Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000009426 #9	ENSGT00940000157816 #10	ENSGT01070000254034	ENSGT00940000159763 #12	ENSGT01030000234639.A.b.a.a #13	ENSGT01030000234639.A.b.a.b.b #14	ENSGT00930000151035.a #15	ENSGT00940000170720	ENSGT00390000005535 #16	ENSGT01060000248595.b.a.b.a #17	ENSGT00940000161379 #18	ENSGT00390000009663 #19	ENSGT00390000009899.a.d #20	ENSGT00940000156574.C #21	ENSGT00940000153377.B	ENSGT00940000156431 #22	ENSGT00950000182939.a.b.b #23	ENSGT00950000182881.a.b.a.b #24	ENSGT00390000003049 #25	ENSGT00940000162915 #26	ENSGT00530000063359.B #27	ENSGT00940000155904.e.b #28	ENSGT00390000001189.b #29	ENSGT00940000154816.a.a	ENSGT00940000162775	ENSGT00940000162875 #32	ENSGT01100000264273	ENSGT00390000010641 #33	ENSGT00940000162460 #34	ENSGT00940000159796 #35	ENSGT00940000160334
Sciuridae	ANCESTRAL SPECIES	22	ENSGT00390000009426 #9	ENSGT00940000157816 #10	ENSGT01070000254034	ENSGT00940000159763 #12	ENSGT01030000234639.A.b.a.a #13	ENSGT01030000234639.A.b.a.b.b #14	ENSGT00930000151035.a #15	ENSGT00940000170720	ENSGT00390000005535 #16	ENSGT01060000248595.b.a.b.a #17	ENSGT00940000161379 #18	ENSGT00390000009663 #19	ENSGT00390000009899.a.d #20	ENSGT00940000156574.C #21	ENSGT00940000153377.B	ENSGT00940000156431 #22	ENSGT00950000182939.a.b.b #23	ENSGT00950000182881.a.b.a.b #24	ENSGT00390000003049 #25	ENSGT00940000162915 #26	ENSGT00530000063359.B #27	ENSGT00940000155904.e.b #28	ENSGT00390000001189.b #29	ENSGT00940000154816.a.a	ENSGT00940000162775	ENSGT00940000162875 #32	ENSGT00390000010641 #33	ENSGT00940000162460 #34	ENSGT00940000159796 #35	ENSGT00940000160334	ENSGT00940000161522 #36
Marmotini	ANCESTRAL SPECIES	6	ENSGT00940000160601 #8	ENSGT00390000009426 #9	ENSGT00940000157816 #10	ENSGT01070000254034	ENSGT00940000159763 #12	ENSGT01030000234639.A.b.a.a #13	ENSGT01030000234639.A.b.a.b.b #14	ENSGT00930000151035.a #15	ENSGT00390000005535 #16	ENSGT01060000248595.b.a.b.a #17	ENSGT00940000161379 #18	ENSGT00390000009663 #19	ENSGT00390000009899.a.d #20	ENSGT00940000156574.C #21	ENSGT00940000153377.B	ENSGT00940000156431 #22	ENSGT00950000182939.a.b.b #23	ENSGT00950000182881.a.b.a.b #24	ENSGT00390000003049 #25	ENSGT00940000162915 #26	ENSGT00530000063359.B #27	ENSGT00940000155904.e.b #28	ENSGT00390000001189.b #29	ENSGT00940000154816.a.a	ENSGT00940000162775	ENSGT00940000162875 #32	ENSGT00390000010641 #33	ENSGT00940000162460 #34	ENSGT00940000159796 #35	ENSGT00940000160334	ENSGT00940000161522 #36
