOARG00020022138) #16	HOXB8 (ENSOARG00020022064) #17	HOXB7 (ENSOARG00020022042) #18	HOXB6 (ENSOARG00020022021) #19	HOXB5 (ENSOARG00020022004) #20	HOXB4 (ENSOARG00020021954) #21	HOXB3 (ENSOARG00020021943) #22	HOXB2 (ENSOARG00020021907) #23	HOXB1 (ENSOARG00020021886) #24	SKAP1 (ENSOARG00020021817) #25	SNX11 (ENSOARG00020021783) #26	CBX1 (ENSOARG00020021741) #27	NFE2L1 (ENSOARG00020021460) #28	COPZ2 (ENSOARG00020021377) #29	CDK5RAP3 (ENSOARG00020021339) #30	PRR15L (ENSOARG00020021319) #31	PNPO (ENSOARG00020021017) #32	SP2 (ENSOARG00020020972) #33	SP6 (ENSOARG00020020944)	SCRN2 (ENSOARG00020020770)	LRRC46 (ENSOARG00020020663)	MRPL10 (ENSOARG00020020614)
Goat	MODERN SPECIES	10	IGF2BP1 (ENSCHIG00000022316)	GIP (ENSCHIG00000010936) #7	SNF8 (ENSCHIG00000014794) #8	ENSCHIG00000020962	UBE2Z (ENSCHIG00000003883) #9	ENSCHIG00000016881	CALCOCO2 (ENSCHIG00000025313) #11	TTLL6 (ENSCHIG00000022654) #12	HOXB13 (ENSCHIG00000026703) #13	HOXB9 (ENSCHIG00000022791) #16	HOXB8 (ENSCHIG00000015504) #17	HOXB7 (ENSCHIG00000017532) #18	HOXB6 (ENSCHIG00000008881) #19	HOXB5 (ENSCHIG00000023147) #20	HOXB4 (ENSCHIG00000025323) #21	HOXB3 (ENSCHIG00000013978) #22	HOXB2 (ENSCHIG00000025836) #23	HOXB1 (ENSCHIG00000017872) #24	ENSCHIG00000010180	ENSCHIG00000015920 #25	ENSCHIG00000026878 #25	SNX11 (ENSCHIG00000017547) #26	CBX1 (ENSCHIG00000010985) #27	NFE2L1 (ENSCHIG00000015427) #28	COPZ2 (ENSCHIG00000026544) #29	CDK5RAP3 (ENSCHIG00000025420) #30	PRR15L (ENSCHIG00000008261) #31	PNPO (ENSCHIG00000004606) #32	SP2 (ENSCHIG00000018648) #33	SP6 (ENSCHIG00000009897)	SCRN2 (ENSCHIG00000026802)
Siberian musk deer	MODERN SPECIES	1210	IGF2BP1 (ENSMMSG00000024501)	GIP (ENSMMSG00000024503) #7	ENSMMSG00000024504 #8	UBE2Z (ENSMMSG00000024505) #9	ATP5MC1 (ENSMMSG00000024506) #10	CALCOCO2 (ENSMMSG00000024509) #11	TTLL6 (ENSMMSG00000024514) #12	HOXB13 (ENSMMSG00000024516) #13	HOXB9 (ENSMMSG00000024520) #16	HOXB8 (ENSMMSG00000024522) #17	HOXB7 (ENSMMSG00000024523) #18	HOXB6 (ENSMMSG00000024525) #19	HOXB5 (ENSMMSG00000024526) #20	HOXB4 (ENSMMSG00000024528) #21	ENSMMSG00000024530	HOXB3 (ENSMMSG00000024531) #22	HOXB2 (ENSMMSG00000024532) #23	HOXB1 (ENSMMSG00000024533) #24	ENSMMSG00000024535	SKAP1 (ENSMMSG00000024536) #25	SNX11 (ENSMMSG00000024538) #26	CBX1 (ENSMMSG00000024540) #27	NFE2L1 (ENSMMSG00000024541) #28	COPZ2 (ENSMMSG00000024546) #29	CDK5RAP3 (ENSMMSG00000024548) #30	PRR15L (ENSMMSG00000024549) #31	PNPO (ENSMMSG00000024550) #32	SP2 (ENSMMSG00000024551) #33	SP6 (ENSMMSG00000018224)	SCRN2 (ENSMMSG00000018238)	LRRC46 (ENSMMSG00000018351)
Yarkand deer	MODERN SPECIES	28	IGF2BP1 (ENSCHYG00000004387)	GIP (ENSCHYG00000004425) #7	SNF8 (ENSCHYG00000004443) #8	UBE2Z (ENSCHYG00000004456) #9	ENSCHYG00000004476	ENSCHYG00000004493	ENSCHYG00000004521 #11	TTLL6 (ENSCHYG00000004571) #12	HOXB13 (ENSCHYG00000004599) #13	HOXB9 (ENSCHYG00000004623) #16	HOXB8 (ENSCHYG00000004637) #17	HOXB7 (ENSCHYG00000004645) #18	HOXB6 (ENSCHYG00000004651) #19	HOXB5 (ENSCHYG00000004658) #20	HOXB4 (ENSCHYG00000004668) #21	HOXB3 (ENSCHYG00000004670) #22	HOXB2 (ENSCHYG00000004674) #23	HOXB1 (ENSCHYG00000004684) #24	SKAP1 (ENSCHYG00000004692) #25	ENSCHYG00000004720	SNX11 (ENSCHYG00000004737) #26	CBX1 (ENSCHYG00000004750) #27	NFE2L1 (ENSCHYG00000004781) #28	COPZ2 (ENSCHYG00000004829) #29	ENSCHYG00000004851	CDK5RAP3 (ENSCHYG00000000101) #30	PRR15L (ENSCHYG00000000125) #31	PNPO (ENSCHYG00000000157) #32	SP2 (ENSCHYG00000000198) #33	SP6 (ENSCHYG00000000221)	SCRN2 (ENSCHYG00000000227)
Cetacea	ANCESTRAL SPECIES	5	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.g	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.g	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.g	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Dolphin	MODERN SPECIES	4465										HOXB9 (ENSTTRG00000012262) #16	HOXB8 (ENSTTRG00000012260) #17	ENSTTRG00000012257	HOXB6 (ENSTTRG00000012252) #19	HOXB5 (ENSTTRG00000012251) #20	HOXB4 (ENSTTRG00000012249) #21	HOXB3 (ENSTTRG00000012246) #22	HOXB2 (ENSTTRG00000012244) #23	HOXB1 (ENSTTRG00000012240) #24
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.g	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Vaquita	MODERN SPECIES	12	ENSPSNG00000016103	IGF2BP1 (ENSPSNG00000016168)	GIP (ENSPSNG00000016483) #7	SNF8 (ENSPSNG00000016533) #8	UBE2Z (ENSPSNG00000016576) #9	ENSPSNG00000016635	CALCOCO2 (ENSPSNG00000016749) #11	TTLL6 (ENSPSNG00000017015) #12	HOXB13 (ENSPSNG00000017233) #13	HOXB9 (ENSPSNG00000017398) #16	HOXB8 (ENSPSNG00000017436) #17	HOXB7 (ENSPSNG00000017482) #18	HOXB6 (ENSPSNG00000017525) #19	HOXB5 (ENSPSNG00000017559) #20	HOXB4 (ENSPSNG00000017604) #21	HOXB3 (ENSPSNG00000017636) #22	HOXB2 (ENSPSNG00000017708) #23	HOXB1 (ENSPSNG00000017728) #24	SKAP1 (ENSPSNG00000017760) #25	SNX11 (ENSPSNG00000017889) #26	ENSPSNG00000017984 #27	NFE2L1 (ENSPSNG00000018052) #28	COPZ2 (ENSPSNG00000018262) #29	CDK5RAP3 (ENSPSNG00000018321) #30	PRR15L (ENSPSNG00000018399) #31	PNPO (ENSPSNG00000018423) #32	SP2 (ENSPSNG00000018528) #33	SP6 (ENSPSNG00000018568)	SCRN2 (ENSPSNG00000018588)	LRRC46 (ENSPSNG00000018676)	ENSPSNG00000018757
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.g	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Beluga whale	MODERN SPECIES	26	B4GALNT2 (ENSDLEG00000004906)	IGF2BP1 (ENSDLEG00000004887)	GIP (ENSDLEG00000004882) #7	SNF8 (ENSDLEG00000004876) #8	UBE2Z (ENSDLEG00000004871) #9	ATP5G1 (ENSDLEG00000004867)	CALCOCO2 (ENSDLEG00000004861) #11	TTLL6 (ENSDLEG00000004850) #12	HOXB13 (ENSDLEG00000004844) #13	HOXB9 (ENSDLEG00000004838) #16	HOXB8 (ENSDLEG00000004837) #17	HOXB7 (ENSDLEG00000004834) #18	HOXB6 (ENSDLEG00000004829) #19	HOXB5 (ENSDLEG00000004826) #20	HOXB4 (ENSDLEG00000004820) #21	HOXB3 (ENSDLEG00000004817) #22	HOXB2 (ENSDLEG00000004813) #23	HOXB1 (ENSDLEG00000004807) #24	SKAP1 (ENSDLEG00000004779) #25	SNX11 (ENSDLEG00000004765) #26	CBX1 (ENSDLEG00000004754) ##27	NFE2L1 (ENSDLEG00000004744) #28	ENSDLEG00000004734	COPZ2 (ENSDLEG00000004721) #29	CDK5RAP3 (ENSDLEG00000004709) #30	PRR15L (ENSDLEG00000004704) #31	PNPO (ENSDLEG00000004701) #32	SP2 (ENSDLEG00000004697) #33	SP6 (ENSDLEG00000004694)	SCRN2 (ENSDLEG00000004688)	ENSDLEG00000004684
