Gnathostomata	ANCESTRAL SPECIES																	ENSGT00390000003324 #22
Euteleostomi	ANCESTRAL SPECIES	355								ENSGT00520000055620.A	ENSGT00390000014495	ENSGT00940000175075	ENSGT00940000153649.B	ENSGT00940000154888	ENSGT00940000160062 #15	ENSGT00390000001141 #13	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT01050000244939.a.a.b.b	ENSGT00550000075121
Sarcopterygii	ANCESTRAL SPECIES	289			ENSGT00520000055620.A	ENSGT00390000014495	ENSGT00940000175075	ENSGT00940000153649.B	ENSGT00530000063506.B #20	ENSGT00940000160134 #19	ENSGT00390000005763 #18	ENSGT00940000157808 #17	ENSGT00940000160783 #16	ENSGT00940000160062 #15	ENSGT00390000001141 #13	ENSGT00940000160978 #11	ENSGT00390000016277.b #21	ENSGT00390000003324 #22
Tetrapoda	ANCESTRAL SPECIES	101	ENSGT00940000153649.B	ENSGT00940000153886.a.a	ENSGT00940000154888	ENSGT00550000075058	ENSGT00910000147451	ENSGT00530000063506.B #20	ENSGT00940000160134 #19	ENSGT00390000005763 #18	ENSGT00940000157808 #17	ENSGT00940000160783 #16	ENSGT00940000160062 #15	ENSGT00940000162546 #14	ENSGT00390000001141 #13	ENSGT00940000160978 #11	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147 #29	ENSGT00950000182968	ENSGT00940000153073	ENSGT00940000153130 #35
Amniota	ANCESTRAL SPECIES	37	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147 #29	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402	ENSGT00950000182966.C.b	ENSGT00950000182966.C.a	ENSGT00940000159445	ENSGT00940000160206
Mammalia	ANCESTRAL SPECIES	55	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147 #29	ENSGT00940000154455	ENSGT00940000153073	ENSGT00940000163052	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402
Theria	ANCESTRAL SPECIES	24	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT01030000235488	ENSGT00940000163052	ENSGT00940000153073.b.b.b	ENSGT00940000153130.a.a.b ##35	ENSGT00940000153073.a	ENSGT00940000163502	ENSGT00940000160183 #30	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a ##35	ENSGT00940000163224.a	ENSGT00940000162998.a	ENSGT00940000163224.b.b	ENSGT00940000153130.a.b #35
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00940000163906	ENSGT00940000154455.a.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000162998.b	ENSGT00940000163052	ENSGT00940000153073.b.b.b.b	ENSGT00940000163708	ENSGT00940000162524.B ##32	ENSGT00940000162840.A ##33	ENSGT00940000163717	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00940000161790 #37
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162998.a	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Primates	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01080000258109	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000162998.a
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01100000264510	ENSGT01070000257199
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b.`b.b #21	ENSGT00390000016277.b.ab ##21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000160147.a.n #28	ENSGT01050000248319	ENSGT01050000248383	ENSGT01050000245453	ENSGT00940000165951	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b.ab ##21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000160147.a.n #28	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b.ab ##21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01050000248319	ENSGT01050000248383	ENSGT01050000245453	ENSGT00960000192634	ENSGT01050000247358	ENSGT00980000200245	ENSGT01080000258109	ENSGT01050000248103	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000160147.a.n #28	ENSGT00920000149497	ENSGT00940000163224.a
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b.ab ##21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000160147.a.n #28	ENSGT00940000163224.a	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00510000047029.z.e.e.b.a.b #36
Pig-tailed macaque	MODERN SPECIES	287	ACIN1 (ENSMNEG00000035938) #7	CDH24 (ENSMNEG00000030948) #8	PSMB5 (ENSMNEG00000044213) #9	C14orf93 (ENSMNEG00000039045) #10	AJUBA (ENSMNEG00000033852) #11	HAUS4 (ENSMNEG00000040020) #12	PRMT5 (ENSMNEG00000035535) #13	RBM23 (ENSMNEG00000042442) #14	REM2 (ENSMNEG00000028496) #15	LRP10 (ENSMNEG00000039487) #16	MMP14 (ENSMNEG00000030751) #17	MRPL52 (ENSMNEG00000029791) #18	SLC7A7 (ENSMNEG00000043785) #19	OXA1L (ENSMNEG00000031247) #20	ENSMNEG00000033846 #21	DAD1 (ENSMNEG00000043891) #22	TRAC (ENSMNEG00000038635) #23	TRDV3 (ENSMNEG00000012962) #24	ENSMNEG00000024468 #25	TRDC (ENSMNEG00000020614) #26	TRAV41 (ENSMNEG00000038293) #27	TRAV38-2DV8 (ENSMNEG00000038225) #28	TRAV38-1 (ENSMNEG00000001485) #29	TRAV36DV7 (ENSMNEG00000004459) #30	TRAV34 (ENSMNEG00000038004) #31	TRAV26-2 (ENSMNEG00000038137) #32	TRAV30 (ENSMNEG00000002565) #33	ENSMNEG00000040982 #34	ENSMNEG00000020299 #35	ENSMNEG00000026014 #36	TRDV1 (ENSMNEG00000017026) #37
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00940000163505.a.a.a.b.b.b	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b.ab ##21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00980000203093	ENSGT01050000248383	ENSGT01050000245453	ENSGT01030000240289	ENSGT00960000192634	ENSGT01050000247358	ENSGT01010000227904	ENSGT01050000247663	ENSGT00980000200245	ENSGT01080000258109	ENSGT01050000248103	ENSGT01030000240329	ENSGT00730000111639 #24	ENSGT00550000075201 #26
Crab-eating macaque	MODERN SPECIES	17	PSMB5 (ENSMFAG00000040803) #9	PSMB11 (ENSMFAG00000010271)	ENSMFAG00000035808	C14orf93 (ENSMFAG00000001383) #10	AJUBA (ENSMFAG00000055086) #11	HAUS4 (ENSMFAG00000042332) #12	PRMT5 (ENSMFAG00000001324) #13	RBM23 (ENSMFAG00000037595) #14	REM2 (ENSMFAG00000032788) #15	LRP10 (ENSMFAG00000040578) #16	MMP14 (ENSMFAG00000038289) #17	MRPL52 (ENSMFAG00000000620) #18	SLC7A7 (ENSMFAG00000045060) #19	OXA1L (ENSMFAG00000015207) #20	ENSMFAG00000001529 ##21	DAD1 (ENSMFAG00000029604) #22	ENSMFAG00000059308	ENSMFAG00000062552	ENSMFAG00000055649	ENSMFAG00000065697	TRAJ18 (ENSMFAG00000052354)	ENSMFAG00000063063	ENSMFAG00000053881	ENSMFAG00000056354	ENSMFAG00000061803	ENSMFAG00000057943	ENSMFAG00000056938	ENSMFAG00000065126	ENSMFAG00000061224	ENSMFAG00000056895	ENSMFAG00000058245
Rhesus	MODERN SPECIES	17	PSMB5 (ENSMMUG00000006007) #9	PSMB11 (ENSMMUG00000006008)	ENSMMUG00000013585	C7H14orf93 (ENSMMUG00000008477) #10	AJUBA (ENSMMUG00000008475) #11	HAUS4 (ENSMMUG00000002668) #12	PRMT5 (ENSMMUG00000001035) #13	RBM23 (ENSMMUG00000018381) #14	REM2 (ENSMMUG00000016098) #15	LRP10 (ENSMMUG00000016100) #16	MMP14 (ENSMMUG00000013665) #17	MRPL52 (ENSMMUG00000013663) #18	SLC7A7 (ENSMMUG00000000413) #19	OXA1L (ENSMMUG00000000411) #20	ABHD4 (ENSMMUG00000009441) ##21	DAD1 (ENSMMUG00000000830) #22	ENSMMUG00000054763	ENSMMUG00000052151	ENSMMUG00000059713	ENSMMUG00000055037	TRAJ18 (ENSMMUG00000059574)	ENSMMUG00000065053	ENSMMUG00000060586	ENSMMUG00000062391	ENSMMUG00000058816	ENSMMUG00000057959	ENSMMUG00000056130	ENSMMUG00000060759	ENSMMUG00000049869	ENSMMUG00000055506	ENSMMUG00000057333
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b.ab ##21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT01050000248319	ENSGT01050000248383	ENSGT01050000245453	ENSGT00960000192634	ENSGT01050000247358	ENSGT00980000200245	ENSGT01080000258109	ENSGT01050000248103	ENSGT00730000111639 #24	ENSGT00940000165951	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a
Olive baboon	MODERN SPECIES	17	CDH24 (ENSPANG00000019643) #8	PSMB11 (ENSPANG00000017114)	ENSPANG00000015305 #9	C14orf93 (ENSPANG00000011161) #10	AJUBA (ENSPANG00000011738) #11	HAUS4 (ENSPANG00000015306) #12	PRMT5 (ENSPANG00000017607) #13	RBM23 (ENSPANG00000001324) #14	REM2 (ENSPANG00000026142) #15	LRP10 (ENSPANG00000003911) #16	MMP14 (ENSPANG00000023206) #17	MRPL52 (ENSPANG00000021102) #18	SLC7A7 (ENSPANG00000020911) #19	OXA1L (ENSPANG00000011741) #20	ABHD4 (ENSPANG00000003912) ##21	DAD1 (ENSPANG00000022399) #22	TRAC (ENSPANG00000022567) #23	ENSPANG00000046666	ENSPANG00000040216	ENSPANG00000049551	TRAJ18 (ENSPANG00000043807)	ENSPANG00000038254	ENSPANG00000040179	ENSPANG00000039002	ENSPANG00000037419	ENSPANG00000042807	ENSPANG00000046834	ENSPANG00000040954	ENSPANG00000050368	ENSPANG00000046979	ENSPANG00000046067
Cercopithecinae_d	ANCESTRAL SPECIES	109	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b.ab ##21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00940000170243	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00510000047029.z.e.e.b.a.b #36	ENSGT00940000162524.B.f ##32
Drill	MODERN SPECIES	1047	CDH24 (ENSMLEG00000033931) #8	PSMB11 (ENSMLEG00000013212)	PSMB5 (ENSMLEG00000042905) #9	C14orf93 (ENSMLEG00000040701) #10	AJUBA (ENSMLEG00000001372) #11	ENSMLEG00000044268 #12	PRMT5 (ENSMLEG00000035801) #13	RBM23 (ENSMLEG00000039954) #14	REM2 (ENSMLEG00000032118) #15	LRP10 (ENSMLEG00000043127) #16	MMP14 (ENSMLEG00000000094) #17	MRPL52 (ENSMLEG00000035746) #18	SLC7A7 (ENSMLEG00000014136) #19	OXA1L (ENSMLEG00000029808) #20	ENSMLEG00000043691 ##21	DAD1 (ENSMLEG00000041482) #22	TRAC (ENSMLEG00000039915) #23	TRDV3 (ENSMLEG00000025676) #24	ENSMLEG00000024199	TRAV38-2DV8 (ENSMLEG00000021755) #28	TRAV38-1 (ENSMLEG00000025157) #29
Sooty mangabey	MODERN SPECIES	288	CDH24 (ENSCATG00000011377) #8	PSMB11 (ENSCATG00000010453)	PSMB5 (ENSCATG00000044133) #9	C14orf93 (ENSCATG00000044847) #10	AJUBA (ENSCATG00000032482) #11	ENSCATG00000041460 #12	PRMT5 (ENSCATG00000014579) #13	RBM23 (ENSCATG00000017832) #14	REM2 (ENSCATG00000012864) #15	LRP10 (ENSCATG00000041990) #16	MMP14 (ENSCATG00000003284) #17	MRPL52 (ENSCATG00000030157) #18	ENSCATG00000030947 #19	OXA1L (ENSCATG00000009400) #20	ENSCATG00000022305 ##21	DAD1 (ENSCATG00000016897) #22	TRAC (ENSCATG00000037406) #23	TRDV3 (ENSCATG00000019903) #24	ENSCATG00000019120	TRDC (ENSCATG00000018487) #26	TRAV41 (ENSCATG00000019226) #27	TRAV38-2DV8 (ENSCATG00000019859) #28	TRAV38-1 (ENSCATG00000020630) #29	TRAV36DV7 (ENSCATG00000022068) #30	TRAV34 (ENSCATG00000022605) #31	TRAV26-2 (ENSCATG00000023223) #32	TRAV30 (ENSCATG00000023212) #33	ENSCATG00000023532 #35
Vervet Monkey	MODERN SPECIES	21	CDH24 (ENSCSAG00000016106) #8	PSMB11 (ENSCSAG00000019676)	PSMB5 (ENSCSAG00000016112) #9	C14orf93 (ENSCSAG00000016115) #10	AJUBA (ENSCSAG00000016121) #11	HAUS4 (ENSCSAG00000016126) #12	PRMT5 (ENSCSAG00000016179) #13	RBM23 (ENSCSAG00000016213) #14	REM2 (ENSCSAG00000016222) #15	LRP10 (ENSCSAG00000016235) #16	MMP14 (ENSCSAG00000016239) #17	MRPL52 (ENSCSAG00000016242) #18	SLC7A7 (ENSCSAG00000016247) #19	OXA1L (ENSCSAG00000016254) #20	ABHD4 (ENSCSAG00000016272) ##21	DAD1 (ENSCSAG00000016279) #22	ENSCSAG00000016283	TRAC (ENSCSAG00000016292) #23	TRAJ2 (ENSCSAG00000019675)	ENSCSAG00000019674	ENSCSAG00000019673	ENSCSAG00000019672	ENSCSAG00000019671	ENSCSAG00000019670	ENSCSAG00000019669	TRAJ28 (ENSCSAG00000019668)	ENSCSAG00000019667	ENSCSAG00000019666	TRAJ42 (ENSCSAG00000019665)	ENSCSAG00000000333	ENSCSAG00000000334
Rhinopithecus	ANCESTRAL SPECIES	128	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634.g #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b.`b.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00940000170243
Golden snub-nosed monkey	MODERN SPECIES	2083	PSMB11 (ENSRROG00000025908)	PSMB5 (ENSRROG00000034076) #9	C14orf93 (ENSRROG00000007559) #10	AJUBA (ENSRROG00000040110) #11	ENSRROG00000044756 #12	PRMT5 (ENSRROG00000028985) #13	RBM23 (ENSRROG00000044026) #14	REM2 (ENSRROG00000000769) #15	LRP10 (ENSRROG00000045101) #16	MMP14 (ENSRROG00000032097) #17	MRPL52 (ENSRROG00000038692) #18	SLC7A7 (ENSRROG00000036587) #19	OXA1L (ENSRROG00000031458) #20	ENSRROG00000003728	ENSRROG00000030064 #21	DAD1 (ENSRROG00000032400) #22	TRAC (ENSRROG00000044326) #23	TRDV3 (ENSRROG00000007769) #24	ENSRROG00000026774
Black snub-nosed monkey	MODERN SPECIES	2556	ENSRBIG00000038153	ENSRBIG00000035585 #9	C14orf93 (ENSRBIG00000006042) #10	AJUBA (ENSRBIG00000039769) #11	ENSRBIG00000028589 #12	PRMT5 (ENSRBIG00000033709) #13	RBM23 (ENSRBIG00000039276) #14	REM2 (ENSRBIG00000031050) #15	LRP10 (ENSRBIG00000030290) #16	MMP14 (ENSRBIG00000041147) #17	MRPL52 (ENSRBIG00000016834) #18	SLC7A7 (ENSRBIG00000036121) #19	OXA1L (ENSRBIG00000043882) #20	ENSRBIG00000005098	ENSRBIG00000030411 #21	DAD1 (ENSRBIG00000018620) #22	TRAC (ENSRBIG00000041666) #23	TRDV3 (ENSRBIG00000001337) #24	ENSRBIG00000022469	TRAV41 (ENSRBIG00000021879) #27
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35
Gibbon	MODERN SPECIES	14	CDH24 (ENSNLEG00000014900) #8	PSMB5 (ENSNLEG00000034685) #9	C14orf93 (ENSNLEG00000014883) #10	ENSNLEG00000014877 #11	HAUS4 (ENSNLEG00000014853) #12	PRMT5 (ENSNLEG00000014810) #13	RBM23 (ENSNLEG00000014792) #14	REM2 (ENSNLEG00000014788) #15	LRP10 (ENSNLEG00000014773) #16	MMP14 (ENSNLEG00000014762) #17	SLC7A7 (ENSNLEG00000014725) #19	OXA1L (ENSNLEG00000014684) #20	ENSNLEG00000028419	ENSNLEG00000034695	ABHD4 (ENSNLEG00000035873) #21	DAD1 (ENSNLEG00000014666) #22	ENSNLEG00000031059 #23	TRDV3 (ENSNLEG00000014664) #24	ENSNLEG00000027680	ENSNLEG00000029590 #26	ENSNLEG00000032780 #27	ENSNLEG00000033140	ENSNLEG00000035066	TRAV38-2DV8 (ENSNLEG00000030966) #28	ENSNLEG00000031642 #29	ENSNLEG00000033391 #30	ENSNLEG00000033545 ##27	ENSNLEG00000035290 #31	ENSNLEG00000034603 #32	ENSNLEG00000030593 #33	ENSNLEG00000029757 ##35
Hominidae	ANCESTRAL SPECIES	14	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35
Gorilla	MODERN SPECIES	5	CDH24 (ENSGGOG00000007398) #8	PSMB11 (ENSGGOG00000007392)	PSMB5 (ENSGGOG00000026856) #9	C14orf93 (ENSGGOG00000014548) #10	AJUBA (ENSGGOG00000014539) #11	HAUS4 (ENSGGOG00000007504) #12	PRMT5 (ENSGGOG00000010839) #13	RBM23 (ENSGGOG00000015707) #14	REM2 (ENSGGOG00000015704) #15	LRP10 (ENSGGOG00000015695) #16	MMP14 (ENSGGOG00000001650) #17	MRPL52 (ENSGGOG00000001649) #18	SLC7A7 (ENSGGOG00000003694) #19	OXA1L (ENSGGOG00000003688) #20	ABHD4 (ENSGGOG00000007368) #21	DAD1 (ENSGGOG00000028137) #22	TRAC (ENSGGOG00000024280) #23	ENSGGOG00000022509	TRDV3 (ENSGGOG00000028378) #24	ENSGGOG00000037441	ENSGGOG00000043281 #26	TRAV41 (ENSGGOG00000041745) #27	ENSGGOG00000036346	TRAV38-2DV8 (ENSGGOG00000036359) #28	TRAV38-1 (ENSGGOG00000039562) #29	TRAV36DV7 (ENSGGOG00000037745) #30	ENSGGOG00000039312 ##35	ENSGGOG00000039281 #32	ENSGGOG00000037871 #33	TRAV29DV5 (ENSGGOG00000038663) ##35	ENSGGOG00000036547 #35
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35
Human	MODERN SPECIES	5	PSMB5 (ENSG00000100804) #9	C14orf93 (ENSG00000100802) #10	AJUBA (ENSG00000129474) #11	ENSG00000259132	HAUS4 (ENSG00000092036) #12	PRMT5 (ENSG00000100462) #13	RBM23 (ENSG00000100461) #14	REM2 (ENSG00000139890) #15	LRP10 (ENSG00000197324) #16	MMP14 (ENSG00000157227) #17	MRPL52 (ENSG00000172590) #18	SLC7A7 (ENSG00000155465) #19	OXA1L (ENSG00000155463) #20	OR6J1 (ENSG00000255804)	ABHD4 (ENSG00000100439) #21	DAD1 (ENSG00000129562) #22	TRAC (ENSG00000277734) #23	TRAJ1 (ENSG00000211888)	TRAJ2 (ENSG00000211887)	TRAJ3 (ENSG00000211886)	TRAJ4 (ENSG00000211885)	TRAJ5 (ENSG00000211884)	TRAJ6 (ENSG00000211883)	TRAJ7 (ENSG00000211882)	TRAJ9 (ENSG00000211880)	TRAJ10 (ENSG00000211879)	TRAJ11 (ENSG00000211878)	TRAJ12 (ENSG00000211877)	TRAJ13 (ENSG00000211876)	TRAJ14 (ENSG00000211875)	TRAJ16 (ENSG00000211873)
Pan	ANCESTRAL SPECIES	8	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00940000173064	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000160147.a.n #28	ENSGT00940000160147.a.m #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.b.j
Chimpanzee	MODERN SPECIES	5	ACIN1 (ENSPTRG00000006159) #7	CDH24 (ENSPTRG00000006158) #8	PSMB5 (ENSPTRG00000006156) #9	C14H14orf93 (ENSPTRG00000006155) #10	AJUBA (ENSPTRG00000006154) #11	HAUS4 (ENSPTRG00000006153) #12	PRMT5 (ENSPTRG00000006152) #13	RBM23 (ENSPTRG00000006151) #14	REM2 (ENSPTRG00000006150) #15	LRP10 (ENSPTRG00000006149) #16	MMP14 (ENSPTRG00000006148) #17	MRPL52 (ENSPTRG00000006147) #18	SLC7A7 (ENSPTRG00000006146) #19	OXA1L (ENSPTRG00000006145) #20	ABHD4 (ENSPTRG00000006143) #21	DAD1 (ENSPTRG00000006141) #22	TRAC (ENSPTRG00000044038) #23	TRDV3 (ENSPTRG00000050301) #24	ENSPTRG00000048464	ENSPTRG00000048936 #26	TRAV41 (ENSPTRG00000046333) #27	TRAV38-2DV8 (ENSPTRG00000042891) #28	TRAV38-1 (ENSPTRG00000046310) #29	ENSPTRG00000047747 #30	ENSPTRG00000044743 ##27	TRAV26-2 (ENSPTRG00000044511) #32	ENSPTRG00000046695 #33	ENSPTRG00000049224 ##35	ENSPTRG00000044789 #35	ENSPTRG00000043764	ENSPTRG00000049386 ##32
Bonobo	MODERN SPECIES	5	CDH24 (ENSPPAG00000035182) #8	PSMB11 (ENSPPAG00000005580)	PSMB5 (ENSPPAG00000043004) #9	C14orf93 (ENSPPAG00000036818) #10	AJUBA (ENSPPAG00000031512) #11	HAUS4 (ENSPPAG00000040161) #12	PRMT5 (ENSPPAG00000032055) #13	RBM23 (ENSPPAG00000037922) #14	REM2 (ENSPPAG00000041292) #15	LRP10 (ENSPPAG00000029431) #16	MMP14 (ENSPPAG00000037241) #17	MRPL52 (ENSPPAG00000033265) #18	SLC7A7 (ENSPPAG00000036954) #19	OXA1L (ENSPPAG00000034085) #20	ABHD4 (ENSPPAG00000030993) #21	DAD1 (ENSPPAG00000026093) #22	TRAC (ENSPPAG00000037107) #23	TRDV3 (ENSPPAG00000011053) #24	ENSPPAG00000009192	ENSPPAG00000014917 #26	TRAV41 (ENSPPAG00000033024) #27	ENSPPAG00000033074	TRAV38-2DV8 (ENSPPAG00000032924) #28	ENSPPAG00000040762 #29	TRAV36DV7 (ENSPPAG00000032956) #30	ENSPPAG00000032939 ##27	TRAV26-2 (ENSPPAG00000032959) #32	ENSPPAG00000033355 #37	ENSPPAG00000033053 ##35	ENSPPAG00000034991 ##27	TRAV21 (ENSPPAG00000032865)
Orangutan	MODERN SPECIES	5	ENSPPYG00000005655	C14H14orf93 (ENSPPYG00000005653) #10	AJUBA (ENSPPYG00000005652) #11	HAUS4 (ENSPPYG00000005651) #12	PRMT5 (ENSPPYG00000005650) #13	RBM23 (ENSPPYG00000005649) #14	REM2 (ENSPPYG00000005648) #15	LRP10 (ENSPPYG00000005647) #16	MMP14 (ENSPPYG00000005646) #17	ENSPPYG00000005645 #18	SLC7A7 (ENSPPYG00000005643) #19	OXA1L (ENSPPYG00000005642) #20	ENSPPYG00000019928	OR6J1 (ENSPPYG00000005640)	ABHD4 (ENSPPYG00000005639) #21	DAD1 (ENSPPYG00000005638) #22	ENSPPYG00000031404	TRAC (ENSPPYG00000005637) #23	ENSPPYG00000033635	ENSPPYG00000034775	ENSPPYG00000040530	TRAJ18 (ENSPPYG00000032749)	ENSPPYG00000040270	ENSPPYG00000040330	ENSPPYG00000041342	ENSPPYG00000034396	ENSPPYG00000035246	ENSPPYG00000035728	ENSPPYG00000029962	ENSPPYG00000031151	ENSPPYG00000030890
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546.a #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n.b #28	ENSGT00940000160147.a.m #29	ENSGT00940000153130.a.b.b ##35	ENSGT00940000160147.a.n.a #28	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C.a ##27	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000162840.D #33	ENSGT00960000188395
Mas night monkey	MODERN SPECIES	819	CDH24 (ENSANAG00000023080) #8	PSMB5 (ENSANAG00000029997) #9	C14orf93 (ENSANAG00000015389) #10	AJUBA (ENSANAG00000032654) #11	HAUS4 (ENSANAG00000037413) #12	PRMT5 (ENSANAG00000035246) #13	ENSANAG00000031466 #14	REM2 (ENSANAG00000024097) #15	LRP10 (ENSANAG00000029303) #16	MMP14 (ENSANAG00000021316) #17	MRPL52 (ENSANAG00000037074) #18	SLC7A7 (ENSANAG00000036104) #19	OXA1L (ENSANAG00000034299) #20	ENSANAG00000014624	ABHD4 (ENSANAG00000023988) #21	DAD1 (ENSANAG00000029416) #22	TRAC (ENSANAG00000024027) #23	TRDC (ENSANAG00000013027) #26	TRAV38-2DV8 (ENSANAG00000013358) #28	TRAV38-1 (ENSANAG00000013268) #29	TRAV34 (ENSANAG00000011361) #31	TRAV26-2 (ENSANAG00000011824) #32	TRAV30 (ENSANAG00000013331) #33	ENSANAG00000024325	TRAV8-7 (ENSANAG00000029257)	ENSANAG00000011148 ##27	TRAV24 (ENSANAG00000013613)	ENSANAG00000021962 ##27	TRAV21 (ENSANAG00000010177)	TRAV20 (ENSANAG00000016117) ##30	TRAV18 (ENSANAG00000012778)
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546.a #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n.b #28	ENSGT00940000153130.a.b.b ##35	ENSGT00940000160147.a.n.a #28	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C.a ##27	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000162998.a
Marmoset	MODERN SPECIES	1	C14orf93 (ENSCJAG00000008320) #10	AJUBA (ENSCJAG00000008376) #11	ENSCJAG00000008389 #12	ENSCJAG00000008409 #13	RBM23 (ENSCJAG00000008482) #14	REM2 (ENSCJAG00000037144) #15	LRP10 (ENSCJAG00000008522) #16	MMP14 (ENSCJAG00000008538) #17	MRPL52 (ENSCJAG00000035615) #18	SLC7A7 (ENSCJAG00000008592) #19	ENSCJAG00000082162	ENSCJAG00000008664 #20	ENSCJAG00000085751	ABHD4 (ENSCJAG00000008681) #21	ENSCJAG00000047195	DAD1 (ENSCJAG00000074739) #22	TRAC (ENSCJAG00000008714) #23	ENSCJAG00000045165	ENSCJAG00000041313	ENSCJAG00000046505	ENSCJAG00000039022	ENSCJAG00000046331	ENSCJAG00000046757	ENSCJAG00000045350	ENSCJAG00000039105	ENSCJAG00000038280	ENSCJAG00000042576	ENSCJAG00000045740	ENSCJAG00000047190	TRDC (ENSCJAG00000085557) #26	TRDV2 (ENSCJAG00000042880)
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546.a #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000163224.a	ENSGT00940000160147.a.n.b #28	ENSGT00940000160147.a.n.a #28	ENSGT00940000160183.d.a #30	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000162998.a	ENSGT00900000140957.C.b ##27	ENSGT00940000163717	ENSGT00900000140957.A.a.b ##27
Bolivian squirrel monkey	MODERN SPECIES	52	PSMB11 (ENSSBOG00000008921)	PSMB5 (ENSSBOG00000030520) #9	C14orf93 (ENSSBOG00000018297) #10	AJUBA (ENSSBOG00000028963) #11	HAUS4 (ENSSBOG00000023415) #12	PRMT5 (ENSSBOG00000036125) #13	ENSSBOG00000023037 #14	REM2 (ENSSBOG00000023345) #15	LRP10 (ENSSBOG00000033889) #16	MMP14 (ENSSBOG00000026846) #17	MRPL52 (ENSSBOG00000022662) #18	SLC7A7 (ENSSBOG00000032553) #19	OXA1L (ENSSBOG00000028461) #20	ENSSBOG00000005105	ABHD4 (ENSSBOG00000034998) #21	DAD1 (ENSSBOG00000020528) #22	ENSSBOG00000033224 #23	TRDC (ENSSBOG00000019484) #26	TRAV41 (ENSSBOG00000010905) #27	ENSSBOG00000004003 #28	ENSSBOG00000019119 #28	TRAV34 (ENSSBOG00000018340) #31	TRAV26-2 (ENSSBOG00000018946) #32	ENSSBOG00000009785 #35	TRAV26-1 (ENSSBOG00000018975)	ENSSBOG00000019528	TRAV22 (ENSSBOG00000027440) ##27	TRAV21 (ENSSBOG00000008898)	TRAV12-3 (ENSSBOG00000007472) ##35	TRAV8-3 (ENSSBOG00000035186)	TRAV12-1 (ENSSBOG00000019726) ##35
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	196	CTSV (ENSCCAG00000030717)	FAM240B (ENSCCAG00000037201)	ENSCCAG00000027284	ENSCCAG00000037426	ENSCCAG00000023018	ENSCCAG00000021897	ENSCCAG00000036180	ENSCCAG00000025019	ENSCCAG00000032829	ENSCCAG00000031010	PRXL2C (ENSCCAG00000021330)	ENSCCAG00000030771	ENSCCAG00000004738	ENSCCAG00000026671	HABP4 (ENSCCAG00000029535)	ENSCCAG00000025778 #22	ZNF367 (ENSCCAG00000011083)	SLC35D2 (ENSCCAG00000019726)	HSD17B3 (ENSCCAG00000032712)	ENSCCAG00000026980	PTCH1 (ENSCCAG00000021603)	ENSCCAG00000029017	ENSCCAG00000034109	FANCC (ENSCCAG00000026638)	AOPEP (ENSCCAG00000029936)	FBP1 (ENSCCAG00000005125)	FBP2 (ENSCCAG00000022182)
Capuchin	MODERN SPECIES	170	CDH24 (ENSCCAG00000029972) #8	ENSCCAG00000032430 #9	C14orf93 (ENSCCAG00000009885) #10	AJUBA (ENSCCAG00000035773) #11	HAUS4 (ENSCCAG00000033831) #12	PRMT5 (ENSCCAG00000034980) #13	ENSCCAG00000025114 #14	REM2 (ENSCCAG00000034864) #15	LRP10 (ENSCCAG00000032914) #16	MMP14 (ENSCCAG00000023613) #17	MRPL52 (ENSCCAG00000035013) #18	SLC7A7 (ENSCCAG00000031142) #19	OXA1L (ENSCCAG00000036442) #20	ABHD4 (ENSCCAG00000029397) #21	ENSCCAG00000035365 #22	ENSCCAG00000035123 #22	TRAC (ENSCCAG00000038072) #23	TRDC (ENSCCAG00000033911) #26	TRAV41 (ENSCCAG00000028015) #27	TRAV40 (ENSCCAG00000026707)	TRAV39 (ENSCCAG00000020589)	ENSCCAG00000018642 #28	ENSCCAG00000017661 #28	TRAV36DV7 (ENSCCAG00000013691) #30	TRAV34 (ENSCCAG00000013656) #31	TRAV26-2 (ENSCCAG00000018936) #32	ENSCCAG00000016540 #35	TRAV26-1 (ENSCCAG00000035723)	ENSCCAG00000010783 ##27	TRAV24 (ENSCCAG00000020236)	TRAV22 (ENSCCAG00000028395) ##27
Capuchin	MODERN SPECIES	170	TRAV24 (ENSCCAG00000020236)	ENSCCAG00000010783 ##27	TRAV26-1 (ENSCCAG00000035723)	ENSCCAG00000016540 #35	TRAV26-2 (ENSCCAG00000018936) #32	TRAV34 (ENSCCAG00000013656) #31	TRAV36DV7 (ENSCCAG00000013691) #30	ENSCCAG00000017661 #28	ENSCCAG00000018642 #28	TRAV39 (ENSCCAG00000020589)	TRAV40 (ENSCCAG00000026707)	TRAV41 (ENSCCAG00000028015) #27	TRDC (ENSCCAG00000033911) #26	TRAC (ENSCCAG00000038072) #23	ENSCCAG00000035123 #22	ENSCCAG00000035365 #22	ABHD4 (ENSCCAG00000029397) #21	OXA1L (ENSCCAG00000036442) #20	SLC7A7 (ENSCCAG00000031142) #19	MRPL52 (ENSCCAG00000035013) #18	MMP14 (ENSCCAG00000023613) #17	LRP10 (ENSCCAG00000032914) #16	REM2 (ENSCCAG00000034864) #15	ENSCCAG00000025114 #14	PRMT5 (ENSCCAG00000034980) #13	HAUS4 (ENSCCAG00000033831) #12	AJUBA (ENSCCAG00000035773) #11	C14orf93 (ENSCCAG00000009885) #10	ENSCCAG00000032430 #9	CDH24 (ENSCCAG00000029972) #8	ACIN1 (ENSCCAG00000029776) #7
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5703					HAUS4 (ENSTSYG00000012825) #12	PRMT5 (ENSTSYG00000026964) #13	RBM23 (ENSTSYG00000014755) #14	REM2 (ENSTSYG00000006124) #15	LRP10 (ENSTSYG00000006119) #16	MMP14 (ENSTSYG00000001822) #17	MRPL52 (ENSTSYG00000028483) #18	SLC7A7 (ENSTSYG00000014508) #19	OXA1L (ENSTSYG00000014505) #20	ENSTSYG00000026842	ABHD4 (ENSTSYG00000014128) #21	DAD1 (ENSTSYG00000013309) #22	ENSTSYG00000033139
Tarsier	MODERN SPECIES	6554																ENSTSYG00000030192 #22
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #26	ENSGT00940000160147.a.p #29	ENSGT00940000160183.d.a #30	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00900000140957.A.a.b ##27	ENSGT00940000163708	ENSGT00940000153073.a	ENSGT00940000163052	ENSGT00940000163502	ENSGT00940000153073.b.b.b.b	ENSGT00940000153130.a.a.b ##35
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000160147.a.p #29	ENSGT00940000160183.d.a #30	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00900000140957.A.a.b ##27	ENSGT00940000163708	ENSGT00940000163052	ENSGT00940000153073.a	ENSGT00940000163507	ENSGT00900000140957.A.a.a ##27	ENSGT00940000153073.b.b.b.a.d.a	ENSGT00940000153073.b.b.b.b
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000163507	ENSGT00900000140957.A.a.a ##27	ENSGT00940000153073.b.b.b.a.d.a	ENSGT00940000153073.b.b.b.b	ENSGT00940000153130.a.a.b ##35	ENSGT00940000154455.a.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.c	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a
