Euarchontoglires	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Primates	ANCESTRAL SPECIES	7	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074.e.b	ENSGT00390000012642	ENSGT00900000141074.f
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074.e.b.b.b	ENSGT00390000012642	ENSGT00900000141074.e.b.b.a.a.a
Mas night monkey	MODERN SPECIES	1180	TSACC (ENSANAG00000036292) #7	CCT3 (ENSANAG00000036513) #8	ENSANAG00000026737 #9	GLMP (ENSANAG00000020224) #10	TMEM79 (ENSANAG00000028444) #11	SMG5 (ENSANAG00000032899) #12	PAQR6 (ENSANAG00000023514) #13	BGLAP (ENSANAG00000034859) #14	ENSANAG00000028929 #15	SLC25A44 (ENSANAG00000033058) #16	SEMA4A (ENSANAG00000032935) #17	LMNA (ENSANAG00000028703) #18	MEX3A (ENSANAG00000032597) #19	RAB25 (ENSANAG00000036045) #20	LAMTOR2 (ENSANAG00000036124) #21	UBQLN4 (ENSANAG00000031889) #22	SSR2 (ENSANAG00000024178) #23	ARHGEF2 (ENSANAG00000038394) #24	ENSANAG00000034289 #25	RIT1 (ENSANAG00000033671) #26	SYT11 (ENSANAG00000020380) #27	ENSANAG00000006710 #28	GON4L (ENSANAG00000036572) #29	ENSANAG00000026598 #30	ENSANAG00000035773 #31	DAP3 (ENSANAG00000033995) #32	YY1AP1 (ENSANAG00000022356) #33	ENSANAG00000024232 #34	ENSANAG00000028010 #35	ASH1L (ENSANAG00000019337) #36	RUSC1 (ENSANAG00000027974) #37
Cebidae	ANCESTRAL SPECIES	12	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074.e.b.b.b	ENSGT00390000012642	ENSGT00900000141074.e.b.b.a.a.a
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.e.b.b.a.a.a	ENSGT00390000008859.b.c
Capuchin	MODERN SPECIES	427	TSACC (ENSCCAG00000022149) #7	CCT3 (ENSCCAG00000033998) #8	ENSCCAG00000011652 #9	GLMP (ENSCCAG00000034620) #10	TMEM79 (ENSCCAG00000028389) #11	SMG5 (ENSCCAG00000027409) #12	PAQR6 (ENSCCAG00000027826) #13	BGLAP (ENSCCAG00000020525) #14	PMF1 (ENSCCAG00000025850)	SLC25A44 (ENSCCAG00000026588) #16	SEMA4A (ENSCCAG00000032806) #17	LMNA (ENSCCAG00000023432) #18	MEX3A (ENSCCAG00000022351) #19	RAB25 (ENSCCAG00000021873) #20	LAMTOR2 (ENSCCAG00000026308) #21	UBQLN4 (ENSCCAG00000036689) #22	ENSCCAG00000029510	SSR2 (ENSCCAG00000037436) #23	ARHGEF2 (ENSCCAG00000029636) #24	KHDC4 (ENSCCAG00000023017) #25	RIT1 (ENSCCAG00000037656) #26	SYT11 (ENSCCAG00000016634) #27	GON4L (ENSCCAG00000037108) #29	MSTO1 (ENSCCAG00000035498) #35	DAP3 (ENSCCAG00000033532) #32	YY1AP1 (ENSCCAG00000026983) #33
Bolivian squirrel monkey	MODERN SPECIES	136	RHBG (ENSSBOG00000035568)	TSACC (ENSSBOG00000020015) #7	CCT3 (ENSSBOG00000035044) #8	GLMP (ENSSBOG00000020411) #10	TMEM79 (ENSSBOG00000021483) #11	SMG5 (ENSSBOG00000033339) #12	PAQR6 (ENSSBOG00000036021) #13	BGLAP (ENSSBOG00000026047) #14	PMF1 (ENSSBOG00000034025)	SLC25A44 (ENSSBOG00000020325) #16	SEMA4A (ENSSBOG00000019443) #17	LMNA (ENSSBOG00000014857) #18	MEX3A (ENSSBOG00000025317) #19	RAB25 (ENSSBOG00000032212) #20	LAMTOR2 (ENSSBOG00000035732) #21	UBQLN4 (ENSSBOG00000021728) #22	SSR2 (ENSSBOG00000020706) #23	ARHGEF2 (ENSSBOG00000034006) #24	RXFP4 (ENSSBOG00000034710)	KHDC4 (ENSSBOG00000034469) #25	RIT1 (ENSSBOG00000023350) #26	SYT11 (ENSSBOG00000035584) #27	GON4L (ENSSBOG00000032520) #29	MSTO1 (ENSSBOG00000023864) #35	DAP3 (ENSSBOG00000033972) #32	YY1AP1 (ENSSBOG00000029484) #33	ASH1L (ENSSBOG00000026764) #36	RUSC1 (ENSSBOG00000020883) #37	ENSSBOG00000036252	ENSSBOG00000020002	PKLR (ENSSBOG00000030303)
Marmoset	MODERN SPECIES	9	RHBG (ENSCJAG00000005838)	TSACC (ENSCJAG00000005831) #7	ENSCJAG00000005776 #8	GLMP (ENSCJAG00000005757) #10	TMEM79 (ENSCJAG00000005765) #11	SMG5 (ENSCJAG00000005684) #12	PAQR6 (ENSCJAG00000005656) #13	BGLAP (ENSCJAG00000046802) #14	ENSCJAG00000005636	SLC25A44 (ENSCJAG00000005625) #16	SEMA4A (ENSCJAG00000005605) #17	LMNA (ENSCJAG00000005413) #18	MEX3A (ENSCJAG00000007711) #19	RAB25 (ENSCJAG00000007715) #20	LAMTOR2 (ENSCJAG00000007739) #21	UBQLN4 (ENSCJAG00000007755) #22	SSR2 (ENSCJAG00000046590) #23	ARHGEF2 (ENSCJAG00000007846) #24	ENSCJAG00000007878	KHDC4 (ENSCJAG00000007881) #25	RIT1 (ENSCJAG00000061243) #26	ENSCJAG00000032919	SYT11 (ENSCJAG00000043885) #27	GON4L (ENSCJAG00000007977) #29	ENSCJAG00000063148 #35	DAP3 (ENSCJAG00000008125) #32	YY1AP1 (ENSCJAG00000042285) #33	MSTO1 (ENSCJAG00000008092) #35	ENSCJAG00000081873	ASH1L (ENSCJAG00000008157) #36	RUSC1 (ENSCJAG00000008263) #37
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f	ENSGT00390000008859.b.c
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f	ENSGT00390000008859.b.c
Hominidae	ANCESTRAL SPECIES	6	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f	ENSGT00390000008859.b.c
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.c.a #35	ENSGT00530000064067.c.b #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00530000064067.d #35	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	16	EIF2A (ENSGGOG00000015391)	SERP1 (ENSGGOG00000015388)	TSC22D2 (ENSGGOG00000024379)	ENSGGOG00000007109	RNF13 (ENSGGOG00000007103)	ANKUB1 (ENSGGOG00000011489)	COMMD2 (ENSGGOG00000003255)	WWTR1 (ENSGGOG00000000214)	TM4SF4 (ENSGGOG00000001835)	TM4SF1 (ENSGGOG00000003605)	TM4SF18 (ENSGGOG00000002355)	CP (ENSGGOG00000009531)	HPS3 (ENSGGOG00000016590)	HLTF (ENSGGOG00000001261)	GYG1 (ENSGGOG00000008980)	ENSGGOG00000027497 #22	CPA3 (ENSGGOG00000026314)	CPB1 (ENSGGOG00000005316)	AGTR1 (ENSGGOG00000001326)	ZIC1 (ENSGGOG00000001101)	ZIC4 (ENSGGOG00000042345)	PLSCR5 (ENSGGOG00000027798)	PLSCR1 (ENSGGOG00000010136)	ENSGGOG00000004864	PLSCR4 (ENSGGOG00000006475)	PLOD2 (ENSGGOG00000014284)	ENSGGOG00000042473	ENSGGOG00000026282	ENSGGOG00000042601	DIPK2A (ENSGGOG00000015140)	ENSGGOG00000042026
Gorilla	MODERN SPECIES		RHBG (ENSGGOG00000007638)	TSACC (ENSGGOG00000008582) #7	CCT3 (ENSGGOG00000023333) #8	GLMP (ENSGGOG00000014243) #10	TMEM79 (ENSGGOG00000014240) #11	SMG5 (ENSGGOG00000010932) #12	ENSGGOG00000010923 #13	BGLAP (ENSGGOG00000010916) #14	PMF1 (ENSGGOG00000037793)	SLC25A44 (ENSGGOG00000010910) #16	SEMA4A (ENSGGOG00000000814) #17	LMNA (ENSGGOG00000000813) #18	MEX3A (ENSGGOG00000004513) #19	RAB25 (ENSGGOG00000006821) #20	LAMTOR2 (ENSGGOG00000006818) #21	ENSGGOG00000008916 #22	SSR2 (ENSGGOG00000024769) #23	ARHGEF2 (ENSGGOG00000005907) #24	RXFP4 (ENSGGOG00000034869)	KHDC4 (ENSGGOG00000024568) #25	RIT1 (ENSGGOG00000001461) #26	SYT11 (ENSGGOG00000010111) #27	ENSGGOG00000025183 #33	GON4L (ENSGGOG00000000477) #29	ENSGGOG00000040593 #35	DAP3 (ENSGGOG00000007618) #32	YY1AP1 (ENSGGOG00000026024) #33	ENSGGOG00000000475 #35	ASH1L (ENSGGOG00000011218) #36	RUSC1 (ENSGGOG00000000408) #37	ENSGGOG00000039031
