Mus	ANCESTRAL SPECIES	15	ENSGT00940000159378	ENSGT00940000159406	ENSGT00940000158924	ENSGT00940000153441.a.b	ENSGT00940000161556 #11	ENSGT00390000017595.e ##12	ENSGT00390000017595.f #12	ENSGT00940000157720 #13	ENSGT00940000155595 #14	ENSGT00780000122010 #15	ENSGT00940000157520 #16	ENSGT00940000158935 #17	ENSGT00530000063672.a #18	ENSGT00520000055589.c #19	ENSGT00940000155901.b #21	ENSGT00940000155043 #22	ENSGT00390000013819 #23	ENSGT00390000000885 #24	ENSGT00950000183064.a.b.b #25	ENSGT00860000136293 #26	ENSGT00390000003100 #27	ENSGT00950000182787.B #28	ENSGT00950000182787.A #29	ENSGT00940000155512 #30	ENSGT00940000157973 #31	ENSGT00940000163077 #33	ENSGT00940000154340.B	ENSGT00940000154865 #34	ENSGT00940000158120 #35	ENSGT00390000004582 #36	ENSGT00390000014627 #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000159378	ENSGT00940000159406	ENSGT00940000158924	ENSGT00940000153441.a.b	ENSGT00940000161556 #11	ENSGT00390000017595.e ##12	ENSGT00390000017595.f #12	ENSGT00940000157720 #13	ENSGT00940000155595 #14	ENSGT00780000122010 #15	ENSGT00940000157520 #16	ENSGT00940000158935 #17	ENSGT00530000063672.a #18	ENSGT00520000055589.c #19	ENSGT00940000155901.b #21	ENSGT00940000155043 #22	ENSGT00390000013819 #23	ENSGT00390000000885 #24	ENSGT00950000183064.a.b.b #25	ENSGT00860000136293 #26	ENSGT00390000003100 #27	ENSGT00950000182787.B #28	ENSGT00950000182787.A #29	ENSGT00940000155512 #30	ENSGT00940000157973 #31	ENSGT00940000163077 #33	ENSGT00940000170705 #32	ENSGT00940000154865 #34	ENSGT00940000158120 #35	ENSGT00390000004582 #36	ENSGT00390000014627 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000159378	ENSGT00940000159406	ENSGT00940000158924	ENSGT00940000153441.a.b	ENSGT00940000161556 #11	ENSGT00390000017595.e ##12	ENSGT00390000017595.f #12	ENSGT00940000157720 #13	ENSGT00940000155595 #14	ENSGT00780000122010 #15	ENSGT00940000157520 #16	ENSGT00940000158935 #17	ENSGT00530000063672.a #18	ENSGT00520000055589.c #19	ENSGT00940000155901.b #21	ENSGT00940000155043 #22	ENSGT00390000013819 #23	ENSGT00390000000885 #24	ENSGT00950000183064.a.b.b #25	ENSGT00860000136293 #26	ENSGT00390000003100 #27	ENSGT00950000182787.B #28	ENSGT00950000182787.A #29	ENSGT00940000155512 #30	ENSGT00940000157973 #31	ENSGT00940000163077 #33	ENSGT00940000170705 #32	ENSGT00940000154865 #34	ENSGT00940000158120 #35	ENSGT00390000004582 #36	ENSGT00390000014627 #37