Narwhal	MODERN SPECIES	316	B4GALNT2 (ENSMMNG00015022052)	IGF2BP1 (ENSMMNG00015022053)	GIP (ENSMMNG00015022055) #7	ENSMMNG00015022056 #8	UBE2Z (ENSMMNG00015022057) #9	ENSMMNG00015022058	CALCOCO2 (ENSMMNG00015022060) #11	TTLL6 (ENSMMNG00015015987) #12	HOXB13 (ENSMMNG00015016080) #13	HOXB9 (ENSMMNG00015016160) #16	HOXB8 (ENSMMNG00015016175) #17	HOXB7 (ENSMMNG00015016197) #18	HOXB6 (ENSMMNG00015016215) #19	HOXB5 (ENSMMNG00015016235) #20	HOXB4 (ENSMMNG00015016252) #21	HOXB3 (ENSMMNG00015016287) #22	HOXB2 (ENSMMNG00015016324) #23	HOXB1 (ENSMMNG00015016356) #24	SKAP1 (ENSMMNG00015016386) #25	SNX11 (ENSMMNG00015016452) #26	CBX1 (ENSMMNG00015016582) #27	NFE2L1 (ENSMMNG00015016634) #28	COPZ2 (ENSMMNG00015016743) #29	CDK5RAP3 (ENSMMNG00015016820) #30	PRR15L (ENSMMNG00015016868) #31	PNPO (ENSMMNG00015016895) #32	SP2 (ENSMMNG00015016948) #33	SP6 (ENSMMNG00015016969)	SCRN2 (ENSMMNG00015016985)	LRRC46 (ENSMMNG00015017038)	MRPL10 (ENSMMNG00015017084)
Sperm whale	MODERN SPECIES	5	B4GALNT2 (ENSPCTG00005004337)	IGF2BP1 (ENSPCTG00005004404)	GIP (ENSPCTG00005004443) #7	ENSPCTG00005004464	SNF8 (ENSPCTG00005004481) #8	ATP5MC1 (ENSPCTG00005004516) #9	CALCOCO2 (ENSPCTG00005004611) #11	TTLL6 (ENSPCTG00005004739) #12	HOXB13 (ENSPCTG00005004788) #13	HOXB9 (ENSPCTG00005004847) #16	HOXB8 (ENSPCTG00005004864) #17	HOXB7 (ENSPCTG00005004882) #18	HOXB6 (ENSPCTG00005004887) #19	HOXB5 (ENSPCTG00005004905) #20	HOXB4 (ENSPCTG00005004920) #21	HOXB3 (ENSPCTG00005004930) #22	HOXB2 (ENSPCTG00005004951) #23	HOXB1 (ENSPCTG00005004966) #24	SKAP1 (ENSPCTG00005004985) #25	CBX1 (ENSPCTG00005005034) #27	ENSPCTG00005005083 #33	TBX21 (ENSPCTG00005005105)	TBKBP1 (ENSPCTG00005005144)	KPNB1 (ENSPCTG00005005195)	NPEPPS (ENSPCTG00005005245)	GPR179 (ENSPCTG00005005545)	SOCS7 (ENSPCTG00005005634)	ARHGAP23 (ENSPCTG00005005753)	SRCIN1 (ENSPCTG00005005823)	ENSPCTG00005006189	PSMB3 (ENSPCTG00005006224)
Blue whale	MODERN SPECIES	12	IGF2BP1 (ENSBMSG00010016894)	GIP (ENSBMSG00010017026) #7	SNF8 (ENSBMSG00010017067) #8	UBE2Z (ENSBMSG00010017102) #9	ATP5MC1 (ENSBMSG00010017142) #10	ENSBMSG00010017179	CALCOCO2 (ENSBMSG00010017255) #11	TTLL6 (ENSBMSG00010017444) #12	HOXB13 (ENSBMSG00010017547) #13	HOXB9 (ENSBMSG00010017655) #16	HOXB8 (ENSBMSG00010017685) #17	HOXB7 (ENSBMSG00010017724) #18	HOXB6 (ENSBMSG00010017746) #19	HOXB5 (ENSBMSG00010017772) #20	HOXB4 (ENSBMSG00010017814) #21	HOXB3 (ENSBMSG00010017838) #22	HOXB2 (ENSBMSG00010017860) #23	HOXB1 (ENSBMSG00010017892) #24	SKAP1 (ENSBMSG00010017921) #25	SNX11 (ENSBMSG00010018006) #26	CBX1 (ENSBMSG00010018099) #27	NFE2L1 (ENSBMSG00010018163) #28	COPZ2 (ENSBMSG00010018306) #29	CDK5RAP3 (ENSBMSG00010018481) #30	PRR15L (ENSBMSG00010018513) #31	PNPO (ENSBMSG00010018544) #32	SP2 (ENSBMSG00010018607) #33	SP6 (ENSBMSG00010018628)	ENSBMSG00010018650	ENSBMSG00010018673	ENSBMSG00010018688
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Canidae	ANCESTRAL SPECIES	2	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.c	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.c	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Dingo	MODERN SPECIES	150	ENSCAFG00020023382	IGF2BP1 (ENSCAFG00020023369)	GIP (ENSCAFG00020023360) #7	SNF8 (ENSCAFG00020023354) #8	UBE2Z (ENSCAFG00020023351) #9	ENSCAFG00020023349	CALCOCO2 (ENSCAFG00020023334) #11	TTLL6 (ENSCAFG00020023324) #12	HOXB13 (ENSCAFG00020023319) #13	HOXB9 (ENSCAFG00020023312) #16	HOXB8 (ENSCAFG00020023306) #17	ENSCAFG00020023303 #18	HOXB6 (ENSCAFG00020023302) #19	HOXB5 (ENSCAFG00020023301) #20	HOXB4 (ENSCAFG00020023297) #21	HOXB3 (ENSCAFG00020023294) #22	HOXB2 (ENSCAFG00020023293) #23	HOXB1 (ENSCAFG00020023290) #24	SKAP1 (ENSCAFG00020023287) #25	SNX11 (ENSCAFG00020023282) #26	CBX1 (ENSCAFG00020023275) #27	NFE2L1 (ENSCAFG00020023270) #28	COPZ2 (ENSCAFG00020023263) #29	CDK5RAP3 (ENSCAFG00020023258) #30	PRR15L (ENSCAFG00020023256) #31	PNPO (ENSCAFG00020023249) #32	SP2 (ENSCAFG00020023246) #33	SP6 (ENSCAFG00020023243)	SCRN2 (ENSCAFG00020023238)	LRRC46 (ENSCAFG00020023236)	MRPL10 (ENSCAFG00020023232)
Dog	MODERN SPECIES	37	B4GALNT2 (ENSCAFG00845010693)	IGF2BP1 (ENSCAFG00845010596)	GIP (ENSCAFG00845010532) #7	SNF8 (ENSCAFG00845010455) #8	UBE2Z (ENSCAFG00845010395) #9	ATP5MC1 (ENSCAFG00845010336)	CALCOCO2 (ENSCAFG00845010119) #11	TTLL6 (ENSCAFG00845010017) #12	HOXB13 (ENSCAFG00845009992) #13	HOXB9 (ENSCAFG00845009956) #16	HOXB8 (ENSCAFG00845009931) #17	HOXB7 (ENSCAFG00845009899) #18	HOXB6 (ENSCAFG00845009871) #19	HOXB5 (ENSCAFG00845009832) #20	HOXB4 (ENSCAFG00845017264) #21	HOXB3 (ENSCAFG00845017188) #22	HOXB2 (ENSCAFG00845017142) #23	HOXB1 (ENSCAFG00845017096) #24	SKAP1 (ENSCAFG00845016959) #25	SNX11 (ENSCAFG00845016720) #26	CBX1 (ENSCAFG00845016596) #27	NFE2L1 (ENSCAFG00845016388) #28	COPZ2 (ENSCAFG00845016156) #29	CDK5RAP3 (ENSCAFG00845016051) #30	ENSCAFG00845016000	PRR15L (ENSCAFG00845015978) #31	PNPO (ENSCAFG00845015876) #32	SP2 (ENSCAFG00845015786) #33	SP6 (ENSCAFG00845015746)	SCRN2 (ENSCAFG00845015686)	LRRC46 (ENSCAFG00845015603)
Red fox	MODERN SPECIES	20	ENSVVUG00000003456	IGF2BP1 (ENSVVUG00000003451)	GIP (ENSVVUG00000003440) #7	SNF8 (ENSVVUG00000003434) #8	UBE2Z (ENSVVUG00000003424) #9	ATP5MC1 (ENSVVUG00000003411)	CALCOCO2 (ENSVVUG00000003399) #11	TTLL6 (ENSVVUG00000003393) #12	HOXB13 (ENSVVUG00000003382) #13	HOXB9 (ENSVVUG00000003367) #16	HOXB8 (ENSVVUG00000003366) #17	HOXB7 (ENSVVUG00000003360) #18	HOXB6 (ENSVVUG00000003359) #19	HOXB5 (ENSVVUG00000003354) #20	ENSVVUG00000003340 #21	HOXB3 (ENSVVUG00000003329) #22	HOXB2 (ENSVVUG00000003328) #23	HOXB1 (ENSVVUG00000003325) #24	SKAP1 (ENSVVUG00000003297) #25	SNX11 (ENSVVUG00000003276) #26	ENSVVUG00000003272 #27	NFE2L1 (ENSVVUG00000003262) #28	COPZ2 (ENSVVUG00000003249) #29	CDK5RAP3 (ENSVVUG00000003227) #30	PRR15L (ENSVVUG00000003218) #31	PNPO (ENSVVUG00000003178) #32	SP2 (ENSVVUG00000003171) #33	SP6 (ENSVVUG00000003167)	SCRN2 (ENSVVUG00000003154)	LRRC46 (ENSVVUG00000003146)	MRPL10 (ENSVVUG00000003141)
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Ursidae	ANCESTRAL SPECIES	18	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Giant Panda	MODERN SPECIES	4	IGF2BP1 (ENSAMEG00000005087)	GIP (ENSAMEG00000005081) #7	SNF8 (ENSAMEG00000005062) #8	UBE2Z (ENSAMEG00000005049) #9	ATP5MC1 (ENSAMEG00000005038)	CALCOCO2 (ENSAMEG00000005015) #11	ENSAMEG00000005000 #12	HOXB13 (ENSAMEG00000026873) #13	ENSAMEG00000026258	HOXB9 (ENSAMEG00000024921) #16	ENSAMEG00000004982 #17	HOXB7 (ENSAMEG00000004977) #18	HOXB6 (ENSAMEG00000004971) #19	HOXB5 (ENSAMEG00000004967) #20	HOXB4 (ENSAMEG00000028329) #21	HOXB3 (ENSAMEG00000027375) #22	HOXB2 (ENSAMEG00000030987) #23	HOXB1 (ENSAMEG00000004935) #24	SKAP1 (ENSAMEG00000004919) #25	SNX11 (ENSAMEG00000004898) #26	CBX1 (ENSAMEG00000004890) #27	NFE2L1 (ENSAMEG00000004881) #28	COPZ2 (ENSAMEG00000004850) #29	ENSAMEG00000030152	CDK5RAP3 (ENSAMEG00000004818) #30	PRR15L (ENSAMEG00000025744) #31	PNPO (ENSAMEG00000004786) #32	SP2 (ENSAMEG00000004772) #33	SCRN2 (ENSAMEG00000004751)	LRRC46 (ENSAMEG00000004734)	MRPL10 (ENSAMEG00000004722)