Coquerels sifaka	MODERN SPECIES	424	CDH24 (ENSPCOG00000003143) #8	PSMB5 (ENSPCOG00000021862) #9	C14orf93 (ENSPCOG00000010379) #10	AJUBA (ENSPCOG00000016135) #11	HAUS4 (ENSPCOG00000016850) #12	PRMT5 (ENSPCOG00000017358) #13	RBM23 (ENSPCOG00000018564) #14	REM2 (ENSPCOG00000025110) #15	LRP10 (ENSPCOG00000020765) #16	MMP14 (ENSPCOG00000020895) #17	MRPL52 (ENSPCOG00000027612) #18	SLC7A7 (ENSPCOG00000015863) #19	OXA1L (ENSPCOG00000024151) #20	ENSPCOG00000012865	ABHD4 (ENSPCOG00000000567) #21	DAD1 (ENSPCOG00000012877) #22	ENSPCOG00000015924	TRAV18 (ENSPCOG00000013294)	TRAV9-1 (ENSPCOG00000009429)	TRAV8-3 (ENSPCOG00000013652)	TRAV3 (ENSPCOG00000013386)	TRAV2 (ENSPCOG00000013662)	OR10G2 (ENSPCOG00000008398)	SALL2 (ENSPCOG00000017266)	METTL3 (ENSPCOG00000024390)	TOX4 (ENSPCOG00000021038)	ENSPCOG00000026999	CHD8 (ENSPCOG00000014628)	SUPT16H (ENSPCOG00000006812)	RPGRIP1 (ENSPCOG00000024495)	ENSPCOG00000022866
Greater bamboo lemur	MODERN SPECIES	751	PSMB5 (ENSPSMG00000006294) #9	C14orf93 (ENSPSMG00000006267) #10	AJUBA (ENSPSMG00000006254) #11	HAUS4 (ENSPSMG00000006188) #12	PRMT5 (ENSPSMG00000005651) #13	RBM23 (ENSPSMG00000005248) #14	REM2 (ENSPSMG00000005112) #15	LRP10 (ENSPSMG00000005091) #16	MMP14 (ENSPSMG00000005056) #17	MRPL52 (ENSPSMG00000005045) #18	SLC7A7 (ENSPSMG00000005010) #19	OXA1L (ENSPSMG00000004934) #20	ENSPSMG00000004892	OR6J1 (ENSPSMG00000004890)	ABHD4 (ENSPSMG00000004876) #21	DAD1 (ENSPSMG00000004854) #22	ENSPSMG00000004844 #23	ENSPSMG00000004832	ENSPSMG00000004823	ENSPSMG00000004818	ENSPSMG00000004812	ENSPSMG00000004804	ENSPSMG00000004793	ENSPSMG00000004788	ENSPSMG00000004776	ENSPSMG00000004774	ENSPSMG00000004769
Mouse lemur	MODERN SPECIES	22	CDH24 (ENSMICG00000002564) #8	PSMB5 (ENSMICG00000035988) #9	C14orf93 (ENSMICG00000009205) #10	AJUBA (ENSMICG00000009193) #11	HAUS4 (ENSMICG00000030177) #12	PRMT5 (ENSMICG00000015023) #13	RBM23 (ENSMICG00000006364) #14	REM2 (ENSMICG00000047327) #15	LRP10 (ENSMICG00000006358) #16	MMP14 (ENSMICG00000006204) #17	MRPL52 (ENSMICG00000006201) #18	SLC7A7 (ENSMICG00000036164) #19	OXA1L (ENSMICG00000001403) #20	ENSMICG00000028761	ABHD4 (ENSMICG00000012697) #21	DAD1 (ENSMICG00000012690) #22	ENSMICG00000045157 #29	TRAV34 (ENSMICG00000047656) #31	ENSMICG00000048028	TRAV21 (ENSMICG00000042869)	ENSMICG00000036456	TRAV9-2 (ENSMICG00000047919)	ENSMICG00000044028	TRAV9-1 (ENSMICG00000045305)	ENSMICG00000026679	TRAV3 (ENSMICG00000041451)	OR10G3 (ENSMICG00000045513)	SALL2 (ENSMICG00000046438)	METTL3 (ENSMICG00000015037)	TOX4 (ENSMICG00000014965)	RAB2B (ENSMICG00000014937)
Bushbaby	MODERN SPECIES	340	PSMB11 (ENSOGAG00000034070)	PSMB5 (ENSOGAG00000005107) #9	C14orf93 (ENSOGAG00000005106) #10	AJUBA (ENSOGAG00000034052) #11	HAUS4 (ENSOGAG00000000586) #12	PRMT5 (ENSOGAG00000005094) #13	RBM23 (ENSOGAG00000014794) #14	REM2 (ENSOGAG00000027026) #15	LRP10 (ENSOGAG00000005090) #16	MMP14 (ENSOGAG00000012736) #17	SLC7A7 (ENSOGAG00000000632) #19	OXA1L (ENSOGAG00000000631) #20	ENSOGAG00000024512	OR6J1 (ENSOGAG00000006226)	ABHD4 (ENSOGAG00000006223) #21	DAD1 (ENSOGAG00000006219) #22	TRAC (ENSOGAG00000027202) #23	TRDC (ENSOGAG00000006210) #26	ENSOGAG00000029709 #29
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35
Tree shrew	MODERN SPECIES	1270																DAD1 (ENSTBEG00000009680) #22	ENSTBEG00000017526 #23	ENSTBEG00000017339 #37
Glires	ANCESTRAL SPECIES	12	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000154455.a.a.g	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000161790 #37
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000153130.a.b.b ##35	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01080000258996	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212
Naked mole-rat female	MODERN SPECIES	11	PSMB5 (ENSHGLG00000003365) #9	PSMB11 (ENSHGLG00000020072)	CDH24 (ENSHGLG00000003051) #8	ENSHGLG00000018997 #7	C14orf119 (ENSHGLG00000011980)	ENSHGLG00000049606 #7	CIROP (ENSHGLG00000035340)	CEBPE (ENSHGLG00000011620)	ENSHGLG00000011086	ENSHGLG00000040599	ENSHGLG00000050001	ENSHGLG00000009022	ENSHGLG00000043000	ENSHGLG00000044684	ENSHGLG00000008034 #21	DAD1 (ENSHGLG00000048015) #22	ENSHGLG00000006305	ENSHGLG00000045633	ENSHGLG00000034585	ENSHGLG00000041943 #24	TRDC (ENSHGLG00000006155) #26	ENSHGLG00000048077	ENSHGLG00000048176	ENSHGLG00000047236 #29	ENSHGLG00000034626 ##35	ENSHGLG00000036470	ENSHGLG00000035303 ##27	ENSHGLG00000042675	ENSHGLG00000035335	ENSHGLG00000032838	ENSHGLG00000046197 ##27
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00550000075201 #26	ENSGT00940000153073.b.b.b.b.g	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	13	CDH24 (ENSCPOG00000013121) #8	PSMB11 (ENSCPOG00000014048)	PSMB5 (ENSCPOG00000014047) #9	C14orf93 (ENSCPOG00000014044) #10	AJUBA (ENSCPOG00000023158) #11	HAUS4 (ENSCPOG00000003331) #12	PRMT5 (ENSCPOG00000014038) #13	REM2 (ENSCPOG00000024124) #15	LRP10 (ENSCPOG00000014495) #16	MMP14 (ENSCPOG00000024551) #17	MRPL52 (ENSCPOG00000009474) #18	SLC7A7 (ENSCPOG00000005730) #19	OXA1L (ENSCPOG00000022098) #20	ENSCPOG00000032843	ABHD4 (ENSCPOG00000000850) #21	ENSCPOG00000031141 #22	ENSCPOG00000034500	TRDC (ENSCPOG00000000844) #26	ENSCPOG00000033000	ENSCPOG00000040263	OR4E2 (ENSCPOG00000026054)	OR10G2 (ENSCPOG00000039240)	SALL2 (ENSCPOG00000040220)	METTL3 (ENSCPOG00000002545)	TOX4 (ENSCPOG00000025504)	RAB2B (ENSCPOG00000026575)	CHD8 (ENSCPOG00000002538)	SUPT16H (ENSCPOG00000002534)	RPGRIP1 (ENSCPOG00000002526)	ENSCPOG00000001474	ENSCPOG00000035385
Guinea pig	MODERN SPECIES	81	KIF3A (ENSCPOG00000011249)	ENSCPOG00000031420	IL13 (ENSCPOG00000027078)	RAD50 (ENSCPOG00000002226)	IL5 (ENSCPOG00000004840)	IRF1 (ENSCPOG00000004848)	SLC22A5 (ENSCPOG00000005459)	SLC22A4 (ENSCPOG00000004913)	PDLIM4 (ENSCPOG00000027520)	P4HA2 (ENSCPOG00000008411)	CSF2 (ENSCPOG00000014074)	ACSL6 (ENSCPOG00000012748)	FNIP1 (ENSCPOG00000030775)	RAPGEF6 (ENSCPOG00000010242)	CDC42SE2 (ENSCPOG00000039035)	ENSCPOG00000000849 #22	LYRM7 (ENSCPOG00000039454)	HINT1 (ENSCPOG00000023046)	GPX3 (ENSCPOG00000006611)	TNIP1 (ENSCPOG00000006613)	ANXA6 (ENSCPOG00000005272)	CCDC69 (ENSCPOG00000031762)	GM2A (ENSCPOG00000040130)	SLC36A3 (ENSCPOG00000009677)	SLC36A2 (ENSCPOG00000008306)	ENSCPOG00000034918	ENSCPOG00000036108	ENSCPOG00000030030	ENSCPOG00000037129	ENSCPOG00000039847	ENSCPOG00000037647
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00550000075201 #26	ENSGT00940000153073.b.b.b.b.g
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	317	ENSODEG00000001783	PSMB5 (ENSODEG00000001779) #9	C14orf93 (ENSODEG00000001756) #10	ENSODEG00000001742 #11	HAUS4 (ENSODEG00000001722) #12	PRMT5 (ENSODEG00000001672) #13	REM2 (ENSODEG00000001644) #15	LRP10 (ENSODEG00000001621) #16	MMP14 (ENSODEG00000001611) #17	MRPL52 (ENSODEG00000001600) #18	SLC7A7 (ENSODEG00000001562) #19	OXA1L (ENSODEG00000001527) #20	ENSODEG00000018736	ENSODEG00000001719	ABHD4 (ENSODEG00000001709) #21	ENSODEG00000001700 #22	ENSODEG00000001687
Degu	MODERN SPECIES	96					ENSODEG00000009729	GRIPAP1 (ENSODEG00000009943)	KCND1 (ENSODEG00000010342)	OTUD5 (ENSODEG00000009050)	PIM2 (ENSODEG00000009339)	SLC35A2 (ENSODEG00000009076)	ENSODEG00000008988	TIMM17B (ENSODEG00000010704)	PCSK1N (ENSODEG00000010528)	ENSODEG00000009461	GATA1 (ENSODEG00000008814)	ENSODEG00000011241 #22	ENSODEG00000009872	SUV39H1 (ENSODEG00000010079)	WAS (ENSODEG00000009320)	ENSODEG00000009972	WDR13 (ENSODEG00000009758)	ENSODEG00000009372	ENSODEG00000019740	TBC1D25 (ENSODEG00000009376)	ENSODEG00000009371	PORCN (ENSODEG00000008780)	FTSJ1 (ENSODEG00000009855)	ENSODEG00000019635	ENSODEG00000009360	ENSODEG00000009058	ZNF182 (ENSODEG00000010486)
Degu	MODERN SPECIES	180								ENSODEG00000000558	LRRN3 (ENSODEG00000018623)	ENSODEG00000000581	ENSODEG00000018617	DNAJB9 (ENSODEG00000000633)	THAP5 (ENSODEG00000000636)	LRIG3 (ENSODEG00000000740)	ENSODEG00000000788	ENSODEG00000018604 #22	TAFA2 (ENSODEG00000000831)	ENSODEG00000001323	USP15 (ENSODEG00000001379)	MON2 (ENSODEG00000001456)	PPM1H (ENSODEG00000001605)	ENSODEG00000018680	ENSODEG00000018759	ENSODEG00000018696	ENSODEG00000001649	ENSODEG00000001660	AVPR1A (ENSODEG00000001671)
Long-tailed chinchilla	MODERN SPECIES	116	CDH24 (ENSCLAG00000011914) #8	PSMB11 (ENSCLAG00000010224)	PSMB5 (ENSCLAG00000011138) #9	C14orf93 (ENSCLAG00000010663) #10	AJUBA (ENSCLAG00000011137) #11	HAUS4 (ENSCLAG00000013026) #12	PRMT5 (ENSCLAG00000010579) #13	REM2 (ENSCLAG00000011939) #15	LRP10 (ENSCLAG00000010502) #16	MMP14 (ENSCLAG00000009784) #17	MRPL52 (ENSCLAG00000010931) #18	SLC7A7 (ENSCLAG00000011517) #19	OXA1L (ENSCLAG00000009417) #20	ENSCLAG00000009926	ABHD4 (ENSCLAG00000012500) #21	DAD1 (ENSCLAG00000011874) #22	ENSCLAG00000012044	TRDC (ENSCLAG00000010037) #26	ENSCLAG00000010144
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763.j #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.a.f	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000161790 #37	ENSGT00940000153073.b.b.b.a.e	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00900000140957.A.a.b ##27	ENSGT00940000160183.c ##30	ENSGT00940000163502	ENSGT00940000153130.a.a.b ##35	ENSGT00940000154455.a.a.g.b
Marmotini	ANCESTRAL SPECIES	15	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763.j #18	ENSGT00940000160134 #19	ENSGT00530000063506.B.o #20	ENSGT01090000260011.B.s	ENSGT01090000260011.B.t	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01080000258996	ENSGT01010000223901	ENSGT00550000075201 #26	ENSGT00940000160183.d.a #30	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.a.f	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000161790 #37	ENSGT00900000140957.A.a.a.c.a.a ##27	ENSGT00940000162998.b	ENSGT00940000163058
Alpin marmot	MODERN SPECIES	1	AJUBA (ENSMMMG00000013718) #11	HAUS4 (ENSMMMG00000013733) #12	PRMT5 (ENSMMMG00000013742) #13	RBM23 (ENSMMMG00000013775) #14	REM2 (ENSMMMG00000013781) #15	LRP10 (ENSMMMG00000013796) #16	MMP14 (ENSMMMG00000013801) #17	MRPL52 (ENSMMMG00000013813) #18	SLC7A7 (ENSMMMG00000013825) #19	ENSMMMG00000013841 #20	ENSMMMG00000013866	ENSMMMG00000013869	ENSMMMG00000013873	ENSMMMG00000013877	ABHD4 (ENSMMMG00000013878) #21	DAD1 (ENSMMMG00000013891) #22	ENSMMMG00000013901	ENSMMMG00000013930	ENSMMMG00000013935	ENSMMMG00000013936	TRDC (ENSMMMG00000013939) #26	ENSMMMG00000013943	ENSMMMG00000013946	ENSMMMG00000013951 #27	ENSMMMG00000013953 #29	TRAV34 (ENSMMMG00000013955) #31	TRAV29DV5 (ENSMMMG00000013960) ##35	ENSMMMG00000013970 ##35	TRAV22 (ENSMMMG00000013973) ##27	TRAV20 (ENSMMMG00000013979) ##30	ENSMMMG00000013981
Marmotini_b	ANCESTRAL SPECIES	58	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763.j #18	ENSGT00940000160134 #19	ENSGT00530000063506.B.o #20	ENSGT00910000148211	ENSGT01090000260011.B.s	ENSGT01090000260011.B.t	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01080000258996	ENSGT01010000223901	ENSGT00550000075201 #26	ENSGT00940000160183.d.a #30	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.a.f	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000161790 #37
Arctic ground squirrel	MODERN SPECIES	329	CDH24 (ENSUPAG00010011199) #8	PSMB11 (ENSUPAG00010011206)	PSMB5 (ENSUPAG00010011210) #9	C14orf93 (ENSUPAG00010011216) #10	AJUBA (ENSUPAG00010011224) #11	HAUS4 (ENSUPAG00010011240) #12	PRMT5 (ENSUPAG00010011261) #13	RBM23 (ENSUPAG00010011269) #14	LRP10 (ENSUPAG00010011283) #16	MMP14 (ENSUPAG00010011304) #17	MRPL52 (ENSUPAG00010011316) #18	SLC7A7 (ENSUPAG00010011328) #19	ENSUPAG00010011358 #20	ENSUPAG00010011365	ENSUPAG00010011367 #21	DAD1 (ENSUPAG00010011383) #22	ENSUPAG00010011393	ENSUPAG00010011399	ENSUPAG00010011401	ENSUPAG00010011402	TRDC (ENSUPAG00010011406) #26	ENSUPAG00010011410	ENSUPAG00010011419 #30	ENSUPAG00010011423	TRAV34 (ENSUPAG00010011430) #31	TRAV29DV5 (ENSUPAG00010011432) ##35	ENSUPAG00010011436 #35	ENSUPAG00010011442	ENSUPAG00010011447 ##35	ENSUPAG00010011450 #37
Squirrel	MODERN SPECIES	322	PSMB5 (ENSSTOG00000007134) #9	C14orf93 (ENSSTOG00000007124) #10	AJUBA (ENSSTOG00000023817) #11	HAUS4 (ENSSTOG00000020110) #12	PRMT5 (ENSSTOG00000010374) #13	RBM23 (ENSSTOG00000010354) #14	REM2 (ENSSTOG00000010340) #15	LRP10 (ENSSTOG00000010323) #16	MMP14 (ENSSTOG00000027121) #17	MRPL52 (ENSSTOG00000010317) #18	SLC7A7 (ENSSTOG00000003328) #19	ENSSTOG00000003318	ENSSTOG00000032926	ENSSTOG00000034134	ABHD4 (ENSSTOG00000023335) #21	DAD1 (ENSSTOG00000007925) #22	TRAV29DV5 (ENSSTOG00000025427) ##35
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	PSMB11 (ENSSVLG00005002893)	ENSSVLG00005002903 #9	C14orf93 (ENSSVLG00005002934) #10	AJUBA (ENSSVLG00005002965) #11	HAUS4 (ENSSVLG00005002983) #12	PRMT5 (ENSSVLG00005003037) #13	RBM23 (ENSSVLG00005003194) #14	REM2 (ENSSVLG00005003310) #15	LRP10 (ENSSVLG00005003327) #16	MMP14 (ENSSVLG00005003350) #17	ENSSVLG00005003381 #18	SLC7A7 (ENSSVLG00005003413) #19	OXA1L (ENSSVLG00005003453) #20	ENSSVLG00005003497	ABHD4 (ENSSVLG00005003510) #21	ENSSVLG00005003529 #22	ENSSVLG00005003608 #23	ENSSVLG00005003698	ENSSVLG00005003706	ENSSVLG00005003714	ENSSVLG00005003720	TRDV3 (ENSSVLG00005003727) #24	ENSSVLG00005003739	ENSSVLG00005003749 #29	TRAV36DV7 (ENSSVLG00005003757) #30	ENSSVLG00005003770 ##27	TRAV29DV5 (ENSSVLG00005003781) ##35	ENSSVLG00005003795 #35	ENSSVLG00005003805	ENSSVLG00005003811 ##35	ENSSVLG00005003825 ##27
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005004846	ENSSVLG00005004866	ENSSVLG00005004896	SAA4 (ENSSVLG00005004914)	ENSSVLG00005004937	SAAL1 (ENSSVLG00005004983)	TPH1 (ENSSVLG00005005094)	SERGEF (ENSSVLG00005005160)	KCNC1 (ENSSVLG00005005188)	MYOD1 (ENSSVLG00005005222)	OTOG (ENSSVLG00005005330)	USH1C (ENSSVLG00005005925)	ABCC8 (ENSSVLG00005006593)	KCNJ11 (ENSSVLG00005007700)	NUCB2 (ENSSVLG00005007770)	ENSSVLG00005007915 #22	PIK3C2A (ENSSVLG00005007973)	ENSSVLG00005008146	PLEKHA7 (ENSSVLG00005008253)	ENSSVLG00005008507	SOX6 (ENSSVLG00005008583)	INSC (ENSSVLG00005008947)	CALCB (ENSSVLG00005009182)	CALCA (ENSSVLG00005009221)	CYP2R1 (ENSSVLG00005009273)	PDE3B (ENSSVLG00005009340)	ENSSVLG00005009603	ENSSVLG00005009633	ENSSVLG00005009657	PSMA1 (ENSSVLG00005009698)	ENSSVLG00005009821
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00710000106790 #7	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35
Muroidea	ANCESTRAL SPECIES	36	ENSGT00710000106790 #7	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.a.h	ENSGT00900000140957.A.a.b ##27	ENSGT00940000163502	ENSGT00940000153130.a.a.b.f.b.a.b ##35
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01020000232693	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.r.b
Cricetinae	ANCESTRAL SPECIES	18	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	3	Psmb11 (ENSCGRG00001002129)	Psmb5 (ENSCGRG00001016436) #9	4931414P19Rik (ENSCGRG00001001465) #10	Ajuba (ENSCGRG00001014156) #11	ENSCGRG00001005166	Haus4 (ENSCGRG00001024703) #12	Prmt5 (ENSCGRG00001014293) #13	Rem2 (ENSCGRG00001003504) #15	Lrp10 (ENSCGRG00001009012) #16	Mmp14 (ENSCGRG00001015766) #17	Mrpl52 (ENSCGRG00001009095) #18	Slc7a7 (ENSCGRG00001021388) #19	Oxa1l (ENSCGRG00001023578) #20	Or6e1 (ENSCGRG00001005325)	Abhd4 (ENSCGRG00001022057) #21	ENSCGRG00001018967 #22
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001007634	Fancm (ENSCGRG00001023573)	ENSCGRG00001020987	Prpf39 (ENSCGRG00001022389)	Togaram1 (ENSCGRG00001020874)	Klhl28 (ENSCGRG00001022249)	Gm527 (ENSCGRG00001022771)	ENSCGRG00001023445	ENSCGRG00001003341	ENSCGRG00001006380	ENSCGRG00001011106	ENSCGRG00001009504	ENSCGRG00001010478	Lrfn5 (ENSCGRG00001012425)	ENSCGRG00001010233	ENSCGRG00001013073 #22	ENSCGRG00001021012	Fbxo33 (ENSCGRG00001023018)	ENSCGRG00001001417	ENSCGRG00001015024	Pnn (ENSCGRG00001015998)	Trappc6b (ENSCGRG00001016994)	Gemin2 (ENSCGRG00001017720)	Sec23a (ENSCGRG00001019639)	ENSCGRG00001002230	ENSCGRG00001003851	Clec14a (ENSCGRG00001008667)	Sstr1 (ENSCGRG00001011700)	Ttc6 (ENSCGRG00001002787)	ENSCGRG00001006180	Foxa1 (ENSCGRG00001007733)
Golden Hamster	MODERN SPECIES	811	Slc7a8 (ENSMAUG00000019384)	Acin1 (ENSMAUG00000000504) #7	ENSMAUG00000012369	Cdh24 (ENSMAUG00000021615) #8	Psmb11 (ENSMAUG00000017123)	ENSMAUG00000014813	ENSMAUG00000017591 #9	4931414P19Rik (ENSMAUG00000013152) #10	Ajuba (ENSMAUG00000014919) #11	Rem2 (ENSMAUG00000021314) #15	Lrp10 (ENSMAUG00000013461) #16	Mmp14 (ENSMAUG00000018577) #17	Mrpl52 (ENSMAUG00000000585) #18	Slc7a7 (ENSMAUG00000005323) #19	Oxa1l (ENSMAUG00000005100) #20	Dad1 (ENSMAUG00000001827) #22
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01020000232693	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.r.b
Northern American deer mouse	MODERN SPECIES	22	Cdh24 (ENSPEMG00000018892) #8	Psmb11 (ENSPEMG00000026627)	Psmb5 (ENSPEMG00000019276) #9	4931414P19Rik (ENSPEMG00000015496) #10	Ajuba (ENSPEMG00000019210) #11	Haus4 (ENSPEMG00000016122) #12	Prmt5 (ENSPEMG00000017614) #13	Rem2 (ENSPEMG00000011668) #15	Lrp10 (ENSPEMG00000013768) #16	Mmp14 (ENSPEMG00000014840) #17	Mrpl52 (ENSPEMG00000010147) #18	Slc7a7 (ENSPEMG00000016955) #19	Oxa1l (ENSPEMG00000016711) #20	Or6e1 (ENSPEMG00000004435)	Abhd4 (ENSPEMG00000003226) #21	Dad1 (ENSPEMG00000009539) #22	Trac (ENSPEMG00000025944)	ENSPEMG00000028259	ENSPEMG00000028337	ENSPEMG00000029710	ENSPEMG00000025126 #26	ENSPEMG00000024488 ##33	Trav21-dv12 (ENSPEMG00000026566) #32	Trav19 (ENSPEMG00000029181) ##35	ENSPEMG00000029205 #35	Trav17 (ENSPEMG00000029744)	ENSPEMG00000030702	ENSPEMG00000027996 #37	ENSPEMG00000031273 ##27	ENSPEMG00000025072 ##35	ENSPEMG00000029560 ##35
Prairie vole	MODERN SPECIES	163	ENSMOCG00000015141 #9	4931414P19Rik (ENSMOCG00000012978) #10	Ajuba (ENSMOCG00000014127) #11	Haus4 (ENSMOCG00000005352) #12	Prmt5 (ENSMOCG00000017320) #13	Rem2 (ENSMOCG00000000581) #15	Lrp10 (ENSMOCG00000006687) #16	Mmp14 (ENSMOCG00000006065) #17	ENSMOCG00000016920 #18	Slc7a7 (ENSMOCG00000000960) #19	Oxa1l (ENSMOCG00000013102) #20	ENSMOCG00000005060	Or6e1 (ENSMOCG00000003935)	ENSMOCG00000001745	Abhd4 (ENSMOCG00000021742) #21	Dad1 (ENSMOCG00000020248) #22
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.a.h	ENSGT00940000161790.i #37	ENSGT00900000140957.A.a.b ##27	ENSGT00940000161790.j #37
Mus	ANCESTRAL SPECIES	8	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135794	ENSGT00950000186557	ENSGT00860000136119	ENSGT00950000186467	ENSGT00950000186478	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000163224.b.b
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135636	ENSGT00860000135984	ENSGT00860000135941	ENSGT00950000186533	ENSGT00860000135743	ENSGT00950000186527	ENSGT00950000186517	ENSGT00950000186473	ENSGT00950000186498	ENSGT00950000186489	ENSGT00950000186528	ENSGT00860000136090	ENSGT00860000136200	ENSGT00860000135673
Ryukyu mouse	MODERN SPECIES	5	Cdh24 (MGP_CAROLIEiJ_G0019264) #8	Psmb11 (MGP_CAROLIEiJ_G0019263)	Psmb5 (MGP_CAROLIEiJ_G0019262) #9	4931414P19Rik (MGP_CAROLIEiJ_G0019261) #10	Ajuba (MGP_CAROLIEiJ_G0019260) #11	Haus4 (MGP_CAROLIEiJ_G0019259) #12	Prmt5 (MGP_CAROLIEiJ_G0019258) #13	Rem2 (MGP_CAROLIEiJ_G0019257) #15	Lrp10 (MGP_CAROLIEiJ_G0019256) #16	Mmp14 (MGP_CAROLIEiJ_G0019255) #17	Mrpl52 (MGP_CAROLIEiJ_G0019254) #18	Slc7a7 (MGP_CAROLIEiJ_G0019253) #19	Oxa1l (MGP_CAROLIEiJ_G0019252) #20	Or6e1 (MGP_CAROLIEiJ_G0019251)	Abhd4 (MGP_CAROLIEiJ_G0019250) #21	Dad1 (MGP_CAROLIEiJ_G0019249) #22	Trac (MGP_CAROLIEiJ_G0002120)	Traj2 (MGP_CAROLIEiJ_G0002178)	Traj3 (MGP_CAROLIEiJ_G0002177)	Traj4 (MGP_CAROLIEiJ_G0002176)	Traj5 (MGP_CAROLIEiJ_G0002175)	Traj6 (MGP_CAROLIEiJ_G0002174)	Traj7 (MGP_CAROLIEiJ_G0002173)	Traj9 (MGP_CAROLIEiJ_G0002172)	Traj11 (MGP_CAROLIEiJ_G0002171)	MGP_CAROLIEiJ_G0002170	Traj13 (MGP_CAROLIEiJ_G0002169)	Traj15 (MGP_CAROLIEiJ_G0002168)	Traj16 (MGP_CAROLIEiJ_G0002167)	Traj17 (MGP_CAROLIEiJ_G0002166)	Traj18 (MGP_CAROLIEiJ_G0002165)
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000159567 #8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135636	ENSGT00860000135984	ENSGT00860000135941	ENSGT00950000186533	ENSGT00860000135743	ENSGT00950000186527	ENSGT00950000186517	ENSGT00950000186473	ENSGT00950000186498	ENSGT00950000186489	ENSGT00950000186528	ENSGT00860000136090	ENSGT00860000136200	ENSGT00860000135673
Mouse	MODERN SPECIES	5	Cdh24 (ENSMUSG00000059674) #8	Psmb11 (ENSMUSG00000072423)	Psmb5 (ENSMUSG00000022193) #9	4931414P19Rik (ENSMUSG00000022179) #10	Ajuba (ENSMUSG00000022178) #11	Haus4 (ENSMUSG00000022177) #12	Prmt5 (ENSMUSG00000023110) #13	Rem2 (ENSMUSG00000022176) #15	Lrp10 (ENSMUSG00000022175) #16	Mmp14 (ENSMUSG00000000957) #17	Mrpl52 (ENSMUSG00000010406) #18	Slc7a7 (ENSMUSG00000000958) #19	Oxa1l (ENSMUSG00000000959) #20	Or6e1 (ENSMUSG00000048153)	Abhd4 (ENSMUSG00000040997) #21	Dad1 (ENSMUSG00000022174) #22	Trac (ENSMUSG00000076928)	Traj2 (ENSMUSG00000076926)	Traj3 (ENSMUSG00000076925)	Traj4 (ENSMUSG00000076924)	Traj5 (ENSMUSG00000076923)	Traj6 (ENSMUSG00000076922)	Traj7 (ENSMUSG00000076921)	Traj9 (ENSMUSG00000076919)	Traj11 (ENSMUSG00000076918)	Traj12 (ENSMUSG00000076917)	Traj13 (ENSMUSG00000076916)	Traj15 (ENSMUSG00000076914)	Traj16 (ENSMUSG00000076913)	Traj17 (ENSMUSG00000076912)	Traj18 (ENSMUSG00000076911)
Mus_C	ANCESTRAL SPECIES	20	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00860000135636	ENSGT00860000135984	ENSGT00860000135941	ENSGT00950000186533	ENSGT00860000135743	ENSGT00950000186527	ENSGT00950000186517	ENSGT00950000186473	ENSGT00950000186498	ENSGT00950000186489	ENSGT00950000186528	ENSGT00860000136090	ENSGT00860000136200	ENSGT00860000135673
Steppe mouse	MODERN SPECIES	2984	Psmb11 (ENSMSIG00000016415)	Psmb5 (ENSMSIG00000016401) #9	4931414P19Rik (ENSMSIG00000016385) #10	Ajuba (ENSMSIG00000016353) #11	Haus4 (ENSMSIG00000016328) #12	Prmt5 (ENSMSIG00000016312) #13	Rem2 (ENSMSIG00000016298) #15	Lrp10 (ENSMSIG00000016275) #16	Mmp14 (ENSMSIG00000016218) #17	ENSMSIG00000016189 #18	Slc7a7 (ENSMSIG00000016170) #19	Oxa1l (ENSMSIG00000016147) #20	Or6e1 (ENSMSIG00000016138)	ENSMSIG00000016133	Abhd4 (ENSMSIG00000016112) #21	Dad1 (ENSMSIG00000016087) #22	Trac (ENSMSIG00000016077)	ENSMSIG00000016075	Trdc (ENSMSIG00000016073) #26	ENSMSIG00000016066	ENSMSIG00000016053 #29	ENSMSIG00000016039	ENSMSIG00000016011 #32
spretus	MODERN SPECIES	5	Cdh24 (MGP_SPRETEiJ_G0020154) #8	Psmb11 (MGP_SPRETEiJ_G0020153)	Psmb5 (MGP_SPRETEiJ_G0020152) #9	4931414P19Rik (MGP_SPRETEiJ_G0020151) #10	Ajuba (MGP_SPRETEiJ_G0020150) #11	Haus4 (MGP_SPRETEiJ_G0020149) #12	Prmt5 (MGP_SPRETEiJ_G0020148) #13	Rem2 (MGP_SPRETEiJ_G0020147) #15	Lrp10 (MGP_SPRETEiJ_G0020146) #16	Mmp14 (MGP_SPRETEiJ_G0020145) #17	Mrpl52 (MGP_SPRETEiJ_G0020144) #18	Slc7a7 (MGP_SPRETEiJ_G0020143) #19	Oxa1l (MGP_SPRETEiJ_G0020142) #20	Or6e1 (MGP_SPRETEiJ_G0020141)	Abhd4 (MGP_SPRETEiJ_G0020140) #21	Dad1 (MGP_SPRETEiJ_G0020139) #22	Trac (MGP_SPRETEiJ_G0002246)	Traj2 (MGP_SPRETEiJ_G0002307)	Traj3 (MGP_SPRETEiJ_G0002306)	Traj4 (MGP_SPRETEiJ_G0002305)	Traj5 (MGP_SPRETEiJ_G0002304)	Traj6 (MGP_SPRETEiJ_G0002303)	Traj7 (MGP_SPRETEiJ_G0002302)	Traj9 (MGP_SPRETEiJ_G0002301)	Traj11 (MGP_SPRETEiJ_G0002300)	Traj12 (MGP_SPRETEiJ_G0002299)	Traj13 (MGP_SPRETEiJ_G0002298)	Traj15 (MGP_SPRETEiJ_G0002297)	Traj16 (MGP_SPRETEiJ_G0002296)	Traj17 (MGP_SPRETEiJ_G0002295)	Traj18 (MGP_SPRETEiJ_G0002294)
Shrew mouse	MODERN SPECIES	21	Cdh24 (MGP_PahariEiJ_G0030283) #8	Psmb11 (MGP_PahariEiJ_G0030282)	Psmb5 (MGP_PahariEiJ_G0030281) #9	4931414P19Rik (MGP_PahariEiJ_G0030280) #10	Ajuba (MGP_PahariEiJ_G0030279) #11	Haus4 (MGP_PahariEiJ_G0030278) #12	Prmt5 (MGP_PahariEiJ_G0030277) #13	Rem2 (MGP_PahariEiJ_G0030276) #15	Lrp10 (MGP_PahariEiJ_G0030275) #16	Mmp14 (MGP_PahariEiJ_G0030274) #17	Mrpl52 (MGP_PahariEiJ_G0030273) #18	MGP_PahariEiJ_G0030272 #19	Oxa1l (MGP_PahariEiJ_G0030271) #20	Or6e1 (MGP_PahariEiJ_G0030270)	Abhd4 (MGP_PahariEiJ_G0030269) #21	Dad1 (MGP_PahariEiJ_G0030268) #22	Trac (MGP_PahariEiJ_G0001958)	Traj2 (MGP_PahariEiJ_G0002028)	Traj3 (MGP_PahariEiJ_G0002027)	Traj4 (MGP_PahariEiJ_G0002026)	Traj5 (MGP_PahariEiJ_G0002025)	Traj6 (MGP_PahariEiJ_G0002024)	MGP_PahariEiJ_G0002023	MGP_PahariEiJ_G0002022	Traj11 (MGP_PahariEiJ_G0002021)	Traj12 (MGP_PahariEiJ_G0002020)	Traj13 (MGP_PahariEiJ_G0002019)	Traj15 (MGP_PahariEiJ_G0002018)	Traj16 (MGP_PahariEiJ_G0002017)	Traj17 (MGP_PahariEiJ_G0002016)	Traj18 (MGP_PahariEiJ_G0002015)
Rat	MODERN SPECIES	6	Acin1 (ENSRNOG00000013533) #7	Gm17606 (ENSRNOG00000065567)	Cdh24 (ENSRNOG00000013503) #8	Psmb5 (ENSRNOG00000013386) #9	RGD1565222 (ENSRNOG00000013317) #10	Ajuba (ENSRNOG00000012791) #11	Haus4 (ENSRNOG00000039284) #12	Prmt5 (ENSRNOG00000012046) #13	Rem2 (ENSRNOG00000011646) #15	Lrp10 (ENSRNOG00000011592) #16	Mmp14 (ENSRNOG00000010947) #17	Slc7a7 (ENSRNOG00000010296) #19	Oxa1l (ENSRNOG00000009713) #20	Or6e1 (ENSRNOG00000068252)	Abhd4 (ENSRNOG00000009244) #21	Dad1 (ENSRNOG00000009090) #22	ENSRNOG00000070834	ENSRNOG00000067178	AC097037.1 (ENSRNOG00000033109) #24	ENSRNOG00000065679 #26	ENSRNOG00000066946	ENSRNOG00000065420	LOC108353026 (ENSRNOG00000068621) #31	Trav21-dv12 (ENSRNOG00000065401) #32	ENSRNOG00000065769 ##35	LOC120096971 (ENSRNOG00000042103)	ENSRNOG00000066538 ##35	ENSRNOG00000065085	AABR07017902.1 (ENSRNOG00000009074)	ENSRNOG00000064043 ##27	AABR07017868.4 (ENSRNOG00000056892) ##35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1079	ENSNGAG00000020569 #7	Cdh24 (ENSNGAG00000010716) #8	Psmb5 (ENSNGAG00000014706) #9	ENSNGAG00000017377	4931414P19Rik (ENSNGAG00000018515) #10	ENSNGAG00000020767 #11	Haus4 (ENSNGAG00000001010) #12	Prmt5 (ENSNGAG00000004212) #13	Rem2 (ENSNGAG00000010180) #15	Lrp10 (ENSNGAG00000001455) #16	Mmp14 (ENSNGAG00000011134) #17	Mrpl52 (ENSNGAG00000011028) #18	Slc7a7 (ENSNGAG00000014120) #19	Oxa1l (ENSNGAG00000015527) #20	Abhd4 (ENSNGAG00000019786) #21	Dad1 (ENSNGAG00000002448) #22
Kangaroo rat	MODERN SPECIES	403	ENSDORG00000010574 #7	Cdh24 (ENSDORG00000010568) #8	Psmb11 (ENSDORG00000010567)	Psmb5 (ENSDORG00000024250) #9	ENSDORG00000010563 #9	4931414P19Rik (ENSDORG00000004064) #10	ENSDORG00000023447 #11	Prmt5 (ENSDORG00000004929) #13	ENSDORG00000004926 #14	Rem2 (ENSDORG00000004924) #15	Lrp10 (ENSDORG00000004922) #16	Mmp14 (ENSDORG00000000144) #17	Slc7a7 (ENSDORG00000011331) #19	Or6e1 (ENSDORG00000028076)	Abhd4 (ENSDORG00000008204) #21	Dad1 (ENSDORG00000008173) #22	ENSDORG00000025415	ENSDORG00000026434