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.c.a #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00530000064067.d #35	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f
Pan	ANCESTRAL SPECIES		ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.c.a #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00940000156698 #36	ENSGT00940000155046.t.g.b.b	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES		RHBG (ENSPTRG00000001458)	TSACC (ENSPTRG00000001457)	CCT3 (ENSPTRG00000001456) #8	GLMP (ENSPTRG00000001455) #10	TMEM79 (ENSPTRG00000001453) #11	SMG5 (ENSPTRG00000023925) #12	PAQR6 (ENSPTRG00000001451) #13	BGLAP (ENSPTRG00000041553) #14	PMF1 (ENSPTRG00000001450)	SLC25A44 (ENSPTRG00000001449) #16	SEMA4A (ENSPTRG00000001448) #17	LMNA (ENSPTRG00000001447) #18	MEX3A (ENSPTRG00000030373) #19	RAB25 (ENSPTRG00000001446) #20	LAMTOR2 (ENSPTRG00000001445) #21	UBQLN4 (ENSPTRG00000001444) #22	SSR2 (ENSPTRG00000001442) #23	ARHGEF2 (ENSPTRG00000001441) #24	RXFP4 (ENSPTRG00000001439)	KHDC4 (ENSPTRG00000001438) #25	RIT1 (ENSPTRG00000001437) #26	SYT11 (ENSPTRG00000001436) #27	GON4L (ENSPTRG00000001433) #29	MSTO1 (ENSPTRG00000001428) #35	DAP3 (ENSPTRG00000001430) #32	YY1AP1 (ENSPTRG00000001429) #33	CLDN6 (ENSPTRG00000045058)	ENSPTRG00000047569	ASH1L (ENSPTRG00000001425) #36	RUSC1 (ENSPTRG00000001424) #37	ENSPTRG00000043354
Chimpanzee	MODERN SPECIES	199															ENSPTRG00000048190 #21	ENSPTRG00000051805 #22
Bonobo	MODERN SPECIES		RHBG (ENSPPAG00000032922)	TSACC (ENSPPAG00000040738) #7	CCT3 (ENSPPAG00000042161) #8	GLMP (ENSPPAG00000028749) #10	TMEM79 (ENSPPAG00000042037) #11	SMG5 (ENSPPAG00000011996) #12	ENSPPAG00000027236 #13	BGLAP (ENSPPAG00000042608) #14	ENSPPAG00000034289 #15	SLC25A44 (ENSPPAG00000027895) #16	SEMA4A (ENSPPAG00000043828) #17	LMNA (ENSPPAG00000037857) #18	MEX3A (ENSPPAG00000016303) #19	RAB25 (ENSPPAG00000031127) #20	LAMTOR2 (ENSPPAG00000037502) #21	UBQLN4 (ENSPPAG00000040262) #22	ENSPPAG00000036187 #23	ARHGEF2 (ENSPPAG00000043187) #24	RXFP4 (ENSPPAG00000011483)	KHDC4 (ENSPPAG00000028145) #25	RIT1 (ENSPPAG00000043026) #26	SYT11 (ENSPPAG00000039359) #27	GON4L (ENSPPAG00000030169) #29	ENSPPAG00000028555 #35	ENSPPAG00000035270	DAP3 (ENSPPAG00000030901) #32	YY1AP1 (ENSPPAG00000041804) #33	ENSPPAG00000036109	ASH1L (ENSPPAG00000031869) #36	RUSC1 (ENSPPAG00000030052) #37	ENSPPAG00000027399
Human	MODERN SPECIES		CCT3 (ENSG00000163468) #8	VHLL (ENSG00000189030)	GLMP (ENSG00000198715) #10	TMEM79 (ENSG00000163472) #11	SMG5 (ENSG00000198952) #12	PAQR6 (ENSG00000160781) #13	BGLAP (ENSG00000242252) #14	PMF1 (ENSG00000160783)	PMF1-BGLAP (ENSG00000260238)	SLC25A44 (ENSG00000160785) #16	SEMA4A (ENSG00000196189) #17	LMNA (ENSG00000160789) #18	MEX3A (ENSG00000254726) #19	RAB25 (ENSG00000132698) #20	LAMTOR2 (ENSG00000116586) #21	UBQLN4 (ENSG00000160803) #22	SSR2 (ENSG00000163479) #23	ARHGEF2 (ENSG00000116584) #24	RXFP4 (ENSG00000173080)	KHDC4 (ENSG00000132680) #25	RIT1 (ENSG00000143622) #26	SYT11 (ENSG00000132718) #27	GON4L (ENSG00000116580) #29	DAP3 (ENSG00000132676) #32	YY1AP1 (ENSG00000163374) #33	MSTO1 (ENSG00000125459) #35	ASH1L (ENSG00000116539) #36	RUSC1 (ENSG00000160753) #37	FDPS (ENSG00000160752)	PKLR (ENSG00000143627)	HCN3 (ENSG00000143630)
Orangutan	MODERN SPECIES		ENSPPYG00000000717	RHBG (ENSPPYG00000000718)	ENSPPYG00000031428 #7	CCT3 (ENSPPYG00000010639) #8	GLMP (ENSPPYG00000000721) #10	TMEM79 (ENSPPYG00000000722) #11	SMG5 (ENSPPYG00000000723) #12	PAQR6 (ENSPPYG00000000724) #13	ENSPPYG00000000725	SLC25A44 (ENSPPYG00000000726) #16	SEMA4A (ENSPPYG00000000727) #17	LMNA (ENSPPYG00000000728) #18	MEX3A (ENSPPYG00000000729) #19	RAB25 (ENSPPYG00000000730) #20	LAMTOR2 (ENSPPYG00000000731) #21	UBQLN4 (ENSPPYG00000000732) #22	SSR2 (ENSPPYG00000000733) #23	ARHGEF2 (ENSPPYG00000000734) #24	RXFP4 (ENSPPYG00000000735)	KHDC4 (ENSPPYG00000000736) #25	RIT1 (ENSPPYG00000000737) #26	SYT11 (ENSPPYG00000039531) #27	GON4L (ENSPPYG00000000739) #29	MSTO2P (ENSPPYG00000010648)	MSTO1 (ENSPPYG00000000740) #35	DAP3 (ENSPPYG00000000742) #32	YY1AP1 (ENSPPYG00000000743) #33	ASH1L (ENSPPYG00000000744) #36	ENSPPYG00000033728	RUSC1 (ENSPPYG00000000745) #37	ENSPPYG00000000746
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f	ENSGT00390000008859.b.c
Rhinopithecus	ANCESTRAL SPECIES	59	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b.c #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000164230	ENSGT00940000155399 #16	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.a.a #33
Black snub-nosed monkey	MODERN SPECIES	1571	TSACC (ENSRBIG00000036225) #7	CCT3 (ENSRBIG00000032821) #8	GLMP (ENSRBIG00000030275) #10	ENSRBIG00000032628 #11	SMG5 (ENSRBIG00000027428) #12	ENSRBIG00000027798 #13	BGLAP (ENSRBIG00000000752) #14	ENSRBIG00000036011	SLC25A44 (ENSRBIG00000041041) #16	ENSRBIG00000026928	SEMA4A (ENSRBIG00000037159) #17	LMNA (ENSRBIG00000041859) #18	MEX3A (ENSRBIG00000033197) #19	RAB25 (ENSRBIG00000044154) #20	LAMTOR2 (ENSRBIG00000043324) #21	UBQLN4 (ENSRBIG00000033879) #22	SSR2 (ENSRBIG00000039430) #23	ARHGEF2 (ENSRBIG00000035589) #24	RXFP4 (ENSRBIG00000032808)	KHDC4 (ENSRBIG00000013231) #25	ALLC (ENSRBIG00000032207)	DCDC2C (ENSRBIG00000042681)
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1378																ENSRROG00000045601 #22	SSR2 (ENSRROG00000037774) #23	ARHGEF2 (ENSRROG00000032685) #24	RXFP4 (ENSRROG00000013377)	KHDC4 (ENSRROG00000030403) #25	RIT1 (ENSRROG00000035955) #26	SYT11 (ENSRROG00000040729) #27	GON4L (ENSRROG00000002995) #29	MSTO1 (ENSRROG00000039402) #35	DAP3 (ENSRROG00000041228) #32	ENSRROG00000040709 #33	ENSRROG00000014134 #33
Golden snub-nosed monkey	MODERN SPECIES	1290					ENSRROG00000041912 #11	SMG5 (ENSRROG00000030035) #12	PAQR6 (ENSRROG00000042038) #13	ENSRROG00000038103	SLC25A44 (ENSRROG00000030201) #16	ENSRROG00000044575	SEMA4A (ENSRROG00000043198) #17	LMNA (ENSRROG00000037915) #18	MEX3A (ENSRROG00000029193) #19	RAB25 (ENSRROG00000028851) #20	LAMTOR2 (ENSRROG00000045270) #21	ENSRROG00000027233 #22