Alpin marmot	MODERN SPECIES	86	FGF4 (ENSMMMG00000003298) #7	FGF19 (ENSMMMG00000003282) #8	LTO1 (ENSMMMG00000003272) #9	ENSMMMG00000003262 #10	ENSMMMG00000003260 #11	TPCN2 (ENSMMMG00000001627) #12	MRGPRF (ENSMMMG00000001519) #13	MRGPRD (ENSMMMG00000001512) #14	IGHMBP2 (ENSMMMG00000001381) #15	MRPL21 (ENSMMMG00000001368) #16	CPT1A (ENSMMMG00000001336) #17	TESMIN (ENSMMMG00000001259) #18	GAL (ENSMMMG00000001246) #19	PPP6R3 (ENSMMMG00000001095) #20	LRP5 (ENSMMMG00000001048) #21	KMT5B (ENSMMMG00000000789) #22	CHKA (ENSMMMG00000000678) #23	ENSMMMG00000000378 #24	NDUFS8 (ENSMMMG00000000351) #25	ALDH3B1 (ENSMMMG00000000301) #26	UNC93B1 (ENSMMMG00000000216) #27	ALDH3B2 (ENSMMMG00000000185) #28	ACY3 (ENSMMMG00000000156) #29	ENSMMMG00000000133 #30	NUDT8 (ENSMMMG00000000113) #31	ENSMMMG00000000088 #32	NDUFV1 (ENSMMMG00000000065) #33	GSTP1 (ENSMMMG00000000041) #34	CABP2 (ENSMMMG00000000025) #35	PITPNM1 (ENSMMMG00000000005) #36	AIP (ENSMMMG00000022002) #37
Marmotini_b	ANCESTRAL SPECIES	19	ENSGT00940000160601 #8	ENSGT00390000009426 #9	ENSGT00940000157816 #10	ENSGT01070000254034	ENSGT00940000159763 #12	ENSGT01030000234639.A.b.a.a #13	ENSGT01030000234639.A.b.a.b.b #14	ENSGT00930000151035.a #15	ENSGT00390000005535 #16	ENSGT01060000248595.b.a.b.a #17	ENSGT00940000161379 #18	ENSGT00390000009663 #19	ENSGT00390000009899.a.d #20	ENSGT00940000156574.C #21	ENSGT00940000153377.B	ENSGT00940000156431 #22	ENSGT00950000182939.a.b.b #23	ENSGT00950000182881.a.b.a.b #24	ENSGT00390000003049 #25	ENSGT00940000162915 #26	ENSGT00530000063359.B #27	ENSGT00390000001189.b #29	ENSGT00940000154816.a.a	ENSGT00940000162775	ENSGT00940000162875 #32	ENSGT00390000010641 #33	ENSGT00940000162460 #34	ENSGT00940000159796 #35	ENSGT00940000160334	ENSGT00940000161522 #36	ENSGT00390000001289.a #37
Arctic ground squirrel	MODERN SPECIES	172			LTO1 (ENSUPAG00010007106) #9	CCND1 (ENSUPAG00010007111) #10	SMIM38 (ENSUPAG00010007115)	TPCN2 (ENSUPAG00010007118) #12	MRGPRF (ENSUPAG00010007158) #13	MRGPRD (ENSUPAG00010007168) #14	IGHMBP2 (ENSUPAG00010007174) #15	MRPL21 (ENSUPAG00010007189) #16	CPT1A (ENSUPAG00010007209) #17	ENSUPAG00010007325 #19	PPP6R3 (ENSUPAG00010007337) #20	LRP5 (ENSUPAG00010007453) #21	ENSUPAG00010007475	KMT5B (ENSUPAG00010007478) #22	CHKA (ENSUPAG00010007654) #23	TCIRG1 (ENSUPAG00010007691) #24	NDUFS8 (ENSUPAG00010007713) #25	ALDH3B1 (ENSUPAG00010007728) #26	UNC93B1 (ENSUPAG00010007746) #27	ACY3 (ENSUPAG00010007756) #29	ENSUPAG00010007771 #30	ENSUPAG00010007775	ENSUPAG00010007785 #32	NDUFV1 (ENSUPAG00010007803) #33	GSTP1 (ENSUPAG00010007817) #34	CABP2 (ENSUPAG00010007845) #35	CDK2AP2 (ENSUPAG00010007891)	PITPNM1 (ENSUPAG00010007905) #36	AIP (ENSUPAG00010007946) #37
