Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00940000159463 #7	ENSGT00950000182844.b.b.a #8	ENSGT00570000079224.z.a #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656 #15	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #28	ENSGT00530000064067 #29	ENSGT00390000015248 #30	ENSGT00940000156698 #31	ENSGT00900000141033.b.b #32	ENSGT00900000141074 #33	ENSGT00390000008859.b.c #34	ENSGT00940000162023 #35	ENSGT00940000154947 #36	ENSGT00940000160917 #37
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00940000159463 #7	ENSGT00950000182844.b.b.a #8	ENSGT00570000079224.y ##9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656 #15	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #28	ENSGT00530000064067 #29	ENSGT00390000015248 #30	ENSGT00940000156698 #31	ENSGT00900000141033.b.b #32	ENSGT00900000141074 #33	ENSGT00390000008859.b.c #34	ENSGT00940000162023 #35	ENSGT00940000154947 #36	ENSGT00940000160917 #37
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00940000159463 #7	ENSGT00950000182844.b.b.a #8	ENSGT00570000079224.z.a #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656 #15	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #28	ENSGT00530000064067 #29	ENSGT00390000015248 #30	ENSGT00940000156698 #31	ENSGT00900000141033.b.b #32	ENSGT00900000141074 #33	ENSGT00390000008859.b.c #34	ENSGT00940000162023 #35	ENSGT00940000154947 #36	ENSGT00940000160917 #37
Long-tailed chinchilla	MODERN SPECIES	252	MEF2D (ENSCLAG00000004702) #7	RHBG (ENSCLAG00000004625) #8	ENSCLAG00000004359 #9	GLMP (ENSCLAG00000004192) #10	TMEM79 (ENSCLAG00000004142) #11	SMG5 (ENSCLAG00000003983) #12	PAQR6 (ENSCLAG00000003899) #13	BGLAP (ENSCLAG00000003710) #14	PMF1 (ENSCLAG00000003672) #15	SLC25A44 (ENSCLAG00000005587) #16	SEMA4A (ENSCLAG00000005297) #17	LMNA (ENSCLAG00000003894) #18	MEX3A (ENSCLAG00000003842) #19	RAB25 (ENSCLAG00000003784) #20	LAMTOR2 (ENSCLAG00000003700) #21	UBQLN4 (ENSCLAG00000003519) #22	SSR2 (ENSCLAG00000003363) #23	ARHGEF2 (ENSCLAG00000013596) #24	KHDC4 (ENSCLAG00000010544) #25	RIT1 (ENSCLAG00000013305) #26	SYT11 (ENSCLAG00000013172) #27	ENSCLAG00000006556 #28	MSTO1 (ENSCLAG00000006273) #29	DAP3 (ENSCLAG00000005599) #30	ASH1L (ENSCLAG00000004536) #31	RUSC1 (ENSCLAG00000005579) #32	FDPS (ENSCLAG00000005410) #33	PKLR (ENSCLAG00000005136) #34	HCN3 (ENSCLAG00000005021) #35	CLK2 (ENSCLAG00000003873) #36	SCAMP3 (ENSCLAG00000003649) #37