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f	ENSGT00390000008859.b.c
Vervet Monkey	MODERN SPECIES	12	RHBG (ENSCSAG00000002135)	TSACC (ENSCSAG00000002131) #7	CCT3 (ENSCSAG00000002128) #8	GLMP (ENSCSAG00000002123) #10	TMEM79 (ENSCSAG00000002125) #11	SMG5 (ENSCSAG00000002120) #12	PAQR6 (ENSCSAG00000002117) #13	BGLAP (ENSCSAG00000002112) #14	PMF1 (ENSCSAG00000002107)	SLC25A44 (ENSCSAG00000002104) #16	SEMA4A (ENSCSAG00000002102) #17	LMNA (ENSCSAG00000002099) #18	MEX3A (ENSCSAG00000002097) #19	RAB25 (ENSCSAG00000002096) #20	LAMTOR2 (ENSCSAG00000002094) #21	UBQLN4 (ENSCSAG00000002093) #22	SSR2 (ENSCSAG00000002090) #23	ARHGEF2 (ENSCSAG00000002088) #24	ENSCSAG00000000059	KHDC4 (ENSCSAG00000002082) #25	RIT1 (ENSCSAG00000002074) #26	SYT11 (ENSCSAG00000002072) #27	GON4L (ENSCSAG00000002060) #29	ENSCSAG00000002038 #35	DAP3 (ENSCSAG00000002035) #32	YY1AP1 (ENSCSAG00000002031) #33	ASH1L (ENSCSAG00000002027) #36	RUSC1 (ENSCSAG00000002023) #37	ENSCSAG00000002022	PKLR (ENSCSAG00000002021)	HCN3 (ENSCSAG00000002020)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.g.a #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00530000064067.h #35	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.g.a #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00530000064067.h #35	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f
Cercopithecinae_d	ANCESTRAL SPECIES	33	ENSGT00570000079224 #8	ENSGT01010000224083 #9	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.g.a #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33
Sooty mangabey	MODERN SPECIES	226	TSACC (ENSCATG00000032103) #7	CCT3 (ENSCATG00000032970) #8	GLMP (ENSCATG00000032524) #10	TMEM79 (ENSCATG00000041384) #11	SMG5 (ENSCATG00000030539) #12	PAQR6 (ENSCATG00000029286) #13	BGLAP (ENSCATG00000014375) #14	PMF1 (ENSCATG00000029246)	SLC25A44 (ENSCATG00000039803) #16	ENSCATG00000042076	SEMA4A (ENSCATG00000036260) #17	LMNA (ENSCATG00000033574) #18	MEX3A (ENSCATG00000032390) #19	RAB25 (ENSCATG00000029662) #20	LAMTOR2 (ENSCATG00000030341) #21	UBQLN4 (ENSCATG00000023959) #22	SSR2 (ENSCATG00000030169) #23	ARHGEF2 (ENSCATG00000029542) #24	RXFP4 (ENSCATG00000019172)	KHDC4 (ENSCATG00000034662) #25	RIT1 (ENSCATG00000045033) #26	SYT11 (ENSCATG00000038729) #27	GON4L (ENSCATG00000031497) #29	MSTO1 (ENSCATG00000041352) #35	DAP3 (ENSCATG00000037832) #32	YY1AP1 (ENSCATG00000042138) #33
Drill	MODERN SPECIES	1097	CCT3 (ENSMLEG00000036583) #8	ENSMLEG00000043471 #9	GLMP (ENSMLEG00000038171) #10	TMEM79 (ENSMLEG00000038027) #11	SMG5 (ENSMLEG00000041192) #12	PAQR6 (ENSMLEG00000038853) #13	BGLAP (ENSMLEG00000039620) #14	PMF1 (ENSMLEG00000032681)	SLC25A44 (ENSMLEG00000019841) #16	ENSMLEG00000037790	SEMA4A (ENSMLEG00000033397) #17	LMNA (ENSMLEG00000030821) #18	MEX3A (ENSMLEG00000023495) #19	RAB25 (ENSMLEG00000025037) #20	LAMTOR2 (ENSMLEG00000020600) #21	UBQLN4 (ENSMLEG00000036998) #22	SSR2 (ENSMLEG00000038454) #23	ARHGEF2 (ENSMLEG00000038613) #24	RXFP4 (ENSMLEG00000000539)	KHDC4 (ENSMLEG00000036924) #25	RIT1 (ENSMLEG00000030499) #26	SYT11 (ENSMLEG00000034240) #27	GON4L (ENSMLEG00000039636) #29
Olive baboon	MODERN SPECIES		CCT3 (ENSPANG00000026114) #8	ENSPANG00000003881 #9	GLMP (ENSPANG00000018021) #10	TMEM79 (ENSPANG00000011454) #11	SMG5 (ENSPANG00000011201) #12	PAQR6 (ENSPANG00000008734) #13	BGLAP (ENSPANG00000023523) #14	PMF1 (ENSPANG00000010692)	SLC25A44 (ENSPANG00000008735) #16	ENSPANG00000041668	SEMA4A (ENSPANG00000016075) #17	LMNA (ENSPANG00000003882) #18	MEX3A (ENSPANG00000020303) #19	RAB25 (ENSPANG00000003113) #20	LAMTOR2 (ENSPANG00000032414) #21	UBQLN4 (ENSPANG00000001757) #22	SSR2 (ENSPANG00000005571) #23	ARHGEF2 (ENSPANG00000006851) #24	ENSPANG00000004167	KHDC4 (ENSPANG00000011455) #25	RIT1 (ENSPANG00000035332) #26	SYT11 (ENSPANG00000018152) #27	GON4L (ENSPANG00000011456) #29	DAP3 (ENSPANG00000001758) #32	YY1AP1 (ENSPANG00000029721) #33	MSTO1 (ENSPANG00000006654) #35	ASH1L (ENSPANG00000004959) #36	ENSPANG00000045760	RUSC1 (ENSPANG00000006655) #37	FDPS (ENSPANG00000024920)	PKLR (ENSPANG00000022417)
Macaca	ANCESTRAL SPECIES		ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00390000002944.e.a.a.a.a	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.g.a #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00390000016256.l.a.a #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f.a
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	262	TSACC (ENSMNEG00000030389) #7	CCT3 (ENSMNEG00000027103) #8	GLMP (ENSMNEG00000034996) #10	TMEM79 (ENSMNEG00000040540) #11	SMG5 (ENSMNEG00000044425) #12	ENSMNEG00000037204 #13	BGLAP (ENSMNEG00000014728) #14	PMF1 (ENSMNEG00000030198)	SLC25A44 (ENSMNEG00000032439) #16	ENSMNEG00000041520	SEMA4A (ENSMNEG00000027619) #17	LMNA (ENSMNEG00000045506) #18	MEX3A (ENSMNEG00000031569) #19	RAB25 (ENSMNEG00000004251) #20	LAMTOR2 (ENSMNEG00000044990) #21	UBQLN4 (ENSMNEG00000028661) #22	ENSMNEG00000036868 #23	ARHGEF2 (ENSMNEG00000030024) #24	RXFP4 (ENSMNEG00000025991)	KHDC4 (ENSMNEG00000005131) #25	RIT1 (ENSMNEG00000039545) #26	SYT11 (ENSMNEG00000039442) #27	GON4L (ENSMNEG00000022837) #29	DAP3 (ENSMNEG00000043408) #32	YY1AP1 (ENSMNEG00000038421) #33	MSTO1 (ENSMNEG00000030351) #35	ASH1L (ENSMNEG00000004882) #36	RUSC1 (ENSMNEG00000037791) #37	ENSMNEG00000034281	ENSMNEG00000041237	PKLR (ENSMNEG00000009109)
Pig-tailed macaque	MODERN SPECIES	90	TECTB (ENSMNEG00000025162)	GPAM (ENSMNEG00000041070)	ENSMNEG00000038669	ADRA2A (ENSMNEG00000006398)	SHOC2 (ENSMNEG00000039245)	BBIP1 (ENSMNEG00000041769)	PDCD4 (ENSMNEG00000043104)	RBM20 (ENSMNEG00000030297)	SMC3 (ENSMNEG00000001042)	DUSP5 (ENSMNEG00000033790)	ENSMNEG00000038014	ENSMNEG00000042963	MXI1 (ENSMNEG00000034671)	ADD3 (ENSMNEG00000028760)	XPNPEP1 (ENSMNEG00000029393)	ENSMNEG00000035210 #22	ENSMNEG00000028414
Macaca_a	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000002390.b #11	ENSGT00390000005131 #10	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256.k #29	ENSGT00530000064067.g.a #35	ENSGT00530000064067.g.b #35	ENSGT00390000015248 #32	ENSGT00390000016256.l.b #33	ENSGT00390000016256.l.a.a #33	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074.f.a
