Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Glires	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Rodentia	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Sciuridae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.xb #33	ENSGT00940000156582 #34
Marmotini	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.b.b.a.a	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.gb	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.xb.a #33	ENSGT00940000156582 #34
Alpin marmot	MODERN SPECIES	5															AGPS (ENSMMMG00000023778) #21	NFE2L2 (ENSMMMG00000023776) #22	MTX2 (ENSMMMG00000023772) #23	HOXD3 (ENSMMMG00000023768) #24	HOXD4 (ENSMMMG00000023767) #25	ENSMMMG00000023765 #26	HOXD9 (ENSMMMG00000023764) #27	HOXD10 (ENSMMMG00000023763) #28	ENSMMMG00000023762 #29	HOXD12 (ENSMMMG00000023760) #30	HOXD13 (ENSMMMG00000023759) #31	LNPK (ENSMMMG00000023755) #32	ENSMMMG00000023748 #33	ATF2 (ENSMMMG00000023733) #34	ENSMMMG00000023730 #35	CHN1 (ENSMMMG00000023718) #36	CHRNA1 (ENSMMMG00000023717) #37
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.gb	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.xb.a #33	ENSGT00940000156582 #34
Arctic ground squirrel	MODERN SPECIES	96	ENSUPAG00010005828	ENSUPAG00010005845	ENSUPAG00010005849	ENSUPAG00010005854	ENSUPAG00010005857	PLEKHA3 (ENSUPAG00010005864)	FKBP7 (ENSUPAG00010005868)	PJVK (ENSUPAG00010005878)	PRKRA (ENSUPAG00010005881)	OSBPL6 (ENSUPAG00010005891)	RBM45 (ENSUPAG00010006036)	ENSUPAG00010006054	PDE11A (ENSUPAG00010006062)	ENSUPAG00010006082	AGPS (ENSUPAG00010006084) #21	NFE2L2 (ENSUPAG00010006108) #22	HNRNPA3 (ENSUPAG00010006133)
Squirrel	MODERN SPECIES	109	ENSSTOG00000034976	ENSSTOG00000033165	ENSSTOG00000032305	ENSSTOG00000032899	ENSSTOG00000006208	PLEKHA3 (ENSSTOG00000006191)	FKBP7 (ENSSTOG00000006176)	PJVK (ENSSTOG00000028411)	PRKRA (ENSSTOG00000006156)	OSBPL6 (ENSSTOG00000006092)	RBM45 (ENSSTOG00000002708)	ENSSTOG00000008853	PDE11A (ENSSTOG00000012639)	ENSSTOG00000003267	AGPS (ENSSTOG00000012623) #21	NFE2L2 (ENSSTOG00000000313) #22	HNRNPA3 (ENSSTOG00000025125)	ENSSTOG00000030884	MTX2 (ENSSTOG00000014688) #23	HOXD1 (ENSSTOG00000012230)	HOXD3 (ENSSTOG00000014680) #24	HOXD4 (ENSSTOG00000029055) #25	ENSSTOG00000023453 #26	HOXD9 (ENSSTOG00000026761) #27	HOXD10 (ENSSTOG00000003935) #28	HOXD12 (ENSSTOG00000004918) #30	HOXD13 (ENSSTOG00000004117) #31	EVX2 (ENSSTOG00000014512)	LNPK (ENSSTOG00000014498) #32	ENSSTOG00000013572 #33	ATF2 (ENSSTOG00000014079) #34
