Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT01090000260086.A.c.a.b	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000153130.a.b.a.a	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b
Primates	ANCESTRAL SPECIES	2	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01080000258109	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000153130.a.b.a.a	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000162998.a
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01100000264510	ENSGT01070000257199
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000165951	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000153130.a.b.a.a	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546.a #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n.b #25	ENSGT00940000160147.a.m #26	ENSGT00940000153130.a.b.b	ENSGT00940000160147.a.n.a ##23	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C.a ##32	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00960000188395
Mas night monkey	MODERN SPECIES	819	CDH24 (ENSANAG00000023080) #7	PSMB5 (ENSANAG00000029997) #8	C14orf93 (ENSANAG00000015389) #9	AJUBA (ENSANAG00000032654) #10	HAUS4 (ENSANAG00000037413) #11	PRMT5 (ENSANAG00000035246) #12	ENSANAG00000031466 #13	REM2 (ENSANAG00000024097) #14	LRP10 (ENSANAG00000029303) #15	MMP14 (ENSANAG00000021316) #16	MRPL52 (ENSANAG00000037074) #17	SLC7A7 (ENSANAG00000036104) #18	OXA1L (ENSANAG00000034299) #19	ENSANAG00000014624 #20	ABHD4 (ENSANAG00000023988) #21	DAD1 (ENSANAG00000029416) #22	TRAC (ENSANAG00000024027) #23	TRDC (ENSANAG00000013027) #24	TRAV38-2DV8 (ENSANAG00000013358) #25	TRAV38-1 (ENSANAG00000013268) #26	TRAV34 (ENSANAG00000011361) #27	TRAV26-2 (ENSANAG00000011824) #28	TRAV30 (ENSANAG00000013331) #29	ENSANAG00000024325 #30	TRAV8-7 (ENSANAG00000029257) #31	ENSANAG00000011148 #32	TRAV24 (ENSANAG00000013613) #33	ENSANAG00000021962 #34	TRAV21 (ENSANAG00000010177) #35	TRAV20 (ENSANAG00000016117) #36	TRAV18 (ENSANAG00000012778) #37
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546.a #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n.b #25	ENSGT00940000153130.a.b.b	ENSGT00940000160147.a.n.a ##23	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C.a ##32	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000162998.a
Marmoset	MODERN SPECIES	1	C14orf93 (ENSCJAG00000008320) #9	AJUBA (ENSCJAG00000008376) #10	ENSCJAG00000008389 #11	ENSCJAG00000008409 #12	RBM23 (ENSCJAG00000008482) #13	REM2 (ENSCJAG00000037144) #14	LRP10 (ENSCJAG00000008522) #15	MMP14 (ENSCJAG00000008538) #16	MRPL52 (ENSCJAG00000035615) #17	SLC7A7 (ENSCJAG00000008592) #18	ENSCJAG00000082162	ENSCJAG00000008664 #19	ENSCJAG00000085751	ABHD4 (ENSCJAG00000008681) #21	ENSCJAG00000047195	DAD1 (ENSCJAG00000074739) #22	TRAC (ENSCJAG00000008714) #23	ENSCJAG00000045165	ENSCJAG00000041313	ENSCJAG00000046505	ENSCJAG00000039022	ENSCJAG00000046331	ENSCJAG00000046757	ENSCJAG00000045350	ENSCJAG00000039105	ENSCJAG00000038280	ENSCJAG00000042576	ENSCJAG00000045740	ENSCJAG00000047190	TRDC (ENSCJAG00000085557) #24	TRDV2 (ENSCJAG00000042880)
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546.a #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n.b #25	ENSGT00940000160147.a.n.a ##23	ENSGT00940000160183.d.a ##36	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.b.a.b	ENSGT00940000162998.a	ENSGT00900000140957.C.b #32	ENSGT00940000163717 #33	ENSGT00900000140957.A.a.b #34
Bolivian squirrel monkey	MODERN SPECIES	52	PSMB11 (ENSSBOG00000008921)	PSMB5 (ENSSBOG00000030520) #8	C14orf93 (ENSSBOG00000018297) #9	AJUBA (ENSSBOG00000028963) #10	HAUS4 (ENSSBOG00000023415) #11	PRMT5 (ENSSBOG00000036125) #12	ENSSBOG00000023037 #13	REM2 (ENSSBOG00000023345) #14	LRP10 (ENSSBOG00000033889) #15	MMP14 (ENSSBOG00000026846) #16	MRPL52 (ENSSBOG00000022662) #17	SLC7A7 (ENSSBOG00000032553) #18	OXA1L (ENSSBOG00000028461) #19	ENSSBOG00000005105 #20	ABHD4 (ENSSBOG00000034998) #21	DAD1 (ENSSBOG00000020528) #22	ENSSBOG00000033224 #23	TRDC (ENSSBOG00000019484) #24	TRAV41 (ENSSBOG00000010905) ##32	ENSSBOG00000004003 #25	ENSSBOG00000019119 ##23	TRAV34 (ENSSBOG00000018340) #27	TRAV26-2 (ENSSBOG00000018946) #28	ENSSBOG00000009785	TRAV26-1 (ENSSBOG00000018975)	ENSSBOG00000019528	TRAV22 (ENSSBOG00000027440) #34	TRAV21 (ENSSBOG00000008898) #35	TRAV12-3 (ENSSBOG00000007472)	TRAV8-3 (ENSSBOG00000035186) ##31	TRAV12-1 (ENSSBOG00000019726)
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	196	CTSV (ENSCCAG00000030717)	FAM240B (ENSCCAG00000037201)	ENSCCAG00000027284	ENSCCAG00000037426	ENSCCAG00000023018	ENSCCAG00000021897	ENSCCAG00000036180	ENSCCAG00000025019	ENSCCAG00000032829	ENSCCAG00000031010	PRXL2C (ENSCCAG00000021330)	ENSCCAG00000030771	ENSCCAG00000004738	ENSCCAG00000026671	HABP4 (ENSCCAG00000029535)	ENSCCAG00000025778 #22	ZNF367 (ENSCCAG00000011083)	SLC35D2 (ENSCCAG00000019726)	HSD17B3 (ENSCCAG00000032712)	ENSCCAG00000026980	PTCH1 (ENSCCAG00000021603)	ENSCCAG00000029017	ENSCCAG00000034109	FANCC (ENSCCAG00000026638)	AOPEP (ENSCCAG00000029936)	FBP1 (ENSCCAG00000005125)	FBP2 (ENSCCAG00000022182)
Capuchin	MODERN SPECIES	170	CDH24 (ENSCCAG00000029972) #7	ENSCCAG00000032430 #8	C14orf93 (ENSCCAG00000009885) #9	AJUBA (ENSCCAG00000035773) #10	HAUS4 (ENSCCAG00000033831) #11	PRMT5 (ENSCCAG00000034980) #12	ENSCCAG00000025114 #13	REM2 (ENSCCAG00000034864) #14	LRP10 (ENSCCAG00000032914) #15	MMP14 (ENSCCAG00000023613) #16	MRPL52 (ENSCCAG00000035013) #17	SLC7A7 (ENSCCAG00000031142) #18	OXA1L (ENSCCAG00000036442) #19	ABHD4 (ENSCCAG00000029397) #21	ENSCCAG00000035365 #22	ENSCCAG00000035123 #22	TRAC (ENSCCAG00000038072) #23	TRDC (ENSCCAG00000033911) #24	TRAV41 (ENSCCAG00000028015) ##32	TRAV40 (ENSCCAG00000026707)	TRAV39 (ENSCCAG00000020589)	ENSCCAG00000018642 #25	ENSCCAG00000017661 ##23	TRAV36DV7 (ENSCCAG00000013691) ##36	TRAV34 (ENSCCAG00000013656) #27	TRAV26-2 (ENSCCAG00000018936) #28	ENSCCAG00000016540	TRAV26-1 (ENSCCAG00000035723)	ENSCCAG00000010783 #32	TRAV24 (ENSCCAG00000020236) #33	TRAV22 (ENSCCAG00000028395) #34
Capuchin	MODERN SPECIES	170	TRAV24 (ENSCCAG00000020236) #33	ENSCCAG00000010783 #32	TRAV26-1 (ENSCCAG00000035723)	ENSCCAG00000016540	TRAV26-2 (ENSCCAG00000018936) #28	TRAV34 (ENSCCAG00000013656) #27	TRAV36DV7 (ENSCCAG00000013691) ##36	ENSCCAG00000017661 ##23	ENSCCAG00000018642 #25	TRAV39 (ENSCCAG00000020589)	TRAV40 (ENSCCAG00000026707)	TRAV41 (ENSCCAG00000028015) ##32	TRDC (ENSCCAG00000033911) #24	TRAC (ENSCCAG00000038072) #23	ENSCCAG00000035123 #22	ENSCCAG00000035365 #22	ABHD4 (ENSCCAG00000029397) #21	OXA1L (ENSCCAG00000036442) #19	SLC7A7 (ENSCCAG00000031142) #18	MRPL52 (ENSCCAG00000035013) #17	MMP14 (ENSCCAG00000023613) #16	LRP10 (ENSCCAG00000032914) #15	REM2 (ENSCCAG00000034864) #14	ENSCCAG00000025114 #13	PRMT5 (ENSCCAG00000034980) #12	HAUS4 (ENSCCAG00000033831) #11	AJUBA (ENSCCAG00000035773) #10	C14orf93 (ENSCCAG00000009885) #9	ENSCCAG00000032430 #8	CDH24 (ENSCCAG00000029972) #7	ACIN1 (ENSCCAG00000029776)