Rhesus	MODERN SPECIES		RHBG (ENSMMUG00000017965)	TSACC (ENSMMUG00000051030) #7	CCT3 (ENSMMUG00000019034) #8	VHLL (ENSMMUG00000064443)	GLMP (ENSMMUG00000000092) #10	TMEM79 (ENSMMUG00000047929) #11	SMG5 (ENSMMUG00000000090) #12	PAQR6 (ENSMMUG00000000085) #13	BGLAP (ENSMMUG00000004902) #16	SEMA4A (ENSMMUG00000004901) #17	ENSMMUG00000037731	LMNA (ENSMMUG00000016096) #18	MEX3A (ENSMMUG00000052160) #19	RAB25 (ENSMMUG00000022306) #20	LAMTOR2 (ENSMMUG00000012126) #21	UBQLN4 (ENSMMUG00000009983) #22	SSR2 (ENSMMUG00000013495) #23	ARHGEF2 (ENSMMUG00000005092) #24	RXFP4 (ENSMMUG00000005090)	KHDC4 (ENSMMUG00000004648) #25	RIT1 (ENSMMUG00000053454) #26	SYT11 (ENSMMUG00000021312) #27	GON4L (ENSMMUG00000009987) #29	ENSMMUG00000062397 #35	DAP3 (ENSMMUG00000018080) #32	ASH1L (ENSMMUG00000023146) #36	ENSMMUG00000009981 #35	ENSMMUG00000058124	RUSC1 (ENSMMUG00000023145) #37	ENSMMUG00000063807	FDPS (ENSMMUG00000023144)
Crab-eating macaque	MODERN SPECIES	19	GPAM (ENSMFAG00000032340)	ENSMFAG00000049620	ENSMFAG00000063286	RBM20 (ENSMFAG00000036795)	SMC3 (ENSMFAG00000003098)	ENSMFAG00000063112	DUSP5 (ENSMFAG00000002031)	ENSMFAG00000065587	ENSMFAG00000059019	ENSMFAG00000002433	MXI1 (ENSMFAG00000030475)	ENSMFAG00000056864	ADD3 (ENSMFAG00000031457)	XPNPEP1 (ENSMFAG00000030034)	ENSMFAG00000051095	ENSMFAG00000031866 #22	ENSMFAG00000055089	ENSMFAG00000011968	ENSMFAG00000058560	ENSMFAG00000058920	ENSMFAG00000056460	SORCS1 (ENSMFAG00000042566)	ENSMFAG00000046202	ENSMFAG00000050436	SORCS3 (ENSMFAG00000044111)	CFAP58 (ENSMFAG00000035977)	ITPRIP (ENSMFAG00000057374)	GSTO2 (ENSMFAG00000050681)	ENSMFAG00000061086	GSTO1 (ENSMFAG00000033599)	CFAP43 (ENSMFAG00000043638)
Tarsier	MODERN SPECIES	1540															LAMTOR2 (ENSTSYG00000028246) #21	UBQLN4 (ENSTSYG00000011830) #22
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Mouse lemur	MODERN SPECIES	11	TSACC (ENSMICG00000002266) #7	ENSMICG00000030201 #8	ENSMICG00000038362	GLMP (ENSMICG00000002263) #10	TMEM79 (ENSMICG00000002260) #11	SMG5 (ENSMICG00000002257) #12	PAQR6 (ENSMICG00000002252) #13	BGLAP (ENSMICG00000045135) #14	ENSMICG00000002248	SLC25A44 (ENSMICG00000047168) #16	SEMA4A (ENSMICG00000002242) #17	LMNA (ENSMICG00000002236) #18	MEX3A (ENSMICG00000046214) #19	RAB25 (ENSMICG00000002230) #20	LAMTOR2 (ENSMICG00000002227) #21	UBQLN4 (ENSMICG00000002222) #22	ENSMICG00000038131 #23	ENSMICG00000030729	ARHGEF2 (ENSMICG00000002212) #24	KHDC4 (ENSMICG00000002202) #25	RIT1 (ENSMICG00000044667) #26	SYT11 (ENSMICG00000038586) #27	ENSMICG00000002183 #33	MSTO1 (ENSMICG00000028414) #35	DAP3 (ENSMICG00000031947) #32	ASH1L (ENSMICG00000007490) #36	RUSC1 (ENSMICG00000029028) #37	ENSMICG00000007468	PKLR (ENSMICG00000007458)	HCN3 (ENSMICG00000030454)	CLK2 (ENSMICG00000007436)
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Coquerels sifaka	MODERN SPECIES	750	RHBG (ENSPCOG00000010688)	TSACC (ENSPCOG00000018038) #7	CCT3 (ENSPCOG00000027102) #8	GLMP (ENSPCOG00000027438) #10	TMEM79 (ENSPCOG00000027811) #11	SMG5 (ENSPCOG00000004741) #12	PAQR6 (ENSPCOG00000024324) #13	BGLAP (ENSPCOG00000020241) #14	ENSPCOG00000022530	SLC25A44 (ENSPCOG00000017429) #16	SEMA4A (ENSPCOG00000021582) #17	ENSPCOG00000028240 #18	MEX3A (ENSPCOG00000019307) #19	RAB25 (ENSPCOG00000005144) #20	LAMTOR2 (ENSPCOG00000023468) #21	UBQLN4 (ENSPCOG00000017664) #22	SSR2 (ENSPCOG00000022217) #23	ENSPCOG00000019355	ARHGEF2 (ENSPCOG00000016528) #24	KHDC4 (ENSPCOG00000027660) #25	RIT1 (ENSPCOG00000027211) #26	SYT11 (ENSPCOG00000017038) #27	ENSPCOG00000024149 #33	MSTO1 (ENSPCOG00000017579) #35	DAP3 (ENSPCOG00000027412) #32	ASH1L (ENSPCOG00000017924) #36	RUSC1 (ENSPCOG00000025947) #37	ENSPCOG00000022505	PKLR (ENSPCOG00000028225)	HCN3 (ENSPCOG00000021822)	CLK2 (ENSPCOG00000027461)
Greater bamboo lemur	MODERN SPECIES	1411													MEX3A (ENSPSMG00000005991) #19	RAB25 (ENSPSMG00000006001) #20	LAMTOR2 (ENSPSMG00000006010) #21	UBQLN4 (ENSPSMG00000006027) #22	SSR2 (ENSPSMG00000006059) #23	ARHGEF2 (ENSPSMG00000006180) #24	RXFP4 (ENSPSMG00000006340)	KHDC4 (ENSPSMG00000006345) #25
Bushbaby	MODERN SPECIES	206	RHBG (ENSOGAG00000006682)	TSACC (ENSOGAG00000031578) #7	CCT3 (ENSOGAG00000008967) #8	GLMP (ENSOGAG00000030120) #10	TMEM79 (ENSOGAG00000012912) #11	SMG5 (ENSOGAG00000004966) #12	PAQR6 (ENSOGAG00000031893) #13	BGLAP (ENSOGAG00000025659) #14	PMF1 (ENSOGAG00000004964)	ENSOGAG00000034650 #16	SEMA4A (ENSOGAG00000025069) #17	LMNA (ENSOGAG00000016961) #18	MEX3A (ENSOGAG00000029891) #19	RAB25 (ENSOGAG00000016955) #20	LAMTOR2 (ENSOGAG00000016953) #21	UBQLN4 (ENSOGAG00000016948) #22	SSR2 (ENSOGAG00000016945) #23	ARHGEF2 (ENSOGAG00000011581) #24	ENSOGAG00000026040	KHDC4 (ENSOGAG00000002261) #25	ENSOGAG00000002260 #26	SYT11 (ENSOGAG00000002258) #27	ENSOGAG00000000849 #33	MSTO1 (ENSOGAG00000031236) #35	DAP3 (ENSOGAG00000000845) #32	ASH1L (ENSOGAG00000009609) #36	RUSC1 (ENSOGAG00000025498) #37	PKLR (ENSOGAG00000028418)	HCN3 (ENSOGAG00000009594)	CLK2 (ENSOGAG00000009589)	SCAMP3 (ENSOGAG00000009585)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00390000012642	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Tree shrew	MODERN SPECIES	3906													LMNA (ENSTBEG00000005069) #18	RAB25 (ENSTBEG00000004142) #20	LAMTOR2 (ENSTBEG00000003768) #21	UBQLN4 (ENSTBEG00000003066) #22	SSR2 (ENSTBEG00000002867) #23	ARHGEF2 (ENSTBEG00000001641) #24	RXFP4 (ENSTBEG00000001002)
Glires	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01090000260051.b.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Pika	MODERN SPECIES	3341										SLC25A44 (ENSOPRG00000003022) #16	SEMA4A (ENSOPRG00000002992) #17	LMNA (ENSOPRG00000002966) #18	MEX3A (ENSOPRG00000002937) #19	RAB25 (ENSOPRG00000002894) #20	LAMTOR2 (ENSOPRG00000002877) #21	UBQLN4 (ENSOPRG00000002851) #22	SSR2 (ENSOPRG00000002830) #23	ARHGEF2 (ENSOPRG00000002782) #24