Squirrel	MODERN SPECIES	199	FGF3 (ENSSTOG00000023034)	ENSSTOG00000019792 #7	FGF19 (ENSSTOG00000021758) #8	LTO1 (ENSSTOG00000028728) #9	CCND1 (ENSSTOG00000000408) #10	TPCN2 (ENSSTOG00000012097) #12	MRGPRF (ENSSTOG00000010947) #13	IGHMBP2 (ENSSTOG00000003792) #15	MRPL21 (ENSSTOG00000032759) #16	CPT1A (ENSSTOG00000012856) #17	TESMIN (ENSSTOG00000012841) #18	GAL (ENSSTOG00000019759) #19	PPP6R3 (ENSSTOG00000005109) #20	LRP5 (ENSSTOG00000012285) #21	ENSSTOG00000012277	KMT5B (ENSSTOG00000024331) #22	ENSSTOG00000019647	CHKA (ENSSTOG00000011503) #23	TCIRG1 (ENSSTOG00000024529) #24	NDUFS8 (ENSSTOG00000011500) #25	ALDH3B1 (ENSSTOG00000015155) #26	UNC93B1 (ENSSTOG00000011497) #27	ACY3 (ENSSTOG00000015148) #29	TBX10 (ENSSTOG00000011629)	ENSSTOG00000024208	ENSSTOG00000021128 #32	NDUFV1 (ENSSTOG00000005850) #33	GSTP1 (ENSSTOG00000025905) #34	CABP2 (ENSSTOG00000014876) #35	CDK2AP2 (ENSSTOG00000024042)	PITPNM1 (ENSSTOG00000027855) #36
Eurasian red squirrel	MODERN SPECIES	2	LTO1 (ENSSVLG00005023000) #9	CCND1 (ENSSVLG00005023090) #10	ENSSVLG00005023121	TPCN2 (ENSSVLG00005023184) #12	MRGPRF (ENSSVLG00005023569) #13	MRGPRD (ENSSVLG00005023594) #14	ENSSVLG00005023620 #15	ENSSVLG00005023637	MRPL21 (ENSSVLG00005023646) #16	CPT1A (ENSSVLG00005023707) #17	TESMIN (ENSSVLG00005023772) #18	GAL (ENSSVLG00005023853) #19	ENSSVLG00005024045 #20	LRP5 (ENSSVLG00005024864) #21	ENSSVLG00005024875	ENSSVLG00005024928 #22	ENSSVLG00005024959	CHKA (ENSSVLG00005025020) #23	ENSSVLG00005025068 #24	ENSSVLG00005025100 #24	NDUFS8 (ENSSVLG00005025114) #25	ALDH3B1 (ENSSVLG00005025147) #26	UNC93B1 (ENSSVLG00005025215) #27	ALDH3B2 (ENSSVLG00005025242) #28	ACY3 (ENSSVLG00005025257) #29	TBX10 (ENSSVLG00005025280)	ENSSVLG00005025291	ENSSVLG00005025305 #32	NDUFV1 (ENSSVLG00005025325) #33	GSTP1 (ENSSVLG00005025366) #34	CABP2 (ENSSVLG00005025399) #35
Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00940000160601 #8	ENSGT00390000009426 #9	ENSGT00940000157816 #10	ENSGT01070000254034	ENSGT00940000159763 #12	ENSGT01030000234639.A.b.a.a #13	ENSGT01030000234639.A.b.a.b.b #14	ENSGT00930000151035.a #15	ENSGT00390000005535 #16	ENSGT01060000248595.b.a.b.a #17	ENSGT00940000161379 #18	ENSGT00390000009663 #19	ENSGT00390000009899.a.d #20	ENSGT00940000156574.C #21	ENSGT00940000153377.B	ENSGT00940000156431 #22	ENSGT00950000182939.a.b.b #23	ENSGT00950000182881.a.b.a.b #24	ENSGT00390000003049 #25	ENSGT00940000162915 #26	ENSGT00530000063359.B #27	ENSGT00940000155904.e.b #28	ENSGT00390000001189.b #29	ENSGT00940000154816.a.a	ENSGT00940000162775	ENSGT00940000162875 #32	ENSGT01100000264273	ENSGT00390000010641 #33	ENSGT00940000162460 #34	ENSGT00940000159796 #35	ENSGT00940000160334