Eurasian red squirrel	MODERN SPECIES	12	CCDC141 (ENSSVLG00005020180)	ENSSVLG00005008368	PLEKHA3 (ENSSVLG00005005206)	FKBP7 (ENSSVLG00005005181)	ENSSVLG00005005163	PJVK (ENSSVLG00005005095)	PRKRA (ENSSVLG00005005027)	OSBPL6 (ENSSVLG00005004465)	RBM45 (ENSSVLG00005004137)	ENSSVLG00005004113	PDE11A (ENSSVLG00005004050)	ENSSVLG00005004018	ENSSVLG00005004006	ENSSVLG00005003996	AGPS (ENSSVLG00005003959) #21	ENSSVLG00005003903 #22	ENSSVLG00005003881	MTX2 (ENSSVLG00005003812) #23	HOXD1 (ENSSVLG00005003762)	HOXD4 (ENSSVLG00005003676) #25	HOXD8 (ENSSVLG00005003645) #26	HOXD9 (ENSSVLG00005003618) #27	HOXD10 (ENSSVLG00005003599) #28	HOXD11 (ENSSVLG00005003581) #29	HOXD12 (ENSSVLG00005003565) #30	HOXD13 (ENSSVLG00005003554) #31	EVX2 (ENSSVLG00005003539)	LNPK (ENSSVLG00005003500) #32	ENSSVLG00005003466	ENSSVLG00005003430 #33	ENSSVLG00005003279 #34
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT01100000263523.A	ENSGT01100000263523.B	ENSGT00900000143159	ENSGT00900000143154	ENSGT00920000150542	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000014023	ENSCLAG00000015797	ENSCLAG00000015650	ENSCLAG00000016023	PLEKHA3 (ENSCLAG00000014135)	PRKRA (ENSCLAG00000010338)	PJVK (ENSCLAG00000010713)	OSBPL6 (ENSCLAG00000011433)	RBM45 (ENSCLAG00000015215)	PDE11A (ENSCLAG00000013013)	ENSCLAG00000013714	ENSCLAG00000017938	AGPS (ENSCLAG00000013279) #21	ENSCLAG00000013627	ENSCLAG00000012626	NFE2L2 (ENSCLAG00000013122) #22	HNRNPA3 (ENSCLAG00000012855)	ENSCLAG00000011088	MTX2 (ENSCLAG00000011598) #23	HOXD1 (ENSCLAG00000012505)	ENSCLAG00000013605 #24	HOXD4 (ENSCLAG00000014461) #25	ENSCLAG00000011108 #26	HOXD9 (ENSCLAG00000012447) #27	HOXD10 (ENSCLAG00000012482) #28	ENSCLAG00000012563 #29	HOXD12 (ENSCLAG00000013058) #30	HOXD13 (ENSCLAG00000013095) #31	EVX2 (ENSCLAG00000014389)	LNPK (ENSCLAG00000015033) #32	TRIML1 (ENSCLAG00000014494)
Degu	MODERN SPECIES	106	ENSODEG00000007812	ENSODEG00000008370	ENSODEG00000008948	PLEKHA3 (ENSODEG00000007880)	ENSODEG00000008149	PJVK (ENSODEG00000008177)	ENSODEG00000008743	OSBPL6 (ENSODEG00000009667)	ENSODEG00000019659	RBM45 (ENSODEG00000007959)	ENSODEG00000019574	PDE11A (ENSODEG00000010682)	ENSODEG00000019592	ENSODEG00000020058	AGPS (ENSODEG00000008272) #21	NFE2L2 (ENSODEG00000010043) #22	ENSODEG00000009265	ENSODEG00000009697	MTX2 (ENSODEG00000008062) #23	ENSODEG00000008879	HOXD1 (ENSODEG00000008961)	HOXD3 (ENSODEG00000009722) #24	HOXD4 (ENSODEG00000010297) #25	ENSODEG00000010496 #26	HOXD9 (ENSODEG00000008626) #27	HOXD10 (ENSODEG00000010382) #28	ENSODEG00000010934 #29	HOXD12 (ENSODEG00000008376) #30	HOXD13 (ENSODEG00000008793) #31	EVX2 (ENSODEG00000010771)	ENSODEG00000008992