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01060000252029	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000153130.a.b.b ##35	ENSGT00950000184977	ENSGT00940000163717	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00940000153073.b.b.b.b	ENSGT00940000153073.a	ENSGT00940000163502	ENSGT00940000159469.a.b.a
Rabbit	MODERN SPECIES	8	PSMB11 (ENSOCUG00000013112)	PSMB5 (ENSOCUG00000013109) #9	C14orf93 (ENSOCUG00000013097) #10	ENSOCUG00000001058 #11	HAUS4 (ENSOCUG00000013088) #12	PRMT5 (ENSOCUG00000002013) #13	RBM23 (ENSOCUG00000002006) #14	ENSOCUG00000001255 #15	LRP10 (ENSOCUG00000016380) #16	MRPL52 (ENSOCUG00000010240) #18	SLC7A7 (ENSOCUG00000000724) #19	OXA1L (ENSOCUG00000000720) #20	ENSOCUG00000026780	ENSOCUG00000021544	ABHD4 (ENSOCUG00000014277) #21	DAD1 (ENSOCUG00000014269) #22	ENSOCUG00000014258	ENSOCUG00000036041	ENSOCUG00000030264	ENSOCUG00000036453	ENSOCUG00000036554	ENSOCUG00000035549	ENSOCUG00000032804	TRDV3 (ENSOCUG00000025591) #24	ENSOCUG00000014250 #26	ENSOCUG00000033175 #27	ENSOCUG00000039364	ENSOCUG00000024472 #29	ENSOCUG00000023049 #29	ENSOCUG00000038654 ##35	TRAV26-2 (ENSOCUG00000032620) #32
Pika	MODERN SPECIES	990					C14orf93 (ENSOPRG00000001155) #10	HAUS4 (ENSOPRG00000001137) #12	PRMT5 (ENSOPRG00000001113) #13	RBM23 (ENSOPRG00000001092) #14	REM2 (ENSOPRG00000001065) #15	LRP10 (ENSOPRG00000001050) #16	MMP14 (ENSOPRG00000001031) #17	MRPL52 (ENSOPRG00000001021) #18	SLC7A7 (ENSOPRG00000001007) #19	OXA1L (ENSOPRG00000000988) #20	ABHD4 (ENSOPRG00000000973) #21	DAD1 (ENSOPRG00000000950) #22
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00910000148211	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162998.a	ENSGT00940000153130.a.b.a.a ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000153130.a.b.b ##35	ENSGT00940000166072	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000170768	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408
Carnivora	ANCESTRAL SPECIES		ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00920000149497	ENSGT00940000164778	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000165763	ENSGT00940000153130.a.a.a.c.b ##35
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134.e #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.c	ENSGT01090000260011.B.d	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162524.A #32	ENSGT00940000161790 #37	ENSGT00940000165763	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.b.o.a.a	ENSGT00940000153130.a.b.a.a.a ##35	ENSGT00940000163717	ENSGT00940000153130.a.a.a.c.a ##35
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134.e #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.c	ENSGT01090000260011.B.d	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162524.A #32	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000163224.b.b	ENSGT00940000153073.b.b.b.b.o.a.a	ENSGT00940000153130.a.b.a.a.a ##35	ENSGT00940000163717	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00900000140957.A.a.b ##27
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134.e #19	ENSGT00530000063506.B #20	ENSGT00910000148211	ENSGT01090000260011.B.c	ENSGT01090000260011.B.d	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00940000170768	ENSGT00940000160147.a.e #29	ENSGT00940000160183.d.a #30	ENSGT00900000140957.C ##27	ENSGT00940000162524.A #32	ENSGT00940000161790 #37	ENSGT00940000162840.C #31	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000163224.b.b	ENSGT00940000153073.b.b.b.b.o.a.a	ENSGT00940000153130.a.b.a.a.a ##35	ENSGT00940000163717	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00940000153073.b.b.b.b.p.a
lion	DUPLICATION
lion	MODERN SPECIES	6	PSMB11 (ENSPLOG00000010711)	PSMB5 (ENSPLOG00000010681) #9	C14orf93 (ENSPLOG00000010622) #10	AJUBA (ENSPLOG00000010481) #11	HAUS4 (ENSPLOG00000010383) #12	PRMT5 (ENSPLOG00000010113) #13	RBM23 (ENSPLOG00000009954) #14	REM2 (ENSPLOG00000009863) #15	LRP10 (ENSPLOG00000009786) #16	MMP14 (ENSPLOG00000009721) #17	MRPL52 (ENSPLOG00000009555) #18	SLC7A7 (ENSPLOG00000009515) #19	OXA1L (ENSPLOG00000009362) #20	ENSPLOG00000009334	ABHD4 (ENSPLOG00000009213) #21	ENSPLOG00000009186 #22	TRDC (ENSPLOG00000009139) #26	ENSPLOG00000008643 #23	ENSPLOG00000008497	TRAV41 (ENSPLOG00000010870) #27	ENSPLOG00000010828 #29	ENSPLOG00000010736 #29	ENSPLOG00000010709 #30	ENSPLOG00000010699 ##27	ENSPLOG00000010675 #32	ENSPLOG00000010651 #37	TRAV29DV5 (ENSPLOG00000010635) ##35	TRAV27 (ENSPLOG00000010609)	ENSPLOG00000010599	ENSPLOG00000010579 ##35	ENSPLOG00000010563
lion	MODERN SPECIES	315																ENSPLOG00000021585 #22
leopard	MODERN SPECIES	132													ENSPPRG00000019685	ENSPPRG00000003218	ABHD4 (ENSPPRG00000003254) #21	DAD1 (ENSPPRG00000003263) #22	ENSPPRG00000003821	ENSPPRG00000003878	ENSPPRG00000003882	ENSPPRG00000019699	ENSPPRG00000003891 #29	TRAV34 (ENSPPRG00000003893) #31	TRAV29DV5 (ENSPPRG00000004199) ##35	ENSPPRG00000004206	ENSPPRG00000004355 ##27	ENSPPRG00000004368	ENSPPRG00000004456	ENSPPRG00000004471	ENSPPRG00000004480 ##27	ENSPPRG00000004567	ENSPPRG00000004581 ##27
Tiger	MODERN SPECIES	578	C14orf93 (ENSPTIG00000013979) #10	ENSPTIG00000013120 #11	HAUS4 (ENSPTIG00000008583) #12	PRMT5 (ENSPTIG00000014268) #13	RBM23 (ENSPTIG00000007831) #14	REM2 (ENSPTIG00000021000) #15	LRP10 (ENSPTIG00000019760) #16	MMP14 (ENSPTIG00000018375) #17	MRPL52 (ENSPTIG00000015624) #18	SLC7A7 (ENSPTIG00000013224) #19	OXA1L (ENSPTIG00000011174) #20	ENSPTIG00000006761	ENSPTIG00000006755	ENSPTIG00000006751	ABHD4 (ENSPTIG00000006336) #21	DAD1 (ENSPTIG00000005259) #22	ENSPTIG00000001852	ENSPTIG00000018735	TRAV29DV5 (ENSPTIG00000018359) ##35	TRAV27 (ENSPTIG00000018322)	ENSPTIG00000017571
Cat	MODERN SPECIES	237	PSMB5 (ENSFCAG00000023593) #9	CB3H14orf93 (ENSFCAG00000006642) #10	AJUBA (ENSFCAG00000006641) #11	HAUS4 (ENSFCAG00000006639) #12	PRMT5 (ENSFCAG00000006636) #13	REM2 (ENSFCAG00000006630) #15	LRP10 (ENSFCAG00000006628) #16	MMP14 (ENSFCAG00000006626) #17	MRPL52 (ENSFCAG00000006625) #18	SLC7A7 (ENSFCAG00000024866) #19	OXA1L (ENSFCAG00000006623) #20	ENSFCAG00000022681	ENSFCAG00000052623	ENSFCAG00000049819	ABHD4 (ENSFCAG00000003046) #21	DAD1 (ENSFCAG00000029121) #22	ENSFCAG00000040169	ENSFCAG00000041607	ENSFCAG00000041658	ENSFCAG00000031436	ENSFCAG00000053669 #26	TRAV41 (ENSFCAG00000052720) #27	TRAV40 (ENSFCAG00000047365)	ENSFCAG00000042044	ENSFCAG00000050753 ##35	ENSFCAG00000052250 #30	ENSFCAG00000049097 ##27	TRAV34 (ENSFCAG00000043775) #31	ENSFCAG00000053564	TRAV29DV5 (ENSFCAG00000026217) ##35	ENSFCAG00000051318 #35
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000165763	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00900000140957.A.b ##27	ENSGT00940000153130.a.b.a.b #35
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00950000186438	ENSGT01100000265770	ENSGT00990000206538	ENSGT00980000202431	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00920000149497	ENSGT00940000160147.a.a #29	ENSGT00940000166072	ENSGT00940000160147.a.b #29	ENSGT00940000160183.d.a #30	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00950000186438	ENSGT01100000265770	ENSGT00990000206538	ENSGT00980000202431	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000164778	ENSGT00920000149497	ENSGT00940000160147.a.a #29	ENSGT00940000166072	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000165763	ENSGT00940000153130.a.a.a.c.b ##35
Dingo	MODERN SPECIES	161	C14orf93 (ENSCAFG00020007664) #10	AJUBA (ENSCAFG00020007676) #11	HAUS4 (ENSCAFG00020007681) #12	PRMT5 (ENSCAFG00020007687) #13	ENSCAFG00020007707	RBM23 (ENSCAFG00020007711) #14	REM2 (ENSCAFG00020007720) #15	LRP10 (ENSCAFG00020007743) #16	MMP14 (ENSCAFG00020007758) #17	MRPL52 (ENSCAFG00020007772) #18	SLC7A7 (ENSCAFG00020007817) #19	OXA1L (ENSCAFG00020007825) #20	ENSCAFG00020007834	ENSCAFG00020007839	ABHD4 (ENSCAFG00020007841) #21	DAD1 (ENSCAFG00020007850) #22	ENSCAFG00020007875	ENSCAFG00020007898	ENSCAFG00020007900	ENSCAFG00020007902	ENSCAFG00020007903	ENSCAFG00020007905	TRDC (ENSCAFG00020007910) #26	ENSCAFG00020007917	ENSCAFG00020007918 #29	ENSCAFG00020007919	TRAV34 (ENSCAFG00020007927) #31	ENSCAFG00020007960	ENSCAFG00020007962	TRAV29DV5 (ENSCAFG00020007963) ##35	ENSCAFG00020007964 ##27
Dog	MODERN SPECIES	36	CDH24 (ENSCAFG00845002943) #8	PSMB11 (ENSCAFG00845002924)	PSMB5 (ENSCAFG00845002902) #9	C8H14orf93 (ENSCAFG00845002874) #10	AJUBA (ENSCAFG00845002700) #11	PRMT5 (ENSCAFG00845002461) #13	RBM23 (ENSCAFG00845002223) #14	LRP10 (ENSCAFG00845002154) #16	MMP14 (ENSCAFG00845002121) #17	MRPL52 (ENSCAFG00845002067) #18	ENSCAFG00845002028 #19	OXA1L (ENSCAFG00845002006) #20	OR6E1 (ENSCAFG00845001980)	ENSCAFG00845001954	ABHD4 (ENSCAFG00845001920) #21	DAD1 (ENSCAFG00845001882) #22	ENSCAFG00845001851	ENSCAFG00845001837	ENSCAFG00845001794	ENSCAFG00845001774	ENSCAFG00845001757	ENSCAFG00845001753	ENSCAFG00845001743	TRDV3 (ENSCAFG00845001727) #24	ENSCAFG00845001720	TRDC (ENSCAFG00845001699) #26	TRAV40 (ENSCAFG00845001678)	ENSCAFG00845001669 #29	ENSCAFG00845001612	ENSCAFG00845001603 ##35	ENSCAFG00845001593
Red fox	MODERN SPECIES	65	CUNH14orf93 (ENSVVUG00000019857) #10	AJUBA (ENSVVUG00000019846) #11	HAUS4 (ENSVVUG00000019820) #12	PRMT5 (ENSVVUG00000019817) #13	RBM23 (ENSVVUG00000019815) #14	REM2 (ENSVVUG00000019805) #15	LRP10 (ENSVVUG00000019801) #16	MMP14 (ENSVVUG00000019794) #17	ENSVVUG00000019793 #18	SLC7A7 (ENSVVUG00000019789) #19	OXA1L (ENSVVUG00000019787) #20	ENSVVUG00000019784	ENSVVUG00000019779	ABHD4 (ENSVVUG00000019775) #21	ENSVVUG00000019773	DAD1 (ENSVVUG00000019768) #22	ENSVVUG00000019766	ENSVVUG00000019763	ENSVVUG00000019762	ENSVVUG00000019761	TRDC (ENSVVUG00000019759) #26
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000162840.C #31	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153130.a.b.a.a.a ##35	ENSGT00940000163717	ENSGT00940000163708	ENSGT00940000160183.c.c ##30	ENSGT00940000163052
Mustelinae	ANCESTRAL SPECIES	32	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.a	ENSGT01090000260011.B.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000162840.C #31	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153130.a.b.a.a.a ##35	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00900000140957.A.a.b ##27	ENSGT00940000163708	ENSGT00940000160183.c.c ##30	ENSGT00940000163052
Ferret	MODERN SPECIES	210	PSMB5 (ENSMPUG00000007019) #9	C14orf93 (ENSMPUG00000007064) #10	AJUBA (ENSMPUG00000007116) #11	HAUS4 (ENSMPUG00000007129) #12	PRMT5 (ENSMPUG00000007137) #13	RBM23 (ENSMPUG00000007151) #14	REM2 (ENSMPUG00000007167) #15	LRP10 (ENSMPUG00000007201) #16	MMP14 (ENSMPUG00000007212) #17	SLC7A7 (ENSMPUG00000007228) #19	MRPL52 (ENSMPUG00000007234) #18	OXA1L (ENSMPUG00000007269) #20	ENSMPUG00000018879	ENSMPUG00000018882	ABHD4 (ENSMPUG00000007277) #21	DAD1 (ENSMPUG00000007289) #22	ENSMPUG00000007297	TRDV3 (ENSMPUG00000018887) #24	TRDC (ENSMPUG00000007319) #26	ENSMPUG00000007328	TRAV41 (ENSMPUG00000007333) #27	ENSMPUG00000007338 #29	ENSMPUG00000007342 #29	TRAV26-2 (ENSMPUG00000007358) #32	TRAV29DV5 (ENSMPUG00000007363) ##35	ENSMPUG00000007370 ##27	TRAV21 (ENSMPUG00000007375)	TRAV20 (ENSMPUG00000007384) ##30	ENSMPUG00000007390	TRAV18 (ENSMPUG00000007393)	TRAV17 (ENSMPUG00000007402)
American mink	MODERN SPECIES	148	PSMB5 (ENSNVIG00000021100) #9	C14orf93 (ENSNVIG00000021065) #10	AJUBA (ENSNVIG00000021037) #11	HAUS4 (ENSNVIG00000020969) #12	PRMT5 (ENSNVIG00000020831) #13	RBM23 (ENSNVIG00000020783) #14	REM2 (ENSNVIG00000020767) #15	LRP10 (ENSNVIG00000020742) #16	MMP14 (ENSNVIG00000020727) #17	MRPL52 (ENSNVIG00000020698) #18	SLC7A7 (ENSNVIG00000020676) #19	OXA1L (ENSNVIG00000020650) #20	ENSNVIG00000020641	ENSNVIG00000020633	ABHD4 (ENSNVIG00000020605) #21	DAD1 (ENSNVIG00000020599) #22	ENSNVIG00000020594	ENSNVIG00000020585	ENSNVIG00000020584	ENSNVIG00000020573	ENSNVIG00000020479 #26	ENSNVIG00000020461	ENSNVIG00000020457 #30	ENSNVIG00000020454 ##35	TRAV34 (ENSNVIG00000020450) #31	TRAV29DV5 (ENSNVIG00000020447) ##35	ENSNVIG00000020443 #35	ENSNVIG00000020435 ##35	TRAV23DV6 (ENSNVIG00000020429) ##35	ENSNVIG00000020424 ##27	ENSNVIG00000020421
Ursidae	ANCESTRAL SPECIES	10	ENSGT00940000162200	ENSGT00940000157841.j #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01020000232693	ENSGT00730000111639 #24	ENSGT00550000075201 #26
Ursus	ANCESTRAL SPECIES	140	ENSGT00940000162200	ENSGT00940000157841.j #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01050000245453
Polar bear	MODERN SPECIES	427	CDH24 (ENSUMAG00000014114) #8	ENSUMAG00000014103	PSMB5 (ENSUMAG00000014101) #9	C14orf93 (ENSUMAG00000014095) #10	ENSUMAG00000014092 #11	HAUS4 (ENSUMAG00000014089) #12	PRMT5 (ENSUMAG00000014079) #13	RBM23 (ENSUMAG00000014075) #14	REM2 (ENSUMAG00000014074) #15	MMP14 (ENSUMAG00000014016) #17	ENSUMAG00000014007 #18	SLC7A7 (ENSUMAG00000013991) #19	OXA1L (ENSUMAG00000013987) #20	ENSUMAG00000013983	ABHD4 (ENSUMAG00000013975) #21	DAD1 (ENSUMAG00000013974) #22	ENSUMAG00000013972	ENSUMAG00000013970	ENSUMAG00000013968
American black bear	MODERN SPECIES	2436										MMP14 (ENSUAMG00000022581) #17	MRPL52 (ENSUAMG00000022578) #18	SLC7A7 (ENSUAMG00000022575) #19	OXA1L (ENSUAMG00000022573) #20	ENSUAMG00000022571	ABHD4 (ENSUAMG00000022567) #21	DAD1 (ENSUAMG00000022566) #22	ENSUAMG00000022561	TRAJ18 (ENSUAMG00000022559)
Giant Panda	MODERN SPECIES	12	ENSAMEG00000030268	PSMB5 (ENSAMEG00000028497) #9	C14orf93 (ENSAMEG00000007462) #10	AJUBA (ENSAMEG00000007445) #11	HAUS4 (ENSAMEG00000007432) #12	PRMT5 (ENSAMEG00000007355) #13	RBM23 (ENSAMEG00000007322) #14	REM2 (ENSAMEG00000007306) #15	LRP10 (ENSAMEG00000007296) #16	MMP14 (ENSAMEG00000007272) #17	MRPL52 (ENSAMEG00000029738) #18	SLC7A7 (ENSAMEG00000007223) #19	OXA1L (ENSAMEG00000007188) #20	ENSAMEG00000007183	ABHD4 (ENSAMEG00000007159) #21	DAD1 (ENSAMEG00000024890) #22	ENSAMEG00000027810	ENSAMEG00000027441	ENSAMEG00000024270	ENSAMEG00000024698	TRDV3 (ENSAMEG00000007139) #24	ENSAMEG00000029177	ENSAMEG00000007133 #26	ENSAMEG00000030541 #27	ENSAMEG00000023771 ##35	ENSAMEG00000023714	ENSAMEG00000024115 ##35	ENSAMEG00000025543 ##35	TRAV24 (ENSAMEG00000025745)	ENSAMEG00000026651	TRAV20 (ENSAMEG00000007052) ##30
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01100000264510	ENSGT01070000257199	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000165763	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.a.a	ENSGT00940000153130.a.b.a.a.a ##35
Chiroptera	ANCESTRAL SPECIES	34	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00900000140957.A.a.b ##27	ENSGT00940000163717	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35
Microchiroptera	ANCESTRAL SPECIES	29	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00900000140957.C ##27	ENSGT00940000161790 #37	ENSGT00940000153130.a.a.a.c.a ##35	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000153073.b.b.b.a.a.e
Greater horseshoe bat	MODERN SPECIES	24	C14orf93 (ENSRFEG00010001313) #10	AJUBA (ENSRFEG00010001220) #11	PRMT5 (ENSRFEG00010001074) #13	RBM23 (ENSRFEG00010000986) #14	REM2 (ENSRFEG00010000938) #15	LRP10 (ENSRFEG00010000869) #16	MMP14 (ENSRFEG00010000831) #17	MRPL52 (ENSRFEG00010000802) #18	SLC7A7 (ENSRFEG00010000765) #19	OXA1L (ENSRFEG00010000726) #20	ENSRFEG00010000700	ENSRFEG00010000692	ENSRFEG00010000679	ENSRFEG00010000659	ABHD4 (ENSRFEG00010000649) #21	DAD1 (ENSRFEG00010000633) #22	ENSRFEG00010000621	ENSRFEG00010000611	ENSRFEG00010000606	ENSRFEG00010000597	ENSRFEG00010000592	ENSRFEG00010000578	TRDV3 (ENSRFEG00010000569) #24	TRDC (ENSRFEG00010000556) #26	ENSRFEG00010000546	TRAV41 (ENSRFEG00010000523) #27	ENSRFEG00010000509 #29	TRAV26-2 (ENSRFEG00010000503) #32	ENSRFEG00010000462 ##35	ENSRFEG00010000443 #35	ENSRFEG00010000428 ##35
Microbat	MODERN SPECIES	1234	C14orf93 (ENSMLUG00000014274) #10	AJUBA (ENSMLUG00000012944) #11	HAUS4 (ENSMLUG00000012934) #12	PRMT5 (ENSMLUG00000012929) #13	RBM23 (ENSMLUG00000012923) #14	REM2 (ENSMLUG00000012919) #15	LRP10 (ENSMLUG00000012915) #16	MMP14 (ENSMLUG00000012908) #17	MRPL52 (ENSMLUG00000012904) #18	SLC7A7 (ENSMLUG00000012899) #19	OXA1L (ENSMLUG00000012893) #20	ENSMLUG00000028266	ENSMLUG00000023468	ABHD4 (ENSMLUG00000003815) #21	ENSMLUG00000027893	DAD1 (ENSMLUG00000003801) #22	ENSMLUG00000003366	TRDV3 (ENSMLUG00000025256) #24	ENSMLUG00000027186	ENSMLUG00000025096	TRAV41 (ENSMLUG00000025529) #27	ENSMLUG00000030412 #29	ENSMLUG00000025899	ENSMLUG00000026867 #29	ENSMLUG00000025130 ##27	ENSMLUG00000029316 #37	ENSMLUG00000029296	TRAV29DV5 (ENSMLUG00000030079) ##35	TRDV1 (ENSMLUG00000003798) #37	TRAV26-1 (ENSMLUG00000027997)	TRAV24 (ENSMLUG00000027374)
Megabat	MODERN SPECIES	6843															ABHD4 (ENSPVAG00000010279) #21	DAD1 (ENSPVAG00000010278) #22
Equus	ANCESTRAL SPECIES	45	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.e.a.b	ENSGT01090000260011.B.f	ENSGT01090000260011.B.e.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01100000264510	ENSGT01070000257199	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00940000160147.a #29	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000162840.C #31	ENSGT00940000160147.b #23	ENSGT00940000153073.b.b.b.a.a.g.a.a	ENSGT00940000163717	ENSGT00940000160183.c.c.c ##30	ENSGT00940000163502.b
Donkey	MODERN SPECIES	11	HAUS4 (ENSEASG00005011698) #12	PRMT5 (ENSEASG00005011697) #13	RBM23 (ENSEASG00005011696) #14	REM2 (ENSEASG00005011695) #15	LRP10 (ENSEASG00005011693) #16	MMP14 (ENSEASG00005011691) #17	MRPL52 (ENSEASG00005011690) #18	SLC7A7 (ENSEASG00005011689) #19	OXA1L (ENSEASG00005011687) #20	ENSEASG00005031145	ENSEASG00005036585	ENSEASG00005035945	ENSEASG00005024128	ENSEASG00005025894	ABHD4 (ENSEASG00005011678) #21	ENSEASG00005011676 #22	ENSEASG00005027981	ENSEASG00005033431	ENSEASG00005037177	ENSEASG00005024428	ENSEASG00005011674	ENSEASG00005034676	TRDV3 (ENSEASG00005026598) #24	TRDC (ENSEASG00005011672) #26	ENSEASG00005037114	ENSEASG00005011671	ENSEASG00005028886	ENSEASG00005011670 #29	ENSEASG00005024055 ##35	ENSEASG00005027396 #31	ENSEASG00005011598
Horse	MODERN SPECIES		AJUBA (ENSECAG00000009971) #11	PSMB11 (ENSECAG00000004095)	HAUS4 (ENSECAG00000007197) #12	PRMT5 (ENSECAG00000014516) #13	RBM23 (ENSECAG00000009910) #14	REM2 (ENSECAG00000009873) #15	LRP10 (ENSECAG00000022955) #16	MMP14 (ENSECAG00000008351) #17	MRPL52 (ENSECAG00000000019) #18	SLC7A7 (ENSECAG00000001058) #19	OXA1L (ENSECAG00000015615) #20	ENSECAG00000047830	OR6E1 (ENSECAG00000058804)	ENSECAG00000051878	ABHD4 (ENSECAG00000002199) #21	DAD1 (ENSECAG00000000577) #22	ENSECAG00000035225	ENSECAG00000032324	TRDV3 (ENSECAG00000057927) #24	TRDC (ENSECAG00000028590) #26	ENSECAG00000042547	ENSECAG00000054130	ENSECAG00000032312 #29	ENSECAG00000016803 #29	ENSECAG00000014595 ##35	TRAV34 (ENSECAG00000028919) #31	ENSECAG00000000419 #23	ENSECAG00000059361	ENSECAG00000037353	TRAV24 (ENSECAG00000034386)	ENSECAG00000013643 ##30
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00940000170768	ENSGT01080000258109	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Suina	ANCESTRAL SPECIES	30	ENSGT00940000157841.p #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000166072
Chacoan peccary	MODERN SPECIES	884	ENSCWAG00000020473 #9	C14orf93 (ENSCWAG00000020482) #10	AJUBA (ENSCWAG00000020496) #11	HAUS4 (ENSCWAG00000020523) #12	PRMT5 (ENSCWAG00000020565) #13	RBM23 (ENSCWAG00000020740) #14	REM2 (ENSCWAG00000020754) #15	LRP10 (ENSCWAG00000020768) #16	MMP14 (ENSCWAG00000020783) #17	MRPL52 (ENSCWAG00000020797) #18	SLC7A7 (ENSCWAG00000020831) #19	OXA1L (ENSCWAG00000020858) #20	ENSCWAG00000020864	OR6J1 (ENSCWAG00000020867)	ABHD4 (ENSCWAG00000020875) #21	DAD1 (ENSCWAG00000020889) #22	ENSCWAG00000020911 #26	TRDV3 (ENSCWAG00000020957) #24	ENSCWAG00000003910	TRAV26-1 (ENSCWAG00000003960)	TRAV29DV5 (ENSCWAG00000003985) ##35	ENSCWAG00000004010 #35	ENSCWAG00000004027 ##33	ENSCWAG00000004049 #37	ENSCWAG00000004063 ##27	ENSCWAG00000004084 ##35	ENSCWAG00000004097 #37	ENSCWAG00000004116	ENSCWAG00000004140 ##27	ENSCWAG00000004163 #37	ENSCWAG00000004174 ##27
Pig	MODERN SPECIES	15	C14orf93 (ENSSSCG00000031452) #10	AJUBA (ENSSSCG00000029201) #11	HAUS4 (ENSSSCG00000033178) #12	PRMT5 (ENSSSCG00000030045) #13	RBM23 (ENSSSCG00000026700) #14	REM2 (ENSSSCG00000031874) #15	LRP10 (ENSSSCG00000034465) #16	MMP14 (ENSSSCG00000002039) #17	MRPL52 (ENSSSCG00000002040) #18	SLC7A7 (ENSSSCG00000002041) #19	OXA1L (ENSSSCG00000002042) #20	ENSSSCG00000059245	ENSSSCG00000056092	OR6J1 (ENSSSCG00000002052)	ABHD4 (ENSSSCG00000002051) #21	DAD1 (ENSSSCG00000002050) #22	ENSSSCG00000033721 #23	ENSSSCG00000046912	ENSSSCG00000046018	ENSSSCG00000031641	ENSSSCG00000041741	ENSSSCG00000031495 #24	ENSSSCG00000056250 #26	ENSSSCG00000054641	ENSSSCG00000049724	ENSSSCG00000022057	ENSSSCG00000002062 ##27	ENSSSCG00000042643	ENSSSCG00000056989 ##27	ENSSSCG00000049023 #37	ENSSSCG00000058937 #37
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00940000170768	ENSGT01080000258109	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Camelidae	ANCESTRAL SPECIES	41	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01100000266667	ENSGT00730000111639 #24	ENSGT00940000165951	ENSGT00550000075201 #26	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00900000140957.A.b ##27	ENSGT00940000153130.a.b.a.b #35
Arabian camel	MODERN SPECIES	32	AJUBA (ENSCDRG00005008424) #11	HAUS4 (ENSCDRG00005008205) #12	PRMT5 (ENSCDRG00005007871) #13	ENSCDRG00005007748 #14	REM2 (ENSCDRG00005007658) #15	LRP10 (ENSCDRG00005007477) #16	MRPL52 (ENSCDRG00005007435) #18	MMP14 (ENSCDRG00005007391) #17	ENSCDRG00005007346 #18	SLC7A7 (ENSCDRG00005007288) #19	OXA1L (ENSCDRG00005007183) #20	ENSCDRG00005007166	ENSCDRG00005007140	ENSCDRG00005007127	ABHD4 (ENSCDRG00005007100) #21	DAD1 (ENSCDRG00005007062) #22	ENSCDRG00005007041	ENSCDRG00005007031	ENSCDRG00005007017	ENSCDRG00005007000	ENSCDRG00005006988	TRDV3 (ENSCDRG00005006953) #24	TRDV2 (ENSCDRG00005006905)	ENSCDRG00005006880 #27	ENSCDRG00005006834	ENSCDRG00005006699 #26	TRAV36DV7 (ENSCDRG00005006652) #30	ENSCDRG00005006609	TRAV26-2 (ENSCDRG00005006574) #32	TRAV29DV5 (ENSCDRG00005006547) ##35	ENSCDRG00005006536 ##27
Alpaca	MODERN SPECIES	308													SLC7A7 (ENSVPAG00000005339) #19	OXA1L (ENSVPAG00000005338) #20	ABHD4 (ENSVPAG00000005336) #21	DAD1 (ENSVPAG00000005335) #22
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00940000170768	ENSGT01080000258109	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00940000170768	ENSGT00730000111639 #24	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000160183.c ##30	ENSGT00940000153073.a	ENSGT00940000163398	ENSGT00940000153073.b.a	ENSGT00940000153073.b.b.b.b.`b	ENSGT00940000153130.a.a.b ##35
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00940000170768	ENSGT00730000111639 #24	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072.a	ENSGT00940000166072.b	ENSGT00940000153130.a.b.a.a.b ##35	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000160183.c ##30	ENSGT00940000153073.a	ENSGT00940000163398	ENSGT00940000153073.b.a	ENSGT00940000154455.b.f
Sperm whale	MODERN SPECIES	2	SLC22A17 (ENSPCTG00005014829)	EFS (ENSPCTG00005014279)	IL25 (ENSPCTG00005014086)	CMTM5 (ENSPCTG00005013494)	MYH6 (ENSPCTG00005012858)	C11H14orf93 (ENSPCTG00005012309) #10	ENSPCTG00005012017 #11	ENSPCTG00005011944 #11	ENSPCTG00005011928	HAUS4 (ENSPCTG00005011698) #12	PRMT5 (ENSPCTG00005010346) #13	RBM23 (ENSPCTG00005009497) #14	REM2 (ENSPCTG00005009127) #15	LRP10 (ENSPCTG00005008733) #16	ABHD4 (ENSPCTG00005008569) #21	DAD1 (ENSPCTG00005008536) #22	ENSPCTG00005008496	ENSPCTG00005008402	ENSPCTG00005008314	ENSPCTG00005008242 #24	ENSPCTG00005008075	ENSPCTG00005008021 #27	ENSPCTG00005007941	ENSPCTG00005007885	ENSPCTG00005007799 ##35	ENSPCTG00005007710	TRAV20 (ENSPCTG00005007665) ##30	TRAV17 (ENSPCTG00005007652)	ENSPCTG00005007618	ENSPCTG00005007590 ##35	ENSPCTG00005007577 ##35
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141.i #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072.a	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000153073.a	ENSGT00940000163398	ENSGT00940000153073.b.a	ENSGT00940000154455.b.f	ENSGT00940000163052	ENSGT00940000159469.a.b	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245
Dolphin	MODERN SPECIES	4841															ABHD4 (ENSTTRG00000014523) #21	DAD1 (ENSTTRG00000014522) #22
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141.i #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072.a	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000153073.a	ENSGT00940000163398	ENSGT00940000153073.b.a.j	ENSGT00940000154455.b.f	ENSGT00940000163052	ENSGT00940000159469.a.b	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141.i #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01060000251758	ENSGT00900000140957.B #27	ENSGT00940000163224.a	ENSGT00940000160147.a #29	ENSGT00940000166072.a	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000153073.a	ENSGT00940000163052	ENSGT00940000159469.a.b	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888
Beluga whale	MODERN SPECIES	44	PSMB11 (ENSDLEG00000019969)	PSMB5 (ENSDLEG00000019970) #9	CUNH14orf93 (ENSDLEG00000019974) #10	AJUBA (ENSDLEG00000019978) #11	HAUS4 (ENSDLEG00000019987) #12	PRMT5 (ENSDLEG00000019993) #13	RBM23 (ENSDLEG00000020009) #14	REM2 (ENSDLEG00000020022) #15	LRP10 (ENSDLEG00000020034) #16	MMP14 (ENSDLEG00000020044) #17	SLC7A7 (ENSDLEG00000020052) #19	ENSDLEG00000020066	OXA1L (ENSDLEG00000020068) #20	ENSDLEG00000020073	ABHD4 (ENSDLEG00000010554) #21	DAD1 (ENSDLEG00000010565) #22	ENSDLEG00000010569	ENSDLEG00000010574	ENSDLEG00000010579	ENSDLEG00000010581	TRDV2 (ENSDLEG00000010592)	ENSDLEG00000010605	TRAV41 (ENSDLEG00000010617) #27	TRAV39 (ENSDLEG00000010632)	ENSDLEG00000010662 #29	ENSDLEG00000010668
Narwhal	MODERN SPECIES	308	PSMB5 (ENSMMNG00015011131) #9	C14orf93 (ENSMMNG00015011104) #10	AJUBA (ENSMMNG00015011080) #11	HAUS4 (ENSMMNG00015011037) #12	ENSMMNG00015010912 #13	RBM23 (ENSMMNG00015010808) #14	REM2 (ENSMMNG00015010749) #15	LRP10 (ENSMMNG00015010719) #16	MMP14 (ENSMMNG00015010687) #17	MRPL52 (ENSMMNG00015010642) #18	SLC7A7 (ENSMMNG00015010613) #19	OXA1L (ENSMMNG00015010592) #20	ENSMMNG00015010566	ENSMMNG00015010554	ABHD4 (ENSMMNG00015010536) #21	DAD1 (ENSMMNG00015010510) #22	ENSMMNG00015010503	ENSMMNG00015010496	ENSMMNG00015010494	ENSMMNG00015010481	ENSMMNG00015010465	ENSMMNG00015010449 #27	ENSMMNG00015010435	TRDV2 (ENSMMNG00015010423)	ENSMMNG00015010411	ENSMMNG00015010405	ENSMMNG00015010393	TRAV14DV4 (ENSMMNG00015010385)	ENSMMNG00015010376	TRAV2 (ENSMMNG00015010367)	OR4E2 (ENSMMNG00015010254)