Ursus	ANCESTRAL SPECIES	67	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
American black bear	MODERN SPECIES	4290																HOXB3 (ENSUAMG00000008864) #22	HOXB2 (ENSUAMG00000008866) #23	HOXB1 (ENSUAMG00000008868) #24
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00990000209473	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
American mink	MODERN SPECIES	92	IGF2BP1 (ENSNVIG00000006377)	GIP (ENSNVIG00000006361) #7	ENSNVIG00000006352 #8	ENSNVIG00000006339	UBE2Z (ENSNVIG00000006316) #9	ENSNVIG00000006295	CALCOCO2 (ENSNVIG00000006167) #11	TTLL6 (ENSNVIG00000006132) #12	HOXB13 (ENSNVIG00000006117) #13	HOXB9 (ENSNVIG00000006082) #16	HOXB8 (ENSNVIG00000006066) #17	HOXB7 (ENSNVIG00000006060) #18	HOXB6 (ENSNVIG00000006053) #19	HOXB5 (ENSNVIG00000006049) #20	HOXB4 (ENSNVIG00000006040) #21	HOXB3 (ENSNVIG00000006032) #22	HOXB2 (ENSNVIG00000006024) #23	HOXB1 (ENSNVIG00000006017) #24	ENSNVIG00000006009	SKAP1 (ENSNVIG00000005974) #25	SNX11 (ENSNVIG00000005959) #26	CBX1 (ENSNVIG00000005946) #27	NFE2L1 (ENSNVIG00000005857) #28	ENSNVIG00000005842	COPZ2 (ENSNVIG00000005837) #29	CDK5RAP3 (ENSNVIG00000005742) #30	PR15L (ENSNVIG00000005731) #31	PNPO (ENSNVIG00000005692) #32	SP2 (ENSNVIG00000005673) #33	SP6 (ENSNVIG00000005667)	SCRN2 (ENSNVIG00000005641)
Felidae	ANCESTRAL SPECIES	8	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.f.a	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000013771.p	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a
Cat	MODERN SPECIES	245	B4GALNT2 (ENSFCAG00000018523)	IGF2BP1 (ENSFCAG00000002454)	GIP (ENSFCAG00000008946) #7	SNF8 (ENSFCAG00000008944) #8	UBE2Z (ENSFCAG00000045462) #9	ENSFCAG00000002344	CALCOCO2 (ENSFCAG00000010622) #11	TTLL6 (ENSFCAG00000010617) #12	HOXB13 (ENSFCAG00000002120) #13	HOXB9 (ENSFCAG00000035234) #16	HOXB8 (ENSFCAG00000036979) #17	HOXB7 (ENSFCAG00000002118) #18	HOXB6 (ENSFCAG00000034768) #19	HOXB5 (ENSFCAG00000039068) #20	HOXB4 (ENSFCAG00000051422) #21	HOXB3 (ENSFCAG00000006408) #22	HOXB2 (ENSFCAG00000045039) #23	HOXB1 (ENSFCAG00000028151) #24	ENSFCAG00000034133	SKAP1 (ENSFCAG00000004784) #25	SNX11 (ENSFCAG00000009371) #26	CBX1 (ENSFCAG00000006056) ##27	NFE2L1 (ENSFCAG00000009369) #28	COPZ2 (ENSFCAG00000034233) #29	CDK5RAP3 (ENSFCAG00000009367) #30	PRR15L (ENSFCAG00000009366) #31	PNPO (ENSFCAG00000001300) #32	SP2 (ENSFCAG00000009365) #33	SP6 (ENSFCAG00000009363)	SCRN2 (ENSFCAG00000009362)	LRRC46 (ENSFCAG00000045119)
Panthera	ANCESTRAL SPECIES	14	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.f.a	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000013771.p	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00950000185410	ENSGT00390000004405.b #29	ENSGT00940000154534.a #31	ENSGT00390000000713 #30	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.f.a	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000013771.p	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00940000154534.a #31	ENSGT00390000000713 #30	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
leopard	MODERN SPECIES	67	B4GALNT2 (ENSPPRG00000008636)	IGF2BP1 (ENSPPRG00000008067)	GIP (ENSPPRG00000007119) #7	ENSPPRG00000007008 #8	UBE2Z (ENSPPRG00000005626) #9	ENSPPRG00000005588	CALCOCO2 (ENSPPRG00000004550) #11	TTLL6 (ENSPPRG00000003004) #12	HOXB13 (ENSPPRG00000001633) #13	HOXB9 (ENSPPRG00000001578) #16	HOXB8 (ENSPPRG00000001156) #17	HOXB7 (ENSPPRG00000000666) #18	HOXB6 (ENSPPRG00000000532) #19	HOXB5 (ENSPPRG00000000333) #20	HOXB4 (ENSPPRG00000000220) #21	HOXB3 (ENSPPRG00000022415) #22	HOXB2 (ENSPPRG00000020926) #23	HOXB1 (ENSPPRG00000017656) #24	ENSPPRG00000017115	ENSPPRG00000016613	SKAP1 (ENSPPRG00000015336) #25	SNX11 (ENSPPRG00000012061) #26	CBX1 (ENSPPRG00000009475) #27	NFE2L1 (ENSPPRG00000009101) #28	COPZ2 (ENSPPRG00000006801) #29	CDK5RAP3 (ENSPPRG00000006376) #30	PNPO (ENSPPRG00000005037) #32	SP2 (ENSPPRG00000003332) #33	SP6 (ENSPPRG00000016089)	SCRN2 (ENSPPRG00000002730)	LRRC46 (ENSPPRG00000001915)
lion	MODERN SPECIES	14	IGF2BP1 (ENSPLOG00000021207)	GIP (ENSPLOG00000021311) #7	SNF8 (ENSPLOG00000021370) #8	UBE2Z (ENSPLOG00000021399) #9	ENSPLOG00000021422	CALCOCO2 (ENSPLOG00000021469) #11	TTLL6 (ENSPLOG00000021506) #12	HOXB13 (ENSPLOG00000021590) #13	ENSPLOG00000021606	HOXB9 (ENSPLOG00000021630) #16	HOXB8 (ENSPLOG00000021645) #17	HOXB7 (ENSPLOG00000021659) #18	HOXB6 (ENSPLOG00000021669) #19	HOXB5 (ENSPLOG00000021683) #20	HOXB4 (ENSPLOG00000021697) #21	HOXB3 (ENSPLOG00000021711) #22	HOXB2 (ENSPLOG00000021733) #23	HOXB1 (ENSPLOG00000021742) #24	ENSPLOG00000021761	SKAP1 (ENSPLOG00000021790) #25	SNX11 (ENSPLOG00000021872) #26	CBX1 (ENSPLOG00000021907) #27	NFE2L1 (ENSPLOG00000021931) #28	COPZ2 (ENSPLOG00000021972) #29	CDK5RAP3 (ENSPLOG00000022033) #30	PRR15L (ENSPLOG00000022093) #31	SP2 (ENSPLOG00000022101) #33	SP6 (ENSPLOG00000022115)	SCRN2 (ENSPLOG00000022130)	LRRC46 (ENSPLOG00000005433)	MRPL10 (ENSPLOG00000005459)
Tiger	MODERN SPECIES	43	ENSPTIG00000009967	CIR1 (ENSPTIG00000008708)	SCRN3 (ENSPTIG00000003437)	GPR155 (ENSPTIG00000018965)	WIPF1 (ENSPTIG00000016801)	CHRNA1 (ENSPTIG00000012090)	CHN1 (ENSPTIG00000006887)	ATF2 (ENSPTIG00000017517)	ATP5MC3 (ENSPTIG00000016881) ##10	LNPK (ENSPTIG00000016532)	HOXD13 (ENSPTIG00000016212)	HOXD10 (ENSPTIG00000015771)	ENSPTIG00000006835	ENSPTIG00000015581	HOXD4 (ENSPTIG00000015199)	ENSPTIG00000013485 #22	MTX2 (ENSPTIG00000011503)	HNRNPA3 (ENSPTIG00000008598)	NFE2L2 (ENSPTIG00000007874) ##28
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.b	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Equus	ANCESTRAL SPECIES		ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.b	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Horse	MODERN SPECIES	2	B4GALNT2 (ENSECAG00000013354)	IGF2BP1 (ENSECAG00000009723)	GIP (ENSECAG00000008172) #7	ENSECAG00000046431	SNF8 (ENSECAG00000022092) #8	UBE2Z (ENSECAG00000021160) #9	ATP5MC1 (ENSECAG00000019908)	CALCOCO2 (ENSECAG00000015498) #11	ENSECAG00000059603 #12	TTLL6 (ENSECAG00000014417) #12	HOXB13 (ENSECAG00000013619) #13	HOXB9 (ENSECAG00000036001) #16	HOXB8 (ENSECAG00000034473) #18	HOXB5 (ENSECAG00000012439) #20	HOXB4 (ENSECAG00000028576) #21	HOXB3 (ENSECAG00000002707) #22	HOXB2 (ENSECAG00000012423) #23	HOXB1 (ENSECAG00000011628) #24	SKAP1 (ENSECAG00000010544) #25	SNX11 (ENSECAG00000008117) #26	CBX1 (ENSECAG00000008048) #27	NFE2L1 (ENSECAG00000007777) #28	COPZ2 (ENSECAG00000024471) #29	CDK5RAP3 (ENSECAG00000018688) #30	PRR15L (ENSECAG00000002658) #31	PNPO (ENSECAG00000014995) #32	SP2 (ENSECAG00000012859) #33	SP6 (ENSECAG00000012853)	SCRN2 (ENSECAG00000009826)	LRRC46 (ENSECAG00000007543)	OSBPL7 (ENSECAG00000019067)