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000165951	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000153130.a.b.a.a	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000165951	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b
Gibbon	MODERN SPECIES	14	CDH24 (ENSNLEG00000014900) #7	PSMB5 (ENSNLEG00000034685) #8	C14orf93 (ENSNLEG00000014883) #9	ENSNLEG00000014877 #10	HAUS4 (ENSNLEG00000014853) #11	PRMT5 (ENSNLEG00000014810) #12	RBM23 (ENSNLEG00000014792) #13	REM2 (ENSNLEG00000014788) #14	LRP10 (ENSNLEG00000014773) #15	MMP14 (ENSNLEG00000014762) #16	SLC7A7 (ENSNLEG00000014725) #18	OXA1L (ENSNLEG00000014684) #19	ENSNLEG00000028419 #20	ENSNLEG00000034695	ABHD4 (ENSNLEG00000035873) #21	DAD1 (ENSNLEG00000014666) #22	ENSNLEG00000031059 #23	TRDV3 (ENSNLEG00000014664)	ENSNLEG00000027680	ENSNLEG00000029590 #24	ENSNLEG00000032780 ##32	ENSNLEG00000033140	ENSNLEG00000035066	TRAV38-2DV8 (ENSNLEG00000030966) #25	ENSNLEG00000031642 #26	ENSNLEG00000033391 ##36	ENSNLEG00000033545 #32	ENSNLEG00000035290 #27	ENSNLEG00000034603 #28	ENSNLEG00000030593 #29	ENSNLEG00000029757
Hominidae	ANCESTRAL SPECIES	14	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000165951	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000165951	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b
Gorilla	MODERN SPECIES	5	CDH24 (ENSGGOG00000007398) #7	PSMB11 (ENSGGOG00000007392)	PSMB5 (ENSGGOG00000026856) #8	C14orf93 (ENSGGOG00000014548) #9	AJUBA (ENSGGOG00000014539) #10	HAUS4 (ENSGGOG00000007504) #11	PRMT5 (ENSGGOG00000010839) #12	RBM23 (ENSGGOG00000015707) #13	REM2 (ENSGGOG00000015704) #14	LRP10 (ENSGGOG00000015695) #15	MMP14 (ENSGGOG00000001650) #16	MRPL52 (ENSGGOG00000001649) #17	SLC7A7 (ENSGGOG00000003694) #18	OXA1L (ENSGGOG00000003688) #19	ABHD4 (ENSGGOG00000007368) #21	DAD1 (ENSGGOG00000028137) #22	TRAC (ENSGGOG00000024280) #23	ENSGGOG00000022509	TRDV3 (ENSGGOG00000028378)	ENSGGOG00000037441	ENSGGOG00000043281 #24	TRAV41 (ENSGGOG00000041745) ##32	ENSGGOG00000036346	TRAV38-2DV8 (ENSGGOG00000036359) #25	TRAV38-1 (ENSGGOG00000039562) #26	TRAV36DV7 (ENSGGOG00000037745) ##36	ENSGGOG00000039312	ENSGGOG00000039281 #28	ENSGGOG00000037871 #29	TRAV29DV5 (ENSGGOG00000038663)	ENSGGOG00000036547
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000165951	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b
Human	MODERN SPECIES	5	PSMB5 (ENSG00000100804) #8	C14orf93 (ENSG00000100802) #9	AJUBA (ENSG00000129474) #10	ENSG00000259132	HAUS4 (ENSG00000092036) #11	PRMT5 (ENSG00000100462) #12	RBM23 (ENSG00000100461) #13	REM2 (ENSG00000139890) #14	LRP10 (ENSG00000197324) #15	MMP14 (ENSG00000157227) #16	MRPL52 (ENSG00000172590) #17	SLC7A7 (ENSG00000155465) #18	OXA1L (ENSG00000155463) #19	OR6J1 (ENSG00000255804)	ABHD4 (ENSG00000100439) #21	DAD1 (ENSG00000129562) #22	TRAC (ENSG00000277734) #23	TRAJ1 (ENSG00000211888)	TRAJ2 (ENSG00000211887)	TRAJ3 (ENSG00000211886)	TRAJ4 (ENSG00000211885)	TRAJ5 (ENSG00000211884)	TRAJ6 (ENSG00000211883)	TRAJ7 (ENSG00000211882)	TRAJ9 (ENSG00000211880)	TRAJ10 (ENSG00000211879)	TRAJ11 (ENSG00000211878)	TRAJ12 (ENSG00000211877)	TRAJ13 (ENSG00000211876)	TRAJ14 (ENSG00000211875)	TRAJ16 (ENSG00000211873)
Pan	ANCESTRAL SPECIES	8	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00940000173064	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00900000140957.C #32	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000153073.b.b.b.b.j #31
Chimpanzee	MODERN SPECIES	5	ACIN1 (ENSPTRG00000006159)	CDH24 (ENSPTRG00000006158) #7	PSMB5 (ENSPTRG00000006156) #8	C14H14orf93 (ENSPTRG00000006155) #9	AJUBA (ENSPTRG00000006154) #10	HAUS4 (ENSPTRG00000006153) #11	PRMT5 (ENSPTRG00000006152) #12	RBM23 (ENSPTRG00000006151) #13	REM2 (ENSPTRG00000006150) #14	LRP10 (ENSPTRG00000006149) #15	MMP14 (ENSPTRG00000006148) #16	MRPL52 (ENSPTRG00000006147) #17	SLC7A7 (ENSPTRG00000006146) #18	OXA1L (ENSPTRG00000006145) #19	ABHD4 (ENSPTRG00000006143) #21	DAD1 (ENSPTRG00000006141) #22	TRAC (ENSPTRG00000044038) #23	TRDV3 (ENSPTRG00000050301)	ENSPTRG00000048464	ENSPTRG00000048936 #24	TRAV41 (ENSPTRG00000046333) ##32	TRAV38-2DV8 (ENSPTRG00000042891) #25	TRAV38-1 (ENSPTRG00000046310) #26	ENSPTRG00000047747 ##36	ENSPTRG00000044743 #32	TRAV26-2 (ENSPTRG00000044511) #28	ENSPTRG00000046695 #29	ENSPTRG00000049224	ENSPTRG00000044789	ENSPTRG00000043764 #31	ENSPTRG00000049386 ##28
Bonobo	MODERN SPECIES	5	CDH24 (ENSPPAG00000035182) #7	PSMB11 (ENSPPAG00000005580)	PSMB5 (ENSPPAG00000043004) #8	C14orf93 (ENSPPAG00000036818) #9	AJUBA (ENSPPAG00000031512) #10	HAUS4 (ENSPPAG00000040161) #11	PRMT5 (ENSPPAG00000032055) #12	RBM23 (ENSPPAG00000037922) #13	REM2 (ENSPPAG00000041292) #14	LRP10 (ENSPPAG00000029431) #15	MMP14 (ENSPPAG00000037241) #16	MRPL52 (ENSPPAG00000033265) #17	SLC7A7 (ENSPPAG00000036954) #18	OXA1L (ENSPPAG00000034085) #19	ABHD4 (ENSPPAG00000030993) #21	DAD1 (ENSPPAG00000026093) #22	TRAC (ENSPPAG00000037107) #23	TRDV3 (ENSPPAG00000011053)	ENSPPAG00000009192	ENSPPAG00000014917 #24	TRAV41 (ENSPPAG00000033024) ##32	ENSPPAG00000033074	TRAV38-2DV8 (ENSPPAG00000032924) #25	ENSPPAG00000040762 #26	TRAV36DV7 (ENSPPAG00000032956) ##36	ENSPPAG00000032939 #32	TRAV26-2 (ENSPPAG00000032959) #28	ENSPPAG00000033355	ENSPPAG00000033053	ENSPPAG00000034991 #34	TRAV21 (ENSPPAG00000032865) #35
Orangutan	MODERN SPECIES	5	ENSPPYG00000005655	C14H14orf93 (ENSPPYG00000005653) #9	AJUBA (ENSPPYG00000005652) #10	HAUS4 (ENSPPYG00000005651) #11	PRMT5 (ENSPPYG00000005650) #12	RBM23 (ENSPPYG00000005649) #13	REM2 (ENSPPYG00000005648) #14	LRP10 (ENSPPYG00000005647) #15	MMP14 (ENSPPYG00000005646) #16	ENSPPYG00000005645 #17	SLC7A7 (ENSPPYG00000005643) #18	OXA1L (ENSPPYG00000005642) #19	ENSPPYG00000019928	OR6J1 (ENSPPYG00000005640)	ABHD4 (ENSPPYG00000005639) #21	DAD1 (ENSPPYG00000005638) #22	ENSPPYG00000031404	TRAC (ENSPPYG00000005637) #23	ENSPPYG00000033635	ENSPPYG00000034775	ENSPPYG00000040530	TRAJ18 (ENSPPYG00000032749)	ENSPPYG00000040270	ENSPPYG00000040330	ENSPPYG00000041342	ENSPPYG00000034396	ENSPPYG00000035246	ENSPPYG00000035728	ENSPPYG00000029962	ENSPPYG00000031151	ENSPPYG00000030890
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b.`b.b #21	ENSGT00390000016277.b.ab #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000160147.a.n #25	ENSGT01050000248319	ENSGT01050000248383	ENSGT01050000245453	ENSGT00940000165951	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00940000153130.a.b.a.a	ENSGT00940000162840.C #27