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000155481.q.a	ENSGT00940000159378	ENSGT00940000159406	ENSGT00940000158924	ENSGT00940000153441.a.b	ENSGT00940000161556 #11	ENSGT00390000017595.f #12	ENSGT00940000157720 #13	ENSGT00940000155595 #14	ENSGT00780000122010 #15	ENSGT00940000157520 #16	ENSGT00940000158935 #17	ENSGT00530000063672.a #18	ENSGT00520000055589.c #19	ENSGT00940000155901.b #21	ENSGT00940000155043 #22	ENSGT00390000013819 #23	ENSGT00390000000885 #24	ENSGT00950000183064.a.b.b #25	ENSGT00860000136293 #26	ENSGT00390000003100 #27	ENSGT00950000182787.B #28	ENSGT00950000182787.A #29	ENSGT00940000155512 #30	ENSGT00940000157973 #31	ENSGT00940000163077 #33	ENSGT00940000170705 #32	ENSGT00940000154865 #34	ENSGT00940000158120 #35	ENSGT00390000004582 #36	ENSGT00390000014627 #37
Steppe mouse	MODERN SPECIES	3004					Atoh7 (ENSMSIG00000030353) #11	Pbld2 (ENSMSIG00000030356) #12	Hnrnph3 (ENSMSIG00000030369) #13	Rufy2 (ENSMSIG00000030370) #14	Dna2 (ENSMSIG00000030392) #15	ENSMSIG00000030401 #16	Tet1 (ENSMSIG00000030409) #17	Ccar1 (ENSMSIG00000030418) #18	Stox1 (ENSMSIG00000030438) #19	ENSMSIG00000030440 #20	Ddx50 (ENSMSIG00000030443) #21	Ddx21 (ENSMSIG00000030447) #22	Kifbp (ENSMSIG00000030449) #23	Srgn (ENSMSIG00000030457) #24	Vps26a (ENSMSIG00000030469) #25	ENSMSIG00000030471 #26	Supv3l1 (ENSMSIG00000030472) #27	Hkdc1 (ENSMSIG00000030475) #28	Hk1 (ENSMSIG00000030482) #29	Tacr2 (ENSMSIG00000030536) #30	Tspan15 (ENSMSIG00000030540) #31	Fam241b (ENSMSIG00000030548) #32	Neurog3 (ENSMSIG00000030554) #33	Col13a1 (ENSMSIG00000030555) #34	ENSMSIG00000030618 #35	Aifm2 (ENSMSIG00000030621) #36	Tysnd1 (ENSMSIG00000030627) #37
spretus	MODERN SPECIES	1	Ctnna3 (MGP_SPRETEiJ_G0016215)	Rnf7l (MGP_SPRETEiJ_G0016214)	Dnajc12 (MGP_SPRETEiJ_G0016213)	Sirt1 (MGP_SPRETEiJ_G0016212)	Herc4 (MGP_SPRETEiJ_G0016211)	Mypn (MGP_SPRETEiJ_G0016210)	Atoh7 (MGP_SPRETEiJ_G0016209) #11	Hnrnph3 (MGP_SPRETEiJ_G0016207) #13	Rufy2 (MGP_SPRETEiJ_G0016206) #14	Dna2 (MGP_SPRETEiJ_G0016205) #15	Slc25a16 (MGP_SPRETEiJ_G0016204) #16	Tet1 (MGP_SPRETEiJ_G0016203) #17	Ccar1 (MGP_SPRETEiJ_G0016202) #18	Stox1 (MGP_SPRETEiJ_G0016201) #19	Ddx50 (MGP_SPRETEiJ_G0016200) #21	Ddx21 (MGP_SPRETEiJ_G0016199) #22	Kifbp (MGP_SPRETEiJ_G0016198) #23	Srgn (MGP_SPRETEiJ_G0016197) #24	MGP_SPRETEiJ_G0016196 #26	Supv3l1 (MGP_SPRETEiJ_G0016195) #27	Vps26a (MGP_SPRETEiJ_G0016194) #25	Hkdc1 (MGP_SPRETEiJ_G0016193) #28	Hk1 (MGP_SPRETEiJ_G0016192) #29	Tacr2 (MGP_SPRETEiJ_G0016191) #30	Tspan15 (MGP_SPRETEiJ_G0016190) #31	Neurog3 (MGP_SPRETEiJ_G0016189) #33	Fam241b (MGP_SPRETEiJ_G0016188) #32	Col13a1 (MGP_SPRETEiJ_G0016187) #34	Macroh2a2 (MGP_SPRETEiJ_G0016186) #35	Aifm2 (MGP_SPRETEiJ_G0016185) #36	Tysnd1 (MGP_SPRETEiJ_G0016184) #37
Mouse	MODERN SPECIES	1	Dnajc12 (ENSMUSG00000036764)	Sirt1 (ENSMUSG00000020063)	Herc4 (ENSMUSG00000020064)	Mypn (ENSMUSG00000020067)	Atoh7 (ENSMUSG00000036816) #11	Pbld1 (ENSMUSG00000112129) ##12	Pbld2 (ENSMUSG00000020072) #12	Hnrnph3 (ENSMUSG00000020069) #13	Rufy2 (ENSMUSG00000020070) #14	Dna2 (ENSMUSG00000036875) #15	Slc25a16 (ENSMUSG00000071253) #16	Tet1 (ENSMUSG00000047146) #17	Ccar1 (ENSMUSG00000020074) #18	Stox1 (ENSMUSG00000036923) #19	Ddx50 (ENSMUSG00000020076) #21	Ddx21 (ENSMUSG00000020075) #22	Kifbp (ENSMUSG00000036955) #23	Srgn (ENSMUSG00000020077) #24	Vps26a (ENSMUSG00000020078) #25	Supv3l1 (ENSMUSG00000020079) #27	Hkdc1 (ENSMUSG00000020080) #28	Hk1 (ENSMUSG00000037012) #29	Tacr2 (ENSMUSG00000020081) #30	Tspan15 (ENSMUSG00000037031) #31	Neurog3 (ENSMUSG00000044312) #33	Fam241b (ENSMUSG00000020083) #32	Col13a1 (ENSMUSG00000058806) #34	Macroh2a2 (ENSMUSG00000020086) #35	Aifm2 (ENSMUSG00000020085) #36	Tysnd1 (ENSMUSG00000020087) #37	Sar1a (ENSMUSG00000020088)
Ryukyu mouse	MODERN SPECIES	1	Ctnna3 (MGP_CAROLIEiJ_G0015403)	Dnajc12 (MGP_CAROLIEiJ_G0015402)	Sirt1 (MGP_CAROLIEiJ_G0015401)	Herc4 (MGP_CAROLIEiJ_G0015400)	Mypn (MGP_CAROLIEiJ_G0015399)	Atoh7 (MGP_CAROLIEiJ_G0015398) #11	Pbld1 (MGP_CAROLIEiJ_G0015397) ##12	Hnrnph3 (MGP_CAROLIEiJ_G0015396) #13	Rufy2 (MGP_CAROLIEiJ_G0015395) #14	Dna2 (MGP_CAROLIEiJ_G0015394) #15	Slc25a16 (MGP_CAROLIEiJ_G0015393) #16	Tet1 (MGP_CAROLIEiJ_G0015392) #17	Ccar1 (MGP_CAROLIEiJ_G0015391) #18	Stox1 (MGP_CAROLIEiJ_G0015390) #19	Ddx50 (MGP_CAROLIEiJ_G0015389) #21	Ddx21 (MGP_CAROLIEiJ_G0015388) #22	Kifbp (MGP_CAROLIEiJ_G0015387) #23	Srgn (MGP_CAROLIEiJ_G0015386) #24	Vps26a (MGP_CAROLIEiJ_G0015385) #25	MGP_CAROLIEiJ_G0015384 #26	Supv3l1 (MGP_CAROLIEiJ_G0015383) #27	Hkdc1 (MGP_CAROLIEiJ_G0015382) #28	Hk1 (MGP_CAROLIEiJ_G0015381) #29	Tacr2 (MGP_CAROLIEiJ_G0015380) #30	Tspan15 (MGP_CAROLIEiJ_G0015379) #31	Neurog3 (MGP_CAROLIEiJ_G0015378) #33	Fam241b (MGP_CAROLIEiJ_G0015377) #32	Col13a1 (MGP_CAROLIEiJ_G0015376) #34	Macroh2a2 (MGP_CAROLIEiJ_G0015375) #35	Aifm2 (MGP_CAROLIEiJ_G0015374) #36	Tysnd1 (MGP_CAROLIEiJ_G0015373) #37
Shrew mouse	MODERN SPECIES	22	Ctnna3 (MGP_PahariEiJ_G0030819)	Dnajc12 (MGP_PahariEiJ_G0030818)	Sirt1 (MGP_PahariEiJ_G0030817)	Herc4 (MGP_PahariEiJ_G0030816)	Mypn (MGP_PahariEiJ_G0030815)	Atoh7 (MGP_PahariEiJ_G0030814) #11	Pbld2 (MGP_PahariEiJ_G0030813) #12	Hnrnph3 (MGP_PahariEiJ_G0030812) #13	Rufy2 (MGP_PahariEiJ_G0030811) #14	Dna2 (MGP_PahariEiJ_G0030810) #15	Slc25a16 (MGP_PahariEiJ_G0030809) #16	Tet1 (MGP_PahariEiJ_G0030808) #17	Ccar1 (MGP_PahariEiJ_G0030807) #18	Stox1 (MGP_PahariEiJ_G0030806) #19	Ddx50 (MGP_PahariEiJ_G0030805) #21	Ddx21 (MGP_PahariEiJ_G0030804) #22	Kifbp (MGP_PahariEiJ_G0030803) #23	Srgn (MGP_PahariEiJ_G0030802) #24	Vps26a (MGP_PahariEiJ_G0030801) #25	MGP_PahariEiJ_G0030800 #26	Supv3l1 (MGP_PahariEiJ_G0030799) #27	Hkdc1 (MGP_PahariEiJ_G0030798) #28	Hk1 (MGP_PahariEiJ_G0030797) #29	Tacr2 (MGP_PahariEiJ_G0030796) #30	Tspan15 (MGP_PahariEiJ_G0030795) #31	Neurog3 (MGP_PahariEiJ_G0030794) #33	MGP_PahariEiJ_G0030793	Col13a1 (MGP_PahariEiJ_G0030792) #34	Macroh2a2 (MGP_PahariEiJ_G0030791) #35	Aifm2 (MGP_PahariEiJ_G0030790) #36	Tysnd1 (MGP_PahariEiJ_G0030789) #37