Donkey	MODERN SPECIES	4	GIP (ENSEASG00005000385) #7	SNF8 (ENSEASG00005000402) #8	ENSEASG00005030756	UBE2Z (ENSEASG00005000404) #9	ENSEASG00005032484	ENSEASG00005026420 #11	CALCOCO2 (ENSEASG00005000430) #11	ENSEASG00005037375 #12	ENSEASG00005000438 #12	HOXB13 (ENSEASG00005025083) #13	HOXB9 (ENSEASG00005000527) #16	HOXB8 (ENSEASG00005024978) #17	HOXB7 (ENSEASG00005000556) #18	HOXB5 (ENSEASG00005000563) #20	HOXB6 (ENSEASG00005000560) #19	HOXB3 (ENSEASG00005000581) #22	HOXB2 (ENSEASG00005000585) #23	HOXB1 (ENSEASG00005000594) #24	SKAP1 (ENSEASG00005000601) #25	SNX11 (ENSEASG00005000605) #26	CBX1 (ENSEASG00005000607) #27	NFE2L1 (ENSEASG00005000634) #28	COPZ2 (ENSEASG00005000641) #29	CDK5RAP3 (ENSEASG00005000658) #30	PRR15L (ENSEASG00005000660) #31	PNPO (ENSEASG00005028794) #32	SP2 (ENSEASG00005000667) #33	SP6 (ENSEASG00005036407)	SCRN2 (ENSEASG00005000671)	LRRC46 (ENSEASG00005000676)	MRPL10 (ENSEASG00005027403)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.b	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Megabat	MODERN SPECIES	334								HOXB13 (ENSPVAG00000015531) #13	ENSPVAG00000015530	HOXB8 (ENSPVAG00000015529) #17	HOXB7 (ENSPVAG00000015528) #18	ENSPVAG00000015526	HOXB6 (ENSPVAG00000015525) #19	HOXB5 (ENSPVAG00000015524) #20	HOXB4 (ENSPVAG00000015523) #21	HOXB3 (ENSPVAG00000015522) #22	ENSPVAG00000015521 #23	HOXB1 (ENSPVAG00000015520) #24	SKAP1 (ENSPVAG00000015519) #25	SNX11 (ENSPVAG00000015518) #26
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720.b	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00980000199681	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d.b #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Greater horseshoe bat	MODERN SPECIES	13	GIP (ENSRFEG00010021740) #7	SNF8 (ENSRFEG00010021745) #8	UBE2Z (ENSRFEG00010021755) #9	ENSRFEG00010021766	CALCOCO2 (ENSRFEG00010021784) #11	ENSRFEG00010021798	TTLL6 (ENSRFEG00010021801) #12	HOXB13 (ENSRFEG00010021808) #13	HOXB9 (ENSRFEG00010021814) #16	HOXB8 (ENSRFEG00010021818) #17	HOXB7 (ENSRFEG00010021823) #18	HOXB6 (ENSRFEG00010021831) #19	HOXB5 (ENSRFEG00010021836) #20	HOXB4 (ENSRFEG00010021844) #21	ENSRFEG00010021849	HOXB3 (ENSRFEG00010021853) #22	HOXB2 (ENSRFEG00010021859) #23	HOXB1 (ENSRFEG00010021864) #24	SKAP1 (ENSRFEG00010021866) #25	SNX11 (ENSRFEG00010021879) #26	CBX1 (ENSRFEG00010021893) #27	NFE2L1 (ENSRFEG00010021900) #28	COPZ2 (ENSRFEG00010021918) #29	CDK5RAP3 (ENSRFEG00010021928) #30	PRR15L (ENSRFEG00010021936) #31	PNPO (ENSRFEG00010021942) #32	SP2 (ENSRFEG00010021950) #33	SP6 (ENSRFEG00010021957)	SCRN2 (ENSRFEG00010021961)	LRRC46 (ENSRFEG00010008197)	MRPL10 (ENSRFEG00010008230)
Microbat	MODERN SPECIES	1191	ENSMLUG00000024310	B4GALNT2 (ENSMLUG00000012945)	ENSMLUG00000016891	GIP (ENSMLUG00000011785) #7	SNF8 (ENSMLUG00000011769) #8	UBE2Z (ENSMLUG00000011750) #9	ENSMLUG00000011738	CALCOCO2 (ENSMLUG00000014073) #11	TTLL6 (ENSMLUG00000014065) #12	ENSMLUG00000029480 #13	HOXB9 (ENSMLUG00000011677) #16	HOXB7 (ENSMLUG00000002609) #18	HOXB6 (ENSMLUG00000010649) #19	ENSMLUG00000014513 #20	ENSMLUG00000027291	HOXB3 (ENSMLUG00000008445) #22	HOXB1 (ENSMLUG00000008429) #24	SKAP1 (ENSMLUG00000005037) #25	SNX11 (ENSMLUG00000005033) #26	CBX1 (ENSMLUG00000005030) #27	NFE2L1 (ENSMLUG00000005024) #28	CDK5RAP3 (ENSMLUG00000005014) #30	PRR15L (ENSMLUG00000005012) #31	PNPO (ENSMLUG00000005003) #32	SP2 (ENSMLUG00000005000) #33	SCRN2 (ENSMLUG00000006417)	LRRC46 (ENSMLUG00000006409)	MRPL10 (ENSMLUG00000006405)	OSBPL7 (ENSMLUG00000006392)	TBX21 (ENSMLUG00000014542)	TBKBP1 (ENSMLUG00000014537)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000159774 #22
Armadillo	MODERN SPECIES	1281																HOXB3 (ENSDNOG00000043480) #22
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Tenrec	MODERN SPECIES	1998																HOXB3 (ENSETEG00000007761) #22
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Elephant	MODERN SPECIES	310	GIP (ENSLAFG00000004536) #7	SNF8 (ENSLAFG00000006599) #8	UBE2Z (ENSLAFG00000006606) #9	ATP5MC1 (ENSLAFG00000004537) #10	CALCOCO2 (ENSLAFG00000016693) #11	ENSLAFG00000027009	TTLL6 (ENSLAFG00000003368) #12	ENSLAFG00000026602	HOXB13 (ENSLAFG00000011262) #13	HOXB9 (ENSLAFG00000013600) #16	HOXB8 (ENSLAFG00000030682) #17	HOXB7 (ENSLAFG00000030637) #18	HOXB6 (ENSLAFG00000013593) #19	HOXB5 (ENSLAFG00000013590) #20	HOXB4 (ENSLAFG00000013588) #21	HOXB3 (ENSLAFG00000030335) #22	ENSLAFG00000030505	HOXB2 (ENSLAFG00000030161) #23	ENSLAFG00000031610 #24	SKAP1 (ENSLAFG00000018530) #25	SNX11 (ENSLAFG00000018529) #26	CBX1 (ENSLAFG00000018526) #27	NFE2L1 (ENSLAFG00000018523) #28	ENSLAFG00000015209 #29	ENSLAFG00000030284	CDK5RAP3 (ENSLAFG00000000339) #30	PRR15L (ENSLAFG00000015553) #31	PNPO (ENSLAFG00000015550) #32	SP2 (ENSLAFG00000021817) #33	SP6 (ENSLAFG00000010701)	SCRN2 (ENSLAFG00000025964)
Hyrax	MODERN SPECIES	9097																HOXB3 (ENSPCAG00000007683) #22	HOXB2 (ENSPCAG00000007667) #23
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Opossum	MODERN SPECIES	1	ENSMODG00000047325	IGF2BP1 (ENSMODG00000012268)	ENSMODG00000028269 #7	SNF8 (ENSMODG00000012276) #8	UBE2Z (ENSMODG00000046619) #9	ENSMODG00000012296	ENSMODG00000029509 #11	ENSMODG00000012306 #11	ENSMODG00000025670 #12	HOXB13 (ENSMODG00000012310) #13	HOXB9 (ENSMODG00000012329) #16	HOXB7 (ENSMODG00000044053) #18	HOXB6 (ENSMODG00000012334) #19	HOXB5 (ENSMODG00000012338) #20	HOXB4 (ENSMODG00000042083) #21	HOXB3 (ENSMODG00000012344) #22	HOXB2 (ENSMODG00000012347) #23	HOXB1 (ENSMODG00000046816) #24	SKAP1 (ENSMODG00000012360) #25	SNX11 (ENSMODG00000051179) #26	CBX1 (ENSMODG00000012368) #27	NFE2L1 (ENSMODG00000012375) #28	COPZ2 (ENSMODG00000012424) #29	CDK5RAP3 (ENSMODG00000012439) #30	PRR15L (ENSMODG00000024090) #31	PNPO (ENSMODG00000012446) #32	ENSMODG00000050066	SP2 (ENSMODG00000012452) #33	SP6 (ENSMODG00000012454)	SCRN2 (ENSMODG00000012467)	LRRC46 (ENSMODG00000012473)
