Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00730000110872.a	ENSGT00940000159526 #7	ENSGT00950000183171.A.b.a.a #8	ENSGT00940000158321 #9	ENSGT00390000015280 #10	ENSGT00530000065159	ENSGT00940000158562 #11	ENSGT00940000158733 #12	ENSGT00390000006243 #13	ENSGT00940000156571 #15	ENSGT00940000155967 #16	ENSGT00510000047710 #18	ENSGT00940000161622 #19	ENSGT00940000153725.b #20	ENSGT00950000182909.a	ENSGT00940000154484.B.a.a #22	ENSGT00390000014071 #27	ENSGT00940000163637	ENSGT00950000183142.a.a #29	ENSGT00940000155570 #30	ENSGT00940000155496.b #34	ENSGT00390000008903	ENSGT00390000002743 #36	ENSGT00390000009065 #37	ENSGT01050000244838.H.c	ENSGT00950000182976.b.b	ENSGT00510000051272	ENSGT01030000234840	ENSGT00940000155674	ENSGT00900000143365	ENSGT00940000157368
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00730000110872.a	ENSGT00940000159526 #7	ENSGT00950000183171.A.b.a.a #8	ENSGT00940000158321 #9	ENSGT00390000015280 #10	ENSGT00530000065159	ENSGT00940000158562 #11	ENSGT00940000158733 #12	ENSGT00390000006243 #13	ENSGT00940000156571 #15	ENSGT00940000155967 #16	ENSGT00510000047710 #18	ENSGT00940000161622 #19	ENSGT00940000153725.b #20	ENSGT00950000182909.a	ENSGT00940000154484.B.a.a #22	ENSGT00390000014071 #27	ENSGT00950000183142.a.a #29	ENSGT00940000155570 #30	ENSGT00940000155496.b #34	ENSGT00390000008903	ENSGT00390000002743 #36	ENSGT00390000009065 #37	ENSGT01050000244838.H.c	ENSGT00950000182976.b.b	ENSGT01030000234840	ENSGT00940000155674	ENSGT00940000157368	ENSGT00390000011255	ENSGT00940000158739	ENSGT00940000162627
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000156399	ENSGT00730000110872.a	ENSGT00940000159526 #7	ENSGT00950000183171.A.b.a.a #8	ENSGT00940000158321 #9	ENSGT00390000015280 #10	ENSGT00940000158562 #11	ENSGT00940000158733 #12	ENSGT00390000006243 #13	ENSGT00940000156571 #15	ENSGT00940000155967 #16	ENSGT00510000047710 #18	ENSGT00940000161622 #19	ENSGT00940000153725.b #20	ENSGT00950000182909.a	ENSGT00940000154484.B.a.a #22	ENSGT00390000014071 #27	ENSGT00950000183142.a.a #29	ENSGT00940000155570 #30	ENSGT00940000155496.b #34	ENSGT00390000008903	ENSGT00390000002743 #36	ENSGT00390000009065 #37	ENSGT01050000244838.H.c	ENSGT00950000182976.b.b	ENSGT01030000234840	ENSGT00940000155674	ENSGT00940000157368	ENSGT00940000158739	ENSGT00940000162627	ENSGT00420000029753.a.l
Hystricomorpha_b	ANCESTRAL SPECIES	68	ENSGT00940000156399	ENSGT00730000110872.a	ENSGT00940000159526 #7	ENSGT00950000183171.A.b.a.a #8	ENSGT00940000158321 #9	ENSGT00390000015280 #10	ENSGT00940000158562 #11	ENSGT00940000158733 #12	ENSGT00390000006243 #13	ENSGT00940000156571 #15	ENSGT00940000155967 #16	ENSGT00510000047710 #18	ENSGT00940000161622 #19	ENSGT00940000153725.b #20	ENSGT00950000182909.a	ENSGT00940000154484.B.a.a #22	ENSGT00390000014071 #27	ENSGT00950000183142.a.a #29	ENSGT00940000155570 #30	ENSGT00940000155496.b #34	ENSGT00390000008903	ENSGT00390000002743 #36	ENSGT00390000009065 #37	ENSGT01050000244838.H.c	ENSGT00950000182976.b.b	ENSGT00940000155674	ENSGT00940000157368	ENSGT00940000158739	ENSGT00940000162627	ENSGT00420000029753.a.l	ENSGT01030000234573.A.b.b.b