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b.ab #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000160147.a.n #25	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00940000153130.a.b.a.a	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b
Vervet Monkey	MODERN SPECIES	21	CDH24 (ENSCSAG00000016106) #7	PSMB11 (ENSCSAG00000019676)	PSMB5 (ENSCSAG00000016112) #8	C14orf93 (ENSCSAG00000016115) #9	AJUBA (ENSCSAG00000016121) #10	HAUS4 (ENSCSAG00000016126) #11	PRMT5 (ENSCSAG00000016179) #12	RBM23 (ENSCSAG00000016213) #13	REM2 (ENSCSAG00000016222) #14	LRP10 (ENSCSAG00000016235) #15	MMP14 (ENSCSAG00000016239) #16	MRPL52 (ENSCSAG00000016242) #17	SLC7A7 (ENSCSAG00000016247) #18	OXA1L (ENSCSAG00000016254) #19	ABHD4 (ENSCSAG00000016272) #21	DAD1 (ENSCSAG00000016279) #22	ENSCSAG00000016283	TRAC (ENSCSAG00000016292) #23	TRAJ2 (ENSCSAG00000019675)	ENSCSAG00000019674	ENSCSAG00000019673	ENSCSAG00000019672	ENSCSAG00000019671	ENSCSAG00000019670	ENSCSAG00000019669	TRAJ28 (ENSCSAG00000019668)	ENSCSAG00000019667	ENSCSAG00000019666	TRAJ42 (ENSCSAG00000019665)	ENSCSAG00000000333	ENSCSAG00000000334
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b.ab #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01050000248319	ENSGT01050000248383	ENSGT01050000245453	ENSGT00960000192634	ENSGT01050000247358	ENSGT00980000200245	ENSGT01080000258109	ENSGT01050000248103	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000160147.a.n #25	ENSGT00920000149497	ENSGT00940000163224.a
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b.ab #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000160147.a.n #25	ENSGT00940000163224.a	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00940000153130.a.b.a.a	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00510000047029.z.e.e.b.a.b
Pig-tailed macaque	MODERN SPECIES	287	ACIN1 (ENSMNEG00000035938)	CDH24 (ENSMNEG00000030948) #7	PSMB5 (ENSMNEG00000044213) #8	C14orf93 (ENSMNEG00000039045) #9	AJUBA (ENSMNEG00000033852) #10	HAUS4 (ENSMNEG00000040020) #11	PRMT5 (ENSMNEG00000035535) #12	RBM23 (ENSMNEG00000042442) #13	REM2 (ENSMNEG00000028496) #14	LRP10 (ENSMNEG00000039487) #15	MMP14 (ENSMNEG00000030751) #16	MRPL52 (ENSMNEG00000029791) #17	SLC7A7 (ENSMNEG00000043785) #18	OXA1L (ENSMNEG00000031247) #19	ENSMNEG00000033846 #21	DAD1 (ENSMNEG00000043891) #22	TRAC (ENSMNEG00000038635) #23	TRDV3 (ENSMNEG00000012962)	ENSMNEG00000024468	TRDC (ENSMNEG00000020614) #24	TRAV41 (ENSMNEG00000038293) ##32	TRAV38-2DV8 (ENSMNEG00000038225) #25	TRAV38-1 (ENSMNEG00000001485) #26	TRAV36DV7 (ENSMNEG00000004459) ##36	TRAV34 (ENSMNEG00000038004) #27	TRAV26-2 (ENSMNEG00000038137) #28	TRAV30 (ENSMNEG00000002565) #29	ENSMNEG00000040982	ENSMNEG00000020299	ENSMNEG00000026014	TRDV1 (ENSMNEG00000017026)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00940000163505.a.a.a.b.b.b	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b.ab #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00980000203093	ENSGT01050000248383	ENSGT01050000245453	ENSGT01030000240289	ENSGT00960000192634	ENSGT01050000247358	ENSGT01010000227904	ENSGT01050000247663	ENSGT00980000200245	ENSGT01080000258109	ENSGT01050000248103	ENSGT01030000240329	ENSGT00730000111639	ENSGT00550000075201 #24
Crab-eating macaque	MODERN SPECIES	17	PSMB5 (ENSMFAG00000040803) #8	PSMB11 (ENSMFAG00000010271)	ENSMFAG00000035808	C14orf93 (ENSMFAG00000001383) #9	AJUBA (ENSMFAG00000055086) #10	HAUS4 (ENSMFAG00000042332) #11	PRMT5 (ENSMFAG00000001324) #12	RBM23 (ENSMFAG00000037595) #13	REM2 (ENSMFAG00000032788) #14	LRP10 (ENSMFAG00000040578) #15	MMP14 (ENSMFAG00000038289) #16	MRPL52 (ENSMFAG00000000620) #17	SLC7A7 (ENSMFAG00000045060) #18	OXA1L (ENSMFAG00000015207) #19	ENSMFAG00000001529 #21	DAD1 (ENSMFAG00000029604) #22	ENSMFAG00000059308	ENSMFAG00000062552	ENSMFAG00000055649	ENSMFAG00000065697	TRAJ18 (ENSMFAG00000052354)	ENSMFAG00000063063	ENSMFAG00000053881	ENSMFAG00000056354	ENSMFAG00000061803	ENSMFAG00000057943	ENSMFAG00000056938	ENSMFAG00000065126	ENSMFAG00000061224	ENSMFAG00000056895	ENSMFAG00000058245
Rhesus	MODERN SPECIES	17	PSMB5 (ENSMMUG00000006007) #8	PSMB11 (ENSMMUG00000006008)	ENSMMUG00000013585	C7H14orf93 (ENSMMUG00000008477) #9	AJUBA (ENSMMUG00000008475) #10	HAUS4 (ENSMMUG00000002668) #11	PRMT5 (ENSMMUG00000001035) #12	RBM23 (ENSMMUG00000018381) #13	REM2 (ENSMMUG00000016098) #14	LRP10 (ENSMMUG00000016100) #15	MMP14 (ENSMMUG00000013665) #16	MRPL52 (ENSMMUG00000013663) #17	SLC7A7 (ENSMMUG00000000413) #18	OXA1L (ENSMMUG00000000411) #19	ABHD4 (ENSMMUG00000009441) #21	DAD1 (ENSMMUG00000000830) #22	ENSMMUG00000054763	ENSMMUG00000052151	ENSMMUG00000059713	ENSMMUG00000055037	TRAJ18 (ENSMMUG00000059574)	ENSMMUG00000065053	ENSMMUG00000060586	ENSMMUG00000062391	ENSMMUG00000058816	ENSMMUG00000057959	ENSMMUG00000056130	ENSMMUG00000060759	ENSMMUG00000049869	ENSMMUG00000055506	ENSMMUG00000057333
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b.ab #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01050000248319	ENSGT01050000248383	ENSGT01050000245453	ENSGT00960000192634	ENSGT01050000247358	ENSGT00980000200245	ENSGT01080000258109	ENSGT01050000248103	ENSGT00730000111639	ENSGT00940000165951	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00920000149497	ENSGT00940000163224.a
Olive baboon	MODERN SPECIES	17	CDH24 (ENSPANG00000019643) #7	PSMB11 (ENSPANG00000017114)	ENSPANG00000015305 #8	C14orf93 (ENSPANG00000011161) #9	AJUBA (ENSPANG00000011738) #10	HAUS4 (ENSPANG00000015306) #11	PRMT5 (ENSPANG00000017607) #12	RBM23 (ENSPANG00000001324) #13	REM2 (ENSPANG00000026142) #14	LRP10 (ENSPANG00000003911) #15	MMP14 (ENSPANG00000023206) #16	MRPL52 (ENSPANG00000021102) #17	SLC7A7 (ENSPANG00000020911) #18	OXA1L (ENSPANG00000011741) #19	ABHD4 (ENSPANG00000003912) #21	DAD1 (ENSPANG00000022399) #22	TRAC (ENSPANG00000022567) #23	ENSPANG00000046666	ENSPANG00000040216	ENSPANG00000049551	TRAJ18 (ENSPANG00000043807)	ENSPANG00000038254	ENSPANG00000040179	ENSPANG00000039002	ENSPANG00000037419	ENSPANG00000042807	ENSPANG00000046834	ENSPANG00000040954	ENSPANG00000050368	ENSPANG00000046979	ENSPANG00000046067
Cercopithecinae_d	ANCESTRAL SPECIES	109	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b.ab #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00940000170243	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000160147.a.n #25	ENSGT00940000160147.a.m #26	ENSGT00940000160183.d.a ##36	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000162840.D #29	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00510000047029.z.e.e.b.a.b	ENSGT00940000162524.B.f ##28