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00390000006679.b.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT01100000263525.b.a	ENSGT00390000006679.b.b	ENSGT00940000160427	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT01100000263525.b.a	ENSGT00390000006679.b.b	ENSGT00940000160427	ENSGT00390000007843 #8	ENSGT00940000159091.e #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Common wonbat	MODERN SPECIES	1037	PHOSPHO1 (ENSVURG00010007795)	ABI3 (ENSVURG00010007788)	GNGT2 (ENSVURG00010007781)	B4GALNT2 (ENSVURG00010007761)	IGF2BP1 (ENSVURG00010007702)	SNF8 (ENSVURG00010007691) #8	ENSVURG00010007663 #9	CALCOCO2 (ENSVURG00010007642) #11	HOXB13 (ENSVURG00010007629) #13	HOXB9 (ENSVURG00010007619) #16	HOXB8 (ENSVURG00010007609) #17	HOXB7 (ENSVURG00010007606) #18	HOXB6 (ENSVURG00010007602) #19	HOXB5 (ENSVURG00010007599) #20	HOXB4 (ENSVURG00010007589) #21	HOXB3 (ENSVURG00010007587) #22	HOXB2 (ENSVURG00010007579) #23	HOXB1 (ENSVURG00010007572) #24	SKAP1 (ENSVURG00010007559) #25	SNX11 (ENSVURG00010007541) #26	CBX1 (ENSVURG00010007537) #27	NFE2L1 (ENSVURG00010007465) #28	COPZ2 (ENSVURG00010007430) #29	CDK5RAP3 (ENSVURG00010007403) #30	PRR15L (ENSVURG00010007394) #31	PNPO (ENSVURG00010007376) #32	ENSVURG00010007365	SP2 (ENSVURG00010007347) #33	SP6 (ENSVURG00010007336)	SCRN2 (ENSVURG00010007326)	LRRC46 (ENSVURG00010007320)
koala	MODERN SPECIES	67	ABI3 (ENSPCIG00000013108)	GNGT2 (ENSPCIG00000013109)	B4GALNT2 (ENSPCIG00000003606)	IGF2BP1 (ENSPCIG00000013111)	SNF8 (ENSPCIG00000013302) #8	ENSPCIG00000013305 #9	ATP5MC1 (ENSPCIG00000013306) #10	CALCOCO2 (ENSPCIG00000010432) #11	TTLL6 (ENSPCIG00000030247) #12	HOXB13 (ENSPCIG00000030249) #13	HOXB9 (ENSPCIG00000030251) #16	HOXB7 (ENSPCIG00000000064) #18	HOXB6 (ENSPCIG00000000076) #19	HOXB5 (ENSPCIG00000031080) #20	HOXB4 (ENSPCIG00000000195) #21	HOXB3 (ENSPCIG00000000217) #22	HOXB2 (ENSPCIG00000000295) #23	HOXB1 (ENSPCIG00000033449) #24	SKAP1 (ENSPCIG00000000339) #25	SNX11 (ENSPCIG00000000612) #26	CBX1 (ENSPCIG00000000630) #27	NFE2L1 (ENSPCIG00000000720) #28	COPZ2 (ENSPCIG00000000757) #29	CDK5RAP3 (ENSPCIG00000000798) #30	PRR15L (ENSPCIG00000000814) #31	PNPO (ENSPCIG00000000828) #32	ENSPCIG00000000834	SP2 (ENSPCIG00000000843) #33	SP6 (ENSPCIG00000000873)	SCRN2 (ENSPCIG00000000883)	LRRC46 (ENSPCIG00000000900)
Tasmanian devil	MODERN SPECIES	3	ABI3 (ENSSHAG00000023845)	ENSSHAG00000014937	ENSSHAG00000014639	IGF2BP1 (ENSSHAG00000014259)	ENSSHAG00000014119 #7	SNF8 (ENSSHAG00000013985) #8	UBE2Z (ENSSHAG00000020994) #9	ATP5MC1 (ENSSHAG00000013859) #10	CALCOCO2 (ENSSHAG00000022264) #11	TTLL6 (ENSSHAG00000013396) #12	HOXB13 (ENSSHAG00000013189) #13	HOXB9 (ENSSHAG00000012684) #16	HOXB8 (ENSSHAG00000023021) #17	HOXB7 (ENSSHAG00000022783) #18	HOXB5 (ENSSHAG00000024100) #20	HOXB3 (ENSSHAG00000031207) #22	HOXB2 (ENSSHAG00000012232) #23	HOXB1 (ENSSHAG00000012150) #24	ENSSHAG00000029678	SNX11 (ENSSHAG00000029423) #26	CBX1 (ENSSHAG00000023789) #27	NFE2L1 (ENSSHAG00000026195) #28	COPZ2 (ENSSHAG00000023675) #29	CDK5RAP3 (ENSSHAG00000006548) #30	PRR15L (ENSSHAG00000025985) #31	PNPO (ENSSHAG00000023730) #32	ENSSHAG00000005930	SP2 (ENSSHAG00000005633) #33	SP6 (ENSSHAG00000030597)	SCRN2 (ENSSHAG00000003868)	LRRC46 (ENSSHAG00000003740)
Platypus	MODERN SPECIES	2	GNGT2 (ENSOANG00000037597)	B4GALNT2 (ENSOANG00000042946)	IGF2BP1 (ENSOANG00000014859)	SNF8 (ENSOANG00000050758) #8	UBE2Z (ENSOANG00000042370) #9	ATP5MC1 (ENSOANG00000049234) #10	ENSOANG00000021387 #11	ENSOANG00000007312 #12	HOXB13 (ENSOANG00000007689) #13	HOXB9 (ENSOANG00000005338) #16	HOXB8 (ENSOANG00000047281) #17	HOXB7 (ENSOANG00000051269) #18	HOXB6 (ENSOANG00000050952) #19	HOXB5 (ENSOANG00000051056) #20	HOXB4 (ENSOANG00000042426) #21	HOXB3 (ENSOANG00000039840) #22	HOXB2 (ENSOANG00000041050) #23	HOXB1 (ENSOANG00000010307) #24	ENSOANG00000044458	SKAP1 (ENSOANG00000010840) #25	ENSOANG00000039817 #26	CBX1 (ENSOANG00000049057) #27	NFE2L1 (ENSOANG00000043783) #28	ENSOANG00000048116 #30	PRR15L (ENSOANG00000013452) #31	PNPO (ENSOANG00000013451) #32	ENSOANG00000049621	SP2 (ENSOANG00000050083) #33	SCRN2 (ENSOANG00000001540)	ENSOANG00000001541	MRPL10 (ENSOANG00000006797)
Sauria	ANCESTRAL SPECIES	26	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.c.a ##27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000165938	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.c.a ##27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000165938	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.c.a ##27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00960000192469
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000165938	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230.g #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.c.a ##27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.b #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00960000192469
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000165938	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230.g #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.c.a ##27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.b #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00960000192469
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT01100000263641.a	ENSGT00960000191601	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529.g #17	ENSGT00940000161230.g #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.c.a ##27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590.b #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00960000192469	ENSGT00390000000603
Mainland tiger snake	MODERN SPECIES	29	SNF8 (ENSNSUG00000007427) #8	UBE2Z (ENSNSUG00000007428) #9	ATP5MC1 (ENSNSUG00000007429) #10	ENSNSUG00000007431 #11	ENSNSUG00000007433	ENSNSUG00000007436	ENSNSUG00000007438	ENSNSUG00000007439 #12	HOXB13 (ENSNSUG00000007440) #13	HOXB9 (ENSNSUG00000007441) #16	ENSNSUG00000007442 #17	ENSNSUG00000007443 #18	HOXB6 (ENSNSUG00000007444) #19	HOXB5 (ENSNSUG00000007445) #20	HOXB4 (ENSNSUG00000007447) #21	HOXB3 (ENSNSUG00000007448) #22	HOXB2 (ENSNSUG00000007449) #23	HOXB1 (ENSNSUG00000007450) #24	SKAP1 (ENSNSUG00000007452) #25	SNX11 (ENSNSUG00000007454) #26	ENSNSUG00000007455 ##27	NFE2L1 (ENSNSUG00000007456) #28	COPZ2 (ENSNSUG00000007459) #29	CDK5RAP3 (ENSNSUG00000007503) #30	PRR15L (ENSNSUG00000007504) #31	PNPO (ENSNSUG00000007506) #32	ENSNSUG00000007509 #33	SP6 (ENSNSUG00000007513)	SCRN2 (ENSNSUG00000007517)	ENSNSUG00000007519	MRPL10 (ENSNSUG00000007520)
Eastern brown snake	MODERN SPECIES	49	ENSPTXG00000013875	IGF2BP1 (ENSPTXG00000013878)	SNF8 (ENSPTXG00000013881) #8	UBE2Z (ENSPTXG00000013882) #9	ATP5MC1 (ENSPTXG00000013884) #10	ENSPTXG00000013886 #11	ENSPTXG00000013887	ENSPTXG00000013890	HOXB13 (ENSPTXG00000013892) #13	HOXB9 (ENSPTXG00000013894) #16	ENSPTXG00000013896 #17	ENSPTXG00000013897 #18	HOXB6 (ENSPTXG00000013898) #19	HOXB5 (ENSPTXG00000013900) #20	HOXB4 (ENSPTXG00000013902) #21	HOXB3 (ENSPTXG00000013904) #22	HOXB2 (ENSPTXG00000013905) #23	HOXB1 (ENSPTXG00000013906) #24	ENSPTXG00000013907	SKAP1 (ENSPTXG00000013908) #25	SNX11 (ENSPTXG00000013909) #26	ENSPTXG00000013911 ##27	NFE2L1 (ENSPTXG00000013912) #28	COPZ2 (ENSPTXG00000013913) #29	CDK5RAP3 (ENSPTXG00000013914) #30	PRR15L (ENSPTXG00000013915) #31	PNPO (ENSPTXG00000013916) #32	ENSPTXG00000013917 #33	SP6 (ENSPTXG00000013918)	SCRN2 (ENSPTXG00000013919)	ENSPTXG00000013920