Rabbit	MODERN SPECIES	4	MEF2D (ENSOCUG00000012173)	RHBG (ENSOCUG00000016130)	TSACC (ENSOCUG00000029754) #7	CCT3 (ENSOCUG00000000137) #8	GLMP (ENSOCUG00000026609) #10	ENSOCUG00000012899 #11	SMG5 (ENSOCUG00000012886) #12	BGLAP (ENSOCUG00000025958) #14	PMF1 (ENSOCUG00000012870)	SLC25A44 (ENSOCUG00000012861) #16	SEMA4A (ENSOCUG00000001326) #17	LMNA (ENSOCUG00000010011) #18	ENSOCUG00000005640 #19	RAB25 (ENSOCUG00000005634) #20	LAMTOR2 (ENSOCUG00000027994) #21	UBQLN4 (ENSOCUG00000007156) #22	SSR2 (ENSOCUG00000008455) #23	ARHGEF2 (ENSOCUG00000001937) #24	ENSOCUG00000026819	KHDC4 (ENSOCUG00000010430) #25	RIT1 (ENSOCUG00000006377) #26	SYT11 (ENSOCUG00000027971) #27	ENSOCUG00000026145 #33	ENSOCUG00000010191 #33	MSTO1 (ENSOCUG00000010186) #35	DAP3 (ENSOCUG00000004785) #32	ENSOCUG00000034353	ASH1L (ENSOCUG00000014986) #36	ENSOCUG00000038913 #37	FDPS (ENSOCUG00000033536)	PKLR (ENSOCUG00000014969)
Rodentia	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Rodentia_A	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Hystricomorpha	ANCESTRAL SPECIES	45	ENSGT00940000159463	ENSGT00950000182844.b.b.a	ENSGT00570000079224.z.a #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947	ENSGT00940000160917
Hystricomorpha_a	ANCESTRAL SPECIES	54	ENSGT00940000159463	ENSGT00950000182844.b.b.a	ENSGT00570000079224.y #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947	ENSGT00940000160917
Hystricomorpha_b	ANCESTRAL SPECIES	61	ENSGT00940000159463	ENSGT00950000182844.b.b.a	ENSGT00570000079224.z.a #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947	ENSGT00940000160917
Degu	MODERN SPECIES	73	MEF2D (ENSODEG00000010190)	RHBG (ENSODEG00000009136)	ENSODEG00000009974 #8	GLMP (ENSODEG00000009800) #10	TMEM79 (ENSODEG00000012508) #11	SMG5 (ENSODEG00000012237) #12	PAQR6 (ENSODEG00000010747) #13	BGLAP (ENSODEG00000010926) #14	PMF1 (ENSODEG00000011902)	SLC25A44 (ENSODEG00000009774) #16	SEMA4A (ENSODEG00000009359) #17	LMNA (ENSODEG00000009369) #18	MEX3A (ENSODEG00000009643) #19	RAB25 (ENSODEG00000009908) #20	LAMTOR2 (ENSODEG00000010141) #21	UBQLN4 (ENSODEG00000010901) #22	SSR2 (ENSODEG00000010659) #23	ARHGEF2 (ENSODEG00000011373) #24	ENSODEG00000019992	ENSODEG00000009528 #25	RIT1 (ENSODEG00000010128) #26	SYT11 (ENSODEG00000010870) #27	ENSODEG00000011008 #33	ENSODEG00000010737	MSTO1 (ENSODEG00000011191) #35	DAP3 (ENSODEG00000010674) #32	ASH1L (ENSODEG00000009920) #36	ENSODEG00000010812 #37	FDPS (ENSODEG00000010515)	PKLR (ENSODEG00000011272)	HCN3 (ENSODEG00000009743)
Long-tailed chinchilla	MODERN SPECIES	252	MEF2D (ENSCLAG00000004702)	RHBG (ENSCLAG00000004625)	ENSCLAG00000004359 #8	GLMP (ENSCLAG00000004192) #10	TMEM79 (ENSCLAG00000004142) #11	SMG5 (ENSCLAG00000003983) #12	PAQR6 (ENSCLAG00000003899) #13	BGLAP (ENSCLAG00000003710) #14	PMF1 (ENSCLAG00000003672)	SLC25A44 (ENSCLAG00000005587) #16	SEMA4A (ENSCLAG00000005297) #17	LMNA (ENSCLAG00000003894) #18	MEX3A (ENSCLAG00000003842) #19	RAB25 (ENSCLAG00000003784) #20	LAMTOR2 (ENSCLAG00000003700) #21	UBQLN4 (ENSCLAG00000003519) #22	SSR2 (ENSCLAG00000003363) #23	ARHGEF2 (ENSCLAG00000013596) #24	KHDC4 (ENSCLAG00000010544) #25	RIT1 (ENSCLAG00000013305) #26	SYT11 (ENSCLAG00000013172) #27	ENSCLAG00000006556 #33	MSTO1 (ENSCLAG00000006273) #35	DAP3 (ENSCLAG00000005599) #32	ASH1L (ENSCLAG00000004536) #36	RUSC1 (ENSCLAG00000005579) #37	FDPS (ENSCLAG00000005410)	PKLR (ENSCLAG00000005136)	HCN3 (ENSCLAG00000005021)	CLK2 (ENSCLAG00000003873)	SCAMP3 (ENSCLAG00000003649)
Guinea pig	MODERN SPECIES	10	MEF2D (ENSCPOG00000036656)	RHBG (ENSCPOG00000011135)	CCT3 (ENSCPOG00000009131) #8	GLMP (ENSCPOG00000032634) #10	TMEM79 (ENSCPOG00000033881) #11	SMG5 (ENSCPOG00000015696) #12	PAQR6 (ENSCPOG00000019726) #13	BGLAP (ENSCPOG00000040505) #14	PMF1 (ENSCPOG00000015695)	SLC25A44 (ENSCPOG00000021129) #16	SEMA4A (ENSCPOG00000015694) #17	LMNA (ENSCPOG00000023214) #18	MEX3A (ENSCPOG00000020219) #19	RAB25 (ENSCPOG00000002472) #20	LAMTOR2 (ENSCPOG00000032238) #21	UBQLN4 (ENSCPOG00000002467) #22	SSR2 (ENSCPOG00000023729) #23	ARHGEF2 (ENSCPOG00000025396) #24	ENSCPOG00000032356	KHDC4 (ENSCPOG00000004870) #25	RIT1 (ENSCPOG00000004868) #26	SYT11 (ENSCPOG00000004866) #27	ENSCPOG00000004859 #33	MSTO1 (ENSCPOG00000004857) #35	DAP3 (ENSCPOG00000030924) #32	ASH1L (ENSCPOG00000004801) #36	RUSC1 (ENSCPOG00000032934) #37	FDPS (ENSCPOG00000015363)	PKLR (ENSCPOG00000011202)	HCN3 (ENSCPOG00000027026)	CLK2 (ENSCPOG00000003176)
Naked mole-rat female	MODERN SPECIES	10	IQGAP3 (ENSHGLG00000018362)	MEF2D (ENSHGLG00000019055)	RHBG (ENSHGLG00000005998)	ENSHGLG00000003153 #8	GLMP (ENSHGLG00000041332) #10	TMEM79 (ENSHGLG00000018185) #11	SMG5 (ENSHGLG00000019152) #12	PAQR6 (ENSHGLG00000015640) #13	ENSHGLG00000007944 #14	SLC25A44 (ENSHGLG00000042222) #16	SEMA4A (ENSHGLG00000003587) #17	ENSHGLG00000036594 #18	MEX3A (ENSHGLG00000041429) #19	RAB25 (ENSHGLG00000005517) #20	LAMTOR2 (ENSHGLG00000036352) #21	UBQLN4 (ENSHGLG00000003684) #22	SSR2 (ENSHGLG00000035940) #23	RXFP4 (ENSHGLG00000037004)	KHDC4 (ENSHGLG00000010495) #25	ENSHGLG00000034706 #26	SYT11 (ENSHGLG00000032288) #27	ENSHGLG00000006556 #33	MSTO1 (ENSHGLG00000018369) #35	DAP3 (ENSHGLG00000013978) #32	ASH1L (ENSHGLG00000008090) #36	ENSHGLG00000049863	ENSHGLG00000006300 #37	ENSHGLG00000005618
Sciuridae	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132.e #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Eurasian red squirrel	MODERN SPECIES		RHBG (ENSSVLG00005001146)	TSACC (ENSSVLG00005001124) #7	CCT3 (ENSSVLG00005001076) #8	GLMP (ENSSVLG00005001024) #10	ENSSVLG00005000998	SMG5 (ENSSVLG00005000972) #12	PAQR6 (ENSSVLG00005000936) #13	BGLAP (ENSSVLG00005000913) #14	PMF1 (ENSSVLG00005000891)	SLC25A44 (ENSSVLG00005000872) #16	SEMA4A (ENSSVLG00005000802) #17	LMNA (ENSSVLG00005000714) #18	MEX3A (ENSSVLG00005000673) #19	RAB25 (ENSSVLG00005000653) #20	LAMTOR2 (ENSSVLG00005000628) #21	UBQLN4 (ENSSVLG00005000591) #22	SSR2 (ENSSVLG00005000552) #23	ARHGEF2 (ENSSVLG00005000357) #24	RXFP4 (ENSSVLG00005000258)	KHDC4 (ENSSVLG00005000224) #25	ENSSVLG00005000188 #26	ENSSVLG00005000171 #27	ENSSVLG00005000147 #33	MSTO1 (ENSSVLG00005000136) #35	ENSSVLG00005000118 #36	RUSC1 (ENSSVLG00005000107) #37	FDPS (ENSSVLG00005000103)	PKLR (ENSSVLG00005000101)	HCN3 (ENSSVLG00005000099)	CLK2 (ENSSVLG00005019777)	SCAMP3 (ENSSVLG00005019647)