Naked mole-rat female	MODERN SPECIES	14	ORAOV1 (ENSHGLG00000041285) #9	CCND1 (ENSHGLG00000039478) #10	SMIM38 (ENSHGLG00000042963)	TPCN2 (ENSHGLG00000009786) #12	MRGPRF (ENSHGLG00000042564) #13	MRGPRD (ENSHGLG00000033970) #14	IGHMBP2 (ENSHGLG00000006468) #15	MRPL21 (ENSHGLG00000007657) #16	ENSHGLG00000041256	CPT1A (ENSHGLG00000009799) #17	TESMIN (ENSHGLG00000006844) #18	GAL (ENSHGLG00000013095) #19	ENSHGLG00000010435 #20	LRP5 (ENSHGLG00000012372) #21	C11orf24 (ENSHGLG00000018642)	KMT5B (ENSHGLG00000014467) #22	CHKA (ENSHGLG00000014648) #23	TCIRG1 (ENSHGLG00000018395) #24	NDUFS8 (ENSHGLG00000009570) #25	ALDH3B1 (ENSHGLG00000015602) #26	UNC93B1 (ENSHGLG00000011769) #27	ALDH3B2 (ENSHGLG00000010052) #28	ACY3 (ENSHGLG00000015831) #29	TBX10 (ENSHGLG00000015945)	NUDT8 (ENSHGLG00000047808) #31	ENSHGLG00000018636 #32	ENSHGLG00000048694	NDUFV1 (ENSHGLG00000042428) #33	GSTP1 (ENSHGLG00000018697) #34	ENSHGLG00000043193	ENSHGLG00000011960
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00940000158825 #7	ENSGT00940000160601 #8	ENSGT00390000009426 #9	ENSGT00940000157816 #10	ENSGT00940000159763 #12	ENSGT01030000234639.A.b.a.a #13	ENSGT01030000234639.A.b.a.b.b #14	ENSGT00930000151035.a #15	ENSGT00390000005535 #16	ENSGT01060000248595.b.a.b.a #17	ENSGT00940000161379 #18	ENSGT00390000009663 #19	ENSGT00390000009899.a.d #20	ENSGT00940000156574.C #21	ENSGT00940000153377.B	ENSGT00940000156431 #22	ENSGT00950000182939.a.b.b #23	ENSGT00950000182881.a.b.a.b #24	ENSGT00390000003049 #25	ENSGT00940000162915 #26	ENSGT00530000063359.B #27	ENSGT00940000155904.e.b #28	ENSGT00390000001189.b #29	ENSGT00940000154816.a.a	ENSGT00940000162775	ENSGT00940000162875 #32	ENSGT00390000010641 #33	ENSGT00940000162460 #34	ENSGT00940000159796 #35	ENSGT00940000160334	ENSGT00940000161522 #36
Guinea pig	MODERN SPECIES	42	FGF4 (ENSCPOG00000013920) #7	FGF19 (ENSCPOG00000008147) #8	LTO1 (ENSCPOG00000031028) #9	CCND1 (ENSCPOG00000032886) #10	TPCN2 (ENSCPOG00000002580) #12	MRGPRF (ENSCPOG00000033803) #13	MRGPRD (ENSCPOG00000025266) #14	IGHMBP2 (ENSCPOG00000007063) #15	MRPL21 (ENSCPOG00000038509) #16	CPT1A (ENSCPOG00000004344) #17	TESMIN (ENSCPOG00000032989) #18	GAL (ENSCPOG00000004337) #19	PPP6R3 (ENSCPOG00000007353) #20	LRP5 (ENSCPOG00000008119) #21	ENSCPOG00000000621	KMT5B (ENSCPOG00000002147) #22	CHKA (ENSCPOG00000022236) #23	TCIRG1 (ENSCPOG00000001417) #24	NDUFS8 (ENSCPOG00000001416) #25	ALDH3B1 (ENSCPOG00000021502) #26	UNC93B1 (ENSCPOG00000026431) #27	ALDH3B2 (ENSCPOG00000002523) #28	ACY3 (ENSCPOG00000002519) #29	TBX10 (ENSCPOG00000032079)	ENSCPOG00000002514	ENSCPOG00000022649 #32	NDUFV1 (ENSCPOG00000006645) #33	GSTP1 (ENSCPOG00000020253) #34	CABP2 (ENSCPOG00000023151) #35	CDK2AP2 (ENSCPOG00000033165)	PITPNM1 (ENSCPOG00000011204) #36