Degu	MODERN SPECIES	73	MEF2D (ENSODEG00000010190) #7	RHBG (ENSODEG00000009136) #8	ENSODEG00000009974 ##9	GLMP (ENSODEG00000009800) #10	TMEM79 (ENSODEG00000012508) #11	SMG5 (ENSODEG00000012237) #12	PAQR6 (ENSODEG00000010747) #13	BGLAP (ENSODEG00000010926) #14	PMF1 (ENSODEG00000011902) #15	SLC25A44 (ENSODEG00000009774) #16	SEMA4A (ENSODEG00000009359) #17	LMNA (ENSODEG00000009369) #18	MEX3A (ENSODEG00000009643) #19	RAB25 (ENSODEG00000009908) #20	LAMTOR2 (ENSODEG00000010141) #21	UBQLN4 (ENSODEG00000010901) #22	SSR2 (ENSODEG00000010659) #23	ARHGEF2 (ENSODEG00000011373) #24	ENSODEG00000019992	ENSODEG00000009528 #25	RIT1 (ENSODEG00000010128) #26	SYT11 (ENSODEG00000010870) #27	ENSODEG00000011008 #28	ENSODEG00000010737	MSTO1 (ENSODEG00000011191) #29	DAP3 (ENSODEG00000010674) #30	ASH1L (ENSODEG00000009920) #31	ENSODEG00000010812 #32	FDPS (ENSODEG00000010515) #33	PKLR (ENSODEG00000011272) #34	HCN3 (ENSODEG00000009743) #35
Guinea pig	MODERN SPECIES	10	MEF2D (ENSCPOG00000036656) #7	RHBG (ENSCPOG00000011135) #8	CCT3 (ENSCPOG00000009131) ##9	GLMP (ENSCPOG00000032634) #10	TMEM79 (ENSCPOG00000033881) #11	SMG5 (ENSCPOG00000015696) #12	PAQR6 (ENSCPOG00000019726) #13	BGLAP (ENSCPOG00000040505) #14	PMF1 (ENSCPOG00000015695) #15	SLC25A44 (ENSCPOG00000021129) #16	SEMA4A (ENSCPOG00000015694) #17	LMNA (ENSCPOG00000023214) #18	MEX3A (ENSCPOG00000020219) #19	RAB25 (ENSCPOG00000002472) #20	LAMTOR2 (ENSCPOG00000032238) #21	UBQLN4 (ENSCPOG00000002467) #22	SSR2 (ENSCPOG00000023729) #23	ARHGEF2 (ENSCPOG00000025396) #24	ENSCPOG00000032356	KHDC4 (ENSCPOG00000004870) #25	RIT1 (ENSCPOG00000004868) #26	SYT11 (ENSCPOG00000004866) #27	ENSCPOG00000004859 #28	MSTO1 (ENSCPOG00000004857) #29	DAP3 (ENSCPOG00000030924) #30	ASH1L (ENSCPOG00000004801) #31	RUSC1 (ENSCPOG00000032934) #32	FDPS (ENSCPOG00000015363) #33	PKLR (ENSCPOG00000011202) #34	HCN3 (ENSCPOG00000027026) #35	CLK2 (ENSCPOG00000003176) #36
Naked mole-rat female	MODERN SPECIES	10	IQGAP3 (ENSHGLG00000018362)	MEF2D (ENSHGLG00000019055) #7	RHBG (ENSHGLG00000005998) #8	ENSHGLG00000003153 #9	GLMP (ENSHGLG00000041332) #10	TMEM79 (ENSHGLG00000018185) #11	SMG5 (ENSHGLG00000019152) #12	PAQR6 (ENSHGLG00000015640) #13	ENSHGLG00000007944 #14	SLC25A44 (ENSHGLG00000042222) #16	SEMA4A (ENSHGLG00000003587) #17	ENSHGLG00000036594 #18	MEX3A (ENSHGLG00000041429) #19	RAB25 (ENSHGLG00000005517) #20	LAMTOR2 (ENSHGLG00000036352) #21	UBQLN4 (ENSHGLG00000003684) #22	SSR2 (ENSHGLG00000035940) #23	RXFP4 (ENSHGLG00000037004)	KHDC4 (ENSHGLG00000010495) #25	ENSHGLG00000034706 #26	SYT11 (ENSHGLG00000032288) #27	ENSHGLG00000006556 #28	MSTO1 (ENSHGLG00000018369) #29	DAP3 (ENSHGLG00000013978) #30	ASH1L (ENSHGLG00000008090) #31	ENSHGLG00000049863	ENSHGLG00000006300 #32	ENSHGLG00000005618 #33