Marmotini	ANCESTRAL SPECIES	33	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132.e #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Marmotini_b	ANCESTRAL SPECIES	37	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132.e #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Arctic ground squirrel	MODERN SPECIES	309	RHBG (ENSUPAG00010004243)	TSACC (ENSUPAG00010004234) #7	CCT3 (ENSUPAG00010004189) #8	GLMP (ENSUPAG00010004142) #10	TMEM79 (ENSUPAG00010004129) #11	SMG5 (ENSUPAG00010004091) #12	ENSUPAG00010004061 #13	BGLAP (ENSUPAG00010004045) #14	PMF1 (ENSUPAG00010004034)	SLC25A44 (ENSUPAG00010004013) #16	SEMA4A (ENSUPAG00010003712) #17	LMNA (ENSUPAG00010003669) #18	MEX3A (ENSUPAG00010003653) #19	RAB25 (ENSUPAG00010003640) #20	LAMTOR2 (ENSUPAG00010003634) #21	UBQLN4 (ENSUPAG00010003613) #22	SSR2 (ENSUPAG00010003598) #23	ARHGEF2 (ENSUPAG00010003114) #24	ENSUPAG00010003101	KHDC4 (ENSUPAG00010003067) #25	ENSUPAG00010003055 #26	SYT11 (ENSUPAG00010003045) #27	ENSUPAG00010002975 #33	MSTO1 (ENSUPAG00010002943) #35	ENSUPAG00010002886 #32	ASH1L (ENSUPAG00010002818) #36	RUSC1 (ENSUPAG00010002787) #37	FDPS (ENSUPAG00010002775)	PKLR (ENSUPAG00010002743)	HCN3 (ENSUPAG00010002732)	CLK2 (ENSUPAG00010002672)
Squirrel	MODERN SPECIES	180	TSACC (ENSSTOG00000001810) #7	CCT3 (ENSSTOG00000001798) #8	GLMP (ENSSTOG00000015763) #10	TMEM79 (ENSSTOG00000026140) #11	SMG5 (ENSSTOG00000001780) #12	PAQR6 (ENSSTOG00000001772) #13	BGLAP (ENSSTOG00000027908) #14	ENSSTOG00000034466	PMF1 (ENSSTOG00000001768)	SLC25A44 (ENSSTOG00000001764) #16	SEMA4A (ENSSTOG00000028050) #17	LMNA (ENSSTOG00000001758) #18	MEX3A (ENSSTOG00000024275) #19	RAB25 (ENSSTOG00000000634) #20	LAMTOR2 (ENSSTOG00000023389) #21	UBQLN4 (ENSSTOG00000020043) #22	SSR2 (ENSSTOG00000028971) #23	ARHGEF2 (ENSSTOG00000000620) #24	RXFP4 (ENSSTOG00000000616)	KHDC4 (ENSSTOG00000004732) #25	RIT1 (ENSSTOG00000021028) #26	SYT11 (ENSSTOG00000004720) #27	ENSSTOG00000004664 #33	MSTO1 (ENSSTOG00000004655) #35	DAP3 (ENSSTOG00000004627) #32	ASH1L (ENSSTOG00000019952) #36	RUSC1 (ENSSTOG00000004516) #37	ENSSTOG00000004475	PKLR (ENSSTOG00000022480)	HCN3 (ENSSTOG00000008989)	CLK2 (ENSSTOG00000008974)
Alpin marmot	MODERN SPECIES	85	RHBG (ENSMMMG00000013553)	TSACC (ENSMMMG00000013564) #7	CCT3 (ENSMMMG00000013571) #8	GLMP (ENSMMMG00000013644) #10	TMEM79 (ENSMMMG00000013693) #11	SMG5 (ENSMMMG00000013706) #12	PAQR6 (ENSMMMG00000013724) #13	BGLAP (ENSMMMG00000013734) #14	ENSMMMG00000013758	SLC25A44 (ENSMMMG00000013773) #16	SEMA4A (ENSMMMG00000013785) #17	LMNA (ENSMMMG00000013831) #18	MEX3A (ENSMMMG00000013855) #19	RAB25 (ENSMMMG00000013857) #20	LAMTOR2 (ENSMMMG00000013864) #21	UBQLN4 (ENSMMMG00000013874) #22	SSR2 (ENSMMMG00000013889) #23	ARHGEF2 (ENSMMMG00000013899) #24	RXFP4 (ENSMMMG00000014101)	KHDC4 (ENSMMMG00000014104) #25	ENSMMMG00000014145 #26	SYT11 (ENSMMMG00000014151) #27	ENSMMMG00000014163 #33	MSTO1 (ENSMMMG00000014213) #35	DAP3 (ENSMMMG00000014245) #32	ASH1L (ENSMMMG00000014324) #36	ENSMMMG00000014387 #37	FDPS (ENSMMMG00000014395)	PKLR (ENSMMMG00000014412)	HCN3 (ENSMMMG00000014457)	CLK2 (ENSMMMG00000014477)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Kangaroo rat	MODERN SPECIES	345											Sema4a (ENSDORG00000008821) #17	Lmna (ENSDORG00000002470) #18	Mex3a (ENSDORG00000002921) #19	Rab25 (ENSDORG00000002922) #20	Lamtor2 (ENSDORG00000002923) #21	Ubqln4 (ENSDORG00000010538) #22	ENSDORG00000010536 #23	Arhgef2 (ENSDORG00000012162) #24	Khdc4 (ENSDORG00000014602) #25	Rit1 (ENSDORG00000014601) #26	Syt11 (ENSDORG00000023709) #27	Gon4l (ENSDORG00000003598) #33	Msto1 (ENSDORG00000029541) #35	Dap3 (ENSDORG00000003596) #32	Ash1l (ENSDORG00000025575) #36	ENSDORG00000025813 #37	ENSDORG00000024404 #37	Fdps (ENSDORG00000005366)	ENSDORG00000028002	Pklr (ENSDORG00000011632)	ENSDORG00000011629
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Lesser Egyptian jerboa	MODERN SPECIES	141	Mef2d (ENSJJAG00000011790)	ENSJJAG00000017067	Cct3 (ENSJJAG00000013939) #8	ENSJJAG00000019201	Tmem79 (ENSJJAG00000023610) #11	Smg5 (ENSJJAG00000022763) #12	Paqr6 (ENSJJAG00000001367) #13	ENSJJAG00000000652 #14	Pmf1 (ENSJJAG00000013470)	Slc25a44 (ENSJJAG00000001462) #16	Sema4a (ENSJJAG00000016229) #17	Lmna (ENSJJAG00000019904) #18	Mex3a (ENSJJAG00000020484) #19	Rab25 (ENSJJAG00000021013) #20	ENSJJAG00000021135 #21	Ubqln4 (ENSJJAG00000002118) #22	Ssr2 (ENSJJAG00000024209) #23	ENSJJAG00000016067 #24	ENSJJAG00000017646 #24	Rxfp4 (ENSJJAG00000013686)	ENSJJAG00000020627 #25	Rit1 (ENSJJAG00000023411) #26	ENSJJAG00000010636 #27	ENSJJAG00000013614 #33	Msto1 (ENSJJAG00000019140) #35	Dap3 (ENSJJAG00000010235) #32	Ash1l (ENSJJAG00000017942) #36	Rusc1 (ENSJJAG00000001429) #37	Pklr (ENSJJAG00000019099)	Hcn3 (ENSJJAG00000017693)	Clk2 (ENSJJAG00000020860)
Muroidea	ANCESTRAL SPECIES	6	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224.x #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224.x #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Golden Hamster	MODERN SPECIES	714	Iqgap3 (ENSMAUG00000008455)	Mef2d (ENSMAUG00000016452)	Rhbg (ENSMAUG00000009341)	Tsacc (ENSMAUG00000016723) #7	ENSMAUG00000014449 #8	Tmem79 (ENSMAUG00000014791) #11	Smg5 (ENSMAUG00000010381) #12	Paqr6 (ENSMAUG00000010297) #13	ENSMAUG00000015288 #14	Pmf1 (ENSMAUG00000019629)	Slc25a44 (ENSMAUG00000021047) #16	ENSMAUG00000017061 #17	Lmna (ENSMAUG00000012838) #18	Mex3a (ENSMAUG00000012601) #19	Lamtor2 (ENSMAUG00000000547) #21	Ubqln4 (ENSMAUG00000007686) #22	Ssr2 (ENSMAUG00000021161) #23	ENSMAUG00000019940 #24	ENSMAUG00000013645 #24	Khdc4 (ENSMAUG00000019676) #25	Rit1 (ENSMAUG00000000572) #26	ENSMAUG00000013419 #27	ENSMAUG00000000631 #33	Msto1 (ENSMAUG00000020345) #35	Ash1l (ENSMAUG00000000702) #36	ENSMAUG00000017088 #37	Fdps (ENSMAUG00000020872)	Pklr (ENSMAUG00000012808)	Hcn3 (ENSMAUG00000017469)	Clk2 (ENSMAUG00000016789)	Scamp3 (ENSMAUG00000010273)
Chinese hamster chok1gshd	MODERN SPECIES	352	Rhbg (ENSCGRG00001000730)	Tsacc (ENSCGRG00001019825) #7	Cct3 (ENSCGRG00001015935) #8	Glmp (ENSCGRG00001007094) #10	Tmem79 (ENSCGRG00001024551) #11	Smg5 (ENSCGRG00001006336) #12	Paqr6 (ENSCGRG00001016796) #13	ENSCGRG00001014532 #14	Pmf1 (ENSCGRG00001010918)	Slc25a44 (ENSCGRG00001021651) #16	Sema4a (ENSCGRG00001020918) #17	Lmna (ENSCGRG00001003129) #18	Mex3a (ENSCGRG00001000412) #19	Rab25 (ENSCGRG00001017341) #20	Lamtor2 (ENSCGRG00001008748) #21	Ubqln4 (ENSCGRG00001019653) #22	Ssr2 (ENSCGRG00001006822) #23	Arhgef2 (ENSCGRG00001006987) #24	Rxfp4 (ENSCGRG00001002374)	Khdc4 (ENSCGRG00001012564) #25	Rit1 (ENSCGRG00001004542) #26	Syt11 (ENSCGRG00001023824) #27	Gon4l (ENSCGRG00001023253) #33	Msto1 (ENSCGRG00001015681) #35	Dap3 (ENSCGRG00001022521) #32	Ash1l (ENSCGRG00001011192) #36	Rusc1 (ENSCGRG00001009459) #37	Fdps (ENSCGRG00001025003)	ENSCGRG00001023534	Pklr (ENSCGRG00001023372)	Hcn3 (ENSCGRG00001011318)