Vaquita	MODERN SPECIES	11	CDH24 (ENSPSNG00000019630) #8	PSMB11 (ENSPSNG00000019602)	PSMB5 (ENSPSNG00000019535) #9	C14orf93 (ENSPSNG00000019391) #10	AJUBA (ENSPSNG00000019351) #11	HAUS4 (ENSPSNG00000019326) #12	PRMT5 (ENSPSNG00000018887) #13	RBM23 (ENSPSNG00000018691) #14	REM2 (ENSPSNG00000018592) #15	LRP10 (ENSPSNG00000018527) #16	MMP14 (ENSPSNG00000018471) #17	MRPL52 (ENSPSNG00000018228) #18	SLC7A7 (ENSPSNG00000018124) #19	OXA1L (ENSPSNG00000018044) #20	ABHD4 (ENSPSNG00000017542) #21	DAD1 (ENSPSNG00000017483) #22	ENSPSNG00000017223 #23	ENSPSNG00000017099	ENSPSNG00000017063	ENSPSNG00000017047	ENSPSNG00000016997	ENSPSNG00000016967	ENSPSNG00000016934	ENSPSNG00000016908	OR4E2 (ENSPSNG00000016023)	SALL2 (ENSPSNG00000015828)	METTL3 (ENSPSNG00000015776)	TOX4 (ENSPSNG00000015667)	RAB2B (ENSPSNG00000015559)	CHD8 (ENSPSNG00000015430)	SUPT16H (ENSPSNG00000015312)
Blue whale	MODERN SPECIES	11	PSMB11 (ENSBMSG00010010746)	PSMB5 (ENSBMSG00010010731) #9	C14orf93 (ENSBMSG00010010696) #10	AJUBA (ENSBMSG00010010676) #11	HAUS4 (ENSBMSG00010010635) #12	PRMT5 (ENSBMSG00010010436) #13	RBM23 (ENSBMSG00010010357) #14	REM2 (ENSBMSG00010010327) #15	LRP10 (ENSBMSG00010010297) #16	MMP14 (ENSBMSG00010010266) #17	MRPL52 (ENSBMSG00010010235) #18	SLC7A7 (ENSBMSG00010010209) #19	OXA1L (ENSBMSG00010010184) #20	ENSBMSG00010010087	ABHD4 (ENSBMSG00010010078) #21	DAD1 (ENSBMSG00010010053) #22	ENSBMSG00010010041 #24	ENSBMSG00010009999 #26	TRAV41 (ENSBMSG00010009961) #27	ENSBMSG00010009948	ENSBMSG00010009934 #30	ENSBMSG00010009925	TRAV20 (ENSBMSG00010009912) ##30	ENSBMSG00010009903	TRAV17 (ENSBMSG00010009898)	ENSBMSG00010009887	ENSBMSG00010009878 ##35	ENSBMSG00010009869 ##35	ENSBMSG00010009852 ##35	TRAV10 (ENSBMSG00010009843)	ENSBMSG00010009837
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.m	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000163708.d	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000162200	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.m	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000163708.d	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695
Siberian musk deer	MODERN SPECIES	71	RBM23 (ENSMMSG00000003104) #14	REM2 (ENSMMSG00000003202) #15	LRP10 (ENSMMSG00000003220) #16	MMP14 (ENSMMSG00000003242) #17	MRPL52 (ENSMMSG00000003274) #18	SLC7A7 (ENSMMSG00000003307) #19	OXA1L (ENSMMSG00000003331) #20	ENSMMSG00000003356	ENSMMSG00000003366	ENSMMSG00000003376	ENSMMSG00000003399	ENSMMSG00000003410	ENSMMSG00000003418	ENSMMSG00000003428	ABHD4 (ENSMMSG00000003438) #21	DAD1 (ENSMMSG00000003453) #22	ENSMMSG00000003477	TRDV3 (ENSMMSG00000003515) #24	ENSMMSG00000003520 #26	TRDV2 (ENSMMSG00000003533)	ENSMMSG00000003541	ENSMMSG00000003561 ##33	ENSMMSG00000003570 ##35	ENSMMSG00000003577 ##27	ENSMMSG00000003582 ##35	ENSMMSG00000003592 ##35	ENSMMSG00000003604 #35	ENSMMSG00000003616 ##27	ENSMMSG00000003629	ENSMMSG00000003639 #37	ENSMMSG00000003645
Bovidae	ANCESTRAL SPECIES	7	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.m.b	ENSGT01090000260011.B.m.a	ENSGT01090000260011.B.n	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000163708.d	ENSGT01080000258109	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00940000166072	ENSGT00940000160183.d.a #30	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b.c ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000162998.a	ENSGT00900000140957.A.a.b.s.a.b.c.a ##27	ENSGT00940000161790.c.a.a.b #37	ENSGT00900000140957.A.a.b.s.a.a.a ##27
Bovinae	ANCESTRAL SPECIES	33	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.m.b.b	ENSGT01090000260011.B.m.a	ENSGT01090000260011.B.n	ENSGT00390000006178.s.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000163708.d	ENSGT00980000201440	ENSGT01060000251169	ENSGT01080000258412	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00940000153130.a.b.b.b ##35	ENSGT00940000166072.c.a
Bos	ANCESTRAL SPECIES	31	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.m.b.b	ENSGT01090000260011.B.m.a.a.b	ENSGT01090000260011.B.m.b.a	ENSGT01090000260011.B.m.a.a.a	ENSGT01090000260011.B.n	ENSGT00390000006178.s.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000163708.d	ENSGT00980000201440	ENSGT01060000251169	ENSGT00940000153130.a.b.b.b ##35	ENSGT00940000166072.c.a	ENSGT00940000153130.a.a.a.c.b.d ##35	ENSGT00900000140957.A.b.d ##27	ENSGT00940000153130.a.a.a.c.b.c.c.b ##35	ENSGT00900000140957.A.b.c ##27	ENSGT00940000153130.a.a.a.c.b.c.d ##35	ENSGT00940000153130.a.b.a.b #35	ENSGT00940000162998.a.f	ENSGT00940000161790.d.b #37	ENSGT00940000153073.b.b.b.a.a.d	ENSGT00940000161790.c.a.a.b.a.a #37
Bos_a	ANCESTRAL SPECIES	40	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.n	ENSGT01090000260011.B.m.a.a.b	ENSGT00390000006178.s.b	ENSGT00950000183087.A.a.a.a.b.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00980000201440	ENSGT01060000251169
Domestic yak	MODERN SPECIES	2	HAUS4 (ENSBGRG00000005108) #12	PRMT5 (ENSBGRG00000004439) #13	RBM23 (ENSBGRG00000004216) #14	REM2 (ENSBGRG00000004119) #15	LRP10 (ENSBGRG00000004081) #16	MMP14 (ENSBGRG00000004010) #17	MRPL52 (ENSBGRG00000003895) #18	SLC7A7 (ENSBGRG00000003777) #19	OXA1L (ENSBGRG00000003716) #20	ENSBGRG00000003690	ENSBGRG00000003678	ENSBGRG00000003650	ENSBGRG00000003626	ENSBGRG00000008380	ABHD4 (ENSBGRG00000008271) #21	DAD1 (ENSBGRG00000008204) #22	ENSBGRG00000008175	ENSBGRG00000008164	ENSBGRG00000008157	ENSBGRG00000008146	ENSBGRG00000008096	TRDC (ENSBGRG00000008065) #26	ENSBGRG00000008054	TRDV2 (ENSBGRG00000008028)	ENSBGRG00000008013	ENSBGRG00000008000	ENSBGRG00000007987	ENSBGRG00000007977 ##35	ENSBGRG00000007946 ##35	ENSBGRG00000007933 ##27	ENSBGRG00000007915 ##35
Wild yak	MODERN SPECIES	723	C14orf93 (ENSBMUG00000018246) #10	AJUBA (ENSBMUG00000018267) #11	HAUS4 (ENSBMUG00000018324) #12	PRMT5 (ENSBMUG00000018509) #13	RBM23 (ENSBMUG00000018668) #14	REM2 (ENSBMUG00000018707) #15	LRP10 (ENSBMUG00000018763) #16	MMP14 (ENSBMUG00000018824) #17	MRPL52 (ENSBMUG00000018880) #18	SLC7A7 (ENSBMUG00000018917) #19	OXA1L (ENSBMUG00000018974) #20	ENSBMUG00000018990	ENSBMUG00000019005	ENSBMUG00000019015	ABHD4 (ENSBMUG00000019028) #21	DAD1 (ENSBMUG00000019046) #22	ENSBMUG00000019081	ENSBMUG00000019107	ENSBMUG00000019123	ENSBMUG00000019142	ENSBMUG00000019162	ENSBMUG00000019180 #26	ENSBMUG00000019192
Bos_b	ANCESTRAL SPECIES	28	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.m.b.b	ENSGT01090000260011.B.m.a.a.b	ENSGT01090000260011.B.m.b.a	ENSGT01090000260011.B.m.a.a.a	ENSGT01090000260011.B.n	ENSGT00390000006178.s.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000163708.d	ENSGT00980000201440	ENSGT01080000258412	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00940000165763.d.a	ENSGT00940000166072.c.a.a	ENSGT00940000166072.c.a.b	ENSGT00940000153130.a.a.a.c.b.d ##35	ENSGT00900000140957.A.b.d ##27	ENSGT00940000153130.a.a.a.c.b.c.c.b ##35	ENSGT00900000140957.A.b.c ##27	ENSGT00940000153130.a.a.a.c.b.c.d ##35
Hybrid Bos Indicus	MODERN SPECIES	1	MMP14 (ENSBIXG00005024467) #17	MRPL52 (ENSBIXG00005024443) #18	SLC7A7 (ENSBIXG00005024321) #19	ENSBIXG00005006520	OXA1L (ENSBIXG00005024237) #20	ENSBIXG00005024155	ENSBIXG00005004126	ENSBIXG00005007079	ENSBIXG00005024084	ENSBIXG00005024078	ENSBIXG00005024069	ENSBIXG00005024043	ENSBIXG00005024036	ENSBIXG00005024022	ABHD4 (ENSBIXG00005004108) #21	DAD1 (ENSBIXG00005006908) #22	ENSBIXG00005023919	ENSBIXG00005007390	ENSBIXG00005006841	ENSBIXG00005023891	ENSBIXG00005023885	ENSBIXG00005023877	ENSBIXG00005023869	ENSBIXG00005005559	ENSBIXG00005023853	ENSBIXG00005023845	ENSBIXG00005004084	ENSBIXG00005023831	ENSBIXG00005023825	ENSBIXG00005004081	ENSBIXG00005023810
Cow	MODERN SPECIES	1	PRMT5 (ENSBTAG00000010890) #13	RBM23 (ENSBTAG00000038333) #14	REM2 (ENSBTAG00000016381) #15	LRP10 (ENSBTAG00000016378) #16	MMP14 (ENSBTAG00000014824) #17	MRPL52 (ENSBTAG00000014822) #18	SLC7A7 (ENSBTAG00000014821) #19	OXA1L (ENSBTAG00000014820) #20	OR6E1D (ENSBTAG00000052080)	OR6E1B (ENSBTAG00000052423)	OR6E1C (ENSBTAG00000054564)	OR6E1 (ENSBTAG00000050326)	OR6E1E (ENSBTAG00000051691)	ENSBTAG00000009274	ABHD4 (ENSBTAG00000016658) #21	DAD1 (ENSBTAG00000019077) #22	ENSBTAG00000000432	ENSBTAG00000054785	ENSBTAG00000050828	ENSBTAG00000050128	ENSBTAG00000051261	ENSBTAG00000055197 #26	ENSBTAG00000054106	ENSBTAG00000049900	ENSBTAG00000049803	ENSBTAG00000049985	ENSBTAG00000052267	ENSBTAG00000054833 ##27	ENSBTAG00000050913	ENSBTAG00000047690 ##35	ENSBTAG00000054417
American bison	MODERN SPECIES	3371	RBM23 (ENSBBBG00000006214) #14	REM2 (ENSBBBG00000008315) #15	LRP10 (ENSBBBG00000000301) #16	MMP14 (ENSBBBG00000023905) #17	MRPL52 (ENSBBBG00000023959) #18	SLC7A7 (ENSBBBG00000024018) #19	OXA1L (ENSBBBG00000024118) #20	ENSBBBG00000024134	ENSBBBG00000024137	ENSBBBG00000008981	ENSBBBG00000024153	ENSBBBG00000008646	ENSBBBG00000024170	ENSBBBG00000024178	ABHD4 (ENSBBBG00000008871) #21	DAD1 (ENSBBBG00000024198) #22	ENSBBBG00000006296	ENSBBBG00000024207	ENSBBBG00000024211	ENSBBBG00000008989	ENSBBBG00000024219	ENSBBBG00000024222 #27	ENSBBBG00000024277	ENSBBBG00000024285 ##33	ENSBBBG00000024291 ##35	TRAV26-2 (ENSBBBG00000024297) #32	ENSBBBG00000006330 ##35	ENSBBBG00000024310 #35	ENSBBBG00000024315 #37	ENSBBBG00000008826	ENSBBBG00000006336 ##35
Caprinae	ANCESTRAL SPECIES	30	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.m.b	ENSGT01090000260011.B.m.a	ENSGT01090000260011.B.n	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000163708.d	ENSGT01080000258109	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000166072	ENSGT00940000153130.a.a.a.c.b.d ##35	ENSGT00940000162524.A #32	ENSGT00940000153130.a.a.a.c.b.c ##35	ENSGT00900000140957.A.a.b.t.a ##27	ENSGT00940000163717	ENSGT00940000153130.a.a.a.c.a.u ##35	ENSGT00900000140957.A.a.b.s.a.b.d ##27	ENSGT00900000140957.A.a.b.s.b.c.a ##27	ENSGT00940000153073.a.k.b.b.c.a.a
Goat	MODERN SPECIES	1	ENSCHIG00000024418	PSMB5 (ENSCHIG00000011511) #9	C14orf93 (ENSCHIG00000021325) #10	AJUBA (ENSCHIG00000025926) #11	HAUS4 (ENSCHIG00000019264) #12	PRMT5 (ENSCHIG00000016954) #13	REM2 (ENSCHIG00000012090) #15	LRP10 (ENSCHIG00000003799) #16	RBM23 (ENSCHIG00000025709) #14	MMP14 (ENSCHIG00000011010) #17	MRPL52 (ENSCHIG00000014047) #18	SLC7A7 (ENSCHIG00000022436) #19	OXA1L (ENSCHIG00000022345) #20	ENSCHIG00000013184	ABHD4 (ENSCHIG00000005601) #21	DAD1 (ENSCHIG00000017326) #22	ENSCHIG00000012503	TRDC (ENSCHIG00000024517) #26	TRAV36DV7 (ENSCHIG00000015670) #30	TRAV26-2 (ENSCHIG00000014121) #32	TRAV29DV5 (ENSCHIG00000014189) ##35	ENSCHIG00000012575 ##27	ENSCHIG00000006374	ENSCHIG00000013268 ##27	ENSCHIG00000017647	ENSCHIG00000014547 ##27	ENSCHIG00000012600 ##27	ENSCHIG00000007939	ENSCHIG00000013389 ##27	ENSCHIG00000017339 ##27	ENSCHIG00000025281 ##27
Rambouillet Sheep	MODERN SPECIES	23	C14orf93 (ENSOARG00020017179) #10	AJUBA (ENSOARG00020017465) #11	HAUS4 (ENSOARG00020017603) #12	PRMT5 (ENSOARG00020017830) #13	RBM23 (ENSOARG00020019058) #14	REM2 (ENSOARG00020019163) #15	LRP10 (ENSOARG00020019221) #16	MMP14 (ENSOARG00020009862) #17	MRPL52 (ENSOARG00020010106) #18	SLC7A7 (ENSOARG00020010417) #19	OXA1L (ENSOARG00020010686) #20	ENSOARG00020010800	ENSOARG00020010842	ENSOARG00020010895	ABHD4 (ENSOARG00020011057) #21	DAD1 (ENSOARG00020011202) #22	ENSOARG00020011258	ENSOARG00020011394	ENSOARG00020011409	ENSOARG00020011425	ENSOARG00020011448	TRDV3 (ENSOARG00020011466) #24	TRDC (ENSOARG00020011494) #26	TRDV2 (ENSOARG00020011567)	ENSOARG00020011603	ENSOARG00020011623 ##35	TRAV26-2 (ENSOARG00020011648) #32	ENSOARG00020011683 ##35	ENSOARG00020011730	ENSOARG00020011757 ##35	ENSOARG00020011792
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	28	ENSCHYG00000024022	ANAPC11 (ENSCHYG00000024045)	ENSCHYG00000024063	P4HB (ENSCHYG00000024081)	PPP1R27 (ENSCHYG00000024219)	MCRIP1 (ENSCHYG00000024250)	GCGR (ENSCHYG00000024352)	SLC25A10 (ENSCHYG00000024415)	MRPL12 (ENSCHYG00000024470)	HGS (ENSCHYG00000024504)	ARL16 (ENSCHYG00000024567)	CCDC137 (ENSCHYG00000024590)	OXLD1 (ENSCHYG00000005913)	ENSCHYG00000005931	TSPAN10 (ENSCHYG00000006021)	ENSCHYG00000006202 #22	NPLOC4 (ENSCHYG00000006240)	ENSCHYG00000006321	FAAP100 (ENSCHYG00000006343)	FSCN2 (ENSCHYG00000006437)	ACTG1 (ENSCHYG00000006481)	BAHCC1 (ENSCHYG00000006566)	SLC38A10 (ENSCHYG00000006821)	NDUFAF8 (ENSCHYG00000006983)	TEPSIN (ENSCHYG00000007009)	CEP131 (ENSCHYG00000007067)	PVALEF (ENSCHYG00000007265)	AATK (ENSCHYG00000007314)	BAIAP2 (ENSCHYG00000007498)	CHMP6 (ENSCHYG00000007924)	RPTOR (ENSCHYG00000008045)
Yarkand deer	MODERN SPECIES	3	ENSCHYG00000016436 #9	C14orf93 (ENSCHYG00000016592) #10	AJUBA (ENSCHYG00000016731) #11	HAUS4 (ENSCHYG00000016879) #12	PRMT5 (ENSCHYG00000017109) #13	RBM23 (ENSCHYG00000018246) #14	REM2 (ENSCHYG00000018358) #15	LRP10 (ENSCHYG00000018426) #16	MMP14 (ENSCHYG00000018620) #17	SLC7A7 (ENSCHYG00000018767) #19	ENSCHYG00000018959 #18	OXA1L (ENSCHYG00000019267) #20	ENSCHYG00000019500	ENSCHYG00000019651	ABHD4 (ENSCHYG00000019707) #21	ENSCHYG00000019819 #22	ENSCHYG00000019884	TRDV3 (ENSCHYG00000020003) #24	ENSCHYG00000009457 #26	TRDV2 (ENSCHYG00000009486)	ENSCHYG00000009499	OR4E1 (ENSCHYG00000009527)	OR4E2 (ENSCHYG00000009552)	ENSCHYG00000009578	OR10G3 (ENSCHYG00000009604)	ENSCHYG00000009619	SALL2 (ENSCHYG00000009676)	METTL3 (ENSCHYG00000009777)	TOX4 (ENSCHYG00000009949)	ENSCHYG00000010144	CHD8 (ENSCHYG00000010268)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000003324 #22
Common shrew	MODERN SPECIES	2013																DAD1 (ENSSARG00000001624) #22	ENSSARG00000001615	ENSSARG00000001589 #37
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	2709																DAD1 (ENSEEUG00000008180) #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	14367																ENSEEUG00000006924 #22
Hedgehog	MODERN SPECIES	15805																ENSEEUG00000001114 #22
Atlantogenata	ANCESTRAL SPECIES	55	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000160183.d #30	ENSGT00900000140957.C ##27	ENSGT00940000162524.A #32	ENSGT00940000165763	ENSGT00940000162840.D #33	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Xenarthra	ANCESTRAL SPECIES	10	ENSGT00940000157841 #9	ENSGT00390000012708.a #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000164554	ENSGT01050000245453	ENSGT00550000075201 #26	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.B #27	ENSGT00940000160147.a #29	ENSGT00940000160183.d #30	ENSGT00900000140957.C ##27	ENSGT00940000162524.A #32	ENSGT00940000165763	ENSGT00940000162524.B ##32	ENSGT00940000162840.A ##33	ENSGT00940000163717	ENSGT00940000153130.a.a.a.c.a ##35
Sloth	MODERN SPECIES	2332																DAD1 (ENSCHOG00000004754) #22
Armadillo	MODERN SPECIES	3264	AJUBA (ENSDNOG00000045223) #11	PRMT5 (ENSDNOG00000002572) #13	RBM23 (ENSDNOG00000032457) #14	REM2 (ENSDNOG00000024210) #15	LRP10 (ENSDNOG00000045291) #16	MMP14 (ENSDNOG00000008414) #17	MRPL52 (ENSDNOG00000032713) #18	SLC7A7 (ENSDNOG00000001129) #19	OXA1L (ENSDNOG00000001130) #20	ENSDNOG00000036263	ENSDNOG00000043711	ENSDNOG00000040673	ENSDNOG00000046715	OR6J1 (ENSDNOG00000015928)	ABHD4 (ENSDNOG00000011575) #21	DAD1 (ENSDNOG00000033306) #22	ENSDNOG00000032905	TRAJ18 (ENSDNOG00000044553)	ENSDNOG00000030724	TRDC (ENSDNOG00000046057) #26	ENSDNOG00000030719	ENSDNOG00000048574	TRAV41 (ENSDNOG00000049608) #27	ENSDNOG00000040273 #29	ENSDNOG00000033466 #29	ENSDNOG00000032752 #30	ENSDNOG00000037373 ##27	TRAV26-2 (ENSDNOG00000040277) #32	ENSDNOG00000041554	ENSDNOG00000047983 ##35	ENSDNOG00000037515 ##27
Afrotheria	ANCESTRAL SPECIES	68	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00940000165951	ENSGT00940000160147.a #29	ENSGT00900000140957.A.b ##27	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Afrotheria_a	ANCESTRAL SPECIES	66	ENSGT00940000157841.jb #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT00940000165951	ENSGT00940000160147.a #29	ENSGT00900000140957.A.b ##27	ENSGT00940000153130.a.a.a.c.b ##35	ENSGT00940000153130.a.b.a.b #35
Elephant	MODERN SPECIES	11	AJUBA (ENSLAFG00000026749) #11	HAUS4 (ENSLAFG00000012956) #12	PRMT5 (ENSLAFG00000004859) #13	RBM23 (ENSLAFG00000018567) #14	REM2 (ENSLAFG00000002216) #15	LRP10 (ENSLAFG00000028518) #16	MMP14 (ENSLAFG00000002214) #17	MRPL52 (ENSLAFG00000004118) #18	SLC7A7 (ENSLAFG00000004114) #19	OXA1L (ENSLAFG00000026128) #20	ENSLAFG00000028204	ENSLAFG00000029813	ENSLAFG00000032265	OR6J1 (ENSLAFG00000026476)	ABHD4 (ENSLAFG00000000661) #21	DAD1 (ENSLAFG00000000667) #22	TRAC (ENSLAFG00000029692) #23	TRDV3 (ENSLAFG00000032133) #24	TRDV2 (ENSLAFG00000032114)	ENSLAFG00000031182 #29	TRAV26-2 (ENSLAFG00000031190) ##32	ENSLAFG00000026269 ##35	ENSLAFG00000028502 ##27	ENSLAFG00000025859 ##27	ENSLAFG00000028499 ##35	ENSLAFG00000029500 #35	ENSLAFG00000030305	ENSLAFG00000031696 ##35	ENSLAFG00000032770	TRAV21 (ENSLAFG00000028141)	ENSLAFG00000028749
Hyrax	MODERN SPECIES	11185																DAD1 (ENSPCAG00000016207) #22
Tenrec	MODERN SPECIES	2597																DAD1 (ENSETEG00000006310) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.bb.a.b.a	ENSGT01090000260086.A.c.a.b.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147.b #23	ENSGT00730000111639 #24	ENSGT01030000235488	ENSGT00940000165951	ENSGT00940000164778	ENSGT00900000140957.D.a.b.b.b ##27	ENSGT00900000140957.D.a.b.b.a.a ##27	ENSGT00900000140957.D.a.b.a ##27	ENSGT00900000140957.D.b ##27	ENSGT00940000162998.a	ENSGT00940000153130.a.b.d #35	ENSGT00940000153073.b.b.a.b	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275
Opossum	MODERN SPECIES		AJUBA (ENSMODG00000034930) #11	PRMT5 (ENSMODG00000005204) #13	RBM23 (ENSMODG00000024448) #14	REM2 (ENSMODG00000005212) #15	LRP10 (ENSMODG00000005233) #16	MMP14 (ENSMODG00000005279) #17	ENSMODG00000041569 #18	ENSMODG00000005329 #19	OXA1L (ENSMODG00000005347) #20	ENSMODG00000005352	ENSMODG00000005397	ENSMODG00000005457	ENSMODG00000005467	ENSMODG00000025734	ABHD4 (ENSMODG00000005609) #21	DAD1 (ENSMODG00000005619) #22	ENSMODG00000005630 #23	ENSMODG00000005637 #24	ENSMODG00000046846	ENSMODG00000029578	ENSMODG00000005661	ENSMODG00000005670 ##27	ENSMODG00000042554 ##27	ENSMODG00000027352 ##27	ENSMODG00000024454 ##27	ENSMODG00000024455 ##27	ENSMODG00000041615 ##27	ENSMODG00000005680	ENSMODG00000050975 #35	ENSMODG00000043724	ENSMODG00000046100
Marsupialia_b	DUPLICATION
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000003324.a #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000003324.a #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000003324.a #22
Common wonbat	MODERN SPECIES	1107	C14orf93 (ENSVURG00010020627) #10	AJUBA (ENSVURG00010020619) #11	HAUS4 (ENSVURG00010020603) #12	PRMT5 (ENSVURG00010020586) #13	RBM23 (ENSVURG00010020558) #14	REM2 (ENSVURG00010020549) #15	LRP10 (ENSVURG00010020541) #16	MMP14 (ENSVURG00010020534) #17	MRPL52 (ENSVURG00010020527) #18	SLC7A7 (ENSVURG00010020520) #19	OXA1L (ENSVURG00010020513) #20	ENSVURG00010020503	ENSVURG00010020498	ENSVURG00010020494	ABHD4 (ENSVURG00010020492) #21	ENSVURG00010020482 #22	ENSVURG00010020479	ENSVURG00010020474	ENSVURG00010020467	ENSVURG00010020463	ENSVURG00010020459	ENSVURG00010020457	ENSVURG00010020453 ##27	ENSVURG00010020449 ##27	ENSVURG00010020445 ##27	ENSVURG00010020443 ##27	ENSVURG00010020441 ##27	ENSVURG00010020440 ##27	ENSVURG00010020434 ##27	ENSVURG00010020427 ##27	ENSVURG00010020420 ##27
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.bb.a.b.a	ENSGT01090000260086.A.c.a.b.b	ENSGT00390000016277.b #21	ENSGT00390000003324.b #22	ENSGT00940000160147.b #23	ENSGT01030000235488	ENSGT00900000140957.D.a.b.a.a.a ##27	ENSGT00900000140957.D.a.b.b.b ##27	ENSGT00900000140957.D.a.b.a.a.b ##27	ENSGT00900000140957.D.a.b.b.a.a ##27	ENSGT00900000140957.D.a.b.a.b ##27	ENSGT00900000140957.B.a #27	ENSGT00900000140957.D.b ##27	ENSGT00940000162998.a	ENSGT00940000153130.a.b.d #35	ENSGT00940000153073.b.b.a.b	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275
Tasmanian devil	MODERN SPECIES	1	RBM23 (ENSSHAG00000012932) #14	REM2 (ENSSHAG00000012846) #15	LRP10 (ENSSHAG00000012773) #16	MMP14 (ENSSHAG00000012576) #17	ENSSHAG00000029770 #18	SLC7A7 (ENSSHAG00000012222) #19	OXA1L (ENSSHAG00000012179) #20	ENSSHAG00000020622	ENSSHAG00000011864	ENSSHAG00000031813	ENSSHAG00000030370	ENSSHAG00000021988	ENSSHAG00000030903	ENSSHAG00000010845	ABHD4 (ENSSHAG00000010507) #21	DAD1 (ENSSHAG00000010354) #22	ENSSHAG00000028106 #23	ENSSHAG00000022618	ENSSHAG00000026835	ENSSHAG00000023697	ENSSHAG00000025868	ENSSHAG00000031452	ENSSHAG00000023376	ENSSHAG00000029458	ENSSHAG00000029367	ENSSHAG00000027471	ENSSHAG00000020747	ENSSHAG00000021022	ENSSHAG00000023071	ENSSHAG00000025236	ENSSHAG00000030476
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.bb.a.b.a	ENSGT01090000260086.A.c.a.b.b	ENSGT00390000016277.b #21	ENSGT00390000003324.b #22	ENSGT00940000160147.b #23	ENSGT01030000235488	ENSGT00900000140957.D.a.b.a.a.a ##27	ENSGT00900000140957.D.a.b.a.a.b ##27	ENSGT00900000140957.D.a.b.b.b ##27	ENSGT00900000140957.D.a.b.b.a.a ##27	ENSGT00900000140957.D.a.b.a.b ##27	ENSGT00900000140957.B.a #27	ENSGT00900000140957.D.b ##27	ENSGT00940000162998.a	ENSGT00940000163224.a.d	ENSGT00900000140957.A ##27	ENSGT00940000163507.x.a.a	ENSGT00940000153073.a.q	ENSGT00940000163507.x.a.b
Wallaby	MODERN SPECIES	3524																DAD1 (ENSMEUG00000005196) #22
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000157841 #9	ENSGT00390000012708 #10	ENSGT00940000160978 #11	ENSGT00390000014634 #12	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT01090000260011.B.bb.a.b.a	ENSGT01090000260086.A.c.a.b.b	ENSGT00390000016277.b #21	ENSGT00390000003324.b #22	ENSGT00940000160147.b #23	ENSGT01030000235488	ENSGT01020000230358.b	ENSGT00940000165951	ENSGT00900000140957.D.a.b.a.a.a ##27	ENSGT00900000140957.D.a.b.b.b.b.a ##27	ENSGT00900000140957.D.a.b.a.a.b.a ##27	ENSGT00900000140957.D.a.b.b.b.a.a ##27	ENSGT00900000140957.D.a.b.b.b.b.b ##27	ENSGT00900000140957.D.a.b.a.a.b.b ##27	ENSGT00900000140957.D.a.b.b.b.a.b ##27	ENSGT00900000140957.D.a.b.b.a.a ##27	ENSGT00900000140957.D.a.b.a.b ##27	ENSGT00900000140957.B.a #27	ENSGT00900000140957.D.b ##27
koala	MODERN SPECIES		PSMB5 (ENSPCIG00000033625) #9	C14orf93 (ENSPCIG00000027769) #10	AJUBA (ENSPCIG00000027770) #11	HAUS4 (ENSPCIG00000027771) #12	PRMT5 (ENSPCIG00000027772) #13	RBM23 (ENSPCIG00000027773) #14	REM2 (ENSPCIG00000027774) #15	LRP10 (ENSPCIG00000027775) #16	MMP14 (ENSPCIG00000027776) #17	MRPL52 (ENSPCIG00000027777) #18	SLC7A7 (ENSPCIG00000027778) #19	OXA1L (ENSPCIG00000027779) #20	ENSPCIG00000034713	OR6J1 (ENSPCIG00000027780)	ENSPCIG00000027781 #21	DAD1 (ENSPCIG00000027783) #22	ENSPCIG00000027784 #23	ENSPCIG00000027785	ENSPCIG00000027787	ENSPCIG00000035385	ENSPCIG00000035739 ##27	ENSPCIG00000027795 ##27	ENSPCIG00000027798 ##27	ENSPCIG00000027794 ##27	ENSPCIG00000023447 ##27	ENSPCIG00000031136 ##27	ENSPCIG00000023446 ##27	ENSPCIG00000007376 ##27	ENSPCIG00000027801 ##27	ENSPCIG00000027805 ##27	ENSPCIG00000027806 #27
Common wonbat	MODERN SPECIES	297																ENSVURG00010019874 #22
Platypus	MODERN SPECIES	4	CDH24 (ENSOANG00000041564) #8	PSMB11 (ENSOANG00000004543)	PSMB5 (ENSOANG00000004542) #9	C14orf93 (ENSOANG00000010719) #10	ENSOANG00000010720 #11	HAUS4 (ENSOANG00000010721) #12	PRMT5 (ENSOANG00000008909) #13	RBM23 (ENSOANG00000038905) #14	REM2 (ENSOANG00000003911) #15	LRP10 (ENSOANG00000003912) #16	MMP14 (ENSOANG00000003915) #17	ENSOANG00000046741	SLC7A7 (ENSOANG00000010722) #19	OXA1L (ENSOANG00000010724) #20	ABHD4 (ENSOANG00000010726) #21	DAD1 (ENSOANG00000041339) #22	TRDV3 (ENSOANG00000010728) #24	ENSOANG00000010727	ENSOANG00000036084	ENSOANG00000010729	ENSOANG00000036905	ENSOANG00000042446	ENSOANG00000009886	ENSOANG00000010730	ENSOANG00000010750	ENSOANG00000010752	ENSOANG00000049059 #35	ENSOANG00000010738	ENSOANG00000047627	ENSOANG00000010734	ENSOANG00000050866
Sauria	ANCESTRAL SPECIES	36	ENSGT00390000005996	ENSGT00940000160537	ENSGT00500000044922	ENSGT00390000001141 #13	ENSGT00940000162546 #14	ENSGT00940000160062 #15	ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00940000163076	ENSGT00940000162793.a	ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT01100000263537.a	ENSGT00940000153402	ENSGT00390000000337	ENSGT00960000190002
Lepidosauria	ANCESTRAL SPECIES	106							ENSGT01030000234536.b.a.b.b.b.a	ENSGT01050000244936.d	ENSGT00940000163847.e.a.b	ENSGT01030000234536.a.d.b.a	ENSGT00940000163847.e.b	ENSGT01030000234536.a.d.a.a	ENSGT00940000163847.f	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147 #29	ENSGT00940000154455	ENSGT00940000153073.f	ENSGT00940000162998	ENSGT00940000163224.b	ENSGT00940000163058.a	ENSGT00940000163058.b	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A
Episquamata	ANCESTRAL SPECIES	5						ENSGT01030000234536.b.a.b.b.b.a	ENSGT01050000244936.d.t.a	ENSGT00940000163847.e.a.b	ENSGT01030000234536.a.d.b.a.a.a.b	ENSGT01030000234536.a.d.a.a.a.b.a	ENSGT00940000163847.e.b	ENSGT01030000234536.a.d.a.a.a.b.b.b.b	ENSGT00940000163847.f	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000153073.f.a.a.b.a	ENSGT01030000235661	ENSGT00940000163058.a	ENSGT00940000163058.b	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.`b.a	ENSGT00940000153886.a.a	ENSGT00940000153649.B	ENSGT00390000014495	ENSGT00520000055620.A.c	ENSGT01100000263537.a	ENSGT00940000153402	ENSGT00940000153118.db.b
Laterata	ANCESTRAL SPECIES	24											ENSGT01090000260011.A.b.a.b	ENSGT01090000260011.A.b.a.a	ENSGT01090000260086.B.d.a.a.a	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000160147 #29	ENSGT00940000153073.f.a.b	ENSGT00940000162998	ENSGT00940000163224.b	ENSGT00960000189404	ENSGT01050000244869.a.a.b.i	ENSGT01050000244869.a.a.a.a.b	ENSGT01050000244869.a.a.a.a.a.b.c	ENSGT01050000244869.a.a.a.a.a.a	ENSGT01050000244869.a.a.a.a.a.b.d	ENSGT00940000163058.a	ENSGT00940000163058.b	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058