Guinea pig	MODERN SPECIES	3	CCDC141 (ENSCPOG00000003955)	ENSCPOG00000032370	ENSCPOG00000030784	ENSCPOG00000038729	ENSCPOG00000034673	ENSCPOG00000036479	PLEKHA3 (ENSCPOG00000003906)	FKBP7 (ENSCPOG00000037159)	PJVK (ENSCPOG00000037882)	ENSCPOG00000003900	OSBPL6 (ENSCPOG00000002816)	RBM45 (ENSCPOG00000000684)	PDE11A (ENSCPOG00000000682)	ENSCPOG00000000681	AGPS (ENSCPOG00000000679) #21	NFE2L2 (ENSCPOG00000031261) #22	ENSCPOG00000004251	ENSCPOG00000027250	MTX2 (ENSCPOG00000011099) #23	HOXD1 (ENSCPOG00000005509)	HOXD3 (ENSCPOG00000034932) #24	HOXD4 (ENSCPOG00000036552) #25	HOXD8 (ENSCPOG00000015005) #26	HOXD9 (ENSCPOG00000015006) #27	HOXD10 (ENSCPOG00000011368) #28	ENSCPOG00000019766 #29	HOXD12 (ENSCPOG00000005496) #30	HOXD13 (ENSCPOG00000006722) #31	EVX2 (ENSCPOG00000006711)	LNPK (ENSCPOG00000010971) #32	ATP5MC3 (ENSCPOG00000040161) #33
Naked mole-rat female	MODERN SPECIES	22	CCDC141 (ENSHGLG00000002888)	TTN (ENSHGLG00000036835)	ENSHGLG00000018641	FKBP7 (ENSHGLG00000019268)	PJVK (ENSHGLG00000011003)	ENSHGLG00000010663	ENSHGLG00000003065	ENSHGLG00000040220	ENSHGLG00000045276	ENSHGLG00000007342	ENSHGLG00000006609	ENSHGLG00000005226	TTC30B (ENSHGLG00000042840)	ENSHGLG00000036841	AGPS (ENSHGLG00000007541) #21	NFE2L2 (ENSHGLG00000006475) #22	HNRNPA3 (ENSHGLG00000005451)	ENSHGLG00000036655	ENSHGLG00000046644	ENSHGLG00000012734	MTX2 (ENSHGLG00000004177) #23	HOXD1 (ENSHGLG00000004072)	HOXD3 (ENSHGLG00000003761) #24	HOXD4 (ENSHGLG00000037842) #25	ENSHGLG00000003577 #26	HOXD10 (ENSHGLG00000033462) #28	HOXD9 (ENSHGLG00000007185) #27	HOXD11 (ENSHGLG00000034527) #29	HOXD12 (ENSHGLG00000005403) #30	HOXD13 (ENSHGLG00000050884) #31	EVX2 (ENSHGLG00000004218)
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263523.B	ENSGT01100000263523.A	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Myomorpha	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B	ENSGT01100000263523.A	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Muroidea	ANCESTRAL SPECIES	34	ENSGT00900000143154	ENSGT01100000263532.C.c.b	ENSGT01100000263523.B	ENSGT01100000263523.A	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Cricetidae	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT00900000143154	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00900000143159	ENSGT01100000263523.B	ENSGT00900000143154	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00940000154808.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001011105	ENSCGRG00001011823	ENSCGRG00001001535	Plekha3 (ENSCGRG00001002827)	Fkbp7 (ENSCGRG00001004871)	Pjvk (ENSCGRG00001006219)	Prkra (ENSCGRG00001009200)	Osbpl6 (ENSCGRG00001002669)	Rbm45 (ENSCGRG00001005759)	Cyct (ENSCGRG00001008096)	Pde11a (ENSCGRG00001011422)	ENSCGRG00001003072	Ttc30a1 (ENSCGRG00001000892)	Ttc30b (ENSCGRG00001002157)	Agps (ENSCGRG00001003863) #21	Nfe2l2 (ENSCGRG00001005715) #22	ENSCGRG00001008592	ENSCGRG00001003235	Mtx2 (ENSCGRG00001014247) #23	ENSCGRG00001014512	Hoxd1 (ENSCGRG00001011572)	Hoxd3 (ENSCGRG00001011863) #24	Hoxd4 (ENSCGRG00001012360) #25	Hoxd8 (ENSCGRG00001013130) #26	Hoxd9 (ENSCGRG00001005991) #27	Hoxd10 (ENSCGRG00001008302) #28	Hoxd11 (ENSCGRG00001010386) #29	Hoxd12 (ENSCGRG00001000877) #30	Hoxd13 (ENSCGRG00001001661) #31	Evx2 (ENSCGRG00001003649)	ENSCGRG00001006802