Degu	MODERN SPECIES	42	ERBIN (ENSODEG00000016275) #7	NLN (ENSODEG00000016710) #8	ENSODEG00000017310 #9	TRAPPC13 (ENSODEG00000016684) #10	TRIM23 (ENSODEG00000016997) #11	PPWD1 (ENSODEG00000016437) #12	ENSODEG00000016993 #13	ENSODEG00000016266 #14	ADAMTS6 (ENSODEG00000016583) #15	ENSODEG00000017174 #16	ENSODEG00000016422 #17	SREK1IP1 (ENSODEG00000016833) #18	SHISAL2B (ENSODEG00000016823) #19	RGS7BP (ENSODEG00000016411) #20	ENSODEG00000016704 #21	HTR1A (ENSODEG00000020427) #22	ENSODEG00000016461 #23	ENSODEG00000020425 #24	ENSODEG00000017157 #25	ENSODEG00000020362 #26	IPO11 (ENSODEG00000017269) #27	ENSODEG00000016524 #28	DIMT1 (ENSODEG00000016626) #29	KIF2A (ENSODEG00000016553) #30	ENSODEG00000020469 #31	ENSODEG00000020416 #32	ENSODEG00000016595 #33	ZSWIM6 (ENSODEG00000016625) #34	ENSODEG00000020436 #35	NDUFAF2 (ENSODEG00000016635) #36	ERCC8 (ENSODEG00000016868) #37
Long-tailed chinchilla	MODERN SPECIES	153	ENSCLAG00000004960	SREK1 (ENSCLAG00000005024)	ERBIN (ENSCLAG00000005383) #7	NLN (ENSCLAG00000006158) #8	ENSCLAG00000006334 #9	TRAPPC13 (ENSCLAG00000006438) #10	TRIM23 (ENSCLAG00000006665) #11	PPWD1 (ENSCLAG00000006772) #12	CENPK (ENSCLAG00000003322) #13	ADAMTS6 (ENSCLAG00000003412) #15	CWC27 (ENSCLAG00000003527) #16	SREK1IP1 (ENSCLAG00000003592) #18	SHISAL2B (ENSCLAG00000003624) #19	RGS7BP (ENSCLAG00000003654) #20	RNF180 (ENSCLAG00000003716)	HTR1A (ENSCLAG00000017556) #22	ENSCLAG00000003797	IPO11 (ENSCLAG00000003889) #27	ENSCLAG00000003958	DIMT1 (ENSCLAG00000004032) #29	KIF2A (ENSCLAG00000004123) #30	ZSWIM6 (ENSCLAG00000004297) #34	SMIM15 (ENSCLAG00000004397)	NDUFAF2 (ENSCLAG00000004493) #36	ERCC8 (ENSCLAG00000004884) #37	ELOVL7 (ENSCLAG00000005072)	DEPDC1B (ENSCLAG00000005223)	PDE4D (ENSCLAG00000006363)	RAB3C (ENSCLAG00000007246)	PLK2 (ENSCLAG00000007849)	ACTBL2 (ENSCLAG00000017702)
Guinea pig	MODERN SPECIES	124															RNF180 (ENSCPOG00000009620)	HTR1A (ENSCPOG00000036945) #22	IPO11 (ENSCPOG00000009412) #27	DIMT1 (ENSCPOG00000009403) #29	KIF2A (ENSCPOG00000009393) #30	ZSWIM6 (ENSCPOG00000002071) #34	NDUFAF2 (ENSCPOG00000033421) #36	SMIM15 (ENSCPOG00000031620)	ENSCPOG00000004642 #37	ENSCPOG00000015124
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000003825	SGTB (ENSHGLG00000037411) #9	TRAPPC13 (ENSHGLG00000005655) #10	ENSHGLG00000042946	TRIM23 (ENSHGLG00000003094) #11	PPWD1 (ENSHGLG00000003364) #12	CENPK (ENSHGLG00000003837) #13	ADAMTS6 (ENSHGLG00000005305) #15	ENSHGLG00000004796	CWC27 (ENSHGLG00000005297) #16	ENSHGLG00000046176 #18	ENSHGLG00000008725 #19	RGS7BP (ENSHGLG00000009409) #20	RNF180 (ENSHGLG00000007622)	ENSHGLG00000042489	ENSHGLG00000008662 #22	ENSHGLG00000043284	ENSHGLG00000038309	ENSHGLG00000038602	ENSHGLG00000001855	ENSHGLG00000047453	ENSHGLG00000002375 #27	DIMT1 (ENSHGLG00000002611) #29	ENSHGLG00000002012 #30	ZSWIM6 (ENSHGLG00000003187) #34	ENSHGLG00000019502	NDUFAF2 (ENSHGLG00000049827) #36	ENSHGLG00000019517 #37	ELOVL7 (ENSHGLG00000041515)	DEPDC1B (ENSHGLG00000019523)	PDE4D (ENSHGLG00000007099)