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224.x #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Prairie vole	DUPLICATION
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	8	ENSMOCG00000022002	Tsacc (ENSMOCG00000013419) #7	Cct3 (ENSMOCG00000010144) #8	Glmp (ENSMOCG00000009096) #10	Tmem79 (ENSMOCG00000017414) #11	Smg5 (ENSMOCG00000016590) #12	Paqr6 (ENSMOCG00000006437) #13	ENSMOCG00000019680 #14	ENSMOCG00000018426	Slc25a44 (ENSMOCG00000014671) #16	Sema4a (ENSMOCG00000022467) #17	Lmna (ENSMOCG00000011854) #18	Mex3a (ENSMOCG00000017881) #19	Rab25 (ENSMOCG00000010953) #20	Lamtor2 (ENSMOCG00000018988) #21	ENSMOCG00000013140 #22	Ssr2 (ENSMOCG00000001890) #23	ENSMOCG00000020991 #24	ENSMOCG00000019234 #24	ENSMOCG00000007816 #25
Prairie vole	MODERN SPECIES	360	Ptchd1 (ENSMOCG00000020483)	Prdx4 (ENSMOCG00000014602)	ENSMOCG00000002108	Sat1 (ENSMOCG00000012276)	ENSMOCG00000012729	ENSMOCG00000021049	ENSMOCG00000013763	Spin2c (ENSMOCG00000001348)	ENSMOCG00000003551	Kctd12b (ENSMOCG00000015728)	Klf8 (ENSMOCG00000000163)	ENSMOCG00000002121	ENSMOCG00000013664	Rragb (ENSMOCG00000010568)	Mageh1 (ENSMOCG00000010509)	ENSMOCG00000010679 #22	Tmem29 (ENSMOCG00000020676)	ENSMOCG00000021282	Alas2 (ENSMOCG00000021931)	Apex2 (ENSMOCG00000004339)	Pfkfb1 (ENSMOCG00000017052)	ENSMOCG00000017394	Maged2 (ENSMOCG00000013159)	Gnl3l (ENSMOCG00000021622)	Fgd1 (ENSMOCG00000006370)	Tsr2 (ENSMOCG00000006662)	Wnk3 (ENSMOCG00000005941)	Fam120c (ENSMOCG00000019667)	Phf8 (ENSMOCG00000014989)	Huwe1 (ENSMOCG00000009594)	ENSMOCG00000000414
Prairie vole	MODERN SPECIES	5	Ticam2 (ENSMOCG00000002517)	Fem1c (ENSMOCG00000009368)	Ccdc112 (ENSMOCG00000014847)	Pggt1b (ENSMOCG00000020848)	Trim36 (ENSMOCG00000005907)	ENSMOCG00000000243	Kcnn2 (ENSMOCG00000021123)	Ythdc2 (ENSMOCG00000011740)	Mcc (ENSMOCG00000013709)	Dcp2 (ENSMOCG00000014965)	Myot (ENSMOCG00000002496)	Gm10267 (ENSMOCG00000021096)	Gm37797 (ENSMOCG00000014585)	Spink12 (ENSMOCG00000003286)	Spink6 (ENSMOCG00000022042)	ENSMOCG00000016974 #22	Spink14 (ENSMOCG00000003998)	Spink5 (ENSMOCG00000015103)	Gm94 (ENSMOCG00000021778)	Scgb3a2 (ENSMOCG00000004730)	Spink1 (ENSMOCG00000020829)	ENSMOCG00000011603	Jakmip2 (ENSMOCG00000020018)	ENSMOCG00000019124	Stk32a (ENSMOCG00000013476)	Ppp2r2b (ENSMOCG00000011221)	Gpr151 (ENSMOCG00000010704)	Tcerg1 (ENSMOCG00000021988)	Pou4f3 (ENSMOCG00000014304)	Rbm27 (ENSMOCG00000019479)	Lars (ENSMOCG00000002092)
Northern American deer mouse	MODERN SPECIES	19	Rhbg (ENSPEMG00000011996)	Tsacc (ENSPEMG00000014593) #7	Cct3 (ENSPEMG00000015732) #8	Glmp (ENSPEMG00000013529) #10	Tmem79 (ENSPEMG00000007739) #11	Smg5 (ENSPEMG00000001819) #12	Paqr6 (ENSPEMG00000002777) #13	ENSPEMG00000025586 #14	Pmf1 (ENSPEMG00000012625)	Slc25a44 (ENSPEMG00000013362) #16	Sema4a (ENSPEMG00000015516) #17	Lmna (ENSPEMG00000015821) #18	Mex3a (ENSPEMG00000019014) #19	Rab25 (ENSPEMG00000007548) #20	Lamtor2 (ENSPEMG00000009818) #21	Ubqln4 (ENSPEMG00000016759) #22	Ssr2 (ENSPEMG00000012464) #23	Arhgef2 (ENSPEMG00000002997) #24	Rxfp4 (ENSPEMG00000011662)	Khdc4 (ENSPEMG00000007794) #25	Rit1 (ENSPEMG00000030433) #26	Syt11 (ENSPEMG00000003809) #27	Gon4l (ENSPEMG00000017252) #33	Msto1 (ENSPEMG00000016178) #35	ENSPEMG00000019185 #32	Ash1l (ENSPEMG00000006789) #36	Rusc1 (ENSPEMG00000018232) #37	Fdps (ENSPEMG00000030569)	Pklr (ENSPEMG00000010915)	Hcn3 (ENSPEMG00000009033)	Clk2 (ENSPEMG00000012240)
Murinae	ANCESTRAL SPECIES	5	ENSGT00950000182844.b.b.a	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b.u #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023	ENSGT00940000154947
Mus	ANCESTRAL SPECIES	7	ENSGT00950000182844.b.b.a.b	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131 #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b.v #37	ENSGT00900000141033.b.b.u #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Mus_A	ANCESTRAL SPECIES	9	ENSGT00950000182844.b.b.a.b	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131.e #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b.v #37	ENSGT00900000141033.b.b.u #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Mus_B	ANCESTRAL SPECIES	8	ENSGT00950000182844.b.b.a.b	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131.e #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b.v #37	ENSGT00900000141033.b.b.u #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Mouse	MODERN SPECIES	12	Cct3 (ENSMUSG00000001416) #8	Glmp (ENSMUSG00000001418) #10	Tmem79 (ENSMUSG00000001420) #11	Smg5 (ENSMUSG00000001415) #12	Paqr6 (ENSMUSG00000041423) #13	Bglap3 (ENSMUSG00000074489) #14	Bglap2 (ENSMUSG00000074486) #14	Bglap (ENSMUSG00000074483) #14	Pmf1 (ENSMUSG00000028066)	Slc25a44 (ENSMUSG00000050144) #16	Sema4a (ENSMUSG00000028064) #17	Lmna (ENSMUSG00000028063) #18	Mex3a (ENSMUSG00000074480) #19	Rab25 (ENSMUSG00000008601) #20	Lamtor2 (ENSMUSG00000028062) #21	Ubqln4 (ENSMUSG00000008604) #22	Ssr2 (ENSMUSG00000041355) #23	Arhgef2 (ENSMUSG00000028059) #24	Rxfp4 (ENSMUSG00000049741)	Khdc4 (ENSMUSG00000028060) #25	Rit1 (ENSMUSG00000028057) #26	Syt11 (ENSMUSG00000068923) #27	Gon4l (ENSMUSG00000054199) #33	Msto1 (ENSMUSG00000068922) #35	Dap3 (ENSMUSG00000068921) #32	Ash1l (ENSMUSG00000028053) #36	Rusc1 (ENSMUSG00000041263) #37	Fdps (ENSMUSG00000059743)	Pklr (ENSMUSG00000041237)	Hcn3 (ENSMUSG00000028051)	Clk2 (ENSMUSG00000068917)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00950000182844.b.b.a.b	ENSGT00390000012524 #7	ENSGT00570000079224 #8	ENSGT00390000005131.e #10	ENSGT00390000002390.b #11	ENSGT00940000154566 #12	ENSGT00940000160567 #13	ENSGT00410000026290 #14	ENSGT00940000162656	ENSGT00940000155399 #16	ENSGT00940000161509 #17	ENSGT00940000157244 #18	ENSGT00940000161732 #19	ENSGT00940000158230 #20	ENSGT00390000006100 #21	ENSGT00940000155620 #22	ENSGT00390000005125 #23	ENSGT00940000158341 #24	ENSGT01030000234534.B.a.a.b	ENSGT00510000047412.a #25	ENSGT00940000160132 #26	ENSGT00940000159088 #27	ENSGT00390000016256 #33	ENSGT00530000064067 #35	ENSGT00390000015248 #32	ENSGT00940000156698 #36	ENSGT00900000141033.b.b.v #37	ENSGT00900000141033.b.b.u #37	ENSGT00900000141074	ENSGT00390000008859.b.c	ENSGT00940000162023