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000001413	ENSMAUG00000016510	ENSMAUG00000018214	ENSMAUG00000018562	ENSMAUG00000019513	ENSMAUG00000018786	Plekha3 (ENSMAUG00000019341)	Fkbp7 (ENSMAUG00000016606)	Pjvk (ENSMAUG00000018018)	Prkra (ENSMAUG00000019631)	Osbpl6 (ENSMAUG00000018609)	Rbm45 (ENSMAUG00000016948)	Cyct (ENSMAUG00000016722)	Pde11a (ENSMAUG00000021257)	Agps (ENSMAUG00000017317) #21	Nfe2l2 (ENSMAUG00000017700) #22	ENSMAUG00000017462	Mtx2 (ENSMAUG00000017870) #23	Hoxd1 (ENSMAUG00000018401)	Hoxd3 (ENSMAUG00000018318) #24	Hoxd4 (ENSMAUG00000018545) #25	Hoxd8 (ENSMAUG00000018092) #26	Hoxd9 (ENSMAUG00000018538) #27	Hoxd10 (ENSMAUG00000016731) #28	ENSMAUG00000020249 #29	Hoxd12 (ENSMAUG00000018416) #30	Hoxd13 (ENSMAUG00000017185) #31	Evx2 (ENSMAUG00000020383)	Lnpk (ENSMAUG00000018821) #32	ENSMAUG00000020495	Atp5g3 (ENSMAUG00000017685) #33
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00900000143154	ENSGT01100000263523.A	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Prairie vole	MODERN SPECIES	12	ENSMOCG00000017985	ENSMOCG00000017796	ENSMOCG00000015811	Plekha3 (ENSMOCG00000004146)	Fkbp7 (ENSMOCG00000008125)	Pjvk (ENSMOCG00000006830)	Prkra (ENSMOCG00000004548)	Osbpl6 (ENSMOCG00000017155)	Rbm45 (ENSMOCG00000017295)	Cyct (ENSMOCG00000021506)	Pde11a (ENSMOCG00000005959)	Ttc30a2 (ENSMOCG00000002802)	ENSMOCG00000001098	Ttc30b (ENSMOCG00000001580)	Agps (ENSMOCG00000017476) #21	Nfe2l2 (ENSMOCG00000020760) #22	ENSMOCG00000019409	Mtx2 (ENSMOCG00000017110) #23	Hoxd1 (ENSMOCG00000014086)	Hoxd4 (ENSMOCG00000013646) #25	Hoxd3 (ENSMOCG00000022552) #24	Hoxd8 (ENSMOCG00000022746) #26	Hoxd9 (ENSMOCG00000005870) #27	Hoxd10 (ENSMOCG00000006052) #28	Hoxd11 (ENSMOCG00000019226) #29	Hoxd12 (ENSMOCG00000018953) #30	Hoxd13 (ENSMOCG00000014618) #31	Evx2 (ENSMOCG00000010466)	Lnpk (ENSMOCG00000022345) #32	ENSMOCG00000012786 #33	Atf2 (ENSMOCG00000015301) #34
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000028754	ENSPEMG00000014359	Ttn (ENSPEMG00000022085)	Plekha3 (ENSPEMG00000021541)	Fkbp7 (ENSPEMG00000011534)	Pjvk (ENSPEMG00000013970)	Prkra (ENSPEMG00000011967)	Osbpl6 (ENSPEMG00000010580)	Rbm45 (ENSPEMG00000002470)	Cyct (ENSPEMG00000028091)	Pde11a (ENSPEMG00000021597)	Ttc30a1 (ENSPEMG00000025624)	Ttc30b (ENSPEMG00000001902)	ENSPEMG00000023662	Agps (ENSPEMG00000010561) #21	Nfe2l2 (ENSPEMG00000023181) #22	Hnrnpa3 (ENSPEMG00000021885)	Mtx2 (ENSPEMG00000022093) #23	Hoxd1 (ENSPEMG00000021389)	Hoxd3 (ENSPEMG00000028862) #24	Hoxd4 (ENSPEMG00000024627) #25	ENSPEMG00000029322	ENSPEMG00000028623 #26	Hoxd9 (ENSPEMG00000006162) #27	Hoxd10 (ENSPEMG00000030445) #28	ENSPEMG00000018816 #29	Hoxd12 (ENSPEMG00000019240) #30	Hoxd13 (ENSPEMG00000022412) #31	Evx2 (ENSPEMG00000022145)	Lnpk (ENSPEMG00000017827) #32	ENSPEMG00000008662