Drill	MODERN SPECIES	1047	CDH24 (ENSMLEG00000033931) #7	PSMB11 (ENSMLEG00000013212)	PSMB5 (ENSMLEG00000042905) #8	C14orf93 (ENSMLEG00000040701) #9	AJUBA (ENSMLEG00000001372) #10	ENSMLEG00000044268 #11	PRMT5 (ENSMLEG00000035801) #12	RBM23 (ENSMLEG00000039954) #13	REM2 (ENSMLEG00000032118) #14	LRP10 (ENSMLEG00000043127) #15	MMP14 (ENSMLEG00000000094) #16	MRPL52 (ENSMLEG00000035746) #17	SLC7A7 (ENSMLEG00000014136) #18	OXA1L (ENSMLEG00000029808) #19	ENSMLEG00000043691 #21	DAD1 (ENSMLEG00000041482) #22	TRAC (ENSMLEG00000039915) #23	TRDV3 (ENSMLEG00000025676)	ENSMLEG00000024199	TRAV38-2DV8 (ENSMLEG00000021755) #25	TRAV38-1 (ENSMLEG00000025157) #26
Sooty mangabey	MODERN SPECIES	288	CDH24 (ENSCATG00000011377) #7	PSMB11 (ENSCATG00000010453)	PSMB5 (ENSCATG00000044133) #8	C14orf93 (ENSCATG00000044847) #9	AJUBA (ENSCATG00000032482) #10	ENSCATG00000041460 #11	PRMT5 (ENSCATG00000014579) #12	RBM23 (ENSCATG00000017832) #13	REM2 (ENSCATG00000012864) #14	LRP10 (ENSCATG00000041990) #15	MMP14 (ENSCATG00000003284) #16	MRPL52 (ENSCATG00000030157) #17	ENSCATG00000030947 #18	OXA1L (ENSCATG00000009400) #19	ENSCATG00000022305 #21	DAD1 (ENSCATG00000016897) #22	TRAC (ENSCATG00000037406) #23	TRDV3 (ENSCATG00000019903)	ENSCATG00000019120	TRDC (ENSCATG00000018487) #24	TRAV41 (ENSCATG00000019226) ##32	TRAV38-2DV8 (ENSCATG00000019859) #25	TRAV38-1 (ENSCATG00000020630) #26	TRAV36DV7 (ENSCATG00000022068) ##36	TRAV34 (ENSCATG00000022605) #27	TRAV26-2 (ENSCATG00000023223) #28	TRAV30 (ENSCATG00000023212) #29	ENSCATG00000023532
Rhinopithecus	ANCESTRAL SPECIES	128	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634.g #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b.`b.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639	ENSGT00940000170243
Golden snub-nosed monkey	MODERN SPECIES	2083	PSMB11 (ENSRROG00000025908)	PSMB5 (ENSRROG00000034076) #8	C14orf93 (ENSRROG00000007559) #9	AJUBA (ENSRROG00000040110) #10	ENSRROG00000044756 #11	PRMT5 (ENSRROG00000028985) #12	RBM23 (ENSRROG00000044026) #13	REM2 (ENSRROG00000000769) #14	LRP10 (ENSRROG00000045101) #15	MMP14 (ENSRROG00000032097) #16	MRPL52 (ENSRROG00000038692) #17	SLC7A7 (ENSRROG00000036587) #18	OXA1L (ENSRROG00000031458) #19	ENSRROG00000003728 #20	ENSRROG00000030064 #21	DAD1 (ENSRROG00000032400) #22	TRAC (ENSRROG00000044326) #23	TRDV3 (ENSRROG00000007769)	ENSRROG00000026774
Black snub-nosed monkey	MODERN SPECIES	2556	ENSRBIG00000038153	ENSRBIG00000035585 #8	C14orf93 (ENSRBIG00000006042) #9	AJUBA (ENSRBIG00000039769) #10	ENSRBIG00000028589 #11	PRMT5 (ENSRBIG00000033709) #12	RBM23 (ENSRBIG00000039276) #13	REM2 (ENSRBIG00000031050) #14	LRP10 (ENSRBIG00000030290) #15	MMP14 (ENSRBIG00000041147) #16	MRPL52 (ENSRBIG00000016834) #17	SLC7A7 (ENSRBIG00000036121) #18	OXA1L (ENSRBIG00000043882) #19	ENSRBIG00000005098 #20	ENSRBIG00000030411 #21	DAD1 (ENSRBIG00000018620) #22	TRAC (ENSRBIG00000041666) #23	TRDV3 (ENSRBIG00000001337)	ENSRBIG00000022469	TRAV41 (ENSRBIG00000021879) ##32
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5703					HAUS4 (ENSTSYG00000012825) #11	PRMT5 (ENSTSYG00000026964) #12	RBM23 (ENSTSYG00000014755) #13	REM2 (ENSTSYG00000006124) #14	LRP10 (ENSTSYG00000006119) #15	MMP14 (ENSTSYG00000001822) #16	MRPL52 (ENSTSYG00000028483) #17	SLC7A7 (ENSTSYG00000014508) #18	OXA1L (ENSTSYG00000014505) #19	ENSTSYG00000026842 #20	ABHD4 (ENSTSYG00000014128) #21	DAD1 (ENSTSYG00000013309) #22	ENSTSYG00000033139
Tarsier	MODERN SPECIES	6554																ENSTSYG00000030192 #22
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #24	ENSGT00940000160147.a.p #25	ENSGT00940000160183.d.a ##36	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000161790	ENSGT00940000153130.a.a.a.c.a	ENSGT00900000140957.A.a.b #34	ENSGT00940000163708 #35	ENSGT00940000153073.a ##31	ENSGT00940000163052	ENSGT00940000163502 #37	ENSGT00940000153073.b.b.b.b #31	ENSGT00940000153130.a.a.b
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000160147.a.p #25	ENSGT00940000160183.d.a ##36	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000161790	ENSGT00940000153130.a.a.a.c.a	ENSGT00900000140957.A.a.b #34	ENSGT00940000163708 #35	ENSGT00940000163052	ENSGT00940000153073.a ##31	ENSGT00940000163507	ENSGT00900000140957.A.a.a ##32	ENSGT00940000153073.b.b.b.a.d.a ##31	ENSGT00940000153073.b.b.b.b #31
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000163507	ENSGT00900000140957.A.a.a ##32	ENSGT00940000153073.b.b.b.a.d.a ##31	ENSGT00940000153073.b.b.b.b #31	ENSGT00940000153130.a.a.b	ENSGT00940000154455.a.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.c ##31	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a ##31	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a
Coquerels sifaka	MODERN SPECIES	424	CDH24 (ENSPCOG00000003143) #7	PSMB5 (ENSPCOG00000021862) #8	C14orf93 (ENSPCOG00000010379) #9	AJUBA (ENSPCOG00000016135) #10	HAUS4 (ENSPCOG00000016850) #11	PRMT5 (ENSPCOG00000017358) #12	RBM23 (ENSPCOG00000018564) #13	REM2 (ENSPCOG00000025110) #14	LRP10 (ENSPCOG00000020765) #15	MMP14 (ENSPCOG00000020895) #16	MRPL52 (ENSPCOG00000027612) #17	SLC7A7 (ENSPCOG00000015863) #18	OXA1L (ENSPCOG00000024151) #19	ENSPCOG00000012865 #20	ABHD4 (ENSPCOG00000000567) #21	DAD1 (ENSPCOG00000012877) #22	ENSPCOG00000015924	TRAV18 (ENSPCOG00000013294) #37	TRAV9-1 (ENSPCOG00000009429)	TRAV8-3 (ENSPCOG00000013652) ##31	TRAV3 (ENSPCOG00000013386) ##31	TRAV2 (ENSPCOG00000013662)	OR10G2 (ENSPCOG00000008398)	SALL2 (ENSPCOG00000017266)	METTL3 (ENSPCOG00000024390)	TOX4 (ENSPCOG00000021038)	ENSPCOG00000026999	CHD8 (ENSPCOG00000014628)	SUPT16H (ENSPCOG00000006812)	RPGRIP1 (ENSPCOG00000024495)	ENSPCOG00000022866
Greater bamboo lemur	MODERN SPECIES	751	PSMB5 (ENSPSMG00000006294) #8	C14orf93 (ENSPSMG00000006267) #9	AJUBA (ENSPSMG00000006254) #10	HAUS4 (ENSPSMG00000006188) #11	PRMT5 (ENSPSMG00000005651) #12	RBM23 (ENSPSMG00000005248) #13	REM2 (ENSPSMG00000005112) #14	LRP10 (ENSPSMG00000005091) #15	MMP14 (ENSPSMG00000005056) #16	MRPL52 (ENSPSMG00000005045) #17	SLC7A7 (ENSPSMG00000005010) #18	OXA1L (ENSPSMG00000004934) #19	ENSPSMG00000004892 #20	OR6J1 (ENSPSMG00000004890)	ABHD4 (ENSPSMG00000004876) #21	DAD1 (ENSPSMG00000004854) #22	ENSPSMG00000004844 #23	ENSPSMG00000004832	ENSPSMG00000004823	ENSPSMG00000004818	ENSPSMG00000004812	ENSPSMG00000004804	ENSPSMG00000004793	ENSPSMG00000004788	ENSPSMG00000004776	ENSPSMG00000004774	ENSPSMG00000004769