Blue-lipped sea krait	MODERN SPECIES	9907										HOXB9 (ENSLLTG00000013388) #16	HOXB8 (ENSLLTG00000013376) #17	HOXB7 (ENSLLTG00000013372) #18	HOXB6 (ENSLLTG00000013367) #19	HOXB5 (ENSLLTG00000013362) #20	HOXB4 (ENSLLTG00000013356) #21	HOXB3 (ENSLLTG00000013351) #22	HOXB2 (ENSLLTG00000013346) #23	HOXB1 (ENSLLTG00000013341) #24
Indian cobra	MODERN SPECIES	337	B4GALNT2 (ENSNNAG00000009682)	IGF2BP1 (ENSNNAG00000009591)	SNF8 (ENSNNAG00000009568) #8	UBE2Z (ENSNNAG00000009539) #9	ATP5MC1 (ENSNNAG00000009523) #10	ENSNNAG00000009498 #11	ENSNNAG00000009486	ENSNNAG00000009471	HOXB13 (ENSNNAG00000009423) #13	HOXB9 (ENSNNAG00000009384) #16	HOXB8 (ENSNNAG00000009361) #17	HOXB7 (ENSNNAG00000009344) #18	HOXB6 (ENSNNAG00000009328) #19	HOXB5 (ENSNNAG00000009308) #20	HOXB4 (ENSNNAG00000009277) #21	HOXB3 (ENSNNAG00000009256) #22	HOXB2 (ENSNNAG00000009232) #23	HOXB1 (ENSNNAG00000009145) #24	SNX11 (ENSNNAG00000009074) #26	ENSNNAG00000009045 ##27	NFE2L1 (ENSNNAG00000009022) #28	COPZ2 (ENSNNAG00000008924) #29	CDK5RAP3 (ENSNNAG00000008878) #30	PRR15L (ENSNNAG00000008859) #31	PNPO (ENSNNAG00000008837) #32	ENSNNAG00000008826 #33	SP6 (ENSNNAG00000008820)	SCRN2 (ENSNNAG00000008774)	ENSNNAG00000008753	MRPL10 (ENSNNAG00000008730)	OSBPL7 (ENSNNAG00000008187)
Lizard	MODERN SPECIES	5	IGF2BP1 (ENSACAG00000006199)	ENSACAG00000006291 #7	SNF8 (ENSACAG00000036858) #8	UBE2Z (ENSACAG00000006311) #9	ENSACAG00000042101	ATP5MC1 (ENSACAG00000035288) #10	ENSACAG00000006352 #11	ENSACAG00000035828	TTLL6 (ENSACAG00000006363) #12	HOXB9 (ENSACAG00000040887) #16	HOXB8 (ENSACAG00000036553) #17	HOXB7 (ENSACAG00000041279) #18	HOXB6 (ENSACAG00000034900) #19	HOXB5 (ENSACAG00000042998) #20	HOXB4 (ENSACAG00000006499) #21	HOXB3 (ENSACAG00000006508) #22	HOXB2 (ENSACAG00000006521) #23	HOXB1 (ENSACAG00000035547) #24	ENSACAG00000041448	ENSACAG00000034966	SKAP1 (ENSACAG00000006534) #25	SNX11 (ENSACAG00000006556) #26	ENSACAG00000006594 ##27	NFE2L1 (ENSACAG00000006615) #28	COPZ2 (ENSACAG00000006651) #29	CDK5RAP3 (ENSACAG00000006686) #30	PRR15L (ENSACAG00000006762) #31	PNPO (ENSACAG00000006764) #32	SP2 (ENSACAG00000006793) #33	SP6 (ENSACAG00000006831)	SCRN2 (ENSACAG00000006837)
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000165938.a	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.c.a ##27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000013106 #7	SNF8 (ENSPMRG00000013111) #8	UBE2Z (ENSPMRG00000013116) #9	ENSPMRG00000013122 #10	ENSPMRG00000013127 #11	ENSPMRG00000013134	ENSPMRG00000013136	ENSPMRG00000013141	TTLL6 (ENSPMRG00000013146) #12	HOXB9 (ENSPMRG00000013158) #16	HOXB8 (ENSPMRG00000013160) #17	HOXB7 (ENSPMRG00000013164) #18	HOXB6 (ENSPMRG00000013165) #19	HOXB5 (ENSPMRG00000013170) #20	HOXB4 (ENSPMRG00000013173) #21	HOXB3 (ENSPMRG00000013178) #22	HOXB2 (ENSPMRG00000013183) #23	HOXB1 (ENSPMRG00000013189) #24	ENSPMRG00000013192	CBX1 (ENSPMRG00000013202) ##27	SNX11 (ENSPMRG00000013221) #26	NFE2L1 (ENSPMRG00000013246) #28	ENSPMRG00000013258	COPZ2 (ENSPMRG00000013275) #29	CDK5RAP3 (ENSPMRG00000013294) #30	PNPO (ENSPMRG00000013310) #32	ENSPMRG00000013316	SP2 (ENSPMRG00000013320) #33	SP6 (ENSPMRG00000013329)	SCRN2 (ENSPMRG00000013336)	LRRC46 (ENSPMRG00000013345)
Argentine black and white tegu	MODERN SPECIES	32	IGF2BP1 (ENSSMRG00000021826)	SNF8 (ENSSMRG00000021827) #8	UBE2Z (ENSSMRG00000021828) #9	ENSSMRG00000021829	CALCOCO2 (ENSSMRG00000021830) #11	ENSSMRG00000021831	ENSSMRG00000021832	ENSSMRG00000021833 #12	HOXB13 (ENSSMRG00000021834) #13	HOXB9 (ENSSMRG00000021835) #16	HOXB8 (ENSSMRG00000021836) #17	HOXB7 (ENSSMRG00000021837) #18	HOXB6 (ENSSMRG00000021838) #19	HOXB5 (ENSSMRG00000021839) #20	HOXB4 (ENSSMRG00000021841) #21	HOXB3 (ENSSMRG00000021842) #22	HOXB2 (ENSSMRG00000021844) #23	HOXB1 (ENSSMRG00000021845) #24	SKAP1 (ENSSMRG00000021847) #25	SNX11 (ENSSMRG00000021848) #26	CBX1 (ENSSMRG00000021849) ##27	NFE2L1 (ENSSMRG00000021850) #28	COPZ2 (ENSSMRG00000021851) #29	CDK5RAP3 (ENSSMRG00000021852) #30	PRR15L (ENSSMRG00000021853) #31	PNPO (ENSSMRG00000021854) #32	ENSSMRG00000021855	SP2 (ENSSMRG00000021856) #33	SP6 (ENSSMRG00000021857)	SCRN2 (ENSSMRG00000021858)	LRRC46 (ENSSMRG00000000025)
tuatara	MODERN SPECIES	1118	GNGT2 (ENSSPUG00000006845)	ENSSPUG00000006744	ENSSPUG00000006590	IGF2BP1 (ENSSPUG00000006526)	ENSSPUG00000006512 #8	ENSSPUG00000006503	UBE2Z (ENSSPUG00000006500) #9	ENSSPUG00000006493	ENSSPUG00000006484 #11	TTLL6 (ENSSPUG00000006396) #12	HOXB9 (ENSSPUG00000006346) #16	HOXB8 (ENSSPUG00000006333) #17	HOXB7 (ENSSPUG00000006323) #18	HOXB6 (ENSSPUG00000006308) #19	HOXB4 (ENSSPUG00000006280) #21	HOXB3 (ENSSPUG00000006266) #22	FLRT1 (ENSSPUG00000006188)	MACROD1 (ENSSPUG00000006177)	STIP1 (ENSSPUG00000006129)	FERMT3 (ENSSPUG00000005869)	NUDT22 (ENSSPUG00000005809)	DNAJC4 (ENSSPUG00000005787)	FKBP2 (ENSSPUG00000005764)	PPP1R14B (ENSSPUG00000005736)	PLCB3 (ENSSPUG00000005615)	ENSSPUG00000005596	ENSSPUG00000005590	ENSSPUG00000005575	GPR137 (ENSSPUG00000005567)	KCNK4 (ENSSPUG00000005547)	ENSSPUG00000005532
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00390000006679.b	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Emydidae	ANCESTRAL SPECIES	26	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
painted turtle	MODERN SPECIES	2394	ZNF652 (ENSCPBG00000027302)	PHOSPHO1 (ENSCPBG00000027305)	ABI3 (ENSCPBG00000027308)	GNGT2 (ENSCPBG00000027311)	IGF2BP1 (ENSCPBG00000027315)	GIP (ENSCPBG00000027322) #7	SNF8 (ENSCPBG00000027324) #8	UBE2Z (ENSCPBG00000027326) #9	ATP5MC1 (ENSCPBG00000027327) #10	CALCOCO2 (ENSCPBG00000027328) #11	TTLL6 (ENSCPBG00000027332) #12	HOXB13 (ENSCPBG00000027335) #13	HOXB9 (ENSCPBG00000027339) #16	HOXB8 (ENSCPBG00000027340) #17	HOXB7 (ENSCPBG00000027341) #18	HOXB3 (ENSCPBG00000027344) #22	HOXB6 (ENSCPBG00000027348) #19	HOXB5 (ENSCPBG00000027349) #20	ENSCPBG00000027351	HOXB2 (ENSCPBG00000027352) #23	HOXB1 (ENSCPBG00000027354) #24	SKAP1 (ENSCPBG00000027357) #25	SNX11 (ENSCPBG00000027362) #26	CBX1 (ENSCPBG00000027366) #27	NFE2L1 (ENSCPBG00000027369) #28	COPZ2 (ENSCPBG00000027373) #29	CDK5RAP3 (ENSCPBG00000027376) #30	PRR15L (ENSCPBG00000027380) #31	PNPO (ENSCPBG00000027382) #32	ENSCPBG00000027388	SP2 (ENSCPBG00000027391) #33