Argentine black and white tegu	MODERN SPECIES	38	ENSSMRG00000004894	ENSSMRG00000004899	ENSSMRG00000004902	ENSSMRG00000004906	ENSSMRG00000004910	ENSSMRG00000004914	ENSSMRG00000004915	ENSSMRG00000004938	ENSSMRG00000004961	ENSSMRG00000004963	ENSSMRG00000004967	ENSSMRG00000004971	ENSSMRG00000004974	OR6J1 (ENSSMRG00000004977)	ABHD4 (ENSSMRG00000004979) #21	DAD1 (ENSSMRG00000004984) #22	ENSSMRG00000004987 #29	ENSSMRG00000005053	ENSSMRG00000005062	ENSSMRG00000005065	ENSSMRG00000005071	TRAV18 (ENSSMRG00000005076)	ENSSMRG00000005082	ENSSMRG00000005087	ENSSMRG00000005089	ENSSMRG00000005094	ENSSMRG00000005100	ENSSMRG00000005148	ENSSMRG00000005151	ENSSMRG00000005153	ENSSMRG00000005158
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000020397	ENSPMRG00000020391	ENSPMRG00000020387	ENSPMRG00000020385	ENSPMRG00000020382	ENSPMRG00000020379	ENSPMRG00000020376	ENSPMRG00000020373	ENSPMRG00000020371	ENSPMRG00000020369	ENSPMRG00000020363	ENSPMRG00000014164	ENSPMRG00000014163	OR6J1 (ENSPMRG00000014157)	ABHD4 (ENSPMRG00000014142) #21	DAD1 (ENSPMRG00000014132) #22	ENSPMRG00000014114	ENSPMRG00000014101	ENSPMRG00000014096	ENSPMRG00000014093	ENSPMRG00000014087	ENSPMRG00000014081	ENSPMRG00000014077	ENSPMRG00000014069	ENSPMRG00000014059	ENSPMRG00000014049	ENSPMRG00000014041	ENSPMRG00000014037	ENSPMRG00000014028	ENSPMRG00000014018	ENSPMRG00000014013
Toxicofera	ANCESTRAL SPECIES	56											ENSGT01030000234536.a.d.a.a.a.b.a	ENSGT00940000163847.e.b	ENSGT01030000234536.a.d.a.a.a.b.b.b.b	ENSGT00940000163847.f	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000153073.f.a.a.b.a	ENSGT00940000171353	ENSGT00940000154455	ENSGT00940000153073.f.b.b	ENSGT00940000162998.l.a	ENSGT01030000235661	ENSGT00940000162998.l.b	ENSGT00940000153073.f.a.a.b.b	ENSGT00940000153073.f.b.a	ENSGT00940000153073.f.a.a.a	ENSGT00960000189462	ENSGT00990000208783	ENSGT00960000189404	ENSGT01050000244869.a.a.b.i	ENSGT01050000244869.a.a.a.a.b
Elapidae	ANCESTRAL SPECIES	53								ENSGT01090000260086.D.e	ENSGT01090000260086.D.f.a.b	ENSGT00960000190006	ENSGT01090000260011.A.b.a.a	ENSGT01090000260011.A.b.a.b.b	ENSGT01090000260011.A.b.a.b.a	ENSGT01090000260011.A.b.b.c	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00940000153073.f.a.a.b.a	ENSGT00960000189462.a.a.a.b.b	ENSGT00960000189462.a.a.b	ENSGT00940000153073.f.a.a.a.a.b.a	ENSGT00960000189462.a.a.a.b.a	ENSGT01090000260086.D.f.a.a.c.a	ENSGT00960000189404.a.a	ENSGT00960000189404.a.b.a	ENSGT00960000189404.b	ENSGT01050000244869.a.a.b.i	ENSGT01050000244869.a.a.a.a.b	ENSGT01050000244869.a.a.a.a.a.b.b.b	ENSGT01050000244869.a.a.a.a.a.b.a.a	ENSGT01050000244869.a.a.a.a.a.a
Elapidae_a	ANCESTRAL SPECIES	170														ENSGT01090000260011.A.b.b.c	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00960000189462.a.a.a.a.a	ENSGT00960000189462.a.a.a.b.b	ENSGT00960000189462.a.a.b	ENSGT00940000153073.f.a.a.a.a.b.a	ENSGT00960000189462.a.a.a.b.a	ENSGT01090000260086.D.f.a.a.c.a
Acanthophiinae	ANCESTRAL SPECIES	112						ENSGT01090000260086.D.e	ENSGT01090000260086.D.f.a.b	ENSGT00960000190006	ENSGT01090000260086.D.f.a.a.c.b.a	ENSGT01090000260086.D.f.a.a.c.b.b	ENSGT00950000182788.a.b.b.a.a.b.a.a.b.a.a.a.b.e.b	ENSGT01090000260011.A.b.a.a	ENSGT01090000260011.A.b.a.b.b	ENSGT01090000260011.A.b.a.b.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00960000189462.a.a.a.a.a	ENSGT00960000189462.a.a.a.b.b	ENSGT00960000189462.a.a.b	ENSGT00940000153073.f.a.a.a.a.a.b	ENSGT00960000189462.a.b	ENSGT00940000153073.f.a.a.a.b	ENSGT00940000153073.f.a.a.a.a.a.a.a	ENSGT00940000153073.f.a.a.a.a.b.a	ENSGT00960000189462.a.a.a.b.a	ENSGT01090000260086.D.f.a.a.c.a
Mainland tiger snake	MODERN SPECIES	646															ABHD4 (ENSNSUG00000010124) #21	DAD1 (ENSNSUG00000010122) #22
Eastern brown snake	MODERN SPECIES	150			ENSPTXG00000015198	ENSPTXG00000015195	ENSPTXG00000015193	ENSPTXG00000015192	ENSPTXG00000015187	ENSPTXG00000015183	ENSPTXG00000015182	ENSPTXG00000015180	ENSPTXG00000015171	ENSPTXG00000015170	ENSPTXG00000015168	ENSPTXG00000015167	ABHD4 (ENSPTXG00000015165) #21	DAD1 (ENSPTXG00000015164) #22	ENSPTXG00000015162	ENSPTXG00000015161	ENSPTXG00000015160	ENSPTXG00000015158	ENSPTXG00000015156	ENSPTXG00000015154	ENSPTXG00000015153	ENSPTXG00000017201	ENSPTXG00000017198	ENSPTXG00000017195	ENSPTXG00000017192	ENSPTXG00000017191	ENSPTXG00000017190	ENSPTXG00000017186	ENSPTXG00000017183
Blue-lipped sea krait	MODERN SPECIES	2572															ABHD4 (ENSLLTG00000002060) #21	DAD1 (ENSLLTG00000002061) #22	ENSLLTG00000002073
Indian cobra	MODERN SPECIES	337	ENSNNAG00000006201	ENSNNAG00000006186	ENSNNAG00000006171	ENSNNAG00000006150	ENSNNAG00000006124	ENSNNAG00000006104	ENSNNAG00000006088	ENSNNAG00000006073	ENSNNAG00000006067	ENSNNAG00000006058	ENSNNAG00000006048	ENSNNAG00000006021	ENSNNAG00000006012	OR6M1 (ENSNNAG00000005998)	ENSNNAG00000005988	DAD1 (ENSNNAG00000005972) #22	ENSNNAG00000005946	ENSNNAG00000005927	ENSNNAG00000005914	ENSNNAG00000005889	ENSNNAG00000005876	ENSNNAG00000005869	ENSNNAG00000005858	ENSNNAG00000005845	ENSNNAG00000005826	ENSNNAG00000005811	ENSNNAG00000005801	ENSNNAG00000005780	ENSNNAG00000005769	ENSNNAG00000005757	ENSNNAG00000005743
Lizard	MODERN SPECIES	1561															ENSACAG00000003019 #21	ENSACAG00000042123 #22
tuatara	MODERN SPECIES	1339									ENSSPUG00000005731	ENSSPUG00000005759	ENSSPUG00000005780	ENSSPUG00000005793	ENSSPUG00000005815	ENSSPUG00000005828	ABHD4 (ENSSPUG00000005838) #21	DAD1 (ENSSPUG00000005843) #22	ENSSPUG00000005864	ENSSPUG00000005877	ENSSPUG00000005904	ENSSPUG00000005926	ENSSPUG00000005941	ENSSPUG00000005947	ENSSPUG00000005956	ENSSPUG00000005967	ENSSPUG00000005975	ENSSPUG00000005981	ENSSPUG00000005993
Archelosauria	ANCESTRAL SPECIES	117														ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00960000186967
Cryptodira	ANCESTRAL SPECIES	146														ENSGT01090000260011.B	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00960000186967
Testudinoidea	ANCESTRAL SPECIES	109													ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b.db #21	ENSGT00390000003324 #22	ENSGT00960000186967
Emydidae	ANCESTRAL SPECIES	183												ENSGT01090000260011.A.a.a.a	ENSGT01090000260011.B	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b.db #21	ENSGT00390000003324 #22
painted turtle	MODERN SPECIES	1945																ENSCPBG00000011534 #22
Three-toed box turtle	MODERN SPECIES	240												ENSTMTG00000018120	ENSTMTG00000018115	OR6J1 (ENSTMTG00000018110)	ENSTMTG00000018104 #21	ENSTMTG00000018095 #22
Testudinidae	ANCESTRAL SPECIES	238																ENSGT00390000003324 #22	ENSGT00960000186967
Abingdon island giant tortoise	MODERN SPECIES	2164																ENSCABG00000018752 #22	ENSCABG00000018754	ADAMTS9 (ENSCABG00000018760)	PRICKLE2 (ENSCABG00000018764)	PSMD6 (ENSCABG00000018768)	ATXN7 (ENSCABG00000018772)	ENSCABG00000018815	THOC7 (ENSCABG00000018816)	ENSCABG00000018818	SNTN (ENSCABG00000018820)	SYNPR (ENSCABG00000018824)	ENSCABG00000018828
Archosauria	ANCESTRAL SPECIES	192																ENSGT00390000003324 #22	ENSGT00960000186967
Aves	ANCESTRAL SPECIES	90															ENSGT00390000000337	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT01030000235488	ENSGT00940000164778	ENSGT00940000163533	ENSGT00940000162998
African ostrich	MODERN SPECIES	642	ENSSCUG00000009301	ITGB3 (ENSSCUG00000009297)	RPRML (ENSSCUG00000009295)	CRHR1 (ENSSCUG00000009290)	ENSSCUG00000009289	ASIC2 (ENSSCUG00000009287)	SMARCD2 (ENSSCUG00000009281)	PSMC5 (ENSSCUG00000009276)	FTSJ3 (ENSSCUG00000009255)	ENSSCUG00000009248	ENSSCUG00000009246	OR6P1 (ENSSCUG00000009243)	ENSSCUG00000009240	SDR39U1 (ENSSCUG00000009237)	ENSSCUG00000009231	DAD1 (ENSSCUG00000009228) #22	ENSSCUG00000009226	ENSSCUG00000009225	ENSSCUG00000009224	ENSSCUG00000009222	ENSSCUG00000009221	ENSSCUG00000009220
Neognathae	ANCESTRAL SPECIES	23															ENSGT00390000000337	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533	ENSGT00960000189394	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854	ENSGT00530000064085	ENSGT00390000003267	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a
Neognathae_b	ANCESTRAL SPECIES	23														ENSGT01100000263494.a.a.a.a.a.a	ENSGT00390000000337	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533	ENSGT00960000189394	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854	ENSGT00530000064085	ENSGT00390000003267	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a
Passeriformes	ANCESTRAL SPECIES	29	ENSGT00940000155510	ENSGT00940000158142	ENSGT00940000154018.a	ENSGT00390000014900.b.b.b	ENSGT00940000163612	ENSGT00940000169006	ENSGT00940000157190	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000162777.a.b.a	ENSGT01100000263494.a.a.a.a.a.a	ENSGT00390000000337	ENSGT00940000165513.b.a.a	ENSGT01060000248581.B.cb	ENSGT01030000234551.k.d.a.b.b	ENSGT01090000260011.B	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533.o.a	ENSGT00960000189394	ENSGT01030000235023	ENSGT00940000162998
Great tit	MODERN SPECIES	20	MEOX1 (ENSPMJG00000002425)	SOST (ENSPMJG00000002465)	DUSP3 (ENSPMJG00000002466)	ENSPMJG00000002468	MPP3 (ENSPMJG00000002676)	ENSPMJG00000002688	ENSPMJG00000002692	ENSPMJG00000002702	ENSPMJG00000002715	OR6P1 (ENSPMJG00000002836)	ENSPMJG00000002856	SDR39U1 (ENSPMJG00000002862)	ENSPMJG00000002864	ENSPMJG00000002865	ENSPMJG00000002866	DAD1 (ENSPMJG00000002867) #22	ENSPMJG00000002872	ENSPMJG00000002874	ENSPMJG00000002881	ENSPMJG00000002884	ENSPMJG00000002887	ENSPMJG00000002890	ENSPMJG00000002902	ENSPMJG00000002954	ENSPMJG00000002955	ENSPMJG00000002959	ENSPMJG00000002965	GTSF1 (ENSPMJG00000002968)	GOSR2 (ENSPMJG00000002975)	WNT9B (ENSPMJG00000002978)	WNT3 (ENSPMJG00000002997)
Passeriformes_d	ANCESTRAL SPECIES	25	ENSGT00940000163612	ENSGT00940000157325.`b	ENSGT00940000157190	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000162777.a.b.a	ENSGT00940000154596.b.x.d	ENSGT01050000244815.A.c.b.b.b	ENSGT00950000182858.A.a.f	ENSGT01060000248581.B.db.b.b.a	ENSGT01060000248581.B.cb	ENSGT00940000165513.b.a.a	ENSGT01100000263494.a.a.a.a.a.a	ENSGT00390000000337	ENSGT01030000234551.k.d.a.b.b	ENSGT01090000260011.B	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533.o.a.a.a	ENSGT00940000162998.j	ENSGT01030000235023	ENSGT00940000162998.i.a.a	ENSGT01090000260045.C.e.a.a.b	ENSGT01030000234722.a.a.a.b.b.b.b.a.c.b.b	ENSGT01030000234722.a.a.a.b.b.b.b.a.c.b.a	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854	ENSGT00530000064085	ENSGT00390000003267	ENSGT00390000015009	ENSGT00530000063909.a
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000163612	ENSGT00940000157325.`b	ENSGT00940000157190	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000162777.a.b.a	ENSGT00940000154596.b.x.d	ENSGT01050000244815.A.c.b.b.b	ENSGT00950000182858.A.a.f	ENSGT01060000248581.B.db.b.b.a	ENSGT01100000263494.a.a.a.a.a.a	ENSGT00390000000337	ENSGT00940000165513.b.a.a	ENSGT01060000248581.B.cb	ENSGT01030000234551.k.d.a.b.b	ENSGT01090000260011.B	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00960000189332.b	ENSGT00940000163533.o.a.a.a	ENSGT00940000163533.o.a.b	ENSGT00960000189394	ENSGT00940000162998.j	ENSGT01030000235023	ENSGT00940000162998.i.a.a	ENSGT01030000234722.a.a.a.b.b.b.b.a.c.a	ENSGT01090000260045.C.e.a.a.b	ENSGT01030000234722.a.a.a.b.b.b.b.a.c.b.b	ENSGT01030000234722.a.a.a.b.b.b.b.a.d.b.a.b.b.a	ENSGT01030000234722.a.a.a.b.b.b.b.a.d.b.a.b.a	ENSGT00950000183192.a.b	ENSGT00940000158599
Passeroidea	ANCESTRAL SPECIES	32	ENSGT00390000014900.b.b.b	ENSGT00940000163612	ENSGT00940000157325.`b	ENSGT00940000157190	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000162777.a.b.a	ENSGT00940000154596.b.x.d	ENSGT01050000244815.A.c.b.b.b	ENSGT00950000182858.A.a.f	ENSGT01060000248581.B.db.b.b.a	ENSGT00390000000337	ENSGT00940000165513.b.a.a	ENSGT01060000248581.B.cb	ENSGT01030000234551.k.d.a.b.b	ENSGT01090000260011.B	ENSGT00390000003324 #22	ENSGT00960000186967
Zebra finch	MODERN SPECIES	20	VAT1 (ENSTGUG00000027286)	RND2 (ENSTGUG00000021893)	BRCA1 (ENSTGUG00000002867)	NBR1 (ENSTGUG00000002873)	DHX8 (ENSTGUG00000002881)	ETV4 (ENSTGUG00000002922)	MEOX1 (ENSTGUG00000002938)	SOST (ENSTGUG00000002945)	DUSP3 (ENSTGUG00000023018)	ENSTGUG00000029680	MPP3 (ENSTGUG00000002948)	ENSTGUG00000002970	ENSTGUG00000002976	ENSTGUG00000002987	SDR39U1 (ENSTGUG00000002997)	DAD1 (ENSTGUG00000002998) #22	ENSTGUG00000028045	ENSTGUG00000024664	ENSTGUG00000003003	ENSTGUG00000003004	ENSTGUG00000025152	ENSTGUG00000003000	ENSTGUG00000027422	ENSTGUG00000003008	ENSTGUG00000024662	ENSTGUG00000025543	ENSTGUG00000003010	ENSTGUG00000021633	CWC25 (ENSTGUG00000003011)	PIP4K2B (ENSTGUG00000003020)	PSMB3 (ENSTGUG00000003023)
Common canary	MODERN SPECIES	42	DUSP3 (ENSSCAG00000006285)	ENSSCAG00000006279	MPP3 (ENSSCAG00000006273)	ENSSCAG00000006270	ENSSCAG00000006266	ENSSCAG00000006262	ENSSCAG00000006245	ENSSCAG00000006239	OR6P1 (ENSSCAG00000006227)	SDR39U1 (ENSSCAG00000006220)	ENSSCAG00000006216	ENSSCAG00000006209	ENSSCAG00000006199	ENSSCAG00000006172	ENSSCAG00000006160	DAD1 (ENSSCAG00000006155) #22	ENSSCAG00000006147	ENSSCAG00000006141	ENSSCAG00000006135	PIP4K2B (ENSSCAG00000006131)	PSMB3 (ENSSCAG00000006127)	PCGF2 (ENSSCAG00000006122)	ENSSCAG00000006121	ENSSCAG00000006117
Flycatcher	MODERN SPECIES	19	ENSFALG00000000854	ENSFALG00000000842	ENSFALG00000000865	ENSFALG00000000713	ENSFALG00000015275	ENSFALG00000000887	ENSFALG00000027660	ENSFALG00000015289	ENSFALG00000015304	ENSFALG00000026798	ENSFALG00000015309	ENSFALG00000015314	ENSFALG00000000894	ENSFALG00000000906	ENSFALG00000015320	ENSFALG00000000926 #22	ENSFALG00000024906	ENSFALG00000000931	ENSFALG00000014406	ENSFALG00000014398	ENSFALG00000027869	ENSFALG00000023530	ENSFALG00000028451	ENSFALG00000014101	ENSFALG00000028511	ENSFALG00000026546	ENSFALG00000026152	ENSFALG00000027890	ENSFALG00000024605	ENSFALG00000028417	ENSFALG00000024430
Neognathae_c	ANCESTRAL SPECIES	56														ENSGT01100000263494.a.a.a.a.a.a	ENSGT00390000000337	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533.n	ENSGT00940000163533.m	ENSGT00960000189394	ENSGT00940000162998	ENSGT01030000235023
Kakapo	MODERN SPECIES	12	ENSSHBG00005017728	ENSSHBG00005017719	ENSSHBG00005017711	ENSSHBG00005017704	ENSSHBG00005017694	EIF1 (ENSSHBG00005017683)	ENSSHBG00005017676	PDK2 (ENSSHBG00005017666)	ITGA3 (ENSSHBG00005017621)	ENSSHBG00005017602	ENSSHBG00005017600	ENSSHBG00005017592	SDR39U1 (ENSSHBG00005017585)	ENSSHBG00005017573	ENSSHBG00005017555	DAD1 (ENSSHBG00005017543) #22	ENSSHBG00005017539	ENSSHBG00005017535	ENSSHBG00005017533	ENSSHBG00005017529	ENSSHBG00005017528	ENSSHBG00005017523	ENSSHBG00005017521	ENSSHBG00005017519	ENSSHBG00005017518	MPP3 (ENSSHBG00005017516)	ENSSHBG00005017515	ENSSHBG00005017514	SOST (ENSSHBG00005017512)	MEOX1 (ENSSHBG00005017511)	ETV4 (ENSSHBG00005017506)
Golden eagle	MODERN SPECIES	24	MPC1 (ENSACCG00020001249)	RPS6KA2 (ENSACCG00020001205)	ENSACCG00020001176	RNASET2 (ENSACCG00020001160)	CEP43 (ENSACCG00020001119)	CCR6 (ENSACCG00020001101)	ENSACCG00020001090	ENSACCG00020001075	ENSACCG00020001063	ENSACCG00020001052	ENSACCG00020001042	SDR39U1 (ENSACCG00020001021)	ENSACCG00020000995	ENSACCG00020000974	ENSACCG00020000949	DAD1 (ENSACCG00020000923) #22	ENSACCG00020000900	ENSACCG00020000886	ENSACCG00020000848	ENSACCG00020000797	ENSACCG00020000765	ENSACCG00020000708	ENSACCG00020000692	ENSACCG00020000674	ENSACCG00020000649	ENSACCG00020000611	ENSACCG00020000566	ENSACCG00020000548	ENSACCG00020000534	GTSF1 (ENSACCG00020000517)	GOSR2 (ENSACCG00020000482)
Galloanserae	ANCESTRAL SPECIES	23														ENSGT00390000000337	ENSGT01050000244815.A.c.b.a.b	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533.l	ENSGT00960000189394	ENSGT01030000234722.a.a.a.b.b.b.b.b	ENSGT01030000234722.a.a.a.b.b.a	ENSGT00940000156784	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854	ENSGT00530000064085	ENSGT00390000003267	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b
Anatidae	ANCESTRAL SPECIES	72															ENSGT01050000244815.A.c.b.a.b	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT01030000234722.a.a.a.b.b.a.a	ENSGT00940000156784	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854	ENSGT00530000064085	ENSGT00390000003267	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790	ENSGT01090000260005.a.a.a.b.a.a.b	ENSGT00940000155685	ENSGT00390000004038	ENSGT00530000063991.a
Pink-footed goose	MODERN SPECIES	219	MRC2 (ENSABRG00000009232)	TLK2 (ENSABRG00000009176)	ENSABRG00000009136	ENSABRG00000009050	ITGB3 (ENSABRG00000008990)	ENSABRG00000008979	ENSABRG00000008957	CRHR1 (ENSABRG00000008926)	ENSABRG00000008917	ENSABRG00000008859	SDR39U1 (ENSABRG00000008851)	ENSABRG00000008838	ENSABRG00000008816	ENSABRG00000008774	ENSABRG00000008749	DAD1 (ENSABRG00000008739) #22	ENSABRG00000008735
Duck	MODERN SPECIES	19	ENSAPLG00000014288	KCNH6 (ENSAPLG00000014145)	DCAF7 (ENSAPLG00000013326)	MAP3K3 (ENSAPLG00000013287)	LIMD2 (ENSAPLG00000012774)	ENSAPLG00000012510	ENSAPLG00000010124	CCDC47 (ENSAPLG00000011325)	ENSAPLG00000025826	ENSAPLG00000010544	ENSAPLG00000023845	CDC27 (ENSAPLG00000009486)	KANSL1 (ENSAPLG00000009179)	ENSAPLG00000026065	ENSAPLG00000008120	DAD1 (ENSAPLG00000018549) #22	ENSAPLG00000015744	ENSAPLG00000025431	ENSAPLG00000004814	ENSAPLG00000004588	WNT9B (ENSAPLG00000004493)	NSF (ENSAPLG00000003325)	ENSAPLG00000022397	CCDC43 (ENSAPLG00000003028)	MEIOC (ENSAPLG00000003270)	GJC1 (ENSAPLG00000001944)	EFTUD2 (ENSAPLG00000011036)	ENSAPLG00000010875	FAM187A (ENSAPLG00000021615)	ENSAPLG00000010363	DCAKD (ENSAPLG00000026366)
Phasianidae	ANCESTRAL SPECIES	21															ENSGT01050000244815.A.c.b.a.b	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533.l.b	ENSGT00940000163533.l.a.a.b	ENSGT01030000234722.a.a.a.b.b.b.b.b.e.a	ENSGT01030000234722.a.a.a.b.b.b.a.b	ENSGT01030000234722.a.a.a.b.b.a	ENSGT00940000156784	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854	ENSGT00530000064085	ENSGT00390000003267	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790
Japanese quail	MODERN SPECIES	19															ENSCJPG00005018964	DAD1 (ENSCJPG00005018967) #22	ENSCJPG00005018968	ENSCJPG00005018969	ENSCJPG00005018970	ENSCJPG00005018971	ENSCJPG00005018972	ENSCJPG00005018974	ENSCJPG00005018975	ENSCJPG00005018976	ENSCJPG00005018978	ENSCJPG00005018979	ENSCJPG00005018980	ENSCJPG00005018983	ENSCJPG00005018984	ENSCJPG00005018985	ENSCJPG00005018986
Phasianidae_b	ANCESTRAL SPECIES	21															ENSGT00940000162662.s	ENSGT00390000003324 #22	ENSGT00960000186967	ENSGT00940000163533.l.b	ENSGT00940000163533.l.a.a.b.b	ENSGT01030000234722.a.a.a.b.b.b.b.b.e.a	ENSGT01030000234722.a.a.a.b.b.b.a.b.a	ENSGT01030000234722.a.a.a.b.b.a	ENSGT00940000156784	ENSGT00950000183192.a.b	ENSGT00940000158599	ENSGT00940000157854	ENSGT00530000064085	ENSGT00390000003267	ENSGT00390000015009	ENSGT00530000063909.a	ENSGT00940000159790
Chicken	MODERN SPECIES	19											ENSGALG00010026370	ENSGALG00010026378	ENSGALG00010026397	ENSGALG00010022029	ENSGALG00010022054	DAD1 (ENSGALG00010022066) #22	ENSGALG00010021157	ENSGALG00010025331	ENSGALG00010025431	ENSGALG00010025436	ENSGALG00010025437	ENSGALG00010025443	ENSGALG00010025446	ENSGALG00010025454	ENSGALG00010025476	ENSGALG00010025495	ENSGALG00010025510	ENSGALG00010025534	ENSGALG00010025556	ENSGALG00010025560	ENSGALG00010025588
Turkey	MODERN SPECIES	21															ENSMGAG00000000651	ENSMGAG00000000656 #22	ENSMGAG00000019102	ENSMGAG00000018953	ENSMGAG00000021655	ENSMGAG00000015631	ENSMGAG00000000685	GOSR2 (ENSMGAG00000000680)	WNT9B (ENSMGAG00000020473)	WNT3 (ENSMGAG00000000740)	NSF (ENSMGAG00000000747)	MEIOC (ENSMGAG00000000795)	CCDC43 (ENSMGAG00000021096)	ENSMGAG00000010488	ADAM11 (ENSMGAG00000017604)	ENSMGAG00000010863	GJC1 (ENSMGAG00000010491)
Anura	ANCESTRAL SPECIES	42	ENSGT00710000106790 #7	ENSGT00390000007438	ENSGT00940000163573	ENSGT00940000161068	ENSGT00940000162747	ENSGT00940000160134 #19	ENSGT00530000063506.B #20	ENSGT00940000161491.d.b	ENSGT00940000162793	ENSGT00940000161491.c.b	ENSGT00940000161491.d.a.b	ENSGT00940000163371.b.b.f	ENSGT00940000161491.d.a.a	ENSGT01030000234536.b.a.b.b.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT01030000235488	ENSGT01070000257326	ENSGT01070000256073.B	ENSGT00940000163951.e.a	ENSGT00940000164778	ENSGT00950000182968	ENSGT00940000153073	ENSGT00940000153130 #35
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000006800	ENSLLEG00000006671	ENSLLEG00000006647	ENSLLEG00000006635	ENSLLEG00000006613	ENSLLEG00000006588	ENSLLEG00000006568	ENSLLEG00000006519	ENSLLEG00000006473	ENSLLEG00000006454	ENSLLEG00000006425	ENSLLEG00000006408	ENSLLEG00000006399	ENSLLEG00000006367	ABHD4 (ENSLLEG00000006334) #21	DAD1 (ENSLLEG00000006299) #22	ENSLLEG00000006264	ENSLLEG00000006147	ENSLLEG00000006107	ENSLLEG00000006081	ENSLLEG00000006051	ENSLLEG00000006030	ENSLLEG00000006008	ENSLLEG00000005994	ENSLLEG00000005978	ENSLLEG00000005965	ENSLLEG00000005937	ENSLLEG00000005913	ENSLLEG00000005892	ENSLLEG00000005871	ENSLLEG00000005836
Frog	MODERN SPECIES		ENSXETG00000041794	ENSXETG00000048110	ENSXETG00000042206	ENSXETG00000048647	ENSXETG00000036915	ENSXETG00000026854	ENSXETG00000038161	ENSXETG00000033512	ENSXETG00000047194	ENSXETG00000039910	ENSXETG00000041737	ENSXETG00000042931	XB5734592 (ENSXETG00000014399)	ENSXETG00000041864	abhd4 (ENSXETG00000008018) #21	dad1 (ENSXETG00000026483) #22	trac (ENSXETG00000008022) #29	ENSXETG00000034789	ENSXETG00000040290	ENSXETG00000032362	ENSXETG00000041251	ENSXETG00000035219 #35	ENSXETG00000038827	ENSXETG00000037500	ENSXETG00000040189	ENSXETG00000040282	ENSXETG00000039533	ENSXETG00000037157	ENSXETG00000034518	ENSXETG00000037859	ENSXETG00000034488
Coelacanth	MODERN SPECIES	3595																DAD1 (ENSLACG00000003469) #22
Actinopterygii	ANCESTRAL SPECIES	870															ENSGT00390000016277.b #21	ENSGT00390000003324 #22
Neopterygii	ANCESTRAL SPECIES	357									ENSGT00940000160783 #16	ENSGT00940000157808 #17	ENSGT00390000005763 #18	ENSGT00940000160978 #11	ENSGT00710000106790 #7	ENSGT00390000007438	ENSGT00390000016277.b #21	ENSGT00390000003324 #22
Osteoglossocephalai	ANCESTRAL SPECIES	466													ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b
Clupeocephala	ANCESTRAL SPECIES	85	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00950000182977.B.b.a.d	ENSGT00940000160141	ENSGT00390000004859.d	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT00950000183014.f.b.b.a.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e	ENSGT00940000155331.A.f
Euteleosteomorpha	ANCESTRAL SPECIES	381												ENSGT00940000177341	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b
Acanthomorphata	ANCESTRAL SPECIES	57	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000154952.a.b
Cod	MODERN SPECIES	21	zp3f.1 (ENSGMOG00000024826)	zp3f.2 (ENSGMOG00000004059)	ENSGMOG00000023050	ap1g2 (ENSGMOG00000004105)	ENSGMOG00000004149	prmt5 (ENSGMOG00000004495) #13	ENSGMOG00000036061	psmb5 (ENSGMOG00000026494) #9	ENSGMOG00000031120 #8	carmil3 (ENSGMOG00000012889)	ENSGMOG00000031679	rem2 (ENSGMOG00000032879) #15	ENSGMOG00000009555	ENSGMOG00000005135	abhd4 (ENSGMOG00000005163) #21	dad1 (ENSGMOG00000005192) #22	ENSGMOG00000005203	ENSGMOG00000033618	slc6a9 (ENSGMOG00000024181)	klf17 (ENSGMOG00000025553)	rnf220a (ENSGMOG00000018091)	tmem53 (ENSGMOG00000026994)	ENSGMOG00000001802	toe1 (ENSGMOG00000004656)	ENSGMOG00000004691	zswim5 (ENSGMOG00000004696)	ENSGMOG00000004723	lyn (ENSGMOG00000004746)	ctnnd2b (ENSGMOG00000017054)	ENSGMOG00000006410	marchf6 (ENSGMOG00000006372)
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011
Pinecone sodierfish	MODERN SPECIES	8	ENSMMDG00005024260	zp3f.1 (ENSMMDG00005024263)	zp3f.2 (ENSMMDG00005024267)	nedd8l (ENSMMDG00005024269)	ap1g2 (ENSMMDG00005024276)	ENSMMDG00005024318	prmt5 (ENSMMDG00005024408) #13	PSMB11 (ENSMMDG00005024426)	psmb5 (ENSMMDG00005024428) #9	CDH24 (ENSMMDG00005024431) #8	carmil3 (ENSMMDG00005024434)	rem2 (ENSMMDG00005024443) #15	ENSMMDG00005024444	TGM1 (ENSMMDG00005024445)	abhd4 (ENSMMDG00005024447) #21	dad1 (ENSMMDG00005024449) #22	ENSMMDG00005001283	LRRC24 (ENSMMDG00005001293)	slc6a9 (ENSMMDG00005001309)	klf17 (ENSMMDG00005001344)	rnf220a (ENSMMDG00005001357)	RNF220 (ENSMMDG00005001366)	tmem53 (ENSMMDG00005001369)	tesk2 (ENSMMDG00005001379)	toe1 (ENSMMDG00005001421)	ENSMMDG00005001611	elovl8a (ENSMMDG00005001617)	fabp6 (ENSMMDG00005001626)	zswim5 (ENSMMDG00005001656)	urod (ENSMMDG00005001845)	lyn (ENSMMDG00005003527)
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Tiger tail seahorse	MODERN SPECIES	167	zswim5 (ENSHCOG00000016316)	elovl8a (ENSHCOG00000016376)	ENSHCOG00000016382	si:ch73-382f3.1 (ENSHCOG00000016392)	toe1 (ENSHCOG00000016394)	tmem53 (ENSHCOG00000016401)	RNF220 (ENSHCOG00000016408)	rnf220a (ENSHCOG00000016428)	klf17 (ENSHCOG00000016439)	ENSHCOG00000016442	slc6a9 (ENSHCOG00000016458)	LRRC24 (ENSHCOG00000016473)	ENSHCOG00000016481	TGM1 (ENSHCOG00000016496)	abhd4 (ENSHCOG00000016528) #21	dad1 (ENSHCOG00000016538) #22	ENSHCOG00000016552	rem2 (ENSHCOG00000016556) #15
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00970000197307	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Zig-zag eel	MODERN SPECIES	8	zp3f.1 (ENSMAMG00000013942)	zp3f.2 (ENSMAMG00000027500)	ENSMAMG00000014188	ap1g2 (ENSMAMG00000014168)	ENSMAMG00000014629	prmt5 (ENSMAMG00000014648) #13	ENSMAMG00000014709	psmb5 (ENSMAMG00000025097) #9	ENSMAMG00000014849 #8	carmil3 (ENSMAMG00000014869)	ENSMAMG00000014975	rem2 (ENSMAMG00000014986) #15	ENSMAMG00000015007	ENSMAMG00000015028	abhd4 (ENSMAMG00000015056) #21	dad1 (ENSMAMG00000028739) #22	ENSMAMG00000015093	ENSMAMG00000024595	slc6a9 (ENSMAMG00000015117)	klf17 (ENSMAMG00000015172)	rnf220a (ENSMAMG00000015193)	tmem53 (ENSMAMG00000015284)	toe1 (ENSMAMG00000015291)	ENSMAMG00000027612	ENSMAMG00000015312	elovl8a (ENSMAMG00000015345)	ENSMAMG00000028732	zswim5 (ENSMAMG00000024560)	urod (ENSMAMG00000015427)	lyn (ENSMAMG00000015472)	ENSMAMG00000015480
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a