Mouse lemur	MODERN SPECIES	22	CDH24 (ENSMICG00000002564) #7	PSMB5 (ENSMICG00000035988) #8	C14orf93 (ENSMICG00000009205) #9	AJUBA (ENSMICG00000009193) #10	HAUS4 (ENSMICG00000030177) #11	PRMT5 (ENSMICG00000015023) #12	RBM23 (ENSMICG00000006364) #13	REM2 (ENSMICG00000047327) #14	LRP10 (ENSMICG00000006358) #15	MMP14 (ENSMICG00000006204) #16	MRPL52 (ENSMICG00000006201) #17	SLC7A7 (ENSMICG00000036164) #18	OXA1L (ENSMICG00000001403) #19	ENSMICG00000028761 #20	ABHD4 (ENSMICG00000012697) #21	DAD1 (ENSMICG00000012690) #22	ENSMICG00000045157 #25	TRAV34 (ENSMICG00000047656) #27	ENSMICG00000048028 #31	TRAV21 (ENSMICG00000042869) #35	ENSMICG00000036456	TRAV9-2 (ENSMICG00000047919)	ENSMICG00000044028 ##31	TRAV9-1 (ENSMICG00000045305)	ENSMICG00000026679 ##31	TRAV3 (ENSMICG00000041451) ##31	OR10G3 (ENSMICG00000045513)	SALL2 (ENSMICG00000046438)	METTL3 (ENSMICG00000015037)	TOX4 (ENSMICG00000014965)	RAB2B (ENSMICG00000014937)
Bushbaby	MODERN SPECIES	340	PSMB11 (ENSOGAG00000034070)	PSMB5 (ENSOGAG00000005107) #8	C14orf93 (ENSOGAG00000005106) #9	AJUBA (ENSOGAG00000034052) #10	HAUS4 (ENSOGAG00000000586) #11	PRMT5 (ENSOGAG00000005094) #12	RBM23 (ENSOGAG00000014794) #13	REM2 (ENSOGAG00000027026) #14	LRP10 (ENSOGAG00000005090) #15	MMP14 (ENSOGAG00000012736) #16	SLC7A7 (ENSOGAG00000000632) #18	OXA1L (ENSOGAG00000000631) #19	ENSOGAG00000024512 #20	OR6J1 (ENSOGAG00000006226)	ABHD4 (ENSOGAG00000006223) #21	DAD1 (ENSOGAG00000006219) #22	TRAC (ENSOGAG00000027202) #23	TRDC (ENSOGAG00000006210) #24	ENSOGAG00000029709 #25
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a ##31	ENSGT00940000161790	ENSGT00940000153130.a.a.a.c.a
Tree shrew	MODERN SPECIES	1270																DAD1 (ENSTBEG00000009680) #22	ENSTBEG00000017526 #23	ENSTBEG00000017339
Glires	ANCESTRAL SPECIES	12	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a ##31	ENSGT00940000161790	ENSGT00940000153130.a.a.a.c.a
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000154455.a.a.g	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a ##31	ENSGT00940000161790
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01080000258996	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212
Naked mole-rat female	MODERN SPECIES	11	PSMB5 (ENSHGLG00000003365) #8	PSMB11 (ENSHGLG00000020072)	CDH24 (ENSHGLG00000003051) #7	ENSHGLG00000018997	C14orf119 (ENSHGLG00000011980)	ENSHGLG00000049606	CIROP (ENSHGLG00000035340)	CEBPE (ENSHGLG00000011620)	ENSHGLG00000011086	ENSHGLG00000040599	ENSHGLG00000050001	ENSHGLG00000009022	ENSHGLG00000043000	ENSHGLG00000044684	ENSHGLG00000008034 #21	DAD1 (ENSHGLG00000048015) #22	ENSHGLG00000006305	ENSHGLG00000045633	ENSHGLG00000034585	ENSHGLG00000041943	TRDC (ENSHGLG00000006155) #24	ENSHGLG00000048077	ENSHGLG00000048176	ENSHGLG00000047236 #25	ENSHGLG00000034626	ENSHGLG00000036470 #31	ENSHGLG00000035303 #32	ENSHGLG00000042675	ENSHGLG00000035335	ENSHGLG00000032838	ENSHGLG00000046197 #34
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00550000075201 #24	ENSGT00940000153073.b.b.b.b.g #31	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	13	CDH24 (ENSCPOG00000013121) #7	PSMB11 (ENSCPOG00000014048)	PSMB5 (ENSCPOG00000014047) #8	C14orf93 (ENSCPOG00000014044) #9	AJUBA (ENSCPOG00000023158) #10	HAUS4 (ENSCPOG00000003331) #11	PRMT5 (ENSCPOG00000014038) #12	REM2 (ENSCPOG00000024124) #14	LRP10 (ENSCPOG00000014495) #15	MMP14 (ENSCPOG00000024551) #16	MRPL52 (ENSCPOG00000009474) #17	SLC7A7 (ENSCPOG00000005730) #18	OXA1L (ENSCPOG00000022098) #19	ENSCPOG00000032843 #20	ABHD4 (ENSCPOG00000000850) #21	ENSCPOG00000031141 #22	ENSCPOG00000034500	TRDC (ENSCPOG00000000844) #24	ENSCPOG00000033000 #31	ENSCPOG00000040263 #31	OR4E2 (ENSCPOG00000026054)	OR10G2 (ENSCPOG00000039240)	SALL2 (ENSCPOG00000040220)	METTL3 (ENSCPOG00000002545)	TOX4 (ENSCPOG00000025504)	RAB2B (ENSCPOG00000026575)	CHD8 (ENSCPOG00000002538)	SUPT16H (ENSCPOG00000002534)	RPGRIP1 (ENSCPOG00000002526)	ENSCPOG00000001474	ENSCPOG00000035385
Guinea pig	MODERN SPECIES	81	KIF3A (ENSCPOG00000011249)	ENSCPOG00000031420	IL13 (ENSCPOG00000027078)	RAD50 (ENSCPOG00000002226)	IL5 (ENSCPOG00000004840)	IRF1 (ENSCPOG00000004848)	SLC22A5 (ENSCPOG00000005459)	SLC22A4 (ENSCPOG00000004913)	PDLIM4 (ENSCPOG00000027520)	P4HA2 (ENSCPOG00000008411)	CSF2 (ENSCPOG00000014074)	ACSL6 (ENSCPOG00000012748)	FNIP1 (ENSCPOG00000030775)	RAPGEF6 (ENSCPOG00000010242)	CDC42SE2 (ENSCPOG00000039035)	ENSCPOG00000000849 #22	LYRM7 (ENSCPOG00000039454)	HINT1 (ENSCPOG00000023046)	GPX3 (ENSCPOG00000006611)	TNIP1 (ENSCPOG00000006613)	ANXA6 (ENSCPOG00000005272)	CCDC69 (ENSCPOG00000031762)	GM2A (ENSCPOG00000040130)	SLC36A3 (ENSCPOG00000009677)	SLC36A2 (ENSCPOG00000008306)	ENSCPOG00000034918	ENSCPOG00000036108	ENSCPOG00000030030	ENSCPOG00000037129	ENSCPOG00000039847	ENSCPOG00000037647
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00550000075201 #24	ENSGT00940000153073.b.b.b.b.g #31
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	317	ENSODEG00000001783	PSMB5 (ENSODEG00000001779) #8	C14orf93 (ENSODEG00000001756) #9	ENSODEG00000001742 #10	HAUS4 (ENSODEG00000001722) #11	PRMT5 (ENSODEG00000001672) #12	REM2 (ENSODEG00000001644) #14	LRP10 (ENSODEG00000001621) #15	MMP14 (ENSODEG00000001611) #16	MRPL52 (ENSODEG00000001600) #17	SLC7A7 (ENSODEG00000001562) #18	OXA1L (ENSODEG00000001527) #19	ENSODEG00000018736 #20	ENSODEG00000001719	ABHD4 (ENSODEG00000001709) #21	ENSODEG00000001700 #22	ENSODEG00000001687
Degu	MODERN SPECIES	96					ENSODEG00000009729	GRIPAP1 (ENSODEG00000009943)	KCND1 (ENSODEG00000010342)	OTUD5 (ENSODEG00000009050)	PIM2 (ENSODEG00000009339)	SLC35A2 (ENSODEG00000009076)	ENSODEG00000008988	TIMM17B (ENSODEG00000010704)	PCSK1N (ENSODEG00000010528)	ENSODEG00000009461	GATA1 (ENSODEG00000008814)	ENSODEG00000011241 #22	ENSODEG00000009872	SUV39H1 (ENSODEG00000010079)	WAS (ENSODEG00000009320)	ENSODEG00000009972	WDR13 (ENSODEG00000009758)	ENSODEG00000009372	ENSODEG00000019740	TBC1D25 (ENSODEG00000009376)	ENSODEG00000009371	PORCN (ENSODEG00000008780)	FTSJ1 (ENSODEG00000009855)	ENSODEG00000019635	ENSODEG00000009360	ENSODEG00000009058	ZNF182 (ENSODEG00000010486)
Degu	MODERN SPECIES	180								ENSODEG00000000558	LRRN3 (ENSODEG00000018623)	ENSODEG00000000581	ENSODEG00000018617	DNAJB9 (ENSODEG00000000633)	THAP5 (ENSODEG00000000636)	LRIG3 (ENSODEG00000000740)	ENSODEG00000000788	ENSODEG00000018604 #22	TAFA2 (ENSODEG00000000831)	ENSODEG00000001323	USP15 (ENSODEG00000001379)	MON2 (ENSODEG00000001456)	PPM1H (ENSODEG00000001605)	ENSODEG00000018680	ENSODEG00000018759	ENSODEG00000018696	ENSODEG00000001649	ENSODEG00000001660	AVPR1A (ENSODEG00000001671)
Long-tailed chinchilla	MODERN SPECIES	116	CDH24 (ENSCLAG00000011914) #7	PSMB11 (ENSCLAG00000010224)	PSMB5 (ENSCLAG00000011138) #8	C14orf93 (ENSCLAG00000010663) #9	AJUBA (ENSCLAG00000011137) #10	HAUS4 (ENSCLAG00000013026) #11	PRMT5 (ENSCLAG00000010579) #12	REM2 (ENSCLAG00000011939) #14	LRP10 (ENSCLAG00000010502) #15	MMP14 (ENSCLAG00000009784) #16	MRPL52 (ENSCLAG00000010931) #17	SLC7A7 (ENSCLAG00000011517) #18	OXA1L (ENSCLAG00000009417) #19	ENSCLAG00000009926 #20	ABHD4 (ENSCLAG00000012500) #21	DAD1 (ENSCLAG00000011874) #22	ENSCLAG00000012044	TRDC (ENSCLAG00000010037) #24	ENSCLAG00000010144 #31