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00940000156399	ENSGT00730000110872.a	ENSGT00940000159526 #7	ENSGT00950000183171.A.b.a.a #8	ENSGT00940000158321 #9	ENSGT00390000015280 #10	ENSGT00940000158562 #11	ENSGT00940000158733 #12	ENSGT00390000006243 #13	ENSGT00940000156571 #15	ENSGT00940000155967 #16	ENSGT00510000047710 #18	ENSGT00940000161622 #19	ENSGT00940000153725.b #20	ENSGT00950000182909.a	ENSGT00940000154484.B.a.a #22	ENSGT00390000014071 #27	ENSGT00940000163637	ENSGT00950000183142.a.a #29	ENSGT00940000155570 #30	ENSGT00940000155496.b #34	ENSGT00390000008903.db.a	ENSGT00390000002743 #36	ENSGT00390000009065 #37	ENSGT01050000244838.H.c	ENSGT00950000182976.b.b	ENSGT00510000051272	ENSGT01030000234840	ENSGT00940000155674	ENSGT00900000143365	ENSGT00940000157368
Marmotini	ANCESTRAL SPECIES	54	ENSGT00940000156399	ENSGT00730000110872.a	ENSGT00940000159526 #7	ENSGT00950000183171.A.b.a.a #8	ENSGT00940000158321 #9	ENSGT00390000015280 #10	ENSGT00940000158562 #11	ENSGT00940000158733 #12	ENSGT00390000006243 #13	ENSGT00940000156571 #15	ENSGT00940000155967 #16	ENSGT00510000047710 #18	ENSGT00940000161622 #19	ENSGT00940000153725.b #20	ENSGT00950000182909.a	ENSGT00940000154484.B.a.a #22	ENSGT00390000014071 #27	ENSGT00950000183142.a.a #29	ENSGT00940000155570 #30	ENSGT00390000017673.b.h	ENSGT00940000155496.b #34	ENSGT00390000001455.eb.a	ENSGT00390000008903.db.a	ENSGT00390000002743 #36	ENSGT00390000009065 #37	ENSGT01050000244838.H.c	ENSGT00950000182976.b.b	ENSGT00510000051272	ENSGT01030000234840	ENSGT00940000155674	ENSGT00900000143365
Marmotini_b	ANCESTRAL SPECIES	55	ENSGT00940000156399	ENSGT00730000110872.a	ENSGT00940000159526 #7	ENSGT00950000183171.A.b.a.a #8	ENSGT00940000158321 #9	ENSGT00390000015280 #10	ENSGT00940000158562 #11	ENSGT00940000158733 #12	ENSGT00390000006243 #13	ENSGT00940000156571 #15	ENSGT00940000155967 #16	ENSGT00510000047710 #18	ENSGT00940000161622 #19	ENSGT00940000153725.b #20	ENSGT00950000182909.a	ENSGT00940000154484.B.a.a #22	ENSGT00390000014071 #27	ENSGT00950000183142.a.a #29	ENSGT00940000155570 #30	ENSGT00390000017673.b.h	ENSGT00940000155496.b #34	ENSGT00390000001455.eb.a	ENSGT00390000008903.db.a	ENSGT00390000002743 #36	ENSGT00390000009065 #37	ENSGT01050000244838.H.c	ENSGT00950000182976.b.b	ENSGT00510000051272	ENSGT01030000234840	ENSGT00940000155674	ENSGT00940000157368