Three-toed box turtle	MODERN SPECIES	91	GNGT2 (ENSTMTG00000007963)	IGF2BP1 (ENSTMTG00000007859)	GIP (ENSTMTG00000007840) #7	SNF8 (ENSTMTG00000007821) #8	UBE2Z (ENSTMTG00000007812) #9	ATP5MC1 (ENSTMTG00000007797) #10	CALCOCO2 (ENSTMTG00000007745) #11	ENSTMTG00000007723 #12	HOXB13 (ENSTMTG00000007711) #13	HOXB9 (ENSTMTG00000007702) #16	HOXB8 (ENSTMTG00000007693) #17	HOXB7 (ENSTMTG00000007684) #18	HOXB6 (ENSTMTG00000007672) #19	HOXB5 (ENSTMTG00000007666) #20	HOXB4 (ENSTMTG00000007660) #21	HOXB3 (ENSTMTG00000007653) #22	HOXB2 (ENSTMTG00000007640) #23	HOXB1 (ENSTMTG00000007622) #24	SKAP1 (ENSTMTG00000007393) #25	SNX11 (ENSTMTG00000007347) #26	CBX1 (ENSTMTG00000007333) #27	NFE2L1 (ENSTMTG00000007320) #28	COPZ2 (ENSTMTG00000007271) #29	CDK5RAP3 (ENSTMTG00000007229) #30	PRR15L (ENSTMTG00000007217) #31	PNPO (ENSTMTG00000007206) #32	ENSTMTG00000007188	SP2 (ENSTMTG00000007171) #33	ENSTMTG00000007161	SCRN2 (ENSTMTG00000007144)	ENSTMTG00000007129
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00390000006679.b.j	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Goode s thornscrub tortoise	MODERN SPECIES	15	ENSGEVG00005018261	IGF2BP1 (ENSGEVG00005018150)	ENSGEVG00005018109 #7	SNF8 (ENSGEVG00005018088) #8	UBE2Z (ENSGEVG00005018038) #9	ATP5MC1 (ENSGEVG00005018012) #10	CALCOCO2 (ENSGEVG00005017985) #11	ENSGEVG00005017952 #12	HOXB13 (ENSGEVG00005017930) #13	HOXB9 (ENSGEVG00005017896) #16	HOXB8 (ENSGEVG00005017871) #17	HOXB7 (ENSGEVG00005017847) #18	HOXB6 (ENSGEVG00005017822) #19	HOXB5 (ENSGEVG00005017800) #20	HOXB4 (ENSGEVG00005017783) #21	HOXB3 (ENSGEVG00005017763) #22	HOXB2 (ENSGEVG00005017753) #23	HOXB1 (ENSGEVG00005017735) #24	SKAP1 (ENSGEVG00005017712) #25	SNX11 (ENSGEVG00005017693) #26	CBX1 (ENSGEVG00005017682) #27	NFE2L1 (ENSGEVG00005017658) #28	COPZ2 (ENSGEVG00005017626) #29	CDK5RAP3 (ENSGEVG00005017600) #30	PRR15L (ENSGEVG00005017586) #31	PNPO (ENSGEVG00005017569) #32	ENSGEVG00005017553	SP2 (ENSGEVG00005017526) #33	SCRN2 (ENSGEVG00005017480)	LRRC46 (ENSGEVG00005017463)	MRPL10 (ENSGEVG00005017446)
Abingdon island giant tortoise	MODERN SPECIES	1609	ENSCABG00000002782	IGF2BP1 (ENSCABG00000002771)	GIP (ENSCABG00000002769) #7	SNF8 (ENSCABG00000002767) #8	UBE2Z (ENSCABG00000002765) #9	ATP5MC1 (ENSCABG00000002763) #10	CALCOCO2 (ENSCABG00000002761) #11	TTLL6 (ENSCABG00000002759) #12	HOXB13 (ENSCABG00000002758) #13	HOXB9 (ENSCABG00000002754) #16	HOXB8 (ENSCABG00000002750) #17	HOXB7 (ENSCABG00000002742) #18	HOXB6 (ENSCABG00000002738) #19	HOXB5 (ENSCABG00000002737) #20	HOXB4 (ENSCABG00000002736) #21	HOXB3 (ENSCABG00000002733) #22	HOXB2 (ENSCABG00000002731) #23	HOXB1 (ENSCABG00000002728) #24	SKAP1 (ENSCABG00000002721) #25	SNX11 (ENSCABG00000002717) #26	CBX1 (ENSCABG00000002713) #27	NFE2L1 (ENSCABG00000002708) #28	COPZ2 (ENSCABG00000002681) #29	CDK5RAP3 (ENSCABG00000002680) #30	PRR15L (ENSCABG00000002679) #31	PNPO (ENSCABG00000002678) #32	ENSCABG00000002677	SP2 (ENSCABG00000002675) #33	SP6 (ENSCABG00000002674)	SCRN2 (ENSCABG00000002671)	ENSCABG00000002668
Chinese turtle	MODERN SPECIES	873	GNGT2 (ENSPSIG00000004780)	B4GALNT2 (ENSPSIG00000004798)	IGF2BP1 (ENSPSIG00000005175)	ENSPSIG00000005451 #7	SNF8 (ENSPSIG00000005459) #8	ENSPSIG00000005879	CALCOCO2 (ENSPSIG00000006041) #11	ENSPSIG00000006373 #13	TTLL6 (ENSPSIG00000006379) #12	HOXB9 (ENSPSIG00000007113) #16	HOXB8 (ENSPSIG00000007118) #17	HOXB7 (ENSPSIG00000007133) #18	HOXB6 (ENSPSIG00000007278) #19	HOXB5 (ENSPSIG00000007287) #20	HOXB4 (ENSPSIG00000007302) #21	HOXB3 (ENSPSIG00000007309) #22	HOXB1 (ENSPSIG00000007311) #24	ENSPSIG00000001784	SKAP1 (ENSPSIG00000007314) #25	SNX11 (ENSPSIG00000007556) #26	CBX1 (ENSPSIG00000007751) #27	ENSPSIG00000007945 #28	COPZ2 (ENSPSIG00000008186) #29
Archosauria	ANCESTRAL SPECIES	20	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Australian saltwater crocodile	MODERN SPECIES	60	IGF2BP1 (ENSCPRG00005007311)	GIP (ENSCPRG00005007298) #7	SNF8 (ENSCPRG00005007296) #8	UBE2Z (ENSCPRG00005007294) #9	ATP5MC1 (ENSCPRG00005007292) #10	ENSCPRG00005007273 #11	TTLL6 (ENSCPRG00005007263) #12	ENSCPRG00005007261	HOXB13 (ENSCPRG00005007259) #13	HOXB9 (ENSCPRG00005007240) #16	HOXB8 (ENSCPRG00005007236) #17	HOXB7 (ENSCPRG00005007234) #18	HOXB6 (ENSCPRG00005007226) #19	HOXB5 (ENSCPRG00005007222) #20	HOXB4 (ENSCPRG00005007218) #21	HOXB3 (ENSCPRG00005007217) #22	HOXB2 (ENSCPRG00005007216) #23	HOXB1 (ENSCPRG00005007211) #24	SKAP1 (ENSCPRG00005007201) #25	SNX11 (ENSCPRG00005007185) #26	CBX1 (ENSCPRG00005007181) #27	NFE2L1 (ENSCPRG00005007178) #28	COPZ2 (ENSCPRG00005007172) #29	CDK5RAP3 (ENSCPRG00005007163) #30	PRR15L (ENSCPRG00005007160) #31	PNPO (ENSCPRG00005007155) #32	ENSCPRG00005007151	SP2 (ENSCPRG00005007150) #33	SP6 (ENSCPRG00005007147)	SCRN2 (ENSCPRG00005007138)	LRRC46 (ENSCPRG00005007132)
Aves	ANCESTRAL SPECIES	26	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
African ostrich	MODERN SPECIES	625			PHB1 (ENSSCUG00000008422)	ZNF652 (ENSSCUG00000008426)	GNGT2 (ENSSCUG00000008427)	IGF2BP1 (ENSSCUG00000008429)	GIP (ENSSCUG00000008435) #7	SNF8 (ENSSCUG00000008438) #8	UBE2Z (ENSSCUG00000008440) #9	CALCOCO2 (ENSSCUG00000008444) #11	HOXB9 (ENSSCUG00000008450) #16	HOXB8 (ENSSCUG00000008451) #17	HOXB7 (ENSSCUG00000008454) #18	HOXB5 (ENSSCUG00000008457) #20	HOXB4 (ENSSCUG00000008461) #21	HOXB3 (ENSSCUG00000008463) #22	HOXB2 (ENSSCUG00000008465) #23	HOXB1 (ENSSCUG00000008466) #24	SKAP1 (ENSSCUG00000008467) #25	SNX11 (ENSSCUG00000008468) #26	CBX1 (ENSSCUG00000008469) #27	NFE2L1 (ENSSCUG00000008470) #28	ENSSCUG00000008471 #30	ENSSCUG00000008472 #30	PRR15L (ENSSCUG00000008473) #31	PNPO (ENSSCUG00000008474) #32	SP2 (ENSSCUG00000008476) #33
Neognathae	ANCESTRAL SPECIES	23	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Anatidae	ANCESTRAL SPECIES	70	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603
Pink-footed goose	MODERN SPECIES	305	ABI3 (ENSABRG00000021488)	GNGT2 (ENSABRG00000021492)	IGF2BP1 (ENSABRG00000000212)	GIP (ENSABRG00000000246) #7	SNF8 (ENSABRG00000000286) #8	UBE2Z (ENSABRG00000000335) #9	ATP5MC1 (ENSABRG00000000359) #10	CALCOCO2 (ENSABRG00000000383) #11	HOXB13 (ENSABRG00000000421) #13	HOXB9 (ENSABRG00000000456) #16	HOXB8 (ENSABRG00000000461) #17	HOXB7 (ENSABRG00000000473) #18	HOXB6 (ENSABRG00000000480) #19	HOXB5 (ENSABRG00000000485) #20	HOXB4 (ENSABRG00000000495) #21	HOXB3 (ENSABRG00000000506) #22	HOXB2 (ENSABRG00000000517) #23	HOXB1 (ENSABRG00000000522) #24	SKAP1 (ENSABRG00000000558) #25	SNX11 (ENSABRG00000000576) #26	CBX1 (ENSABRG00000000584) #27	NFE2L1 (ENSABRG00000000594) #28	ENSABRG00000000606 #29	CDK5RAP3 (ENSABRG00000000636) #30	PNPO (ENSABRG00000000676) #32	SP2 (ENSABRG00000001034) #33	SP6 (ENSABRG00000001100)	SCRN2 (ENSABRG00000001107)	LRRC46 (ENSABRG00000001138)	MRPL10 (ENSABRG00000001154)	ENSABRG00000001168