Siamese fighting fish	MODERN SPECIES	8	dhrs1 (ENSBSLG00000009880)	homeza (ENSBSLG00000009874)	zp3f.1 (ENSBSLG00000009808)	zp3f.2 (ENSBSLG00000009711)	nedd8l (ENSBSLG00000009341)	ap1g2 (ENSBSLG00000008832)	prmt5 (ENSBSLG00000008788) #13	PSMB11 (ENSBSLG00000008746)	psmb5 (ENSBSLG00000008741) #9	ENSBSLG00000008696 #8	carmil3 (ENSBSLG00000008401)	rem2 (ENSBSLG00000008350) #15	ENSBSLG00000008320	ENSBSLG00000007931	abhd4 (ENSBSLG00000007826) #21	dad1 (ENSBSLG00000007777) #22	ENSBSLG00000007753	LRRC24 (ENSBSLG00000007711)	slc6a9 (ENSBSLG00000006886)	klf17 (ENSBSLG00000006288)	paxip1 (ENSBSLG00000005197)	en2b (ENSBSLG00000004859)	fam110b (ENSBSLG00000004840)	ENSBSLG00000004806	ENSBSLG00000004773	ENSBSLG00000004750	ptf1a (ENSBSLG00000004553)	dlgap1a (ENSBSLG00000004470)	cahz (ENSBSLG00000004462)	sdr16c5a (ENSBSLG00000004457)	ENSBSLG00000004455
Climbing perch	MODERN SPECIES	8	homeza (ENSATEG00000007417)	ENSATEG00000007689	zp3f.1 (ENSATEG00000007431)	zp3f.2 (ENSATEG00000007728)	nedd8l (ENSATEG00000008031)	ap1g2 (ENSATEG00000007913)	ENSATEG00000027493	prmt5 (ENSATEG00000008281) #13	ENSATEG00000008341	psmb5 (ENSATEG00000008354) #9	ENSATEG00000008390 #8	rem2 (ENSATEG00000008700) #15	ENSATEG00000008711	ENSATEG00000008729	abhd4 (ENSATEG00000008745) #21	dad1 (ENSATEG00000025227) #22	ENSATEG00000008780	ENSATEG00000029806	ENSATEG00000008827	ENSATEG00000008894	ENSATEG00000008902	ENSATEG00000026209	ENSATEG00000008925	toe1 (ENSATEG00000008973)	ENSATEG00000029973	ENSATEG00000009003	elovl8a (ENSATEG00000009033)	ENSATEG00000009064	zswim5 (ENSATEG00000009092)	urod (ENSATEG00000009146)	lyn (ENSATEG00000009173)
Carangaria	ANCESTRAL SPECIES	5	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Turbot	MODERN SPECIES	19	mmp14b (ENSSMAG00000014173) #17	si:ch211-14a17.11 (ENSSMAG00000014254)	ENSSMAG00000029161	dhrs1 (ENSSMAG00000014263)	homeza (ENSSMAG00000014286)	zp3f.2 (ENSSMAG00000014460)	ap1g2 (ENSSMAG00000014531)	ENSSMAG00000014603	prmt5 (ENSSMAG00000014662) #13	psmb5 (ENSSMAG00000014870) #9	ENSSMAG00000014891 #8	rem2 (ENSSMAG00000015126) #15	ENSSMAG00000015133	ENSSMAG00000015142	abhd4 (ENSSMAG00000015153) #21	dad1 (ENSSMAG00000025112) #22	ENSSMAG00000015201	ENSSMAG00000015230	slc6a9 (ENSSMAG00000015239)	klf17 (ENSSMAG00000015300)	rnf220a (ENSSMAG00000015364)	tmem53 (ENSSMAG00000015349)	toe1 (ENSSMAG00000015336)	toe1 (ENSSMAG00000015322)	ENSSMAG00000015384	elovl8a (ENSSMAG00000015395)	ENSSMAG00000015430	zswim5 (ENSSMAG00000015448)	urod (ENSSMAG00000015474)	lyn (ENSSMAG00000015483)	ctnnd2b (ENSSMAG00000015538)
Tongue sole	MODERN SPECIES	12	si:ch211-188c16.1 (ENSCSEG00000018362)	PLPP3 (ENSCSEG00000018379)	ENSCSEG00000018384	pgap6 (ENSCSEG00000018393)	rgs11 (ENSCSEG00000018404)	ints15 (ENSCSEG00000018432)	tfr1a (ENSCSEG00000018440)	ENSCSEG00000018456	ENSCSEG00000018481 #8	carmil3 (ENSCSEG00000018515)	ENSCSEG00000018540	rem2 (ENSCSEG00000018544) #15	ENSCSEG00000018552	TGM1 (ENSCSEG00000018559)	abhd4 (ENSCSEG00000018573) #21	dad1 (ENSCSEG00000018581) #22	ENSCSEG00000018601	anxa13l (ENSCSEG00000018618)	ENSCSEG00000018646	tlk1b (ENSCSEG00000018660)	DIS3L2 (ENSCSEG00000018729)	gorasp2 (ENSCSEG00000018760)	gad1b (ENSCSEG00000018765)	SLC25A30 (ENSCSEG00000018781)	EDNRB (ENSCSEG00000018794)	ENSCSEG00000018803	sugt1 (ENSCSEG00000018819)	CNMD (ENSCSEG00000018849)	PCDH8 (ENSCSEG00000018861)	ENSCSEG00000018865	ENSCSEG00000018871
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Barramundi perch	MODERN SPECIES	69	homeza (ENSLCAG00010006853)	zp3f.1 (ENSLCAG00010006862)	zp3f.2 (ENSLCAG00010006880)	ENSLCAG00010006890	ap1g2 (ENSLCAG00010006944)	ENSLCAG00010007133	prmt5 (ENSLCAG00010007248) #13	PSMB11 (ENSLCAG00010007390)	psmb5 (ENSLCAG00010007393) #9	ENSLCAG00010007397 #8	carmil3 (ENSLCAG00010007454)	rem2 (ENSLCAG00010007501) #15	ENSLCAG00010007509	TGM1 (ENSLCAG00010007552)	abhd4 (ENSLCAG00010007640) #21	dad1 (ENSLCAG00010007646) #22	ENSLCAG00010007656	LRRC24 (ENSLCAG00010007668)	slc6a9 (ENSLCAG00010007702)	klf17 (ENSLCAG00010007739)	rnf220a (ENSLCAG00010007753)	tmem53 (ENSLCAG00010007788)	toe1 (ENSLCAG00010007807)	ENSLCAG00010007840	ENSLCAG00010007846	elovl8a (ENSLCAG00010007853)	fabp6 (ENSLCAG00010007858)	zswim5 (ENSLCAG00010007865)	urod (ENSLCAG00010007882)	lyn (ENSLCAG00010007909)	ENSLCAG00010007912
Seriola	ANCESTRAL SPECIES		ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000159432.C	ENSGT00990000203911	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000154805.b.g.e.b.d.z	ENSGT01100000263899	ENSGT00940000154805.b.g.e.b.d.y	ENSGT00940000159742.rb	ENSGT00940000156200.A
Greater amberjack	MODERN SPECIES	51	zp3f.2 (ENSSDUG00000011997)	ENSSDUG00000011979	ENSSDUG00000011900	ENSSDUG00000011845	ENSSDUG00000011800	prmt5 (ENSSDUG00000011753) #13	PSMB11 (ENSSDUG00000011703)	psmb5 (ENSSDUG00000011695) #9	CDH24 (ENSSDUG00000011668) #8	carmil3 (ENSSDUG00000011440)	ENSSDUG00000011408	rem2 (ENSSDUG00000011395) #15	ENSSDUG00000011383	TGM1 (ENSSDUG00000011356)	abhd4 (ENSSDUG00000011298) #21	dad1 (ENSSDUG00000011264) #22	ENSSDUG00000011252	LRRC24 (ENSSDUG00000011196)	slc6a9 (ENSSDUG00000011162)	klf17 (ENSSDUG00000011146)	rnf220a (ENSSDUG00000011125)	trnau1apb (ENSSDUG00000011109)	fitm1l (ENSSDUG00000011100)	myh7l (ENSSDUG00000011016)	myh7 (ENSSDUG00000010934)	myh7 (ENSSDUG00000010861)	myh7 (ENSSDUG00000010785)	ENSSDUG00000010769	lhx8a (ENSSDUG00000010758)	klhl20 (ENSSDUG00000010724)	brinp2 (ENSSDUG00000010694)
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	1787																dad1 (ENSSLDG00000008530) #22
Yellowtail amberjack	MODERN SPECIES	2684											ENSSLDG00000012372	rem2 (ENSSLDG00000012360) #15	ENSSLDG00000012319	TGM1 (ENSSLDG00000012288)	abhd4 (ENSSLDG00000012260) #21	dad1 (ENSSLDG00000012236) #22	ENSSLDG00000012213	LRRC24 (ENSSLDG00000012199)
Eupercaria	ANCESTRAL SPECIES	22	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00940000160625.q	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00950000183208.B.f.b	ENSGT00940000160228.i.b.o	ENSGT00940000163239	ENSGT00940000165190.A.b.a	ENSGT00940000154801.o.a	ENSGT01030000234815	ENSGT00950000182860.a.a.b.a.a	ENSGT00940000160228.i.b.p	ENSGT00940000166125
Fugu	MODERN SPECIES	14	homeza (ENSTRUG00000005126)	ENSTRUG00000004916	ap1g2 (ENSTRUG00000004157)	ENSTRUG00000003224	prmt5 (ENSTRUG00000002234) #13	PSMB11 (ENSTRUG00000032620)	psmb5 (ENSTRUG00000032414) #9	ENSTRUG00000017632 #8	carmil3 (ENSTRUG00000017665)	rem2 (ENSTRUG00000000259) #15	ENSTRUG00000030657	ENSTRUG00000000297	TGM1 (ENSTRUG00000000379)	ENSTRUG00000000440	abhd4 (ENSTRUG00000000521) #21	dad1 (ENSTRUG00000000531) #22	pigr (ENSTRUG00000000549)	LRRC24 (ENSTRUG00000023744)	slc6a9 (ENSTRUG00000024850)	klf17 (ENSTRUG00000000953)	rnf220a (ENSTRUG00000000977)	tmem53 (ENSTRUG00000023869)	ENSTRUG00000001256	ENSTRUG00000001496	tmem53 (ENSTRUG00000028392)	ENSTRUG00000029840	pold3 (ENSTRUG00000001631)	ENSTRUG00000030884	ENSTRUG00000002324	ENSTRUG00000033451	ENSTRUG00000026482
Tetraodon	MODERN SPECIES	6	homeza (ENSTNIG00000000498)	zp3f.1 (ENSTNIG00000007943)	zp3f.2 (ENSTNIG00000007944)	nedd8l (ENSTNIG00000007945)	ap1g2 (ENSTNIG00000007946)	ENSTNIG00000007947	prmt5 (ENSTNIG00000007948) #13	PSMB11 (ENSTNIG00000001142)	psmb5 (ENSTNIG00000007949) #9	CDH24 (ENSTNIG00000007950) #8	carmil3 (ENSTNIG00000007951)	ENSTNIG00000007952	TGM1 (ENSTNIG00000007953)	ENSTNIG00000007954	abhd4 (ENSTNIG00000007955) #21	dad1 (ENSTNIG00000007956) #22	ENSTNIG00000007957	LRRC24 (ENSTNIG00000007958)	slc6a9 (ENSTNIG00000007959)	rnf220a (ENSTNIG00000007960)	tmem53 (ENSTNIG00000007961)	ZEB1 (ENSTNIG00000007962)	ENSTNIG00000007963	pold3 (ENSTNIG00000007964)	ENSTNIG00000007965	ENSTNIG00000007966	ENSTNIG00000001558	ENSTNIG00000007967	KIF5B (ENSTNIG00000007968)	arhgap12b (ENSTNIG00000007969)	ENSTNIG00000007970
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Ballan wrasse	MODERN SPECIES	491												rem2 (ENSLBEG00000001519) #15	ENSLBEG00000001478	TGM1 (ENSLBEG00000001411)	abhd4 (ENSLBEG00000001374) #21	dad1 (ENSLBEG00000001350) #22	ENSLBEG00000001331	LRRC24 (ENSLBEG00000001316)	slc6a9 (ENSLBEG00000001270)	klf17 (ENSLBEG00000001245)
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Perciformes	ANCESTRAL SPECIES	5	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470	ENSGT00940000154952.a.b
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470	ENSGT00940000154952.a.b
Stickleback	MODERN SPECIES	2	fabp6 (ENSGACG00000014354)	zswim5 (ENSGACG00000014366)	urod (ENSGACG00000014377)	lyn (ENSGACG00000014381)	ENSGACG00000014398	ctnnd2b (ENSGACG00000014401)	ttpa (ENSGACG00000014413)	ENSGACG00000014417	dnai4 (ENSGACG00000014418)	cnpy1 (ENSGACG00000014423)	en2b (ENSGACG00000014426)	paxip1 (ENSGACG00000014427)	ENSGACG00000014434	TGM1 (ENSGACG00000014435)	abhd4 (ENSGACG00000014448) #21	dad1 (ENSGACG00000014453) #22	ENSGACG00000014455	LRRC24 (ENSGACG00000014460)	slc6a9 (ENSGACG00000014462)	klf17 (ENSGACG00000014465)	ENSGACG00000014469	rnf220a (ENSGACG00000014470)	tmem53 (ENSGACG00000014476)	col15a1b (ENSGACG00000014478)	ENSGACG00000014494	crispld1b (ENSGACG00000014501)	NETO1 (ENSGACG00000014515)	atpsckmt (ENSGACG00000014519)	marchf6 (ENSGACG00000014521)	ANKRD33B (ENSGACG00000014533)	ENSGACG00000014534
Lumpfish	MODERN SPECIES	8	zp3f.1 (ENSCLMG00005008983)	zp3f.1 (ENSCLMG00005008982)	zp3f.2 (ENSCLMG00005008976)	nedd8l (ENSCLMG00005008909)	ap1g2 (ENSCLMG00005008889)	ENSCLMG00005008850	prmt5 (ENSCLMG00005008205) #13	PSMB11 (ENSCLMG00005008202)	psmb5 (ENSCLMG00005008199) #9	CDH24 (ENSCLMG00005008194) #8	carmil3 (ENSCLMG00005008193)	rem2 (ENSCLMG00005008191) #15	ENSCLMG00005008190	TGM1 (ENSCLMG00005008006)	abhd4 (ENSCLMG00005007998) #21	dad1 (ENSCLMG00005007997) #22	ENSCLMG00005007995	LRRC24 (ENSCLMG00005007992)	slc6a9 (ENSCLMG00005007944)	klf17 (ENSCLMG00005007937)	rnf220a (ENSCLMG00005007935)	RNF220 (ENSCLMG00005007933)	ENSCLMG00005007932	ENSCLMG00005007931	tmem53 (ENSCLMG00005007929)	toe1 (ENSCLMG00005007926)	ENSCLMG00005007923	elovl8a (ENSCLMG00005007821)	fabp6 (ENSCLMG00005007818)	zswim5 (ENSCLMG00005007622)	urod (ENSCLMG00005007616)
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT00950000182893.a.b.e.b	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470	ENSGT00940000154952.a.b
Pike perch	MODERN SPECIES	245	dhrs1 (ENSSLUG00000007726)	homeza (ENSSLUG00000007717)	zp3f.1 (ENSSLUG00000007689)	nedd8l (ENSSLUG00000007644)	ap1g2 (ENSSLUG00000006828)	ENSSLUG00000005607	prmt5 (ENSSLUG00000005387) #13	PSMB11 (ENSSLUG00000005233)	psmb5 (ENSSLUG00000005195) #9	ENSSLUG00000005168 #8	carmil3 (ENSSLUG00000005097)	rem2 (ENSSLUG00000005059) #15	ENSSLUG00000005049	TGM1 (ENSSLUG00000004349)	abhd4 (ENSSLUG00000004285) #21	dad1 (ENSSLUG00000004277) #22	ENSSLUG00000004268	LRRC24 (ENSSLUG00000004257)
Channel bull blenny	MODERN SPECIES	8	zp3f.1 (ENSCGOG00000005642)	zp3f.2 (ENSCGOG00000005632)	nedd8l (ENSCGOG00000005631)	ap1g2 (ENSCGOG00000003486)	ENSCGOG00000002565	prmt5 (ENSCGOG00000002081) #13	PSMB11 (ENSCGOG00000002053)	psmb5 (ENSCGOG00000002044) #9	CDH24 (ENSCGOG00000002035) #8	ENSCGOG00000002032	carmil3 (ENSCGOG00000001989)	rem2 (ENSCGOG00000001977) #15	ENSCGOG00000001973	TGM1 (ENSCGOG00000001765)	abhd4 (ENSCGOG00000001748) #21	dad1 (ENSCGOG00000001719) #22	ENSCGOG00000001714	LRRC24 (ENSCGOG00000001707)	slc6a9 (ENSCGOG00000024378)	klf17 (ENSCGOG00000024368)	rnf220a (ENSCGOG00000024363)	tmem53 (ENSCGOG00000024361)	toe1 (ENSCGOG00000024360)	ENSCGOG00000024358	elovl8a (ENSCGOG00000024350)	fabp6 (ENSCGOG00000024345)	zswim5 (ENSCGOG00000024324)	urod (ENSCGOG00000024303)	lyn (ENSCGOG00000023957)	ENSCGOG00000023887	ctnnd2b (ENSCGOG00000023832)
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Gilthead seabream	MODERN SPECIES	13	zp3f.1 (ENSSAUG00010020760)	zp3f.2 (ENSSAUG00010020756)	nedd8l (ENSSAUG00010020755)	ap1g2 (ENSSAUG00010020752)	ENSSAUG00010018919	prmt5 (ENSSAUG00010018781) #13	PSMB11 (ENSSAUG00010018769)	psmb5 (ENSSAUG00010018758) #9	ENSSAUG00010018752 #8	carmil3 (ENSSAUG00010018666)	ENSSAUG00010018652	rem2 (ENSSAUG00010018649) #15	ENSSAUG00010018646	TGM1 (ENSSAUG00010018630)	abhd4 (ENSSAUG00010018628) #21	dad1 (ENSSAUG00010018626) #22	ENSSAUG00010018625	LRRC24 (ENSSAUG00010018622)	slc6a9 (ENSSAUG00010018394)	klf17 (ENSSAUG00010018385)	rnf220a (ENSSAUG00010018375)	tmem53 (ENSSAUG00010018371)	toe1 (ENSSAUG00010018368)	ENSSAUG00010018366	ENSSAUG00010018365	elovl8a (ENSSAUG00010018362)	FABP6 (ENSSAUG00010018356)	zswim5 (ENSSAUG00010018250)	urod (ENSSAUG00010017524)	lyn (ENSSAUG00010017383)	ENSSAUG00010017379
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Large yellow croaker	MODERN SPECIES	481	zp3f.2 (ENSLCRG00005007985)	nedd8l (ENSLCRG00005007989)	ap1g2 (ENSLCRG00005008047)	SLC7A8 (ENSLCRG00005011039)	prmt5 (ENSLCRG00005011045) #13	ENSLCRG00005011079	PSMB11 (ENSLCRG00005011085)	psmb5 (ENSLCRG00005011115) #9	ENSLCRG00005011116 #8	carmil3 (ENSLCRG00005011124)	ENSLCRG00005011131	rem2 (ENSLCRG00005011132) #15	ENSLCRG00005011134	TGM1 (ENSLCRG00005011164)	abhd4 (ENSLCRG00005012820) #21	dad1 (ENSLCRG00005012822) #22	ENSLCRG00005012823	LRRC24 (ENSLCRG00005012825)	slc6a9 (ENSLCRG00005012839)	klf17 (ENSLCRG00005014088)	rnf220a (ENSLCRG00005014091)	tmem53 (ENSLCRG00005014094)	ENSLCRG00005014096	ENSLCRG00005014097	FITM1 (ENSLCRG00005014099)	trnau1apb (ENSLCRG00005014100)	ENSLCRG00005014101	myh7l (ENSLCRG00005014114)	ENSLCRG00005014839	ENSLCRG00005015447	myh7 (ENSLCRG00005015552)
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a
Pomacentridae_A	ANCESTRAL SPECIES	80	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000181736	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a
Amphiprion	ANCESTRAL SPECIES	95	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000181736	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a
Orange clownfish	MODERN SPECIES	1	ENSAPEG00000020012	zp3f.2 (ENSAPEG00000019965)	zp3f.1 (ENSAPEG00000019923)	nedd8l (ENSAPEG00000019896)	ap1g2 (ENSAPEG00000019801)	ENSAPEG00000019771	prmt5 (ENSAPEG00000019711) #13	PSMB11 (ENSAPEG00000019690)	psmb5 (ENSAPEG00000019669) #9	ENSAPEG00000019520 #8	carmil3 (ENSAPEG00000019429)	rem2 (ENSAPEG00000019406) #15	ENSAPEG00000019354	TGM1 (ENSAPEG00000019342)	abhd4 (ENSAPEG00000019294) #21	dad1 (ENSAPEG00000019275) #22	ENSAPEG00000019251	LRRC24 (ENSAPEG00000019229)	slc6a9 (ENSAPEG00000019159)	klf17 (ENSAPEG00000019089)	PIP5K1C (ENSAPEG00000019039)	ENSAPEG00000018054	ENSAPEG00000017942	ENSAPEG00000017931	ENSAPEG00000017906	ENSAPEG00000017890	epha4b (ENSAPEG00000017822)	ENSAPEG00000017759	ENSAPEG00000017569	ENSAPEG00000017493	rapgef4b (ENSAPEG00000017407)
Clown anemonefish	MODERN SPECIES	2712															abhd4 (ENSAOCG00000012628) #21	dad1 (ENSAOCG00000012576) #22	ENSAOCG00000012563	LRRC24 (ENSAOCG00000012537)
Spiny chromis	MODERN SPECIES	623									carmil3 (ENSAPOG00000009596)	ENSAPOG00000009641	ENSAPOG00000000993	rem2 (ENSAPOG00000009667) #15	ENSAPOG00000009676	TGM1 (ENSAPOG00000009718)	abhd4 (ENSAPOG00000009746) #21	dad1 (ENSAPOG00000009760) #22	ENSAPOG00000009775	LRRC24 (ENSAPOG00000009786)	slc6a9 (ENSAPOG00000009838)	klf17 (ENSAPOG00000009856)	rnf220a (ENSAPOG00000009927)
Bicolor damselfish	MODERN SPECIES	1644												rem2 (ENSSPAG00000020752) #15	ENSSPAG00000020729	TGM1 (ENSSPAG00000020711)	abhd4 (ENSSPAG00000020696) #21	dad1 (ENSSPAG00000020691) #22	ENSSPAG00000020677	LRRC24 (ENSSPAG00000020665)	ENSSPAG00000020657	slc6a9 (ENSSPAG00000020604)
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b.a	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Pseudocrenilabrinae_A	DUPLICATION
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.x #22	ENSGT00950000182977.B.b.a.c.b.a	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.x #22	ENSGT00950000182977.B.b.a.c.b.a	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Burton s mouthbrooder	MODERN SPECIES	429	ENSHBUG00000003018	zp3f.1 (ENSHBUG00000003059)	zp3f.2 (ENSHBUG00000003104)	ENSHBUG00000003113	ap1g2 (ENSHBUG00000003123)	prmt5 (ENSHBUG00000003185) #13	PSMB11 (ENSHBUG00000003403)	psmb5 (ENSHBUG00000003438) #9	CDH24 (ENSHBUG00000003454) #8	carmil3 (ENSHBUG00000003522)	ENSHBUG00000003537	rem2 (ENSHBUG00000003559) #15	ENSHBUG00000003569	TGM1 (ENSHBUG00000003586)	abhd4 (ENSHBUG00000003603) #21	dad1 (ENSHBUG00000003648) #22	ENSHBUG00000003659	LRRC24 (ENSHBUG00000003668)	slc6a9 (ENSHBUG00000000086)	klf17 (ENSHBUG00000003715)
Haplochromini_A	ANCESTRAL SPECIES	48	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.x #22	ENSGT00950000182977.B.b.a.c.b.a	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Haplochromini_B	ANCESTRAL SPECIES	52	ENSGT00980000199831	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000165806	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.x #22	ENSGT00950000182977.B.b.a.c.b.a	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Eastern happy	MODERN SPECIES	9	homeza (ENSACLG00000020035)	zp3f.1 (ENSACLG00000020039)	zp3f.2 (ENSACLG00000020065)	ENSACLG00000020133	ap1g2 (ENSACLG00000020142)	prmt5 (ENSACLG00000020188) #13	PSMB11 (ENSACLG00000020225)	psmb5 (ENSACLG00000020616) #9	ENSACLG00000020661 #8	carmil3 (ENSACLG00000020697)	ENSACLG00000021135	rem2 (ENSACLG00000021141) #15	ENSACLG00000021188	TGM1 (ENSACLG00000021214)	abhd4 (ENSACLG00000021248) #21	dad1 (ENSACLG00000021275) #22	ENSACLG00000021287	ENSACLG00000021292	LRRC24 (ENSACLG00000021312)	slc6a9 (ENSACLG00000021317)	klf17 (ENSACLG00000021363)	rnf220a (ENSACLG00000021388)	RNF220 (ENSACLG00000021402)	ENSACLG00000021422	tmem53 (ENSACLG00000021429)	toe1 (ENSACLG00000021437)	si:ch73-382f3.1 (ENSACLG00000021454)	selenop2 (ENSACLG00000021462)	elovl8a (ENSACLG00000021491)	fabp6 (ENSACLG00000021505)	zswim5 (ENSACLG00000021550)
Zebra mbuna	MODERN SPECIES	1100	zp3f.1 (ENSMZEG00005012205)	zp3f.2 (ENSMZEG00005012222)	ap1g2 (ENSMZEG00005012243)	ENSMZEG00005012296	prmt5 (ENSMZEG00005012334) #13	PSMB11 (ENSMZEG00005012375)	psmb5 (ENSMZEG00005013801) #9	ENSMZEG00005013947	ENSMZEG00005013953 #8	carmil3 (ENSMZEG00005013994)	ENSMZEG00005014095	rem2 (ENSMZEG00005014101) #15	ENSMZEG00005014104	TGM1 (ENSMZEG00005014117)	abhd4 (ENSMZEG00005014128) #21	dad1 (ENSMZEG00005014147) #22	ENSMZEG00005014157	LRRC24 (ENSMZEG00005014165)	slc6a9 (ENSMZEG00005014177)	klf17 (ENSMZEG00005014248)	rnf220a (ENSMZEG00005014266)	tmem53 (ENSMZEG00005014296)	toe1 (ENSMZEG00005014305)	si:ch73-382f3.1 (ENSMZEG00005014313)	selenop2 (ENSMZEG00005014320)	elovl8a (ENSMZEG00005014326)	fabp6 (ENSMZEG00005014334)	zswim5 (ENSMZEG00005014349)	urod (ENSMZEG00005014370)	lyn (ENSMZEG00005014385)	ENSMZEG00005014402
P. nyererei	MODERN SPECIES	393	ENSPNYG00000018324	zp3f.1 (ENSPNYG00000018361)	zp3f.2 (ENSPNYG00000018379)	ENSPNYG00000018424	ap1g2 (ENSPNYG00000018686)	prmt5 (ENSPNYG00000019059) #13	PSMB11 (ENSPNYG00000019144)	psmb5 (ENSPNYG00000019288) #9	CDH24 (ENSPNYG00000019326) #8	carmil3 (ENSPNYG00000019499)	ENSPNYG00000019584	rem2 (ENSPNYG00000019604) #15	ENSPNYG00000019673	TGM1 (ENSPNYG00000019703)	abhd4 (ENSPNYG00000019734) #21	dad1 (ENSPNYG00000019752) #22	ENSPNYG00000019762	LRRC24 (ENSPNYG00000019773)	slc6a9 (ENSPNYG00000019793)	klf17 (ENSPNYG00000019824)	rnf220a (ENSPNYG00000019851)	tmem53 (ENSPNYG00000019904)	toe1 (ENSPNYG00000019914)	si:ch73-382f3.1 (ENSPNYG00000019944)	selenop2 (ENSPNYG00000019959)	elovl8a (ENSPNYG00000019978)	fabp6 (ENSPNYG00000019997)	zswim5 (ENSPNYG00000020072)	urod (ENSPNYG00000020125)	lyn (ENSPNYG00000020151)	ENSPNYG00000020165
Lyretail cichlid	MODERN SPECIES	385	dhrs1 (ENSNBRG00000017852)	homeza (ENSNBRG00000017880)	zp3f.1 (ENSNBRG00000017898)	zp3f.2 (ENSNBRG00000017947)	nedd8l (ENSNBRG00000017992)	ap1g2 (ENSNBRG00000018015)	prmt5 (ENSNBRG00000018087) #13	PSMB11 (ENSNBRG00000018149)	psmb5 (ENSNBRG00000018286) #9	CDH24 (ENSNBRG00000018340) #8	carmil3 (ENSNBRG00000018587)	rem2 (ENSNBRG00000018667) #15	ENSNBRG00000018695	TGM1 (ENSNBRG00000018786)	abhd4 (ENSNBRG00000018799) #21	dad1 (ENSNBRG00000018829) #22	ENSNBRG00000018837	LRRC24 (ENSNBRG00000018860)	slc6a9 (ENSNBRG00000018893)	ENSNBRG00000018992	rnf220a (ENSNBRG00000019014)	tmem53 (ENSNBRG00000019078)	toe1 (ENSNBRG00000019107)	si:ch73-382f3.1 (ENSNBRG00000019136)	selenop2 (ENSNBRG00000019158)	elovl8a (ENSNBRG00000019190)	fabp6 (ENSNBRG00000019210)	zswim5 (ENSNBRG00000019262)	urod (ENSNBRG00000019316)	lyn (ENSNBRG00000019416)	ENSNBRG00000019814
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	234																ENSGT00390000003324.y #22	ENSGT00950000182977.B.b.a.c.b.b
Lyretail cichlid	MODERN SPECIES	467																dad1 (ENSNBRG00000018444) #22	ENSNBRG00000018428	ENSNBRG00000018400	ENSNBRG00000018379	ENSNBRG00000018266	ENSNBRG00000018189	vbp1 (ENSNBRG00000018132)	RAB39B (ENSNBRG00000018106)	zgc:162171 (ENSNBRG00000018099)	ENSNBRG00000018017	zgc:92429 (ENSNBRG00000017976)	ENSNBRG00000017837	ENSNBRG00000017798	zgc:109889 (ENSNBRG00000017769)	htr2cl1 (ENSNBRG00000017742)	ENSNBRG00000017702
Haplochromini	ANCESTRAL SPECIES	235																ENSGT00390000003324.y #22	ENSGT00950000182977.B.b.a.c.b.b
Haplochromini_A	ANCESTRAL SPECIES	241																ENSGT00390000003324.y #22	ENSGT00950000182977.B.b.a.c.b.b
P. nyererei	MODERN SPECIES	504																dad1 (ENSPNYG00000019043) #22	ENSPNYG00000019097	ENSPNYG00000019123	ENSPNYG00000019168	vbp1 (ENSPNYG00000019264)	RAB39B (ENSPNYG00000019276)	zgc:162171 (ENSPNYG00000019295)	ENSPNYG00000019331	ENSPNYG00000019435	zgc:92429 (ENSPNYG00000019495)	ENSPNYG00000019537	ENSPNYG00000019552	ENSPNYG00000019633	zgc:109889 (ENSPNYG00000019641)	ENSPNYG00000019668	htr2cl1 (ENSPNYG00000019682)
Nile tilapia	MODERN SPECIES	9	homeza (ENSONIG00000028704)	ENSONIG00000015547	zp3f.1 (ENSONIG00000015544)	zp3f.2 (ENSONIG00000015542)	nedd8l (ENSONIG00000035401)	ap1g2 (ENSONIG00000015540)	prmt5 (ENSONIG00000015538) #13	PSMB11 (ENSONIG00000003130)	psmb5 (ENSONIG00000015536) #9	ENSONIG00000015521 #8	carmil3 (ENSONIG00000009088)	rem2 (ENSONIG00000036246) #15	ENSONIG00000009085	TGM1 (ENSONIG00000009083)	abhd4 (ENSONIG00000009082) #21	dad1 (ENSONIG00000009081) #22	ENSONIG00000034423	LRRC24 (ENSONIG00000009080)	slc6a9 (ENSONIG00000009062)	klf17 (ENSONIG00000042837)	rnf220a (ENSONIG00000009056)	tmem53 (ENSONIG00000009054)	toe1 (ENSONIG00000009053)	ENSONIG00000037312	ENSONIG00000009050	elovl8a (ENSONIG00000009048)	fabp6 (ENSONIG00000009047)	zswim5 (ENSONIG00000009046)	urod (ENSONIG00000009037)	lyn (ENSONIG00000009035)	ENSONIG00000027427
Midas cichlid	MODERN SPECIES	754								PSMB11 (ENSACIG00000005094)	psmb5 (ENSACIG00000004798) #9	CDH24 (ENSACIG00000004696) #8	carmil3 (ENSACIG00000004617)	rem2 (ENSACIG00000004557) #15	ENSACIG00000004491	TGM1 (ENSACIG00000004394)	abhd4 (ENSACIG00000004371) #21	dad1 (ENSACIG00000004367) #22	ENSACIG00000004349	LRRC24 (ENSACIG00000004339)	slc6a9 (ENSACIG00000004320)	ENSACIG00000004302	rnf220a (ENSACIG00000004281)	RNF220 (ENSACIG00000004274)	tmem53 (ENSACIG00000004241)	toe1 (ENSACIG00000004175)	si:ch73-382f3.1 (ENSACIG00000004154)	selenop2 (ENSACIG00000004125)	elovl8a (ENSACIG00000003913)	fabp6 (ENSACIG00000003866)	zswim5 (ENSACIG00000003824)	urod (ENSACIG00000003785)	lyn (ENSACIG00000003036)
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Oryzias	ANCESTRAL SPECIES	12	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000154952.a.b.gb
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00970000197307	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000154952.a.b.gb
Japanese Medaka HdrR	DUPLICATION
Japanese Medaka HdrR	MODERN SPECIES	8	ENSORLG00000012225	zp3f.1 (ENSORLG00000012249)	zp3f.2 (ENSORLG00000012273)	ap1g2 (ENSORLG00000012317)	ENSORLG00000027923	prmt5 (ENSORLG00000012353) #13	ENSORLG00000022851	psmb5 (ENSORLG00000026171) #9	ENSORLG00000012385 #8	carmil3 (ENSORLG00000012421)	ENSORLG00000023282	rem2 (ENSORLG00000029976) #15	ENSORLG00000012446	ENSORLG00000012464	abhd4 (ENSORLG00000012481) #21	dad1 (ENSORLG00000012492) #22	ENSORLG00000024540	ENSORLG00000022201	ENSORLG00000022437	ENSORLG00000012498	slc6a9 (ENSORLG00000012525)	klf17 (ENSORLG00000012539)	rnf220a (ENSORLG00000012580)	RNF220 (ENSORLG00000012587)	ENSORLG00000025807	tmem53 (ENSORLG00000023278)	toe1 (ENSORLG00000012609)	si:ch73-382f3.1 (ENSORLG00000012612)	ENSORLG00000023036	ENSORLG00000012616	elovl8a (ENSORLG00000030509)
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000021854	ENSORLG00000023924	ENSORLG00000029372	ENSORLG00000026089	ENSORLG00000025965	mtm1 (ENSORLG00000020613)	NAT16 (ENSORLG00000020609)	acox3 (ENSORLG00000020600)	HTRA3 (ENSORLG00000025299)	ENSORLG00000027122	ENSORLG00000020606	ENSORLG00000029412	ENSORLG00000024261	ENSORLG00000022150	ENSORLG00000028471	dad1 (ENSORLG00000030501) #22	ENSORLG00000025187	ENSORLG00000022892	ENSORLG00000024054	ENSORLG00000028988	ENSORLG00000023690	ENSORLG00000029207	ENSORLG00000027080	ENSORLG00000022169	ENSORLG00000022602	ENSORLG00000027214	ENSORLG00000000272	ENSORLG00000022648	ENSORLG00000019376	ENSORLG00000026405	ENSORLG00000023635
Chinese medaka	MODERN SPECIES	442	ENSOSIG00000013378	zp3f.2 (ENSOSIG00000013376)	nedd8l (ENSOSIG00000013373)	ap1g2 (ENSOSIG00000013345)	prmt5 (ENSOSIG00000013241) #13	PSMB11 (ENSOSIG00000013140)	psmb5 (ENSOSIG00000013136) #9	CDH24 (ENSOSIG00000013132) #8	carmil3 (ENSOSIG00000013131)	rem2 (ENSOSIG00000013129) #15	ENSOSIG00000013127	ENSOSIG00000013126 #15	ENSOSIG00000013125	TGM1 (ENSOSIG00000011433)	abhd4 (ENSOSIG00000011419) #21	dad1 (ENSOSIG00000011417) #22	ENSOSIG00000011415	LRRC24 (ENSOSIG00000011412)	slc6a9 (ENSOSIG00000011409)	klf17 (ENSOSIG00000011400)	rnf220a (ENSOSIG00000011358)	ENSOSIG00000011352	tmem53 (ENSOSIG00000011350)	toe1 (ENSOSIG00000011343)	ENSOSIG00000011339	elovl8a (ENSOSIG00000011336)	fabp6 (ENSOSIG00000011333)	zswim5 (ENSOSIG00000009652)
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000157797	ENSGT00950000182893.a.b.e.b	ENSGT00740000115581.e	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000154952.a.b.gb