Squirrel	MODERN SPECIES	80	SREK1 (ENSSTOG00000008850)	ERBIN (ENSSTOG00000003444) #7	NLN (ENSSTOG00000027725) #8	SGTB (ENSSTOG00000027794) #9	TRAPPC13 (ENSSTOG00000021318) #10	TRIM23 (ENSSTOG00000004661) #11	PPWD1 (ENSSTOG00000004645) #12	CENPK (ENSSTOG00000004630) #13	ADAMTS6 (ENSSTOG00000001232) #15	CWC27 (ENSSTOG00000000191) #16	SREK1IP1 (ENSSTOG00000032449) #18	SHISAL2B (ENSSTOG00000000188) #19	RGS7BP (ENSSTOG00000008831) #20	ENSSTOG00000025452	RNF180 (ENSSTOG00000012278)	HTR1A (ENSSTOG00000028122) #22	IPO11 (ENSSTOG00000006070) #27	ENSSTOG00000033386	DIMT1 (ENSSTOG00000012731) #29	KIF2A (ENSSTOG00000012710) #30	ENSSTOG00000022617	ZSWIM6 (ENSSTOG00000027393) #34	ENSSTOG00000033886	SMIM15 (ENSSTOG00000033191)	NDUFAF2 (ENSSTOG00000005330) #36	ERCC8 (ENSSTOG00000005308) #37	ELOVL7 (ENSSTOG00000005290)	DEPDC1B (ENSSTOG00000022557)	PDE4D (ENSSTOG00000024554)	ENSSTOG00000030888	RAB3C (ENSSTOG00000005011)
Arctic ground squirrel	MODERN SPECIES	81	ENSUPAG00010020848	ERBIN (ENSUPAG00010019927) #7	NLN (ENSUPAG00010019910) #8	SGTB (ENSUPAG00010019906) #9	TRAPPC13 (ENSUPAG00010019866) #10	TRIM23 (ENSUPAG00010019824) #11	PPWD1 (ENSUPAG00010019815) #12	CENPK (ENSUPAG00010019808) #13	ADAMTS6 (ENSUPAG00010019775) #15	CWC27 (ENSUPAG00010019767) #16	SREK1IP1 (ENSUPAG00010019763) #18	SHISAL2B (ENSUPAG00010019757) #19	RGS7BP (ENSUPAG00010019751) #20	ENSUPAG00010019741	RNF180 (ENSUPAG00010019724)	HTR1A (ENSUPAG00010019721) #22
Alpin marmot	MODERN SPECIES	10	ENSMMMG00000000711	NLN (ENSMMMG00000001851) #8	SGTB (ENSMMMG00000001906) #9	TRAPPC13 (ENSMMMG00000001934) #10	TRIM23 (ENSMMMG00000002114) #11	PPWD1 (ENSMMMG00000002176) #12	CENPK (ENSMMMG00000002216) #13	ADAMTS6 (ENSMMMG00000002260) #15	CWC27 (ENSMMMG00000002333) #16	SREK1IP1 (ENSMMMG00000002364) #18	SHISAL2B (ENSMMMG00000002373) #19	ENSMMMG00000002385	RGS7BP (ENSMMMG00000002390) #20	ENSMMMG00000002409	RNF180 (ENSMMMG00000002429)	HTR1A (ENSMMMG00000002451) #22	ENSMMMG00000002459	SERPINB8 (ENSMMMG00000002464)	SERPINB10 (ENSMMMG00000002470)	SERPINB2 (ENSMMMG00000002481)	SERPINB7 (ENSMMMG00000002501)	SERPINB11 (ENSMMMG00000002520)	ENSMMMG00000002538	SERPINB13 (ENSMMMG00000002577)	SERPINB12 (ENSMMMG00000002596)	SERPINB5 (ENSMMMG00000002637)	VPS4B (ENSMMMG00000002671)	KDSR (ENSMMMG00000002692)	BCL2 (ENSMMMG00000002828)	PHLPP1 (ENSMMMG00000002855)	ZCCHC2 (ENSMMMG00000003092)
Eurasian red squirrel	MODERN SPECIES	15	SREK1 (ENSSVLG00005012169)	ERBIN (ENSSVLG00005012390) #7	NLN (ENSSVLG00005012726) #8	ENSSVLG00005012778	SGTB (ENSSVLG00005012822) #9	TRAPPC13 (ENSSVLG00005004304) #10	TRIM23 (ENSSVLG00005004375) #11	PPWD1 (ENSSVLG00005004415) #12	CENPK (ENSSVLG00005004475) #13	ADAMTS6 (ENSSVLG00005004515) #15	CWC27 (ENSSVLG00005004548) #16	SREK1IP1 (ENSSVLG00005004571) #18	SHISAL2B (ENSSVLG00005004593) #19	RGS7BP (ENSSVLG00005004610) #20	RNF180 (ENSSVLG00005004632)	HTR1A (ENSSVLG00005004657) #22	IPO11 (ENSSVLG00005004692) #27	ENSSVLG00005004755	DIMT1 (ENSSVLG00005004780) #29	KIF2A (ENSSVLG00005004912) #30	ZSWIM6 (ENSSVLG00005005212) #34	ENSSVLG00005005269	ENSSVLG00005005285	NDUFAF2 (ENSSVLG00005005295) #36	ERCC8 (ENSSVLG00005005313) #37	ELOVL7 (ENSSVLG00005005357)	ENSSVLG00005005400	DEPDC1B (ENSSVLG00005005445)	PDE4D (ENSSVLG00005005695)	ENSSVLG00005006055	RAB3C (ENSSVLG00005006067)