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763.j #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000153073.b.b.b.a.f ##31	ENSGT00940000153130.a.b.a.a	ENSGT00940000161790	ENSGT00940000153073.b.b.b.a.e ##31	ENSGT00940000153130.a.a.a.c.a	ENSGT00900000140957.A.a.b #34	ENSGT00940000160183.c #36	ENSGT00940000163502 #37	ENSGT00940000153130.a.a.b	ENSGT00940000154455.a.a.g.b
Marmotini	ANCESTRAL SPECIES	15	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763.j #17	ENSGT00940000160134 #18	ENSGT00530000063506.B.o #19	ENSGT01090000260011.B.s #20	ENSGT01090000260011.B.t #20	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01080000258996	ENSGT01010000223901	ENSGT00550000075201 #24	ENSGT00940000160183.d.a ##36	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000153073.b.b.b.a.f ##31	ENSGT00940000153130.a.b.a.a	ENSGT00940000161790	ENSGT00900000140957.A.a.a.c.a.a ##32	ENSGT00940000162998.b	ENSGT00940000163058
Alpin marmot	MODERN SPECIES	1	AJUBA (ENSMMMG00000013718) #10	HAUS4 (ENSMMMG00000013733) #11	PRMT5 (ENSMMMG00000013742) #12	RBM23 (ENSMMMG00000013775) #13	REM2 (ENSMMMG00000013781) #14	LRP10 (ENSMMMG00000013796) #15	MMP14 (ENSMMMG00000013801) #16	MRPL52 (ENSMMMG00000013813) #17	SLC7A7 (ENSMMMG00000013825) #18	ENSMMMG00000013841 #19	ENSMMMG00000013866 #20	ENSMMMG00000013869 #20	ENSMMMG00000013873 #20	ENSMMMG00000013877	ABHD4 (ENSMMMG00000013878) #21	DAD1 (ENSMMMG00000013891) #22	ENSMMMG00000013901	ENSMMMG00000013930	ENSMMMG00000013935	ENSMMMG00000013936	TRDC (ENSMMMG00000013939) #24	ENSMMMG00000013943	ENSMMMG00000013946	ENSMMMG00000013951 ##32	ENSMMMG00000013953 #25	TRAV34 (ENSMMMG00000013955) #27	TRAV29DV5 (ENSMMMG00000013960)	ENSMMMG00000013970	TRAV22 (ENSMMMG00000013973) #34	TRAV20 (ENSMMMG00000013979) #36	ENSMMMG00000013981 #37
Marmotini_b	ANCESTRAL SPECIES	58	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763.j #17	ENSGT00940000160134 #18	ENSGT00530000063506.B.o #19	ENSGT00910000148211	ENSGT01090000260011.B.s #20	ENSGT01090000260011.B.t #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01080000258996	ENSGT01010000223901	ENSGT00550000075201 #24	ENSGT00940000160183.d.a ##36	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000153073.b.b.b.a.f ##31	ENSGT00940000153130.a.b.a.a	ENSGT00940000161790
Arctic ground squirrel	MODERN SPECIES	329	CDH24 (ENSUPAG00010011199) #7	PSMB11 (ENSUPAG00010011206)	PSMB5 (ENSUPAG00010011210) #8	C14orf93 (ENSUPAG00010011216) #9	AJUBA (ENSUPAG00010011224) #10	HAUS4 (ENSUPAG00010011240) #11	PRMT5 (ENSUPAG00010011261) #12	RBM23 (ENSUPAG00010011269) #13	LRP10 (ENSUPAG00010011283) #15	MMP14 (ENSUPAG00010011304) #16	MRPL52 (ENSUPAG00010011316) #17	SLC7A7 (ENSUPAG00010011328) #18	ENSUPAG00010011358 #19	ENSUPAG00010011365	ENSUPAG00010011367 #21	DAD1 (ENSUPAG00010011383) #22	ENSUPAG00010011393	ENSUPAG00010011399	ENSUPAG00010011401	ENSUPAG00010011402	TRDC (ENSUPAG00010011406) #24	ENSUPAG00010011410	ENSUPAG00010011419 ##36	ENSUPAG00010011423	TRAV34 (ENSUPAG00010011430) #27	TRAV29DV5 (ENSUPAG00010011432)	ENSUPAG00010011436	ENSUPAG00010011442 ##31	ENSUPAG00010011447	ENSUPAG00010011450
Squirrel	MODERN SPECIES	322	PSMB5 (ENSSTOG00000007134) #8	C14orf93 (ENSSTOG00000007124) #9	AJUBA (ENSSTOG00000023817) #10	HAUS4 (ENSSTOG00000020110) #11	PRMT5 (ENSSTOG00000010374) #12	RBM23 (ENSSTOG00000010354) #13	REM2 (ENSSTOG00000010340) #14	LRP10 (ENSSTOG00000010323) #15	MMP14 (ENSSTOG00000027121) #16	MRPL52 (ENSSTOG00000010317) #17	SLC7A7 (ENSSTOG00000003328) #18	ENSSTOG00000003318	ENSSTOG00000032926 #20	ENSSTOG00000034134 #20	ABHD4 (ENSSTOG00000023335) #21	DAD1 (ENSSTOG00000007925) #22	TRAV29DV5 (ENSSTOG00000025427)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	PSMB11 (ENSSVLG00005002893)	ENSSVLG00005002903 #8	C14orf93 (ENSSVLG00005002934) #9	AJUBA (ENSSVLG00005002965) #10	HAUS4 (ENSSVLG00005002983) #11	PRMT5 (ENSSVLG00005003037) #12	RBM23 (ENSSVLG00005003194) #13	REM2 (ENSSVLG00005003310) #14	LRP10 (ENSSVLG00005003327) #15	MMP14 (ENSSVLG00005003350) #16	ENSSVLG00005003381 #17	SLC7A7 (ENSSVLG00005003413) #18	OXA1L (ENSSVLG00005003453) #19	ENSSVLG00005003497	ABHD4 (ENSSVLG00005003510) #21	ENSSVLG00005003529 #22	ENSSVLG00005003608 #23	ENSSVLG00005003698	ENSSVLG00005003706	ENSSVLG00005003714	ENSSVLG00005003720	TRDV3 (ENSSVLG00005003727)	ENSSVLG00005003739	ENSSVLG00005003749 #25	TRAV36DV7 (ENSSVLG00005003757) ##36	ENSSVLG00005003770 #32	TRAV29DV5 (ENSSVLG00005003781)	ENSSVLG00005003795	ENSSVLG00005003805 ##31	ENSSVLG00005003811	ENSSVLG00005003825 #34
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005004846	ENSSVLG00005004866	ENSSVLG00005004896	SAA4 (ENSSVLG00005004914)	ENSSVLG00005004937	SAAL1 (ENSSVLG00005004983)	TPH1 (ENSSVLG00005005094)	SERGEF (ENSSVLG00005005160)	KCNC1 (ENSSVLG00005005188)	MYOD1 (ENSSVLG00005005222)	OTOG (ENSSVLG00005005330)	USH1C (ENSSVLG00005005925)	ABCC8 (ENSSVLG00005006593)	KCNJ11 (ENSSVLG00005007700)	NUCB2 (ENSSVLG00005007770)	ENSSVLG00005007915 #22	PIK3C2A (ENSSVLG00005007973)	ENSSVLG00005008146	PLEKHA7 (ENSSVLG00005008253)	ENSSVLG00005008507	SOX6 (ENSSVLG00005008583)	INSC (ENSSVLG00005008947)	CALCB (ENSSVLG00005009182)	CALCA (ENSSVLG00005009221)	CYP2R1 (ENSSVLG00005009273)	PDE3B (ENSSVLG00005009340)	ENSSVLG00005009603	ENSSVLG00005009633	ENSSVLG00005009657	PSMA1 (ENSSVLG00005009698)	ENSSVLG00005009821
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a ##31	ENSGT00940000161790	ENSGT00940000153130.a.a.a.c.a
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00710000106790	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a ##31	ENSGT00940000161790	ENSGT00940000153130.a.a.a.c.a
Muroidea	ANCESTRAL SPECIES	36	ENSGT00710000106790	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a ##31	ENSGT00940000161790	ENSGT00940000153130.a.a.a.c.a
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000153073.b.b.b.a.h ##31	ENSGT00900000140957.A.a.b #34	ENSGT00940000163502 #37	ENSGT00940000153130.a.a.b.f.b.a.b
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01020000232693	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.r.b
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	3	Psmb11 (ENSCGRG00001002129)	Psmb5 (ENSCGRG00001016436) #8	4931414P19Rik (ENSCGRG00001001465) #9	Ajuba (ENSCGRG00001014156) #10	ENSCGRG00001005166	Haus4 (ENSCGRG00001024703) #11	Prmt5 (ENSCGRG00001014293) #12	Rem2 (ENSCGRG00001003504) #14	Lrp10 (ENSCGRG00001009012) #15	Mmp14 (ENSCGRG00001015766) #16	Mrpl52 (ENSCGRG00001009095) #17	Slc7a7 (ENSCGRG00001021388) #18	Oxa1l (ENSCGRG00001023578) #19	Or6e1 (ENSCGRG00001005325) #20	Abhd4 (ENSCGRG00001022057) #21	ENSCGRG00001018967 #22