Duck	MODERN SPECIES	19	ENSAPLG00000021605	ENSAPLG00000022532	GNGT2 (ENSAPLG00000012604)	IGF2BP1 (ENSAPLG00000012620)	GIP (ENSAPLG00000013204) #7	SNF8 (ENSAPLG00000031118) #8	ENSAPLG00000013301	ENSAPLG00000013396 #11	HOXB13 (ENSAPLG00000023394) #13	HOXB9 (ENSAPLG00000013604) #16	HOXB8 (ENSAPLG00000013614) #17	HOXB7 (ENSAPLG00000013643) #18	HOXB6 (ENSAPLG00000013649) #19	HOXB5 (ENSAPLG00000013657) #20	HOXB4 (ENSAPLG00000013669) #21	HOXB3 (ENSAPLG00000018688) #22	HOXB2 (ENSAPLG00000022580) #23	HOXB1 (ENSAPLG00000018179) #24	SKAP1 (ENSAPLG00000007983) #25
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439.i
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000154298.a.b #10	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439.i
Chicken	MODERN SPECIES	19	GNGT2 (ENSGALG00010024500)	IGF2BP1 (ENSGALG00010024697)	GIP (ENSGALG00010026239) #7	SNF8 (ENSGALG00010026298) #8	UBE2Z (ENSGALG00010026856) #9	ATP5MC1 (ENSGALG00010026305) #10	ENSGALG00010026334 #11	HOXB13 (ENSGALG00010026052) #13	HOXB9 (ENSGALG00010026782) #16	ENSGALG00010023374 #17	HOXB8 (ENSGALG00010021446) #17	HOXB7 (ENSGALG00010023381) #18	HOXB6 (ENSGALG00010023383) #19	HOXB5 (ENSGALG00010023394) #20	HOXB4 (ENSGALG00010023415) #21	HOXB3 (ENSGALG00010023428) #22	HOXB2 (ENSGALG00010023438) #23	HOXB1 (ENSGALG00010023454) #24	SKAP1 (ENSGALG00010021479) #25	SNX11 (ENSGALG00010021554) #26	CBX1 (ENSGALG00010021565) #27	NFE2L1 (ENSGALG00010021583) #28	CDK5RAP3 (ENSGALG00010023706) #30	PRR15L (ENSGALG00010023722) #31	PNPO (ENSGALG00010023726) #32	SP2 (ENSGALG00010023730) #33	SP6 (ENSGALG00010023742)	SCRN2 (ENSGALG00010023770)	LRRC46 (ENSGALG00010023784)	MRPL10 (ENSGALG00010023807)	OSBPL7 (ENSGALG00010023841)
Turkey	MODERN SPECIES	21	GNGT2 (ENSMGAG00000022172)	IGF2BP1 (ENSMGAG00000002497)	ENSMGAG00000007094 #7	SNF8 (ENSMGAG00000007078) #8	UBE2Z (ENSMGAG00000007071) #9	ENSMGAG00000007047 #11	ENSMGAG00000002528 #17	ENSMGAG00000017883 #20	ENSMGAG00000018145 ##28	ENSMGAG00000001269 #28	ENSMGAG00000001238 #27	ENSMGAG00000005549 #26	ENSMGAG00000002604 #25	ENSMGAG00000002567 #24	ENSMGAG00000019576 #23	ENSMGAG00000002541 #22	ENSMGAG00000007152	ENSMGAG00000007146	ENSMGAG00000002914	ENSMGAG00000017567	ENSMGAG00000017244	ENSMGAG00000002870	ENSMGAG00000002864	ENSMGAG00000019329	ENSMGAG00000022574	ENSMGAG00000015993	ENSMGAG00000002822	ENSMGAG00000005490	ENSMGAG00000005512	ENSMGAG00000022275	ENSMGAG00000018167
Japanese quail	MODERN SPECIES	19	ABI3 (ENSCJPG00005019354)	GNGT2 (ENSCJPG00005019355)	IGF2BP1 (ENSCJPG00005019356)	GIP (ENSCJPG00005019357) #7	SNF8 (ENSCJPG00005019359) #8	UBE2Z (ENSCJPG00005019360) #9	ENSCJPG00005019361	ENSCJPG00005019362 #11	HOXB13 (ENSCJPG00005019363) #13	HOXB9 (ENSCJPG00005019365) #16	HOXB8 (ENSCJPG00005019366) #17	HOXB7 (ENSCJPG00005019367) #18	HOXB6 (ENSCJPG00005019368) #19	HOXB5 (ENSCJPG00005019369) #20	HOXB4 (ENSCJPG00005019371) #21	HOXB3 (ENSCJPG00005019372) #22	HOXB2 (ENSCJPG00005019373) #23	HOXB1 (ENSCJPG00005019374) #24	SKAP1 (ENSCJPG00005019375) #25	SNX11 (ENSCJPG00005019376) #26	CBX1 (ENSCJPG00005019377) #27	NFE2L1 (ENSCJPG00005019378) #28	CDK5RAP3 (ENSCJPG00005019379) #30	PRR15L (ENSCJPG00005019386) #31	SP2 (ENSCJPG00005019387) #33	SP6 (ENSCJPG00005019388)	SCRN2 (ENSCJPG00005019389)	LRRC46 (ENSCJPG00005019390)	MRPL10 (ENSCJPG00005019391)	TBX21 (ENSCJPG00005019401)	KPNB1 (ENSCJPG00005000892)
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Passeriformes	ANCESTRAL SPECIES	29										ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000158988.a.b	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000000713 #30	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315	ENSGT00940000172406	ENSGT00940000157439	ENSGT00940000160397
Great tit	MODERN SPECIES	283															ENSPMJG00000001410	HOXB3 (ENSPMJG00000001415) #22	HOXB2 (ENSPMJG00000001429) #23	HOXB1 (ENSPMJG00000001436) #24	ENSPMJG00000001437	SKAP1 (ENSPMJG00000001443) #25
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00940000161380	ENSGT01100000263525.b.a	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843.cb #8	ENSGT00940000159091 #9	ENSGT00940000159720	ENSGT00950000183025.a #11	ENSGT00940000159029 #13	ENSGT00940000161386 #16	ENSGT00940000161529 #17	ENSGT00940000161230 #18	ENSGT00940000161108 #19	ENSGT00940000158354 #20	ENSGT00940000162072 #21	ENSGT00940000159774 #22	ENSGT00940000155029.c.b #23	ENSGT00940000159503 #24	ENSGT00390000017856.b #25	ENSGT00940000160113 #26	ENSGT00940000154152.d #27	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00640000092844	ENSGT00940000159590 #33	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00940000161315
Golden eagle	MODERN SPECIES	24	ABI3 (ENSACCG00020006027)	GNGT2 (ENSACCG00020006019)	IGF2BP1 (ENSACCG00020006001)	GIP (ENSACCG00020005975) #7	SNF8 (ENSACCG00020005957) #8	UBE2Z (ENSACCG00020005940) #9	ENSACCG00020005924	CALCOCO2 (ENSACCG00020005903) #11	HOXB13 (ENSACCG00020005876) #13	HOXB9 (ENSACCG00020005856) #16	HOXB8 (ENSACCG00020005840) #17	HOXB7 (ENSACCG00020005829) #18	HOXB6 (ENSACCG00020005822) #19	HOXB5 (ENSACCG00020005810) #20	HOXB4 (ENSACCG00020005789) #21	HOXB3 (ENSACCG00020005780) #22	HOXB2 (ENSACCG00020005767) #23	HOXB1 (ENSACCG00020005760) #24	ENSACCG00020005744	SKAP1 (ENSACCG00020005684) #25	SNX11 (ENSACCG00020005654) #26	CBX1 (ENSACCG00020005635) #27	NFE2L1 (ENSACCG00020005624) #28	ENSACCG00020005600	CDK5RAP3 (ENSACCG00020005558) #30	PRR15L (ENSACCG00020005531) #31	PNPO (ENSACCG00020005520) #32	ENSACCG00020005504	SP2 (ENSACCG00020005484) #33	SCRN2 (ENSACCG00020005452)	LRRC46 (ENSACCG00020005432)
Kakapo	MODERN SPECIES	12	ABI3 (ENSSHBG00005014450)	GNGT2 (ENSSHBG00005014459)	IGF2BP1 (ENSSHBG00005014472)	GIP (ENSSHBG00005014482) #7	SNF8 (ENSSHBG00005014495) #8	UBE2Z (ENSSHBG00005014518) #9	ENSSHBG00005014527	ENSSHBG00005014537 #11	HOXB13 (ENSSHBG00005014551) #13	HOXB9 (ENSSHBG00005014566) #16	HOXB8 (ENSSHBG00005014570) #17	HOXB7 (ENSSHBG00005014576) #18	HOXB5 (ENSSHBG00005014586) #20	HOXB6 (ENSSHBG00005014592) #19	ENSSHBG00005014606	HOXB3 (ENSSHBG00005014612) #22	HOXB2 (ENSSHBG00005014624) #23	HOXB1 (ENSSHBG00005014632) #24	SKAP1 (ENSSHBG00005014653) #25	ENSSHBG00005014697 #26	CBX1 (ENSSHBG00005014707) #27	NFE2L1 (ENSSHBG00005014718) #28	COPZ2 (ENSSHBG00005014730) #29	JUP (ENSSHBG00005014758)	P3H4 (ENSSHBG00005014770)	FKBP10 (ENSSHBG00005014777)	NT5C3B (ENSSHBG00005014785)	KLHL10 (ENSSHBG00005014792)	KLHL11 (ENSSHBG00005014800)	ACLY (ENSSHBG00005014817)	ODAD4 (ENSSHBG00005014857)