Javanese ricefish	MODERN SPECIES	8	mmp14b (ENSOJAG00000008770) #17	ENSOJAG00000009703 #7	si:ch211-14a17.11 (ENSOJAG00000009718)	dhrs1 (ENSOJAG00000009737)	homeza (ENSOJAG00000009745)	ENSOJAG00000009754	zp3f.2 (ENSOJAG00000009883)	nedd8l (ENSOJAG00000009946)	ap1g2 (ENSOJAG00000010068)	psmb5 (ENSOJAG00000011146) #9	ENSOJAG00000011202 #8	carmil3 (ENSOJAG00000011411)	rem2 (ENSOJAG00000011612) #15	ENSOJAG00000011636	abhd4 (ENSOJAG00000011882) #21	dad1 (ENSOJAG00000011908) #22	ENSOJAG00000011931	LRRC24 (ENSOJAG00000011935)	slc6a9 (ENSOJAG00000011958)	klf17 (ENSOJAG00000012380)	rnf220a (ENSOJAG00000012396)	ENSOJAG00000012491	tmem53 (ENSOJAG00000012501)	toe1 (ENSOJAG00000012512)	ENSOJAG00000012538	ENSOJAG00000012546	elovl8a (ENSOJAG00000012557)	fabp6 (ENSOJAG00000012576)	zswim5 (ENSOJAG00000012601)	urod (ENSOJAG00000012902)	lyn (ENSOJAG00000013277)
Indian medaka	MODERN SPECIES	10	homeza (ENSOMEG00000013056)	zp3f.2 (ENSOMEG00000013095)	nedd8l (ENSOMEG00000013114)	ap1g2 (ENSOMEG00000013184)	prmt5 (ENSOMEG00000013235) #13	PSMB11 (ENSOMEG00000013392)	psmb5 (ENSOMEG00000013456) #9	ENSOMEG00000013488 #8	ENSOMEG00000013510	carmil3 (ENSOMEG00000013557)	ENSOMEG00000013587	rem2 (ENSOMEG00000013598) #15	ENSOMEG00000013624	TGM1 (ENSOMEG00000013664)	abhd4 (ENSOMEG00000013725) #21	dad1 (ENSOMEG00000013750) #22	ENSOMEG00000013802	LRRC24 (ENSOMEG00000013829)	slc6a9 (ENSOMEG00000013916)	klf17 (ENSOMEG00000013953)	rnf220a (ENSOMEG00000014085)	tmem53 (ENSOMEG00000000859)	toe1 (ENSOMEG00000014153)	si:ch73-382f3.1 (ENSOMEG00000014161)	ENSOMEG00000014177	elovl8a (ENSOMEG00000014198)	fabp6 (ENSOMEG00000014208)	zswim5 (ENSOMEG00000014250)	urod (ENSOMEG00000014283)	lyn (ENSOMEG00000014325)	ENSOMEG00000014346
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00950000182893.a.b.e.b	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00940000158610.d	ENSGT00940000153304.C	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302
Turquoise killifish	MODERN SPECIES	1618	HOMEZ (ENSNFUG00015007371)	NEDD8 (ENSNFUG00015007349)	ap1g2 (ENSNFUG00015007317)	prmt5 (ENSNFUG00015007261) #13	PSMB11 (ENSNFUG00015007228)	ENSNFUG00015007220	ENSNFUG00015007188 #8	ENSNFUG00015007185	ENSNFUG00015007181	ENSNFUG00015007179	REM2 (ENSNFUG00015007175) #15	AL954696.1 (ENSNFUG00015007164)	ENSNFUG00015007155	TGM1 (ENSNFUG00015006898)	ABHD4 (ENSNFUG00015006875) #21	dad1 (ENSNFUG00015006870) #22	ENSNFUG00015006867	LRRC24 (ENSNFUG00015006865)	ENSNFUG00015006863	slc6a9 (ENSNFUG00015006143)	klf17 (ENSNFUG00015006071)	TYW3 (ENSNFUG00015006062)	rnf220a (ENSNFUG00015006045)	ENSNFUG00015006039	TMEM53 (ENSNFUG00015006026)	TOE1 (ENSNFUG00015006021)	ENSNFUG00015006017	ENSNFUG00015006015	elovl8a (ENSNFUG00015006010)	fabp6 (ENSNFUG00015006003)	ENSNFUG00015006002
Mangrove rivulus	MODERN SPECIES	55	homeza (ENSKMAG00000020275)	zp3f.1 (ENSKMAG00000020285)	zp3f.2 (ENSKMAG00000020293)	ap1g2 (ENSKMAG00000020315)	nedd8l (ENSKMAG00000020347)	prmt5 (ENSKMAG00000020370) #13	PSMB11 (ENSKMAG00000020416)	psmb5 (ENSKMAG00000020473) #9	ENSKMAG00000020501 #8	carmil3 (ENSKMAG00000020527)	ENSKMAG00000020571	rem2 (ENSKMAG00000020585) #15	ENSKMAG00000020595	TGM1 (ENSKMAG00000020609)	abhd4 (ENSKMAG00000020626) #21	dad1 (ENSKMAG00000020654) #22	ENSKMAG00000020670	LRRC24 (ENSKMAG00000020682)	slc6a9 (ENSKMAG00000020705)	klf17 (ENSKMAG00000020731)	ENSKMAG00000020740	tyw3 (ENSKMAG00000020761)	rnf220a (ENSKMAG00000020808)	tmem53 (ENSKMAG00000020884)	toe1 (ENSKMAG00000020891)	si:ch73-382f3.1 (ENSKMAG00000020901)	ENSKMAG00000020909	ENSKMAG00000020929	fabp6 (ENSKMAG00000020956)	fabp6 (ENSKMAG00000020969)	fabp6 (ENSKMAG00000020978)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a.f	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Poecilia	ANCESTRAL SPECIES	19	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a.f	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
NAME_6	ANCESTRAL SPECIES	99								ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a.f	ENSGT00940000159286.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000175470
Amazon molly	MODERN SPECIES	302									ENSPFOG00000019458 #8	carmil3 (ENSPFOG00000019461)	ENSPFOG00000019462	rem2 (ENSPFOG00000019464) #15	ENSPFOG00000019465	TGM1 (ENSPFOG00000019468)	abhd4 (ENSPFOG00000019473) #21	dad1 (ENSPFOG00000019476) #22	ENSPFOG00000019478	LRRC24 (ENSPFOG00000019481)	slc6a9 (ENSPFOG00000019486)	klf17 (ENSPFOG00000019495)	rnf220a (ENSPFOG00000019506)	tmem53 (ENSPFOG00000019514)	toe1 (ENSPFOG00000019517)	si:ch73-382f3.1 (ENSPFOG00000023181)	ENSPFOG00000021732	elovl8a (ENSPFOG00000019522)	fabp6 (ENSPFOG00000019524)
Sailfin molly	MODERN SPECIES	1445											ENSPLAG00000008759	rem2 (ENSPLAG00000008753) #15	ENSPLAG00000008745	TGM1 (ENSPLAG00000008732)	abhd4 (ENSPLAG00000008722) #21	dad1 (ENSPLAG00000008716) #22	ENSPLAG00000008704
Guppy	MODERN SPECIES	447	nedd8l (ENSPREG00000022000)	ap1g2 (ENSPREG00000022013)	prmt5 (ENSPREG00000022051) #13	PSMB11 (ENSPREG00000022073)	psmb5 (ENSPREG00000022102) #9	ENSPREG00000022111	ENSPREG00000022116	ENSPREG00000022127 #8	ENSPREG00000022149	carmil3 (ENSPREG00000022193)	ENSPREG00000022304	rem2 (ENSPREG00000022309) #15	ENSPREG00000022318	TGM1 (ENSPREG00000022332)	abhd4 (ENSPREG00000022347) #21	dad1 (ENSPREG00000022361) #22	ENSPREG00000022371	LRRC24 (ENSPREG00000022386)	slc6a9 (ENSPREG00000022396)	klf17 (ENSPREG00000022402)	rnf220a (ENSPREG00000000625)	RNF220 (ENSPREG00000000676)	tmem53 (ENSPREG00000000714)	ENSPREG00000000720	si:ch73-382f3.1 (ENSPREG00000000751)	selenop2 (ENSPREG00000000783)	elovl8a (ENSPREG00000000856)	fabp6 (ENSPREG00000000889)	zswim5 (ENSPREG00000000910)	urod (ENSPREG00000000988)	lyn (ENSPREG00000001001)
Platyfish	MODERN SPECIES	20	ENSXMAG00000027859	zp3f.1 (ENSXMAG00000000403)	zp3f.2 (ENSXMAG00000000411)	nedd8l (ENSXMAG00000000467)	ap1g2 (ENSXMAG00000000415)	prmt5 (ENSXMAG00000000469) #13	PSMB11 (ENSXMAG00000000491)	psmb5 (ENSXMAG00000000493) #9	ENSXMAG00000027495	ENSXMAG00000025427 #8	carmil3 (ENSXMAG00000006023)	rem2 (ENSXMAG00000026493) #15	ENSXMAG00000006038	TGM1 (ENSXMAG00000006045)	abhd4 (ENSXMAG00000026323) #21	dad1 (ENSXMAG00000006087) #22	ENSXMAG00000006093	ENSXMAG00000023918	ENSXMAG00000026563	LRRC24 (ENSXMAG00000029449)	slc6a9 (ENSXMAG00000019099)	klf17 (ENSXMAG00000010873)	rnf220a (ENSXMAG00000023715)	RNF220 (ENSXMAG00000011077)	ENSXMAG00000025097	tmem53 (ENSXMAG00000025667)	toe1 (ENSXMAG00000011102)	si:ch73-382f3.1 (ENSXMAG00000025805)	selenop2 (ENSXMAG00000011119)	elovl8a (ENSXMAG00000011120)	fabp6 (ENSXMAG00000021535)
NAME_4	DUPLICATION
NAME_4	ANCESTRAL SPECIES																	ENSGT00390000003324.ab #22
Mummichog	MODERN SPECIES	460											carmil3 (ENSFHEG00000006662)	ENSFHEG00000006690	rem2 (ENSFHEG00000006705) #15	ENSFHEG00000006723	TGM1 (ENSFHEG00000006766)	DAD1 (ENSFHEG00000000180) #22	abhd4 (ENSFHEG00000006808) #21	dad1 (ENSFHEG00000006829) #22	ENSFHEG00000006839	LRRC24 (ENSFHEG00000000187)
NAME_4	ANCESTRAL SPECIES	9	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT00940000157990.a.a	ENSGT00980000198654	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.bb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00940000160141.e.a	ENSGT00940000157263	ENSGT00940000163957.e.a	ENSGT00390000016573.c.b	ENSGT00390000000715	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000157139.b	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00940000154952.a.b.gb
Sheepshead minnow	MODERN SPECIES	874												camkk1a (ENSCVAG00000008933)	p2rx1 (ENSCVAG00000008962)	dhx33 (ENSCVAG00000008998)	abhd4 (ENSCVAG00000009062) #21	dad1 (ENSCVAG00000009077) #22	ENSCVAG00000009087	LRRC24 (ENSCVAG00000009098)	slc6a9 (ENSCVAG00000009134)	klf17 (ENSCVAG00000000250)	rnf220a (ENSCVAG00000009203)
Mummichog	MODERN SPECIES	460									carmil3 (ENSFHEG00000006662)	ENSFHEG00000006690	rem2 (ENSFHEG00000006705) #15	ENSFHEG00000006723	TGM1 (ENSFHEG00000006766)	DAD1 (ENSFHEG00000000180) #22	abhd4 (ENSFHEG00000006808) #21	dad1 (ENSFHEG00000006829) #22	ENSFHEG00000006839	LRRC24 (ENSFHEG00000000187)
Protacanthopterygii	ANCESTRAL SPECIES	144	ENSGT00390000003464	ENSGT00740000116213	ENSGT01100000263662	ENSGT00530000063347.A.b	ENSGT00390000007600	ENSGT00390000017123.a	ENSGT00940000159251	ENSGT00950000182879.a.b.a.a.b.a	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00940000159829.d	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a	ENSGT00390000017571	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00950000183039.B.b.c	ENSGT00940000153421.a.a.b	ENSGT01030000234598.a.b	ENSGT00940000155789	ENSGT00390000015332
Northern pike	MODERN SPECIES	7	ENSELUG00000012158	ENSELUG00000012150	ENSELUG00000012123	IPO13 (ENSELUG00000001498)	pfas (ENSELUG00000011791)	ENSELUG00000011714	hook1 (ENSELUG00000011682)	cyp2n13 (ENSELUG00000011542)	cyp2ad3 (ENSELUG00000011482)	ENSELUG00000011369	ENSELUG00000011263	ENSELUG00000011204	rabggta (ENSELUG00000011184)	tgm1l4 (ENSELUG00000011151)	ABHD4 (ENSELUG00000011096) #21	dad1 (ENSELUG00000011056) #22	ENSELUG00000028538	ENSELUG00000029065	ENSELUG00000034277	ENSELUG00000010986	ENSELUG00000010973	ENSELUG00000025953	ENSELUG00000010941	ENSELUG00000010930	impact (ENSELUG00000010893)	ATP11B (ENSELUG00000010730)	mccc1 (ENSELUG00000010299)	ENSELUG00000010234	kng1 (ENSELUG00000010213)	PIK3CA (ENSELUG00000010177)	ZMAT3 (ENSELUG00000010132)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00390000003324.cb #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000003324.cb #22
Salmo	ANCESTRAL SPECIES																	ENSGT00390000003324.cb #22
Atlantic salmon	MODERN SPECIES	1	zyg11 (ENSSSAG00000047821)	ENSSSAG00000103469	ENSSSAG00000118274	ENSSSAG00000047721	mmachc (ENSSSAG00000047704)	ENSSSAG00000047682	ENSSSAG00000095995	ENSSSAG00000063256	pfas (ENSSSAG00000045028)	ENSSSAG00000044974	hook1 (ENSSSAG00000042412)	ENSSSAG00000042311	ENSSSAG00000042273	ENSSSAG00000042261	ENSSSAG00000041726	ENSSSAG00000041684 #22	ENSSSAG00000097816	ENSSSAG00000108327	ENSSSAG00000121279	ENSSSAG00000103213	impact (ENSSSAG00000041439)	ENSSSAG00000094838	ENSSSAG00000038552	ENSSSAG00000071297	PIK3CA (ENSSSAG00000071257)	ZMAT3 (ENSSSAG00000071245)	ENSSSAG00000071241	tbl1xr1 (ENSSSAG00000071183)	naaladl2 (ENSSSAG00000071148)	nlgn1 (ENSSSAG00000116812)	spata16 (ENSSSAG00000071025)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	491									ENSGT00940000153231.B	ENSGT00530000063347.A.b.f	ENSGT00390000017123.a.c	ENSGT00940000159251.g	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a #22	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d	ENSGT01030000234598.a.b.e.b
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT01060000248544.a.a.b.a.b.j	ENSGT00950000182951.B.g	ENSGT00940000155091.eb.a.c	ENSGT00940000154079.a.e.b	ENSGT00990000213115	ENSGT00530000063187.B.c.h	ENSGT00940000158798.k	ENSGT00940000156906.j.a.a.d	ENSGT00940000153231.B	ENSGT00530000063347.A.b.f	ENSGT00390000017123.a.c	ENSGT00940000159251.g	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a #22	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d	ENSGT01030000234598.a.b.e.b	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000162061.a.a.f	ENSGT01060000248544.a.a.b.a.b.j	ENSGT00950000182951.B.g	ENSGT00940000155091.eb.a.c	ENSGT00940000154079.a.e.b	ENSGT00530000063187.B.c.h	ENSGT00940000158798.k	ENSGT00940000156906.j.a.a.d	ENSGT00940000153231.B	ENSGT00530000063347.A.b.f	ENSGT00390000017123.a.c	ENSGT00940000159251.g	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a #22	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb	ENSGT00940000159676.a.c
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000162061.a.a.f	ENSGT01060000248544.a.a.b.a.b.j	ENSGT00950000182951.B.g	ENSGT00940000155091.eb.a.c	ENSGT00940000154079.a.e.b	ENSGT00530000063187.B.c.h	ENSGT00940000158798.k	ENSGT00940000156906.j.a.a.d	ENSGT00940000153231.B	ENSGT00530000063347.A.b.f	ENSGT00940000159251.g	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01020000230367.e.b.a.b.b.a.a.a.b.a.a.b.a	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a #22	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00940000155531.a.a.m.b	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00390000018199.b.k	ENSGT00940000153421.a.a.b.d	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb
Coho salmon	MODERN SPECIES	1	zyg11 (ENSOKIG00005016608)	echdc2 (ENSOKIG00005016082)	ENSOKIG00005016031	ENSOKIG00005016024	rpf1 (ENSOKIG00005015098)	IPO13 (ENSOKIG00005014967)	ENSOKIG00005014945	HOOK1 (ENSOKIG00005014787)	ENSOKIG00005014782	ENSOKIG00005014776	ENSOKIG00005014771	cyp2ad2 (ENSOKIG00005014640)	rabggta (ENSOKIG00005014587)	ENSOKIG00005014575	TGM1 (ENSOKIG00005014486)	dad1 (ENSOKIG00005014471) #22	ENSOKIG00005014467	si:ch211-264f5.2 (ENSOKIG00005014455)	ENSOKIG00005014450	ENSOKIG00005014415	ATP11B (ENSOKIG00005014020)	MCCC1 (ENSOKIG00005013471)	ENSOKIG00005013409	ENSOKIG00005013401	ZMAT3 (ENSOKIG00005013396)	ENSOKIG00005013386	ENSOKIG00005013380	ENSOKIG00005013373	ENSOKIG00005013368	tbl1xr1a (ENSOKIG00005013264)	ENSOKIG00005013213
Chinook salmon	MODERN SPECIES		prdx6 (ENSOTSG00005027265)	jun (ENSOTSG00005027264)	faslg (ENSOTSG00005027262)	angptl1a (ENSOTSG00005027261)	ralgps2 (ENSOTSG00005027260)	zyg11 (ENSOTSG00005027259)	echdc2 (ENSOTSG00005027118)	ENSOTSG00005027112	rpf1 (ENSOTSG00005027108)	IPO13 (ENSOTSG00005026818)	hook1 (ENSOTSG00005026676)	cyp2ad3 (ENSOTSG00005026478)	rabggta (ENSOTSG00005026477)	ENSOTSG00005026476	TGM1 (ENSOTSG00005026475)	dad1 (ENSOTSG00005026473) #22	ENSOTSG00005026472	si:ch211-264f5.2 (ENSOTSG00005026471)	ENSOTSG00005026470	ENSOTSG00005026469	ENSOTSG00005026468	ATP11B (ENSOTSG00005026101)	mccc1 (ENSOTSG00005022515)	ENSOTSG00005022503	ENSOTSG00005022502	PIK3CA (ENSOTSG00005022499)	ZMAT3 (ENSOTSG00005022498)	ENSOTSG00005022497	ENSOTSG00005022496	tbl1xr1a (ENSOTSG00005022436)	nlgn1 (ENSOTSG00005022421)
Rainbow trout	MODERN SPECIES	22	fam20b (ENSOMYG00000036843)	angptl1a (ENSOMYG00000036830)	ENSOMYG00000050345	ralgps2 (ENSOMYG00000036414)	zyg11 (ENSOMYG00000035955)	ENSOMYG00000035860	ENSOMYG00000035876	rpf1 (ENSOMYG00000034857)	ENSOMYG00000034590	ENSOMYG00000034512	ENSOMYG00000034338	ENSOMYG00000070794	cyp2ad2 (ENSOMYG00000034280)	ENSOMYG00000034232	ENSOMYG00000034175	dad1 (ENSOMYG00000034133) #22	ENSOMYG00000034124	ENSOMYG00000034109	ENSOMYG00000034101	ENSOMYG00000034097	ENSOMYG00000034087	ENSOMYG00000033839	ENSOMYG00000053219	ENSOMYG00000033398	ENSOMYG00000033213	ENSOMYG00000058600	ENSOMYG00000061418	ENSOMYG00000032941	ENSOMYG00000032925	ENSOMYG00000067416	tbl1xr1a (ENSOMYG00000032826)
Salmo	ANCESTRAL SPECIES	20	ENSGT01060000248544.a.a.b.a.b.j	ENSGT00950000182951.B.g	ENSGT00940000154079.a.e.b	ENSGT00940000155091.eb.a.c	ENSGT00990000213115	ENSGT00530000063187.B.c.h	ENSGT00940000158798.k	ENSGT00940000156906.j.a.a.d	ENSGT00940000153231.B	ENSGT00530000063347.A.b.f	ENSGT00390000017123.a.c	ENSGT00940000159251.g	ENSGT00950000182879.a.b.a.a.b.b.b.b	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00390000003324.db.a #22	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00950000182977.B.b.a.c.a	ENSGT00940000163206.b.a.a.e	ENSGT00390000017571.n	ENSGT00940000156162.C.c	ENSGT00940000156941.d	ENSGT00950000182899.C.a.d	ENSGT00950000182930.B.d	ENSGT00730000111202.f	ENSGT00950000183039.B.b.c.d	ENSGT00940000153421.a.a.b.d	ENSGT01030000234598.a.b.e.b	ENSGT00940000155789.gb.b	ENSGT00940000156299.cb	ENSGT00940000161734.o.a
River trout	MODERN SPECIES	33	faslg (ENSSTUG00000015047)	fam20b (ENSSTUG00000015050)	ralgps2 (ENSSTUG00000015083)	angptl1a (ENSSTUG00000015546)	zyg11 (ENSSTUG00000015608)	ENSSTUG00000015734	echdc2 (ENSSTUG00000015766)	rpf1 (ENSSTUG00000016115)	IPO13 (ENSSTUG00000016807)	ENSSTUG00000018482	hook1 (ENSSTUG00000018502)	cyp2ad3 (ENSSTUG00000018745)	rabggta (ENSSTUG00000018836)	ENSSTUG00000018886	ENSSTUG00000018897	dad1 (ENSSTUG00000019015) #22	ENSSTUG00000019025	si:ch211-264f5.2 (ENSSTUG00000019039)	ENSSTUG00000003931	ENSSTUG00000003939	ENSSTUG00000003945	ATP11B (ENSSTUG00000004006)	mccc1 (ENSSTUG00000004870)	ENSSTUG00000006058	ENSSTUG00000006080	ZMAT3 (ENSSTUG00000006140)	ENSSTUG00000006150	tbl1xr1a (ENSSTUG00000006160)	ENSSTUG00000006234	nlgn1 (ENSSTUG00000006246)	ENSSTUG00000006294
Atlantic salmon	MODERN SPECIES	15	angptl1a (ENSSSAG00000057571)	fam20b (ENSSSAG00000057047)	ralgps2 (ENSSSAG00000057071)	ENSSSAG00000058122	zyg11 (ENSSSAG00000057652)	ECHD2 (ENSSSAG00000058175)	ENSSSAG00000085632	rpf1 (ENSSSAG00000059443)	ENSSSAG00000046112	ENSSSAG00000109281	ENSSSAG00000063536	ENSSSAG00000084133	cyp2ad2 (ENSSSAG00000067784)	rabggta (ENSSSAG00000067852)	ENSSSAG00000067898	dad1 (ENSSSAG00000068386) #22	ENSSSAG00000107583	ENSSSAG00000068393	ENSSSAG00000089031	ENSSSAG00000068412	ENSSSAG00000068425	MCCA (ENSSSAG00000068531)	ENSSSAG00000068757	ENSSSAG00000082331	ZMAT3 (ENSSSAG00000105821)	tbl1xr1a (ENSSSAG00000068792)	NAALADL2 (ENSSSAG00000068817)	ENSSSAG00000101389	nlgn1 (ENSSSAG00000071052)	ENSSSAG00000105961	ENSSSAG00000068835
Huchen	MODERN SPECIES	200					mb (ENSHHUG00000030266)	serhl (ENSHHUG00000030268)	septin3 (ENSHHUG00000030280)	ENSHHUG00000030327	rpf1 (ENSHHUG00000030334)	IPO13 (ENSHHUG00000030407)	ENSHHUG00000030419	hook1 (ENSHHUG00000030434)	cyp2ad2 (ENSHHUG00000030518)	rabggta (ENSHHUG00000030708)	TGM1 (ENSHHUG00000030743)	dad1 (ENSHHUG00000030863) #22	ENSHHUG00000030876	ENSHHUG00000030878	ENSHHUG00000030886	ENSHHUG00000030889	impact (ENSHHUG00000030896)	ATP11B (ENSHHUG00000030910)	mccc1 (ENSHHUG00000031545)	ENSHHUG00000031980	ENSHHUG00000031990	ENSHHUG00000032000	ZMAT3 (ENSHHUG00000032006)	ENSHHUG00000032010	tbl1xr1a (ENSHHUG00000032017)	ENSHHUG00000032105
Salmoninae	ANCESTRAL SPECIES	115														ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b #22	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c	ENSGT01030000234598.a.b.f	ENSGT01030000234598.a.b.e.a	ENSGT00940000155789.gb.a
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00390000004835	ENSGT00530000063187.B.c.g	ENSGT00940000158798.l	ENSGT00940000156906.j.a.a.c	ENSGT00390000003464	ENSGT00740000116213	ENSGT01100000263662	ENSGT00530000063347.A.b.e	ENSGT00390000007600	ENSGT00390000017123.a.d	ENSGT00940000159251.h	ENSGT00940000159829.d	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b #22	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c	ENSGT01030000234598.a.b.f	ENSGT01030000234598.a.b.e.a	ENSGT00940000155789.gb.a
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000154079.a.f	ENSGT00390000004835	ENSGT00530000063187.B.c.g	ENSGT00940000156906.j.a.a.c	ENSGT00390000003464	ENSGT00740000116213	ENSGT01100000263662	ENSGT00530000063347.A.b.e	ENSGT00390000007600	ENSGT00390000017123.a.d	ENSGT00940000159251.h	ENSGT00940000159829.d	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b #22	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c	ENSGT01030000234598.a.b.f	ENSGT00940000155789.gb.a	ENSGT00390000015332
Rainbow trout	MODERN SPECIES	26	coa7 (ENSOMYG00000032242)	zyg11 (ENSOMYG00000032099)	ENSOMYG00000031991	ENSOMYG00000031964	ENSOMYG00000031933	ENSOMYG00000031853	pfas (ENSOMYG00000031760)	ENSOMYG00000065034	ENSOMYG00000031615	hook1 (ENSOMYG00000031069)	ENSOMYG00000067285	ENSOMYG00000030932	ENSOMYG00000030908	ENSOMYG00000075429	ENSOMYG00000030462	ENSOMYG00000030269 #22	ENSOMYG00000030255	ENSOMYG00000030235	ENSOMYG00000030164	impact (ENSOMYG00000030139)	ENSOMYG00000030009	ENSOMYG00000025718	ENSOMYG00000024498	PIK3CA (ENSOMYG00000024649)	ZMAT3 (ENSOMYG00000024536)	ENSOMYG00000024518	tbl1xr1a (ENSOMYG00000024336)	NAALADL2 (ENSOMYG00000024109)	ENSOMYG00000064559	ENSOMYG00000057319	nlgn1 (ENSOMYG00000024031)
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000155091.eb.a.d	ENSGT00390000004835	ENSGT00530000063187.B.c.g	ENSGT00940000156906.j.a.a.c	ENSGT00390000003464	ENSGT00740000116213	ENSGT01100000263662	ENSGT00530000063347.A.b.e	ENSGT00390000007600	ENSGT00390000017123.a.d	ENSGT00940000159251.h	ENSGT00940000159829.d	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b #22	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c	ENSGT01030000234598.a.b.f	ENSGT00940000155789.gb.a	ENSGT00390000015332
Coho salmon	MODERN SPECIES	4	ralgps2 (ENSOKIG00005014277)	angptl1a (ENSOKIG00005015881)	coa7 (ENSOKIG00005015898)	zyg11 (ENSOKIG00005015951)	ENSOKIG00005017270	mmachc (ENSOKIG00005017278)	ENSOKIG00005017286	ENSOKIG00005017301	IPO13 (ENSOKIG00005017404)	pfas (ENSOKIG00005019165)	ENSOKIG00005020996	hook1 (ENSOKIG00005021079)	ENSOKIG00005021833	ENSOKIG00005021879	TGM1 (ENSOKIG00005021912)	DAD1 (ENSOKIG00005021983) #22	ENSOKIG00005021993	ENSOKIG00005022026	ENSOKIG00005022056	impact (ENSOKIG00005022072)	ATP11B (ENSOKIG00005022159)	mccc1 (ENSOKIG00005022948)	ENSOKIG00005024080	ENSOKIG00005024104	PIK3CA (ENSOKIG00005024126)	ZMAT3 (ENSOKIG00005024220)	ENSOKIG00005024232	tbl1xr1a (ENSOKIG00005015320)	NAALADL2 (ENSOKIG00005015359)	ENSOKIG00005015372	nlgn1 (ENSOKIG00005015390)
Chinook salmon	MODERN SPECIES	29	fam20b (ENSOTSG00005037316)	angptl1a (ENSOTSG00005037315)	ralgps2 (ENSOTSG00005036809)	coa7 (ENSOTSG00005036805)	zyg11 (ENSOTSG00005036608)	ENSOTSG00005036602	mmachc (ENSOTSG00005036600)	ENSOTSG00005036599	IPO13 (ENSOTSG00005033950)	pfas (ENSOTSG00005031773)	ENSOTSG00005031767	hook1 (ENSOTSG00005031481)	ENSOTSG00005031478	ENSOTSG00005031477	TGM1 (ENSOTSG00005031337)	dad1 (ENSOTSG00005031335) #22	ENSOTSG00005031334	ENSOTSG00005031333	ENSOTSG00005031063	impact (ENSOTSG00005031054)	ATP11B (ENSOTSG00005030961)	mccc1 (ENSOTSG00005024548)	ENSOTSG00005024538	ENSOTSG00005024535	PIK3CA (ENSOTSG00005024533)	ZMAT3 (ENSOTSG00005024531)	ENSOTSG00005024530	tbl1xr1a (ENSOTSG00005024529)	NAALADL2 (ENSOTSG00005024491)	nlgn1 (ENSOTSG00005024476)	SPATA16 (ENSOTSG00005024467)
Salmo	ANCESTRAL SPECIES	14	ENSGT00530000063187.B.c.g	ENSGT00940000158798.l	ENSGT00940000166084.A.a.b.b.a.b.a.b.b.a.b.a.b	ENSGT00940000156906.j.a.a.c	ENSGT00390000003464	ENSGT00740000116213	ENSGT01100000263662	ENSGT00530000063347.A.b.e	ENSGT00390000007600	ENSGT00390000017123.a.d	ENSGT00940000159251.h	ENSGT00940000159829.d	ENSGT00940000155776.a	ENSGT00940000177341	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00390000003324.db.b #22	ENSGT00940000165893	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.a	ENSGT00940000163206.b.a.a.f	ENSGT00390000017571.m	ENSGT00940000156162.C.d	ENSGT00940000156941.c	ENSGT00950000182899.C.a.c	ENSGT00950000182930.B.c	ENSGT00940000155531.a.a.m.a	ENSGT00730000111202.e	ENSGT00950000183039.B.b.c.c	ENSGT00940000153421.a.a.b.c	ENSGT01030000234598.a.b.e.a	ENSGT00940000155789.gb.a
River trout	MODERN SPECIES	14	ENSSTUG00000049913	ENSSTUG00000049911	ENSSTUG00000049908	mmachc (ENSSTUG00000049904)	ENSSTUG00000049901	ENSSTUG00000049898	IPO13 (ENSSTUG00000049813)	pfas (ENSSTUG00000049681)	ENSSTUG00000049657	hook1 (ENSSTUG00000049439)	ENSSTUG00000049412	ENSSTUG00000049407	ENSSTUG00000049402	ENSSTUG00000049399	TGM1 (ENSSTUG00000049328)	dad1 (ENSSTUG00000049311) #22	ENSSTUG00000049298	ENSSTUG00000049291	impact (ENSSTUG00000049285)	ATP11B (ENSSTUG00000049211)	mccc1 (ENSSTUG00000049028)	ENSSTUG00000049015	ENSSTUG00000049010	PIK3CA (ENSSTUG00000048994)	ZMAT3 (ENSSTUG00000048987)	ENSSTUG00000048984	tbl1xr1a (ENSSTUG00000048955)	NAALADL2 (ENSSTUG00000048867)	nlgn1 (ENSSTUG00000048855)	SPATA16 (ENSSTUG00000048820)	ect2 (ENSSTUG00000048325)
Huchen	MODERN SPECIES	1298													ENSHHUG00000046353	TGM1 (ENSHHUG00000046358)	ABHD4 (ENSHHUG00000046372) #21	dad1 (ENSHHUG00000046401) #22	ENSHHUG00000046421	ENSHHUG00000046433	ENSHHUG00000046454	impact (ENSHHUG00000046526)	ATP11B (ENSHHUG00000046537)	mccc1 (ENSHHUG00000046781)	ENSHHUG00000047045	ENSHHUG00000047048	PIK3CA (ENSHHUG00000047051)	ZMAT3 (ENSHHUG00000047058)	ENSHHUG00000047064
Otomorpha	ANCESTRAL SPECIES	38	ENSGT00740000115581.e	ENSGT01030000234567.A.b.c.g	ENSGT01030000234567.A.b.d	ENSGT00940000155856.bb	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b	ENSGT00390000001141 #13	ENSGT00940000162200.a.b	ENSGT00940000157841 #9	ENSGT00940000159567.a.a #8	ENSGT01100000263518.C	ENSGT00940000160062.a #15	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d	ENSGT00940000160141	ENSGT00390000004859.d	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.b	ENSGT01090000260052.a.a.a.a
Otophysi	DUPLICATION
Otophysi	DUPLICATION
Otophysi	ANCESTRAL SPECIES																	ENSGT00390000003324.eb.a #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00390000003324.eb.a #22
Cyprininae	ANCESTRAL SPECIES	3	ENSGT00390000006696.jc	ENSGT00940000159728.b	ENSGT00940000165811.c	ENSGT01040000240385.A.b.b.b.a.a.b.b.b.b	ENSGT01050000244939.a.a.b.a.b.c.b.a.b	ENSGT00950000182879.b.o.a	ENSGT00950000182879.b.p.b.a	ENSGT00950000182879.b.p.b.b	ENSGT00940000156988.g	ENSGT00940000159127.i	ENSGT00940000161304.a.a.c.b	ENSGT00940000161304.a.a.d	ENSGT00940000156073.c.b.a.a	ENSGT00940000160740.c.a.a	ENSGT00940000154327.b.f.b.a	ENSGT00390000003324.eb.a #22	ENSGT00410000025596.a.a.b	ENSGT00950000183149.B.c	ENSGT00940000158197.d.h	ENSGT00940000156473.e.c	ENSGT00390000017874.b.c	ENSGT00940000153185.a.a.b.e	ENSGT00940000163310.l.b	ENSGT00950000182835.d.a.k.b.b	ENSGT00940000155458.e.b.b	ENSGT00940000155308.c.bb	ENSGT00940000165533.d	ENSGT01050000244866.B.c.b.e	ENSGT01050000244806.b.a.a.a.a.b.a	ENSGT01050000244806.b.a.a.a.a.a	ENSGT00950000183094.b.a.m
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	15	ENSCARG00000010758	ENSCARG00000010755	ENSCARG00000010752	ednrab (ENSCARG00000010718)	ENSCARG00000010695	scube3 (ENSCARG00000007239)	ENSCARG00000007137	myl9a (ENSCARG00000007125)	DLGAP4 (ENSCARG00000007101)	ENSCARG00000007092	ENSCARG00000007025	pfkfb2a (ENSCARG00000006413)	ENSCARG00000006364	ENSCARG00000006352	ENSCARG00000006335	ENSCARG00000006318 #22	GMEB2 (ENSCARG00000006188)	pdyn (ENSCARG00000006170)	stk35 (ENSCARG00000006145)	ENSCARG00000006131	ENSCARG00000006122	ENSCARG00000006067	mdp1 (ENSCARG00000006043)	ENSCARG00000006033 #8	SOGA3 (ENSCARG00000006021)	elovl4b (ENSCARG00000006010)	tent5ab (ENSCARG00000006001)	ENSCARG00000005889	ENSCARG00000005861	gpsm2l (ENSCARG00000005743)	rnf146 (ENSCARG00000005708)
Goldfish	MODERN SPECIES	120																ENSCARG00000019879 #22	GMEB2 (ENSCARG00000019893)	pdyn (ENSCARG00000019940)