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001007634	Fancm (ENSCGRG00001023573)	ENSCGRG00001020987	Prpf39 (ENSCGRG00001022389)	Togaram1 (ENSCGRG00001020874)	Klhl28 (ENSCGRG00001022249)	Gm527 (ENSCGRG00001022771)	ENSCGRG00001023445	ENSCGRG00001003341	ENSCGRG00001006380	ENSCGRG00001011106	ENSCGRG00001009504	ENSCGRG00001010478	Lrfn5 (ENSCGRG00001012425)	ENSCGRG00001010233	ENSCGRG00001013073 #22	ENSCGRG00001021012	Fbxo33 (ENSCGRG00001023018)	ENSCGRG00001001417	ENSCGRG00001015024	Pnn (ENSCGRG00001015998)	Trappc6b (ENSCGRG00001016994)	Gemin2 (ENSCGRG00001017720)	Sec23a (ENSCGRG00001019639)	ENSCGRG00001002230	ENSCGRG00001003851	Clec14a (ENSCGRG00001008667)	Sstr1 (ENSCGRG00001011700)	Ttc6 (ENSCGRG00001002787)	ENSCGRG00001006180	Foxa1 (ENSCGRG00001007733)
Golden Hamster	MODERN SPECIES	811	Slc7a8 (ENSMAUG00000019384)	Acin1 (ENSMAUG00000000504)	ENSMAUG00000012369	Cdh24 (ENSMAUG00000021615) #7	Psmb11 (ENSMAUG00000017123)	ENSMAUG00000014813	ENSMAUG00000017591 #8	4931414P19Rik (ENSMAUG00000013152) #9	Ajuba (ENSMAUG00000014919) #10	Rem2 (ENSMAUG00000021314) #14	Lrp10 (ENSMAUG00000013461) #15	Mmp14 (ENSMAUG00000018577) #16	Mrpl52 (ENSMAUG00000000585) #17	Slc7a7 (ENSMAUG00000005323) #18	Oxa1l (ENSMAUG00000005100) #19	Dad1 (ENSMAUG00000001827) #22
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01020000232693	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.r.b
Northern American deer mouse	MODERN SPECIES	22	Cdh24 (ENSPEMG00000018892) #7	Psmb11 (ENSPEMG00000026627)	Psmb5 (ENSPEMG00000019276) #8	4931414P19Rik (ENSPEMG00000015496) #9	Ajuba (ENSPEMG00000019210) #10	Haus4 (ENSPEMG00000016122) #11	Prmt5 (ENSPEMG00000017614) #12	Rem2 (ENSPEMG00000011668) #14	Lrp10 (ENSPEMG00000013768) #15	Mmp14 (ENSPEMG00000014840) #16	Mrpl52 (ENSPEMG00000010147) #17	Slc7a7 (ENSPEMG00000016955) #18	Oxa1l (ENSPEMG00000016711) #19	Or6e1 (ENSPEMG00000004435) #20	Abhd4 (ENSPEMG00000003226) #21	Dad1 (ENSPEMG00000009539) #22	Trac (ENSPEMG00000025944)	ENSPEMG00000028259	ENSPEMG00000028337	ENSPEMG00000029710	ENSPEMG00000025126 #24	ENSPEMG00000024488 ##27	Trav21-dv12 (ENSPEMG00000026566) #28	Trav19 (ENSPEMG00000029181)	ENSPEMG00000029205	Trav17 (ENSPEMG00000029744) ##31	ENSPEMG00000030702	ENSPEMG00000027996	ENSPEMG00000031273 #34	ENSPEMG00000025072	ENSPEMG00000029560
Prairie vole	MODERN SPECIES	163	ENSMOCG00000015141 #8	4931414P19Rik (ENSMOCG00000012978) #9	Ajuba (ENSMOCG00000014127) #10	Haus4 (ENSMOCG00000005352) #11	Prmt5 (ENSMOCG00000017320) #12	Rem2 (ENSMOCG00000000581) #14	Lrp10 (ENSMOCG00000006687) #15	Mmp14 (ENSMOCG00000006065) #16	ENSMOCG00000016920 #17	Slc7a7 (ENSMOCG00000000960) #18	Oxa1l (ENSMOCG00000013102) #19	ENSMOCG00000005060	Or6e1 (ENSMOCG00000003935) #20	ENSMOCG00000001745	Abhd4 (ENSMOCG00000021742) #21	Dad1 (ENSMOCG00000020248) #22
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000153130.a.b.a.b	ENSGT00940000153073.b.b.b.a.h ##31	ENSGT00940000161790.i	ENSGT00900000140957.A.a.b #34	ENSGT00940000161790.j
Mus	ANCESTRAL SPECIES	8	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135794	ENSGT00950000186557	ENSGT00860000136119	ENSGT00950000186467	ENSGT00950000186478	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000166072	ENSGT00940000162840.C #27	ENSGT00940000162524.A #28	ENSGT00940000153130.a.a.a.c.b	ENSGT00940000163224.b.b
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135636	ENSGT00860000135984	ENSGT00860000135941	ENSGT00950000186533	ENSGT00860000135743	ENSGT00950000186527	ENSGT00950000186517	ENSGT00950000186473	ENSGT00950000186498	ENSGT00950000186489	ENSGT00950000186528	ENSGT00860000136090	ENSGT00860000136200	ENSGT00860000135673
Ryukyu mouse	MODERN SPECIES	5	Cdh24 (MGP_CAROLIEiJ_G0019264) #7	Psmb11 (MGP_CAROLIEiJ_G0019263)	Psmb5 (MGP_CAROLIEiJ_G0019262) #8	4931414P19Rik (MGP_CAROLIEiJ_G0019261) #9	Ajuba (MGP_CAROLIEiJ_G0019260) #10	Haus4 (MGP_CAROLIEiJ_G0019259) #11	Prmt5 (MGP_CAROLIEiJ_G0019258) #12	Rem2 (MGP_CAROLIEiJ_G0019257) #14	Lrp10 (MGP_CAROLIEiJ_G0019256) #15	Mmp14 (MGP_CAROLIEiJ_G0019255) #16	Mrpl52 (MGP_CAROLIEiJ_G0019254) #17	Slc7a7 (MGP_CAROLIEiJ_G0019253) #18	Oxa1l (MGP_CAROLIEiJ_G0019252) #19	Or6e1 (MGP_CAROLIEiJ_G0019251) #20	Abhd4 (MGP_CAROLIEiJ_G0019250) #21	Dad1 (MGP_CAROLIEiJ_G0019249) #22	Trac (MGP_CAROLIEiJ_G0002120)	Traj2 (MGP_CAROLIEiJ_G0002178)	Traj3 (MGP_CAROLIEiJ_G0002177)	Traj4 (MGP_CAROLIEiJ_G0002176)	Traj5 (MGP_CAROLIEiJ_G0002175)	Traj6 (MGP_CAROLIEiJ_G0002174)	Traj7 (MGP_CAROLIEiJ_G0002173)	Traj9 (MGP_CAROLIEiJ_G0002172)	Traj11 (MGP_CAROLIEiJ_G0002171)	MGP_CAROLIEiJ_G0002170	Traj13 (MGP_CAROLIEiJ_G0002169)	Traj15 (MGP_CAROLIEiJ_G0002168)	Traj16 (MGP_CAROLIEiJ_G0002167)	Traj17 (MGP_CAROLIEiJ_G0002166)	Traj18 (MGP_CAROLIEiJ_G0002165)
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000159567 #7	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135636	ENSGT00860000135984	ENSGT00860000135941	ENSGT00950000186533	ENSGT00860000135743	ENSGT00950000186527	ENSGT00950000186517	ENSGT00950000186473	ENSGT00950000186498	ENSGT00950000186489	ENSGT00950000186528	ENSGT00860000136090	ENSGT00860000136200	ENSGT00860000135673
Mouse	MODERN SPECIES	5	Cdh24 (ENSMUSG00000059674) #7	Psmb11 (ENSMUSG00000072423)	Psmb5 (ENSMUSG00000022193) #8	4931414P19Rik (ENSMUSG00000022179) #9	Ajuba (ENSMUSG00000022178) #10	Haus4 (ENSMUSG00000022177) #11	Prmt5 (ENSMUSG00000023110) #12	Rem2 (ENSMUSG00000022176) #14	Lrp10 (ENSMUSG00000022175) #15	Mmp14 (ENSMUSG00000000957) #16	Mrpl52 (ENSMUSG00000010406) #17	Slc7a7 (ENSMUSG00000000958) #18	Oxa1l (ENSMUSG00000000959) #19	Or6e1 (ENSMUSG00000048153) #20	Abhd4 (ENSMUSG00000040997) #21	Dad1 (ENSMUSG00000022174) #22	Trac (ENSMUSG00000076928)	Traj2 (ENSMUSG00000076926)	Traj3 (ENSMUSG00000076925)	Traj4 (ENSMUSG00000076924)	Traj5 (ENSMUSG00000076923)	Traj6 (ENSMUSG00000076922)	Traj7 (ENSMUSG00000076921)	Traj9 (ENSMUSG00000076919)	Traj11 (ENSMUSG00000076918)	Traj12 (ENSMUSG00000076917)	Traj13 (ENSMUSG00000076916)	Traj15 (ENSMUSG00000076914)	Traj16 (ENSMUSG00000076913)	Traj17 (ENSMUSG00000076912)	Traj18 (ENSMUSG00000076911)
Mus_C	ANCESTRAL SPECIES	20	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135636	ENSGT00860000135984	ENSGT00860000135941	ENSGT00950000186533	ENSGT00860000135743	ENSGT00950000186527	ENSGT00950000186517	ENSGT00950000186473	ENSGT00950000186498	ENSGT00950000186489	ENSGT00950000186528	ENSGT00860000136090	ENSGT00860000136200	ENSGT00860000135673