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000158825 #7	ENSGT00940000160601 #8	ENSGT00390000009426 #9	ENSGT00940000157816 #10	ENSGT00940000159763 #12	ENSGT01030000234639.A.b.a.a #13	ENSGT01030000234639.A.b.a.b.b #14	ENSGT00930000151035.a #15	ENSGT00390000005535 #16	ENSGT01060000248595.b.a.b.a #17	ENSGT00940000161379 #18	ENSGT00390000009663 #19	ENSGT00390000009899.a.d #20	ENSGT00940000156574.C #21	ENSGT00940000153377.B	ENSGT00940000156431 #22	ENSGT00950000182939.a.b.b #23	ENSGT00950000182881.a.b.a.b #24	ENSGT00390000003049 #25	ENSGT00940000162915 #26	ENSGT00530000063359.B #27	ENSGT00940000155904.e.b #28	ENSGT00390000001189.b #29	ENSGT00940000154816.a.a	ENSGT00940000162775	ENSGT00940000162875 #32	ENSGT00390000010641 #33	ENSGT00940000162460 #34	ENSGT00940000159796 #35	ENSGT00940000160334	ENSGT00940000161522 #36
Long-tailed chinchilla	MODERN SPECIES	129	ENSCLAG00000014848 #7	FGF19 (ENSCLAG00000015041) #8	LTO1 (ENSCLAG00000014111) #9	CCND1 (ENSCLAG00000014981) #10	TPCN2 (ENSCLAG00000016178) #12	MRGPRF (ENSCLAG00000016323) #13	MRGPRD (ENSCLAG00000016417) #14	IGHMBP2 (ENSCLAG00000015500) #15	MRPL21 (ENSCLAG00000016038) #16	CPT1A (ENSCLAG00000016594) #17	TESMIN (ENSCLAG00000015628) #18	GAL (ENSCLAG00000016374) #19	PPP6R3 (ENSCLAG00000015508) #20	LRP5 (ENSCLAG00000016254) #21	ENSCLAG00000017122	KMT5B (ENSCLAG00000016628) #22	CHKA (ENSCLAG00000014223) #23	TCIRG1 (ENSCLAG00000014792) #24	NDUFS8 (ENSCLAG00000017156) #25	ALDH3B1 (ENSCLAG00000016029) #26	UNC93B1 (ENSCLAG00000016729) #27	ALDH3B2 (ENSCLAG00000017296) #28	ACY3 (ENSCLAG00000016314) #29	TBX10 (ENSCLAG00000015667)	ENSCLAG00000016240	ENSCLAG00000016785 #32	NDUFV1 (ENSCLAG00000016746) #33	GSTP1 (ENSCLAG00000015548) #34	CABP2 (ENSCLAG00000015734) #35	CDK2AP2 (ENSCLAG00000014787)	ENSCLAG00000015015 #36
Degu	MODERN SPECIES	59	CCND1 (ENSODEG00000017314) #10	TPCN2 (ENSODEG00000017370) #12	ENSODEG00000017365	ENSODEG00000017628	MRGPRF (ENSODEG00000017539) #13	MRGPRD (ENSODEG00000017313) #14	IGHMBP2 (ENSODEG00000017354) #15	MRPL21 (ENSODEG00000017369) #16	CPT1A (ENSODEG00000017481) #17	TESMIN (ENSODEG00000017728) #18	GAL (ENSODEG00000017519) #19	PPP6R3 (ENSODEG00000017311) #20	ENSODEG00000020451	LRP5 (ENSODEG00000017493) #21	C11orf24 (ENSODEG00000017396)	ENSODEG00000017460 #22	CHKA (ENSODEG00000017808) #23	TCIRG1 (ENSODEG00000017607) #24	ENSODEG00000017577 #25	ALDH3B1 (ENSODEG00000017474) #26	UNC93B1 (ENSODEG00000017652) #27	ENSODEG00000017464	ALDH3B2 (ENSODEG00000017453) #28	ACY3 (ENSODEG00000017439) #29	TBX10 (ENSODEG00000017601)	ENSODEG00000017697	ENSODEG00000017660 #32	NDUFV1 (ENSODEG00000017535) #33	ENSODEG00000017726 #34	CABP2 (ENSODEG00000017525) #35	CDK2AP2 (ENSODEG00000017482)