Cyprininae_a	ANCESTRAL SPECIES	302																ENSGT00390000003324.eb.a #22	ENSGT00410000025596.a.a.b	ENSGT00950000183149.B.c	ENSGT00940000158197.d.h	ENSGT00940000156473.e.c	ENSGT00390000017874.b.c	ENSGT00940000153185.a.a.b.e	ENSGT00940000163310.l.b	ENSGT00950000182835.d.a.k.b.b	ENSGT00940000155458.e.b.b	ENSGT00940000155308.c.bb	ENSGT00940000165533.d	ENSGT01050000244866.B.c.b.e	ENSGT01050000244806.b.a.a.a.a.b.a	ENSGT00940000163472.i.a.b.b.a.a.b.a.b	ENSGT01050000244806.b.a.a.a.a.a
Common carp reference	MODERN SPECIES	49	cbln4 (ENSCCRG00000081708)	ENSCCRG00000046638	ENSCCRG00000046214	ENSCCRG00000065784	ENSCCRG00000068686	ENSCCRG00000059481	ENSCCRG00000045530	ENSCCRG00000045504	ENSCCRG00000046211	gpx7 (ENSCCRG00000073338)	ENSCCRG00000045445	slc1a7b (ENSCCRG00000045436)	ENSCCRG00000045429	scp2b (ENSCCRG00000051430)	ENSCCRG00000051431	ENSCCRG00000038081 #22	ENSCCRG00000077512	pdyn (ENSCCRG00000038089)	ENSCCRG00000081496	ENSCCRG00000081433	stk35 (ENSCCRG00000065562)	scube3 (ENSCCRG00000044177)	ENSCCRG00000044161	pfkfb2a (ENSCCRG00000043523)	myl9a (ENSCCRG00000056616)	ENSCCRG00000030321	ENSCCRG00000018501	tgm2a (ENSCCRG00000018521)	ENSCCRG00000030441	ENSCCRG00000062982	ENSCCRG00000030484
Golden-line barbel	MODERN SPECIES	127	znf217 (ENSSGRG00000054587)	ENSSGRG00000054589	zgc:112994 (ENSSGRG00000054590)	ENSSGRG00000054592	cbln4 (ENSSGRG00000054596)	tgm1l4 (ENSSGRG00000054598)	cyp2aa12 (ENSSGRG00000054600)	ENSSGRG00000054616	ENSSGRG00000054639	ENSSGRG00000054641	gpx7 (ENSSGRG00000054643)	SHISAL2A (ENSSGRG00000054644)	slc1a7b (ENSSGRG00000054645)	PODN (ENSSGRG00000054648)	scp2b (ENSSGRG00000054649)	ENSSGRG00000054652 #22	GMEB2 (ENSSGRG00000054654)	pdyn (ENSSGRG00000054655)	stk35 (ENSSGRG00000054657)
Otophysi	ANCESTRAL SPECIES	235																ENSGT00390000003324.eb.b #22	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00940000156473.e	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155458.e.b	ENSGT00940000155308.c	ENSGT00940000165533.d	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a	ENSGT00390000009748	ENSGT00940000159381.c
Cyprinoidei	ANCESTRAL SPECIES	126						ENSGT00950000182879.a.a.d	ENSGT00950000182879.a.a.c	ENSGT00950000182879.b.o	ENSGT00950000182879.b.p	ENSGT00940000156988	ENSGT00940000159127	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b.a	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT00390000003324.eb.b #22	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00940000156473.e	ENSGT00940000163908	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b	ENSGT00940000163310.l	ENSGT00950000182835.d.a.k.b	ENSGT00940000155458.e.b	ENSGT00940000155308.c	ENSGT00940000165533.d	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a	ENSGT00390000009748
Cyprininae	ANCESTRAL SPECIES																	ENSGT00390000003324.eb.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00390000003324.eb.b #22
Golden-line barbel	MODERN SPECIES	1058													SHISAL2A (ENSSGRG00000014489)	slc1a7b (ENSSGRG00000014459)	PODN (ENSSGRG00000014451)	DAD1 (ENSSGRG00000014447) #22	GMEB2 (ENSSGRG00000014412)	pdyn (ENSSGRG00000014409)	ENSSGRG00000014408	ENSSGRG00000014407	ENSSGRG00000014405
Characiphysae	ANCESTRAL SPECIES	16	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT01030000234528.B.b.b.cb	ENSGT00950000183177.a.b.a	ENSGT00940000167983	ENSGT00940000162200.a.a	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00980000198596.B.a	ENSGT00390000004674.i.b	ENSGT00940000157607	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b	ENSGT00390000003324.eb.b #22	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00940000156473.e	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155458.e.b	ENSGT00940000155308.c	ENSGT00940000165533.d	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a	ENSGT00390000009748	ENSGT00940000159381.c
Characiphysae_b	ANCESTRAL SPECIES	180															ENSGT01050000244939.a.a.b.a.b	ENSGT00390000003324.eb.b #22	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00940000156473.e	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b	ENSGT00940000154967.a.a.a	ENSGT00950000182835.d.a.k.b	ENSGT00940000155458.e.b	ENSGT00940000155308.c	ENSGT00940000165533.d	ENSGT01050000244866.B.d	ENSGT01050000244866.B.c.b	ENSGT00950000183094.b.a	ENSGT00390000009748
Characoidei	ANCESTRAL SPECIES	8	ENSGT00940000160357	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT01030000234528.B.b.b.cb	ENSGT00950000183177.a.b.a	ENSGT00940000167983	ENSGT00940000162200.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00980000198596.B.a	ENSGT00390000004674.i.b	ENSGT00940000157607	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.b	ENSGT00390000003324.eb.b #22	ENSGT00410000025596.a.a	ENSGT00950000183149.B	ENSGT00940000158197.d	ENSGT00940000156473.e	ENSGT00390000017874.b	ENSGT00940000153185.a.a.b	ENSGT00940000161110.a.a	ENSGT00940000164219	ENSGT00950000182835.d.a.k.b	ENSGT00940000155458.e.b	ENSGT00940000155308.c
Red-bellied piranha	MODERN SPECIES	312							EPM2A (ENSPNAG00000020454)	fbxo30b (ENSPNAG00000020468)	ENSPNAG00000020487	ENSPNAG00000020513	FNDC7 (ENSPNAG00000020532)	stxbp3 (ENSPNAG00000020656)	rabggta (ENSPNAG00000020676)	tgm1l4 (ENSPNAG00000020719)	ABHD4 (ENSPNAG00000020747) #21	ENSPNAG00000020758 #22	GMEB2 (ENSPNAG00000020868)	pdyn (ENSPNAG00000020814)	stk35 (ENSPNAG00000020882)	ENSPNAG00000020900	ENSPNAG00000020915	scube3 (ENSPNAG00000020989)	ENSPNAG00000021002	pfkfb2a (ENSPNAG00000021051)	myl9a (ENSPNAG00000003666)	ENSPNAG00000021085
Otophysi	ANCESTRAL SPECIES	3	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT00940000161411	ENSGT00940000165396.B	ENSGT01100000263491.a.b.a.a.b.a	ENSGT01100000263491.a.b.a.b.a.b	ENSGT00940000157535.m.b	ENSGT00980000199858	ENSGT00390000014633	ENSGT01100000263538.A.a.a.b.a.d	ENSGT00950000182991.A.b.a	ENSGT00990000203615.b.a.a.a.a.g.a.a	ENSGT00940000162075.a.b	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.fb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d.c.a	ENSGT00950000182977.B.b.a.d.c.b	ENSGT00940000160141	ENSGT00390000004859.d	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a
Cyprinoidei	ANCESTRAL SPECIES	69	ENSGT00940000155702	ENSGT00940000161259.B.b	ENSGT00940000162569.b.k.b	ENSGT00940000155603.A.a.a.b	ENSGT00940000154630.a	ENSGT00940000159004.a	ENSGT00530000063615.a	ENSGT00940000154992.a.a	ENSGT01100000263681	ENSGT00940000156210.c	ENSGT00940000159301.c.b	ENSGT01030000235169	ENSGT01030000234918.a.a	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.fb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00950000182977.B.b.a.d.c.a.i	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d.c.a.j	ENSGT00950000182977.B.b.a.d.c.b.b	ENSGT00950000182977.B.b.a.d.c.b.a	ENSGT00940000160141	ENSGT00390000004859.d	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b
Cyprininae	ANCESTRAL SPECIES	142	ENSGT00940000162569.b.k.b.i	ENSGT01030000234519.e.a.a.b.a.a.b.a.b.a.b.f.b.a	ENSGT01030000234519.e.a.a.b.a.a.b.b.c.b	ENSGT00940000155885.b.c.b	ENSGT00940000155603.A.a.a.b.b	ENSGT00940000159004.a.a	ENSGT00530000063615.a.n	ENSGT00940000154992.a.a.b	ENSGT00940000156210.c.a	ENSGT00940000159301.c.b.b	ENSGT01030000235169.b	ENSGT01030000234918.b.a.b	ENSGT01030000234918.a.a.b	ENSGT01050000244939.a.a.b.a.a.a	ENSGT00390000016277.b.h #21	ENSGT00390000003324.fb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00950000182977.B.b.a.d.c.a.j.b	ENSGT00950000182977.B.b.a.d.c.b.b.b	ENSGT00950000182977.B.b.a.d.c.a.j.a.a.a.a	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d.c.a.j.a.a.b	ENSGT00950000182977.B.b.a.d.c.b.a.b	ENSGT00940000160141.c	ENSGT00390000004859.d.b	ENSGT00390000004859.c.h	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f.a.a	ENSGT00950000183014.f.b.b.a.b.b.a	ENSGT00940000167394	ENSGT00940000157362.c.b
Cyprininae_a	ANCESTRAL SPECIES	59	ENSGT00940000155885.b.c.a	ENSGT00940000155603.A.a.a.b.a	ENSGT00940000154630.a	ENSGT00940000159004.a.b	ENSGT00530000063615.a.m	ENSGT00940000154992.a.a.a	ENSGT01100000263681.a	ENSGT00940000156210.c.b	ENSGT00940000159301.c.b.a	ENSGT01030000235169.a	ENSGT01030000234918.b.a.a	ENSGT01030000234918.a.a.a.b	ENSGT01050000244939.a.a.b.a.a.b	ENSGT00390000016277.b.g #21	ENSGT00390000016277.b.h #21	ENSGT00390000003324.fb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00950000182977.B.b.a.d.c.a.j.b	ENSGT00950000182977.B.b.a.d.c.b.b.b	ENSGT00950000182977.B.b.a.d.c.a.j.a.a.a.a	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d.c.a.j.a.a.b	ENSGT00950000182977.B.b.a.d.c.b.a.b	ENSGT00940000160141.c	ENSGT00390000004859.d.b	ENSGT00390000004859.c.h	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f.a.a	ENSGT00950000183014.f.b.b.a.b.b.a	ENSGT00940000167394
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	637	chico (ENSSGRG00000023812)	tle2c (ENSSGRG00000023814)	PLPP2 (ENSSGRG00000023816)	shda (ENSSGRG00000023819)	yju2 (ENSSGRG00000023820)	scn12aa (ENSSGRG00000023823)	ENSSGRG00000024204	ACVR2B (ENSSGRG00000024220)	crygn1 (ENSSGRG00000024558)	ENSSGRG00000024559	ENSSGRG00000024561	ENSSGRG00000024562	ENSSGRG00000024563	ENSSGRG00000024564	abhd4 (ENSSGRG00000024565) #21	dad1 (ENSSGRG00000024566) #22	ENSSGRG00000024567	ENSSGRG00000024568	ENSSGRG00000024570	ENSSGRG00000024571	CACNA2D2 (ENSSGRG00000024577)
Golden-line barbel	MODERN SPECIES	279	chico (ENSSGRG00000050557)	tle2c (ENSSGRG00000050559)	PLPP2 (ENSSGRG00000050561)	shda (ENSSGRG00000050565)	yju2 (ENSSGRG00000050568)	scn12aa (ENSSGRG00000050576)	ENSSGRG00000050578	ACVR2B (ENSSGRG00000050595)	crygn1 (ENSSGRG00000050998)	ENSSGRG00000050999	ENSSGRG00000051000	ENSSGRG00000051001	ENSSGRG00000051002	ENSSGRG00000051004	abhd4 (ENSSGRG00000051008) #21	dad1 (ENSSGRG00000051009) #22	ENSSGRG00000051013	ENSSGRG00000051015	ENSSGRG00000051016	ENSSGRG00000051018	ENSSGRG00000051020	ENSSGRG00000051021	ENSSGRG00000051022	pigrl4.2 (ENSSGRG00000051023)	LRRC24 (ENSSGRG00000051024)	them6 (ENSSGRG00000051025)	si:ch73-52e5.2 (ENSSGRG00000051028)	ftr67 (ENSSGRG00000051029)	ENSSGRG00000051031	eef1da (ENSSGRG00000051035)	ghrhra (ENSSGRG00000051038)
Common carp reference	MODERN SPECIES	21	gna11b (ENSCCRG00000054256)	chico (ENSCCRG00000054548)	tle2c (ENSCCRG00000074518)	ENSCCRG00000022350	ENSCCRG00000076483	shda (ENSCCRG00000046378)	yju2 (ENSCCRG00000045648)	scn12aa (ENSCCRG00000033268)	ENSCCRG00000045182	crygn1 (ENSCCRG00000033245)	ENSCCRG00000063979	ENSCCRG00000033243	ENSCCRG00000056657	ENSCCRG00000012598	abhd4 (ENSCCRG00000029455) #21	dad1 (ENSCCRG00000014002) #22	ENSCCRG00000018948	ENSCCRG00000020678	pigrl4.2 (ENSCCRG00000079839)	ENSCCRG00000001937	si:ch73-52e5.2 (ENSCCRG00000001918)	ftr67 (ENSCCRG00000069833)	ENSCCRG00000001880	eef1da (ENSCCRG00000067454)	adcyap1r1a (ENSCCRG00000044459)	ENSCCRG00000032439	ENSCCRG00000020365	ENSCCRG00000020364	ENSCCRG00000060514	neurod6b (ENSCCRG00000068095)	ENSCCRG00000020351
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2251															abhd4 (ENSCARG00000036591) #21	dad1 (ENSCARG00000036610) #22	ENSCARG00000036656	ENSCARG00000036738	ENSCARG00000036749	ENSCARG00000036758
Goldfish	MODERN SPECIES	928	tle2c (ENSCARG00000056862)	PLPP2 (ENSCARG00000056916)	ENSCARG00000056944	shda (ENSCARG00000056972)	yju2 (ENSCARG00000056991)	scn12aa (ENSCARG00000057260)	ENSCARG00000063663	ACVR2B (ENSCARG00000063686)	crygn1 (ENSCARG00000063826)	ENSCARG00000063861	ENSCARG00000063866	ENSCARG00000063877	TGM1 (ENSCARG00000063892)	TGM1 (ENSCARG00000063923)	abhd4 (ENSCARG00000063967) #21	dad1 (ENSCARG00000063973) #22	ENSCARG00000063983	ENSCARG00000063998
Goldfish	MODERN SPECIES	11	chico (ENSCARG00000017262)	ENSCARG00000017281	tle2c (ENSCARG00000017289)	PLPP2 (ENSCARG00000017329)	ENSCARG00000017350	ENSCARG00000017370	shda (ENSCARG00000017377)	yju2 (ENSCARG00000017388)	ACVR2B (ENSCARG00000017427)	crygn1 (ENSCARG00000017657)	ENSCARG00000017684	ENSCARG00000017694	ENSCARG00000017703	TGM1 (ENSCARG00000017723)	abhd4 (ENSCARG00000017849) #21	dad1 (ENSCARG00000017887) #22	ENSCARG00000017901	ENSCARG00000017912	ENSCARG00000017928	ENSCARG00000017963	ENSCARG00000017973	ENSCARG00000017979	ENSCARG00000017988	ENSCARG00000018000	ENSCARG00000018018	pigrl4.2 (ENSCARG00000018029)	LRRC24 (ENSCARG00000018052)	them6 (ENSCARG00000018060)	si:ch73-52e5.2 (ENSCARG00000018069)	ftr67 (ENSCARG00000018080)	ENSCARG00000018088
Zebrafish	MODERN SPECIES	11	chico (ENSDARG00000019588)	tle2c (ENSDARG00000067832)	PLPP2 (ENSDARG00000002231)	theg (ENSDARG00000078644)	shda (ENSDARG00000094243)	yju2 (ENSDARG00000026185)	scn12aa (ENSDARG00000090724)	ACVR2B (ENSDARG00000103108)	ENSDARG00000116628	crygn1 (ENSDARG00000102129)	ENSDARG00000100184	ENSDARG00000101479	ENSDARG00000099839	ENSDARG00000102106	abhd4 (ENSDARG00000102887) #21	dad1 (ENSDARG00000102105) #22	ENSDARG00000101890	ENSDARG00000098437	ENSDARG00000098965	ENSDARG00000101802	pigrl2.3 (ENSDARG00000116660)	ENSDARG00000113188	pigrl2.4 (ENSDARG00000099599)	ENSDARG00000104962	ENSDARG00000103575	ENSDARG00000100258	ENSDARG00000101129	ENSDARG00000103964	ENSDARG00000098106	pigrl3.5 (ENSDARG00000099938)	ENSDARG00000098216
Characiphysae	ANCESTRAL SPECIES	34	ENSGT00940000161411	ENSGT00940000165396.B	ENSGT01100000263491.a.b.a.a.b.a	ENSGT01100000263491.a.b.a.b.a.b	ENSGT00940000157535.m.b	ENSGT00980000199858	ENSGT00390000014633	ENSGT01100000263556.a.a.q.c.a	ENSGT01100000263538.A.a.a.b.a.d	ENSGT00950000182991.A.b.a	ENSGT00990000203615.b.a.a.a.a.g.a.a	ENSGT00940000162075.a.b	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.fb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d.c.a	ENSGT00950000182977.B.b.a.d.c.b	ENSGT00940000160141	ENSGT00390000004859.d	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a
Channel catfish	MODERN SPECIES	6	ENSIPUG00000001374	ENSIPUG00000001446	epm2a (ENSIPUG00000001457)	fbxo30b (ENSIPUG00000001481)	ENSIPUG00000001488	ENSIPUG00000001495	ENSIPUG00000001507	ENSIPUG00000001525	stxbp3 (ENSIPUG00000001546)	rabggta (ENSIPUG00000001558)	ENSIPUG00000001568	TGM1 (ENSIPUG00000001631)	ENSIPUG00000001642	ENSIPUG00000001658	ABHD4 (ENSIPUG00000001686) #21	dad1 (ENSIPUG00000001694) #22	gmeb2 (ENSIPUG00000001712)	pdyn (ENSIPUG00000001727)	stk35 (ENSIPUG00000001743)	ENSIPUG00000001753	ENSIPUG00000001772	ENSIPUG00000001776	scube3 (ENSIPUG00000001791)	ENSIPUG00000001863	pfkfb2a (ENSIPUG00000001878)	myl9a (ENSIPUG00000001903)	DLGAP4 (ENSIPUG00000001915)	ENSIPUG00000001928	tgm2a (ENSIPUG00000001947)	Rprd1b (ENSIPUG00000001989)	tti1 (ENSIPUG00000002013)
Characiphysae_b	ANCESTRAL SPECIES	57	ENSGT00390000012355.A.b	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT00940000165396.B	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000157535.m.b	ENSGT00980000199858	ENSGT00390000014633	ENSGT01100000263556.a.a.q.c.a	ENSGT01100000263538.A.a.a.b.a.d	ENSGT00950000182991.A.b.a	ENSGT00990000203615.b.a.a.a.a.g.a.a	ENSGT00940000162075.a.b	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.fb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d.c.a	ENSGT00950000182977.B.b.a.d.c.b
Characoidei	ANCESTRAL SPECIES	45	ENSGT00390000012355.A.b	ENSGT01100000263495.A.a.b.b.a.a.a.b	ENSGT00940000165396.B	ENSGT01100000263491.a.b.a.a.b.a	ENSGT00940000157535.m.b	ENSGT00980000199858	ENSGT00390000014633	ENSGT01100000263556.a.a.q.c.a	ENSGT01100000263538.A.a.a.b.a.d	ENSGT00950000182991.A.b.a	ENSGT00990000203615.b.a.a.a.a.g.a.a	ENSGT00940000162075.a.b	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324.fb #22	ENSGT00950000182977.B.b.a.c.b	ENSGT00980000199825	ENSGT00950000182977.B.b.a.d.c.a	ENSGT00950000182977.B.b.a.d.c.b
Red-bellied piranha	MODERN SPECIES	48	ENSPNAG00000027768	ENSPNAG00000027788	si:ch211-155e24.3 (ENSPNAG00000004259)	ENSPNAG00000006215	fcer1gl (ENSPNAG00000027840)	NCSTN (ENSPNAG00000027859)	ENSPNAG00000027916	ENSPNAG00000006154	ENSPNAG00000027942	pnp5b (ENSPNAG00000027947)	KCNJ10 (ENSPNAG00000004298)	foxl2b (ENSPNAG00000028070)	ENSPNAG00000028084	TGM1 (ENSPNAG00000028129)	abhd4 (ENSPNAG00000028146) #21	dad1 (ENSPNAG00000028161) #22	ENSPNAG00000006158	ENSPNAG00000028193	ENSPNAG00000028217	ENSPNAG00000028235	ENSPNAG00000028249	ENSPNAG00000006074	ENSPNAG00000028277	ENSPNAG00000028301	ENSPNAG00000005682	ENSPNAG00000028341	ENSPNAG00000006561	ENSPNAG00000028366	ENSPNAG00000028446	ENSPNAG00000005046	ENSPNAG00000028493
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	8	ENSAMXG00000039910	ENSAMXG00000042743	fcer1gl (ENSAMXG00000032245)	NCSTN (ENSAMXG00000037882)	ENSAMXG00000030697	ENSAMXG00000013492	ENSAMXG00000041969	ENSAMXG00000031676	pnp5b (ENSAMXG00000035060)	ENSAMXG00000038330	KCNJ10 (ENSAMXG00000018055)	foxl2b (ENSAMXG00000018076)	ENSAMXG00000043022	TGM1 (ENSAMXG00000033868)	abhd4 (ENSAMXG00000040865) #21	dad1 (ENSAMXG00000041545) #22	ENSAMXG00000034304	ENSAMXG00000037234	ENSAMXG00000014005	ENSAMXG00000039322	ENSAMXG00000044095	ENSAMXG00000033632	LPL (ENSAMXG00000002796)	TPM4 (ENSAMXG00000032280)	RAB8A (ENSAMXG00000002853)	CIB3 (ENSAMXG00000038031)	SUGP1 (ENSAMXG00000002872)	MAU2 (ENSAMXG00000002971)	GATAD2A (ENSAMXG00000035421)	NDUFA13 (ENSAMXG00000038688)	YJEFN3 (ENSAMXG00000035910)
Mexicana tetra	MODERN SPECIES	6	ENSAMXG00000037636	CELA3A (ENSAMXG00000037630)	slc34a2b (ENSAMXG00000036607)	ENSAMXG00000000917	psmb11b (ENSAMXG00000041727)	UTRN (ENSAMXG00000000945)	ENSAMXG00000040043	EPM2A (ENSAMXG00000041652)	fbxo30b (ENSAMXG00000033229)	ENSAMXG00000037852	ENSAMXG00000000979	ENSAMXG00000030592	stxbp3 (ENSAMXG00000000986)	rabggta (ENSAMXG00000000987)	tgm1l4 (ENSAMXG00000000991)	DAD1 (ENSAMXG00000036732) #22	GMEB2 (ENSAMXG00000001001)	pdyn (ENSAMXG00000039841)	stk35 (ENSAMXG00000035676)	ENSAMXG00000040243	ENSAMXG00000033667	scube3 (ENSAMXG00000001024)	ENSAMXG00000001044	pfkfb2a (ENSAMXG00000001046)	myl9a (ENSAMXG00000041368)	ENSAMXG00000029392	DLGAP4 (ENSAMXG00000001057)	ENSAMXG00000017525	PDZRN3 (ENSAMXG00000030758)	ppp4r2a (ENSAMXG00000037385)	rybpa (ENSAMXG00000043350)
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	987										pnp5b (ENSEEEG00000020428)	KCNJ10 (ENSEEEG00000020434)	foxl2b (ENSEEEG00000020447)	ENSEEEG00000020448	TGM1 (ENSEEEG00000020454)	abhd4 (ENSEEEG00000020641) #21	dad1 (ENSEEEG00000020643) #22	ENSEEEG00000020648	ENSEEEG00000020650	ENSEEEG00000020651	epc1b (ENSEEEG00000020658)
Electric eel	MODERN SPECIES	298														tgm1l4 (ENSEEEG00000012129)	ABHD4 (ENSEEEG00000012125) #21	DAD1 (ENSEEEG00000012124) #22	GMEB2 (ENSEEEG00000012121)	pdyn (ENSEEEG00000012117)	stk35 (ENSEEEG00000012115)	ENSEEEG00000012114	ENSEEEG00000012113	scube3 (ENSEEEG00000012112)	ENSEEEG00000012109	pfkfb2a (ENSEEEG00000011660)	myl9a (ENSEEEG00000011650)	ENSEEEG00000011649	ENSEEEG00000011647	TGM2 (ENSEEEG00000011645)	tgm2a (ENSEEEG00000011592)	rprd1b (ENSEEEG00000011582)	TTI1 (ENSEEEG00000011579)
Clupeiformes	ANCESTRAL SPECIES	641														ENSGT01050000244939.a.a.b.a.a	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b
Denticle herring	MODERN SPECIES	14	ENSDCDG00000000643	mterf4 (ENSDCDG00000000646)	ENSDCDG00000000651	ENSDCDG00000000655	ENSDCDG00000000666	mbnl1 (ENSDCDG00000000684)	CUL3 (ENSDCDG00000000718)	ENSDCDG00000000817	mbnl1 (ENSDCDG00000000957)	CUL3 (ENSDCDG00000001093)	ap1s3b (ENSDCDG00000001102)	scg2b (ENSDCDG00000001109)	acsl3b (ENSDCDG00000001165)	TGM1 (ENSDCDG00000001492)	abhd4 (ENSDCDG00000001702) #21	dad1 (ENSDCDG00000001703) #22	ENSDCDG00000001705	ENSDCDG00000001708	ENSDCDG00000001710	parp2 (ENSDCDG00000001719)	ENSDCDG00000001735	zgc:66427 (ENSDCDG00000001736)	TTC39C (ENSDCDG00000001743)	ENSDCDG00000001811	MMP16 (ENSDCDG00000001837)	egfra (ENSDCDG00000002222)	npc1 (ENSDCDG00000005065)	cables1 (ENSDCDG00000011665)	gata6 (ENSDCDG00000011720)	mib1 (ENSDCDG00000011729)	abhd3 (ENSDCDG00000012466)
Atlantic herring	MODERN SPECIES	1	fam102bb (ENSCHAG00000020199)	ENSCHAG00000020217	henmt1 (ENSCHAG00000020231)	ENSCHAG00000020237	ENSCHAG00000020245	ENSCHAG00000020274	ENSCHAG00000020293	ENSCHAG00000020330	ENSCHAG00000020355	ENSCHAG00000020364	FNDC7 (ENSCHAG00000020405)	stxbp3 (ENSCHAG00000020511)	ENSCHAG00000020702	ENSCHAG00000020763	ABHD4 (ENSCHAG00000020777) #21	dad1 (ENSCHAG00000020790) #22	ENSCHAG00000020805	lingo3a (ENSCHAG00000002340)	org (ENSCHAG00000002353)	oaz1a (ENSCHAG00000002416)	amh (ENSCHAG00000002616)	DOT1L (ENSCHAG00000002671)	ENSCHAG00000003026	ell (ENSCHAG00000003040)	fkbp8 (ENSCHAG00000003120)	ssbp4 (ENSCHAG00000003297)	tmem59l (ENSCHAG00000003406)	crlf1b (ENSCHAG00000003479)	rex1bd (ENSCHAG00000004305)	ENSCHAG00000004354	SAC3D1 (ENSCHAG00000004400)
Osteoglossiformes	ANCESTRAL SPECIES	112	ENSGT00950000182838.B.a.b	ENSGT00940000158278.e.b.b	ENSGT00390000001141 #13	ENSGT01030000234576.D.a.b.a.b.a.b.b	ENSGT00940000160062.a #15	ENSGT00940000166379.e	ENSGT00940000157990.a.a	ENSGT00940000159567.a.a.a #8	ENSGT00940000157841 #9	ENSGT00940000162200.a.b	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a.e	ENSGT00550000075121	ENSGT01050000244939.a.a.b.a.a.f	ENSGT00390000016277.b #21	ENSGT00390000003324 #22	ENSGT00950000182977.B.b.a.c.b
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	320	ENSPKIG00000015218	ENSPKIG00000015181	ENSPKIG00000015163	ENSPKIG00000015084	nrl (ENSPKIG00000015038)	REM2 (ENSPKIG00000015007) #15	ENSPKIG00000014976	ENSPKIG00000014945	ENSPKIG00000014919	ENSPKIG00000014904	ENSPKIG00000014897	ENSPKIG00000014886	rabggta (ENSPKIG00000014831)	TGM1 (ENSPKIG00000014781)	ABHD4 (ENSPKIG00000014749) #21	dad1 (ENSPKIG00000014730) #22	ENSPKIG00000014714	ENSPKIG00000014702	ENSPKIG00000014685	ENSPKIG00000014670	ENSPKIG00000014652
P. kingsleyae	MODERN SPECIES	153	ENSPKIG00000017061	ENSPKIG00000017049	tmub1 (ENSPKIG00000017038)	asap1a (ENSPKIG00000016864)	CYRIB (ENSPKIG00000016643)	MYC (ENSPKIG00000016592)	ANKH (ENSPKIG00000016573)	otulinb (ENSPKIG00000016530)	POU6F2 (ENSPKIG00000016483)	amph (ENSPKIG00000016319)	ENSPKIG00000016261	stard3nl (ENSPKIG00000016225)	epdr1 (ENSPKIG00000016214)	SFRP4 (ENSPKIG00000016192)	abhd4 (ENSPKIG00000016153) #21	dad1 (ENSPKIG00000016114) #22	ENSPKIG00000016082	ENSPKIG00000016014	ATP6V0D2 (ENSPKIG00000015966)	snx16 (ENSPKIG00000015948)	ENSPKIG00000015926	LRRCC1 (ENSPKIG00000015894)	ENSPKIG00000015866	e2f5 (ENSPKIG00000015859)	cahz (ENSPKIG00000015841)	ENSPKIG00000015830	CDH18 (ENSPKIG00000015784)	cdh12a (ENSPKIG00000015722)	cdh10a (ENSPKIG00000015692)	CDH6 (ENSPKIG00000015652)	zgc:56556 (ENSPKIG00000015632)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES		zp3f.2 (ENSSFOG00015011065)	NEDD8 (ENSSFOG00015024301)	ap1g2 (ENSSFOG00015010986)	SLC7A8 (ENSSFOG00015010924)	prmt5 (ENSSFOG00015010853) #13	ENSSFOG00015010829	rem2 (ENSSFOG00015010817) #15	nrl (ENSSFOG00015010790)	carmil3 (ENSSFOG00015010629)	CDH24 (ENSSFOG00015010587) #8	psmb5 (ENSSFOG00015028916) #9	PSMB11 (ENSSFOG00015010531)	ENSSFOG00015010515	TGM1 (ENSSFOG00015010427)	abhd4 (ENSSFOG00015010415) #21	dad1 (ENSSFOG00015010401) #22	ENSSFOG00015010392	BCL11B (ENSSFOG00015033112)	CCNK (ENSSFOG00015002912)	ccdc85ca (ENSSFOG00015026682)	HHIPL1 (ENSSFOG00015002985)	ENSSFOG00015032361	CYP46A1 (ENSSFOG00015032565)	ENSSFOG00015030924	ENSSFOG00015031610	ism2b (ENSSFOG00015022159)	sptlc2b (ENSSFOG00015022175)	alkbh1 (ENSSFOG00015022204)	snw1 (ENSSFOG00015022216)	nrxn3a (ENSSFOG00015022245)	CEP128 (ENSSFOG00015022267)
Asian bonytongue	MODERN SPECIES	24	nrl (ENSSFOG00015028848)	REM2 (ENSSFOG00015021830) #15	ENSSFOG00015031052	ENSSFOG00015021865	ENSSFOG00015026144	ENSSFOG00015032180	ENSSFOG00015027087	ENSSFOG00015021920	ENSSFOG00015013439	ENSSFOG00015013454	ENSSFOG00015027663	rabggta (ENSSFOG00015013495)	ENSSFOG00015013577	TGM1 (ENSSFOG00015013615)	ABHD4 (ENSSFOG00015013663) #21	DAD1 (ENSSFOG00015013678) #22	ENSSFOG00015013702	ENSSFOG00015028919	ENSSFOG00015020286	ENSSFOG00015029110	ENSSFOG00015032630	ENSSFOG00015028019	ENSSFOG00015013767	ENSSFOG00015030183	ENSSFOG00015006945	ENSSFOG00015013888	LRRC24 (ENSSFOG00015013903)	ENSSFOG00015031441	ENSSFOG00015013969	ENSSFOG00015006922	ENSSFOG00015013935
Spotted gar	MODERN SPECIES	450															ENSLOCG00000000168	dad1 (ENSLOCG00000017661) #22
Reedfish	MODERN SPECIES	10	ENSECRG00000011152	ENSECRG00000011148	ENSECRG00000011141	ENSECRG00000009074	ENSECRG00000008368	ENSECRG00000001602	pabpn1 (ENSECRG00000000559)	ngdn (ENSECRG00000000541)	ENSECRG00000000513	ENSECRG00000000491	ENSECRG00000000479	ENSECRG00000000464	ENSECRG00000000445	ENSECRG00000000432	abhd4 (ENSECRG00000000420) #21	dad1 (ENSECRG00000000408) #22	tgm1l4 (ENSECRG00000005003)	rabggta (ENSECRG00000004982)	ENSECRG00000004964	ENSECRG00000004953	ENSECRG00000004931 #16	mmp14a (ENSECRG00000004914) #17	mrpl52 (ENSECRG00000004906) #18	AJUBA (ENSECRG00000004870) #11	ENSECRG00000004833 #7	ENSECRG00000004822 #7	si:ch211-14a17.11 (ENSECRG00000004809)	ENSECRG00000004800	ENSECRG00000004789	mettl3 (ENSECRG00000004772)	mettl3 (ENSECRG00000004761)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1628	ENSCMIG00000005909	ankef1a (ENSCMIG00000005916)	ENSCMIG00000005923	snap25b (ENSCMIG00000005925)	mkks (ENSCMIG00000005928)	ENSCMIG00000005933	ENSCMIG00000005935	ENSCMIG00000005942	JAG1 (ENSCMIG00000005970)	ENSCMIG00000006077	cog2 (ENSCMIG00000006083)	ENSCMIG00000006089	bmp2a (ENSCMIG00000006102)	gdf3 (ENSCMIG00000006154)	ENSCMIG00000006158 #22	dad1 (ENSCMIG00000006164) #22	ENSCMIG00000006174	ENSCMIG00000006205	ENSCMIG00000006226	SCAF8 (ENSCMIG00000006235)	TIAM2 (ENSCMIG00000006249)	tfb1m (ENSCMIG00000006254)	CLDN20 (ENSCMIG00000006264)	NOX3 (ENSCMIG00000006278)	ENSCMIG00000006318	arid1b (ENSCMIG00000006379)	tmem242 (ENSCMIG00000006511)
Elephant shark	MODERN SPECIES	1628				tmem242 (ENSCMIG00000006511)	arid1b (ENSCMIG00000006379)	ENSCMIG00000006318	NOX3 (ENSCMIG00000006278)	CLDN20 (ENSCMIG00000006264)	tfb1m (ENSCMIG00000006254)	TIAM2 (ENSCMIG00000006249)	SCAF8 (ENSCMIG00000006235)	ENSCMIG00000006226	ENSCMIG00000006205	ENSCMIG00000006174	dad1 (ENSCMIG00000006164) #22	ENSCMIG00000006158 #22	gdf3 (ENSCMIG00000006154)	bmp2a (ENSCMIG00000006102)	ENSCMIG00000006089	cog2 (ENSCMIG00000006083)	ENSCMIG00000006077	JAG1 (ENSCMIG00000005970)	ENSCMIG00000005942	ENSCMIG00000005935	ENSCMIG00000005933	mkks (ENSCMIG00000005928)	snap25b (ENSCMIG00000005925)	ENSCMIG00000005923	ankef1a (ENSCMIG00000005916)	ENSCMIG00000005909	PAK5 (ENSCMIG00000005904)