Steppe mouse	MODERN SPECIES	2984	Psmb11 (ENSMSIG00000016415)	Psmb5 (ENSMSIG00000016401) #8	4931414P19Rik (ENSMSIG00000016385) #9	Ajuba (ENSMSIG00000016353) #10	Haus4 (ENSMSIG00000016328) #11	Prmt5 (ENSMSIG00000016312) #12	Rem2 (ENSMSIG00000016298) #14	Lrp10 (ENSMSIG00000016275) #15	Mmp14 (ENSMSIG00000016218) #16	ENSMSIG00000016189 #17	Slc7a7 (ENSMSIG00000016170) #18	Oxa1l (ENSMSIG00000016147) #19	Or6e1 (ENSMSIG00000016138) #20	ENSMSIG00000016133	Abhd4 (ENSMSIG00000016112) #21	Dad1 (ENSMSIG00000016087) #22	Trac (ENSMSIG00000016077)	ENSMSIG00000016075	Trdc (ENSMSIG00000016073) #24	ENSMSIG00000016066	ENSMSIG00000016053 #25	ENSMSIG00000016039	ENSMSIG00000016011 #28
spretus	MODERN SPECIES	5	Cdh24 (MGP_SPRETEiJ_G0020154) #7	Psmb11 (MGP_SPRETEiJ_G0020153)	Psmb5 (MGP_SPRETEiJ_G0020152) #8	4931414P19Rik (MGP_SPRETEiJ_G0020151) #9	Ajuba (MGP_SPRETEiJ_G0020150) #10	Haus4 (MGP_SPRETEiJ_G0020149) #11	Prmt5 (MGP_SPRETEiJ_G0020148) #12	Rem2 (MGP_SPRETEiJ_G0020147) #14	Lrp10 (MGP_SPRETEiJ_G0020146) #15	Mmp14 (MGP_SPRETEiJ_G0020145) #16	Mrpl52 (MGP_SPRETEiJ_G0020144) #17	Slc7a7 (MGP_SPRETEiJ_G0020143) #18	Oxa1l (MGP_SPRETEiJ_G0020142) #19	Or6e1 (MGP_SPRETEiJ_G0020141) #20	Abhd4 (MGP_SPRETEiJ_G0020140) #21	Dad1 (MGP_SPRETEiJ_G0020139) #22	Trac (MGP_SPRETEiJ_G0002246)	Traj2 (MGP_SPRETEiJ_G0002307)	Traj3 (MGP_SPRETEiJ_G0002306)	Traj4 (MGP_SPRETEiJ_G0002305)	Traj5 (MGP_SPRETEiJ_G0002304)	Traj6 (MGP_SPRETEiJ_G0002303)	Traj7 (MGP_SPRETEiJ_G0002302)	Traj9 (MGP_SPRETEiJ_G0002301)	Traj11 (MGP_SPRETEiJ_G0002300)	Traj12 (MGP_SPRETEiJ_G0002299)	Traj13 (MGP_SPRETEiJ_G0002298)	Traj15 (MGP_SPRETEiJ_G0002297)	Traj16 (MGP_SPRETEiJ_G0002296)	Traj17 (MGP_SPRETEiJ_G0002295)	Traj18 (MGP_SPRETEiJ_G0002294)
Shrew mouse	MODERN SPECIES	21	Cdh24 (MGP_PahariEiJ_G0030283) #7	Psmb11 (MGP_PahariEiJ_G0030282)	Psmb5 (MGP_PahariEiJ_G0030281) #8	4931414P19Rik (MGP_PahariEiJ_G0030280) #9	Ajuba (MGP_PahariEiJ_G0030279) #10	Haus4 (MGP_PahariEiJ_G0030278) #11	Prmt5 (MGP_PahariEiJ_G0030277) #12	Rem2 (MGP_PahariEiJ_G0030276) #14	Lrp10 (MGP_PahariEiJ_G0030275) #15	Mmp14 (MGP_PahariEiJ_G0030274) #16	Mrpl52 (MGP_PahariEiJ_G0030273) #17	MGP_PahariEiJ_G0030272 #18	Oxa1l (MGP_PahariEiJ_G0030271) #19	Or6e1 (MGP_PahariEiJ_G0030270) #20	Abhd4 (MGP_PahariEiJ_G0030269) #21	Dad1 (MGP_PahariEiJ_G0030268) #22	Trac (MGP_PahariEiJ_G0001958)	Traj2 (MGP_PahariEiJ_G0002028)	Traj3 (MGP_PahariEiJ_G0002027)	Traj4 (MGP_PahariEiJ_G0002026)	Traj5 (MGP_PahariEiJ_G0002025)	Traj6 (MGP_PahariEiJ_G0002024)	MGP_PahariEiJ_G0002023	MGP_PahariEiJ_G0002022	Traj11 (MGP_PahariEiJ_G0002021)	Traj12 (MGP_PahariEiJ_G0002020)	Traj13 (MGP_PahariEiJ_G0002019)	Traj15 (MGP_PahariEiJ_G0002018)	Traj16 (MGP_PahariEiJ_G0002017)	Traj17 (MGP_PahariEiJ_G0002016)	Traj18 (MGP_PahariEiJ_G0002015)
Rat	MODERN SPECIES	6	Acin1 (ENSRNOG00000013533)	Gm17606 (ENSRNOG00000065567)	Cdh24 (ENSRNOG00000013503) #7	Psmb5 (ENSRNOG00000013386) #8	RGD1565222 (ENSRNOG00000013317) #9	Ajuba (ENSRNOG00000012791) #10	Haus4 (ENSRNOG00000039284) #11	Prmt5 (ENSRNOG00000012046) #12	Rem2 (ENSRNOG00000011646) #14	Lrp10 (ENSRNOG00000011592) #15	Mmp14 (ENSRNOG00000010947) #16	Slc7a7 (ENSRNOG00000010296) #18	Oxa1l (ENSRNOG00000009713) #19	Or6e1 (ENSRNOG00000068252) #20	Abhd4 (ENSRNOG00000009244) #21	Dad1 (ENSRNOG00000009090) #22	ENSRNOG00000070834	ENSRNOG00000067178	AC097037.1 (ENSRNOG00000033109)	ENSRNOG00000065679 #24	ENSRNOG00000066946	ENSRNOG00000065420	LOC108353026 (ENSRNOG00000068621) #27	Trav21-dv12 (ENSRNOG00000065401) #28	ENSRNOG00000065769	LOC120096971 (ENSRNOG00000042103)	ENSRNOG00000066538	ENSRNOG00000065085	AABR07017902.1 (ENSRNOG00000009074)	ENSRNOG00000064043 #34	AABR07017868.4 (ENSRNOG00000056892)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1079	ENSNGAG00000020569	Cdh24 (ENSNGAG00000010716) #7	Psmb5 (ENSNGAG00000014706) #8	ENSNGAG00000017377	4931414P19Rik (ENSNGAG00000018515) #9	ENSNGAG00000020767 #10	Haus4 (ENSNGAG00000001010) #11	Prmt5 (ENSNGAG00000004212) #12	Rem2 (ENSNGAG00000010180) #14	Lrp10 (ENSNGAG00000001455) #15	Mmp14 (ENSNGAG00000011134) #16	Mrpl52 (ENSNGAG00000011028) #17	Slc7a7 (ENSNGAG00000014120) #18	Oxa1l (ENSNGAG00000015527) #19	Abhd4 (ENSNGAG00000019786) #21	Dad1 (ENSNGAG00000002448) #22
Kangaroo rat	MODERN SPECIES	403	ENSDORG00000010574	Cdh24 (ENSDORG00000010568) #7	Psmb11 (ENSDORG00000010567)	Psmb5 (ENSDORG00000024250) #8	ENSDORG00000010563 #8	4931414P19Rik (ENSDORG00000004064) #9	ENSDORG00000023447 #10	Prmt5 (ENSDORG00000004929) #12	ENSDORG00000004926 #13	Rem2 (ENSDORG00000004924) #14	Lrp10 (ENSDORG00000004922) #15	Mmp14 (ENSDORG00000000144) #16	Slc7a7 (ENSDORG00000011331) #18	Or6e1 (ENSDORG00000028076) #20	Abhd4 (ENSDORG00000008204) #21	Dad1 (ENSDORG00000008173) #22	ENSDORG00000025415	ENSDORG00000026434
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000162200	ENSGT00940000157841 #8	ENSGT00390000012708 #9	ENSGT00940000160978 #10	ENSGT00390000014634 #11	ENSGT00390000001141 #12	ENSGT00940000162546 #13	ENSGT00940000160062 #14	ENSGT00940000160783 #15	ENSGT00940000157808 #16	ENSGT00390000005763 #17	ENSGT00940000160134 #18	ENSGT00530000063506.B #19	ENSGT01090000260011.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01060000252029	ENSGT00730000111639	ENSGT00550000075201 #24	ENSGT00900000140957.B ##32	ENSGT00940000163224.a	ENSGT00940000160147.a #25	ENSGT00940000153130.a.b.b	ENSGT00950000184977 #30	ENSGT00940000163717 #33	ENSGT00940000153130.a.a.a.c.a	ENSGT00940000153073.b.b.b.b #31	ENSGT00940000153073.a ##31	ENSGT00940000163502 #37	ENSGT00940000159469.a.b.a
Rabbit	MODERN SPECIES	8	PSMB11 (ENSOCUG00000013112)	PSMB5 (ENSOCUG00000013109) #8	C14orf93 (ENSOCUG00000013097) #9	ENSOCUG00000001058 #10	HAUS4 (ENSOCUG00000013088) #11	PRMT5 (ENSOCUG00000002013) #12	RBM23 (ENSOCUG00000002006) #13	ENSOCUG00000001255 #14	LRP10 (ENSOCUG00000016380) #15	MRPL52 (ENSOCUG00000010240) #17	SLC7A7 (ENSOCUG00000000724) #18	OXA1L (ENSOCUG00000000720) #19	ENSOCUG00000026780 #20	ENSOCUG00000021544 #20	ABHD4 (ENSOCUG00000014277) #21	DAD1 (ENSOCUG00000014269) #22	ENSOCUG00000014258	ENSOCUG00000036041	ENSOCUG00000030264	ENSOCUG00000036453	ENSOCUG00000036554	ENSOCUG00000035549	ENSOCUG00000032804	TRDV3 (ENSOCUG00000025591)	ENSOCUG00000014250 #24	ENSOCUG00000033175 ##32	ENSOCUG00000039364	ENSOCUG00000024472 #25	ENSOCUG00000023049 #25	ENSOCUG00000038654	TRAV26-2 (ENSOCUG00000032620) #28
Pika	MODERN SPECIES	990					C14orf93 (ENSOPRG00000001155) #9	HAUS4 (ENSOPRG00000001137) #11	PRMT5 (ENSOPRG00000001113) #12	RBM23 (ENSOPRG00000001092) #13	REM2 (ENSOPRG00000001065) #14	LRP10 (ENSOPRG00000001050) #15	MMP14 (ENSOPRG00000001031) #16	MRPL52 (ENSOPRG00000001021) #17	SLC7A7 (ENSOPRG00000001007) #18	OXA1L (ENSOPRG00000000988) #19	ABHD4 (ENSOPRG00000000973) #21	DAD1 (ENSOPRG00000000950) #22