Steppe mouse	MODERN SPECIES	2494	ENSMSIG00000029349 #7	Cct3 (ENSMSIG00000029307) #8	Glmp (ENSMSIG00000029280) #10	Tmem79 (ENSMSIG00000029273) #11	Smg5 (ENSMSIG00000029250) #12	ENSMSIG00000029245 #13	ENSMSIG00000029238 #14	Pmf1 (ENSMSIG00000029235)	Slc25a44 (ENSMSIG00000029225) #16	ENSMSIG00000029223	Sema4a (ENSMSIG00000029207) #17	Lmna (ENSMSIG00000029196) #18	ENSMSIG00000029193 #19	Rab25 (ENSMSIG00000029192) #20	Lamtor2 (ENSMSIG00000029190) #21	Ubqln4 (ENSMSIG00000029187) #22	Ssr2 (ENSMSIG00000029173) #23	Arhgef2 (ENSMSIG00000028473) #24	ENSMSIG00000028469	Khdc4 (ENSMSIG00000028451) #25	Rit1 (ENSMSIG00000028448) #26	Syt11 (ENSMSIG00000028436) #27
spretus	MODERN SPECIES	12	Cct3 (MGP_SPRETEiJ_G0026101) #8	Glmp (MGP_SPRETEiJ_G0026102) #10	Tmem79 (MGP_SPRETEiJ_G0026103) #11	Smg5 (MGP_SPRETEiJ_G0026104) #12	Paqr6 (MGP_SPRETEiJ_G0026105) #13	MGP_SPRETEiJ_G0026106 #14	MGP_SPRETEiJ_G0026108 #14	MGP_SPRETEiJ_G0026107 #14	Pmf1 (MGP_SPRETEiJ_G0026109)	Slc25a44 (MGP_SPRETEiJ_G0026110) #16	Sema4a (MGP_SPRETEiJ_G0026111) #17	Lmna (MGP_SPRETEiJ_G0026112) #18	MGP_SPRETEiJ_G0026113 #19	Rab25 (MGP_SPRETEiJ_G0026114) #20	Lamtor2 (MGP_SPRETEiJ_G0026115) #21	Ubqln4 (MGP_SPRETEiJ_G0026116) #22	Ssr2 (MGP_SPRETEiJ_G0026117) #23	Arhgef2 (MGP_SPRETEiJ_G0026118) #24	Rxfp4 (MGP_SPRETEiJ_G0026119)	Khdc4 (MGP_SPRETEiJ_G0026120) #25	Rit1 (MGP_SPRETEiJ_G0026121) #26	Syt11 (MGP_SPRETEiJ_G0026122) #27	Gon4l (MGP_SPRETEiJ_G0026123) #33	Msto1 (MGP_SPRETEiJ_G0026124) #35	Dap3 (MGP_SPRETEiJ_G0026125) #32	Ash1l (MGP_SPRETEiJ_G0026126) #36	MGP_SPRETEiJ_G0026127 #37	Rusc1 (MGP_SPRETEiJ_G0026128) #37	Fdps (MGP_SPRETEiJ_G0026129)	Pklr (MGP_SPRETEiJ_G0026130)	Hcn3 (MGP_SPRETEiJ_G0026131)
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0025158	Tsacc (MGP_CAROLIEiJ_G0025159) #7	Cct3 (MGP_CAROLIEiJ_G0025160) #8	Glmp (MGP_CAROLIEiJ_G0025161) #10	Tmem79 (MGP_CAROLIEiJ_G0025162) #11	Smg5 (MGP_CAROLIEiJ_G0025163) #12	Paqr6 (MGP_CAROLIEiJ_G0025164) #13	MGP_CAROLIEiJ_G0025165 #14	Pmf1 (MGP_CAROLIEiJ_G0025166)	Slc25a44 (MGP_CAROLIEiJ_G0025167) #16	Sema4a (MGP_CAROLIEiJ_G0025168) #17	Lmna (MGP_CAROLIEiJ_G0025169) #18	Mex3a (MGP_CAROLIEiJ_G0025170) #19	Rab25 (MGP_CAROLIEiJ_G0025171) #20	Lamtor2 (MGP_CAROLIEiJ_G0025172) #21	Ubqln4 (MGP_CAROLIEiJ_G0025173) #22	Ssr2 (MGP_CAROLIEiJ_G0025174) #23	Arhgef2 (MGP_CAROLIEiJ_G0025175) #24	Rxfp4 (MGP_CAROLIEiJ_G0025176)	Khdc4 (MGP_CAROLIEiJ_G0025177) #25	Rit1 (MGP_CAROLIEiJ_G0025178) #26	Syt11 (MGP_CAROLIEiJ_G0025179) #27	MGP_CAROLIEiJ_G0025180 #33	Msto1 (MGP_CAROLIEiJ_G0025181) #35	Dap3 (MGP_CAROLIEiJ_G0025182) #32	Ash1l (MGP_CAROLIEiJ_G0025183) #36	MGP_CAROLIEiJ_G0025184 #37	Rusc1 (MGP_CAROLIEiJ_G0025185) #37	Fdps (MGP_CAROLIEiJ_G0025186)	Pklr (MGP_CAROLIEiJ_G0025187)	Hcn3 (MGP_CAROLIEiJ_G0025188)
Shrew mouse	MODERN SPECIES	17	Tsacc (MGP_PahariEiJ_G0026602) #7	MGP_PahariEiJ_G0026603 #8	Glmp (MGP_PahariEiJ_G0026604) #10	Tmem79 (MGP_PahariEiJ_G0026605) #11	Smg5 (MGP_PahariEiJ_G0026606) #12	Paqr6 (MGP_PahariEiJ_G0026607) #13	MGP_PahariEiJ_G0026610 #14	MGP_PahariEiJ_G0026609 #14	Pmf1 (MGP_PahariEiJ_G0026611)	Slc25a44 (MGP_PahariEiJ_G0026612) #16	Sema4a (MGP_PahariEiJ_G0026613) #17	Lmna (MGP_PahariEiJ_G0026614) #18	Mex3a (MGP_PahariEiJ_G0026615) #19	Rab25 (MGP_PahariEiJ_G0026616) #20	Lamtor2 (MGP_PahariEiJ_G0026617) #21	Ubqln4 (MGP_PahariEiJ_G0026618) #22	Ssr2 (MGP_PahariEiJ_G0026619) #23	Arhgef2 (MGP_PahariEiJ_G0026620) #24	Khdc4 (MGP_PahariEiJ_G0026621) #25	Rit1 (MGP_PahariEiJ_G0026622) #26	Syt11 (MGP_PahariEiJ_G0026623) #27	Gon4l (MGP_PahariEiJ_G0026624) #33	MGP_PahariEiJ_G0026625 #35	Dap3 (MGP_PahariEiJ_G0026626) #32	Ash1l (MGP_PahariEiJ_G0026627) #36	MGP_PahariEiJ_G0026628 #37	Rusc1 (MGP_PahariEiJ_G0026629) #37	Fdps (MGP_PahariEiJ_G0026630)	Pklr (MGP_PahariEiJ_G0026631)	Hcn3 (MGP_PahariEiJ_G0026632)	Clk2 (MGP_PahariEiJ_G0026633)
Rat	MODERN SPECIES	11	Rhbg (ENSRNOG00000019412)	Tsacc (ENSRNOG00000037552) #7	Cct3 (ENSRNOG00000019090) #8	Glmp (ENSRNOG00000019281) #10	Tmem79 (ENSRNOG00000019414) #11	Smg5 (ENSRNOG00000019590) #12	Paqr6 (ENSRNOG00000026059) #13	Bglap (ENSRNOG00000019607) #14	Pmf1 (ENSRNOG00000019620)	Slc25a44 (ENSRNOG00000025269) #16	Sema4a (ENSRNOG00000019737) #17	Lmna (ENSRNOG00000019638) #18	Mex3a (ENSRNOG00000058654) #19	Rab25 (ENSRNOG00000023640) #20	Lamtor2 (ENSRNOG00000019908) #21	Ubqln4 (ENSRNOG00000019933) #22	Ssr2 (ENSRNOG00000019940) #23	Arhgef2 (ENSRNOG00000020027) #24	Khdc4 (ENSRNOG00000020139) #25	Rit1 (ENSRNOG00000064584) #26	Syt11 (ENSRNOG00000020279) #27	Gon4l (ENSRNOG00000020297) #33	Msto1 (ENSRNOG00000020357) #35	Dap3 (ENSRNOG00000020373) #32	Ash1l (ENSRNOG00000020386) #36	Fdps (ENSRNOG00000043377) #37	Pklr (ENSRNOG00000020420)	Hcn3 (ENSRNOG00000020444)	Scamp3 (ENSRNOG00000020500)	Entrep3 (ENSRNOG00000020518)	Gba (ENSRNOG00000049281)
Upper Galilee mountains blind mole rat	MODERN SPECIES	497	Mef2d (ENSNGAG00000016036)	Rhbg (ENSNGAG00000019322)	Cct3 (ENSNGAG00000016875) #8	Glmp (ENSNGAG00000019347) #10	Tmem79 (ENSNGAG00000020294) #11	Smg5 (ENSNGAG00000020706) #12	Paqr6 (ENSNGAG00000000673) #13	ENSNGAG00000001625 #14	Pmf1 (ENSNGAG00000007750)	Slc25a44 (ENSNGAG00000010575) #16	Sema4a (ENSNGAG00000012750) #17	Lmna (ENSNGAG00000017368) #18	Mex3a (ENSNGAG00000019587) #19	Rab25 (ENSNGAG00000019999) #20	Lamtor2 (ENSNGAG00000020249) #21	Ubqln4 (ENSNGAG00000020831) #22	Ssr2 (ENSNGAG00000002859) #23	ENSNGAG00000009107 #24	ENSNGAG00000011350 #24	Khdc4 (ENSNGAG00000012421) #25	Rit1 (ENSNGAG00000013104) #26	Syt11 (ENSNGAG00000013529) #27	Gon4l (ENSNGAG00000020844) #33	Msto1 (ENSNGAG00000022769) #35	Dap3 (ENSNGAG00000014173) #32	Ash1l (ENSNGAG00000021986) #36	Rusc1 (ENSNGAG00000008260) #37	Pklr (ENSNGAG00000019876)	Hcn3 (ENSNGAG00000021908)	Clk2 (ENSNGAG00000022518)	Scamp3 (ENSNGAG00000001034)