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.a.a	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Mouse	MODERN SPECIES	11	Sestd1 (ENSMUSG00000042272)	Ccdc141 (ENSMUSG00000044033)	Ttn (ENSMUSG00000051747)	Plekha3 (ENSMUSG00000002733)	Fkbp7 (ENSMUSG00000002732)	Pjvk (ENSMUSG00000075267)	Prkra (ENSMUSG00000002731)	Osbpl6 (ENSMUSG00000042359)	Rbm45 (ENSMUSG00000042369)	Cyct (ENSMUSG00000056436)	Pde11a (ENSMUSG00000075270)	Ttc30a1 (ENSMUSG00000075271)	Ttc30a2 (ENSMUSG00000075272)	Ttc30b (ENSMUSG00000075273)	Agps (ENSMUSG00000042410) #21	Nfe2l2 (ENSMUSG00000015839) #22	Hnrnpa3 (ENSMUSG00000059005)	Mtx2 (ENSMUSG00000027099) #23	Hoxd1 (ENSMUSG00000042448)	Hoxd4 (ENSMUSG00000101174) #25	Hoxd3 (ENSMUSG00000079277) #24	Hoxd8 (ENSMUSG00000027102) #26	Hoxd9 (ENSMUSG00000043342) #27	Hoxd10 (ENSMUSG00000050368) #28	Hoxd11 (ENSMUSG00000042499) #29	Hoxd12 (ENSMUSG00000001823) #30	Hoxd13 (ENSMUSG00000001819) #31	Evx2 (ENSMUSG00000001815)	Lnpk (ENSMUSG00000009207) #32	Atp5g3 (ENSMUSG00000018770) #33	Atf2 (ENSMUSG00000027104) #34
Mus_C	ANCESTRAL SPECIES		ENSGT00940000153458.B.f.e	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00390000010116.y.b	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b	ENSGT00940000153147.m.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33
Steppe mouse	MODERN SPECIES	3326																Nfe2l2 (ENSMSIG00000005673) #22	ENSMSIG00000005709	ENSMSIG00000005981	ENSMSIG00000006005	Mtx2 (ENSMSIG00000006053) #23	Hoxd1 (ENSMSIG00000006137)	Hoxd3 (ENSMSIG00000006158) #24	ENSMSIG00000006186 #25	Hoxd8 (ENSMSIG00000006283) #26	Hoxd9 (ENSMSIG00000006304) #27	Hoxd10 (ENSMSIG00000006313) #28	Hoxd11 (ENSMSIG00000006326) #29	Hoxd12 (ENSMSIG00000006333) #30	Hoxd13 (ENSMSIG00000006348) #31	Evx2 (ENSMSIG00000006361)	Lnpk (ENSMSIG00000006386) #32
spretus	MODERN SPECIES	11	Ube2e3 (MGP_SPRETEiJ_G0024618)	Zfp385b (MGP_SPRETEiJ_G0024616)	Sestd1 (MGP_SPRETEiJ_G0024615)	Ccdc141 (MGP_SPRETEiJ_G0024614)	Ttn (MGP_SPRETEiJ_G0024613)	Plekha3 (MGP_SPRETEiJ_G0024612)	Fkbp7 (MGP_SPRETEiJ_G0024611)	Pjvk (MGP_SPRETEiJ_G0024610)	Prkra (MGP_SPRETEiJ_G0024609)	Osbpl6 (MGP_SPRETEiJ_G0024608)	Rbm45 (MGP_SPRETEiJ_G0024607)	Cyct (MGP_SPRETEiJ_G0024606)	Pde11a (MGP_SPRETEiJ_G0024605)	MGP_SPRETEiJ_G0024604	Agps (MGP_SPRETEiJ_G0024603) #21	Nfe2l2 (MGP_SPRETEiJ_G0024602) #22	MGP_SPRETEiJ_G0024601	Mtx2 (MGP_SPRETEiJ_G0024600) #23	Hoxd1 (MGP_SPRETEiJ_G0024599)	MGP_SPRETEiJ_G0024598 #25	Hoxd4 (MGP_SPRETEiJ_G0024597) #25	Hoxd3 (MGP_SPRETEiJ_G0024596) #24	Hoxd8 (MGP_SPRETEiJ_G0024595) #26	Hoxd9 (MGP_SPRETEiJ_G0024594) #27	Hoxd10 (MGP_SPRETEiJ_G0024593) #28	Hoxd11 (MGP_SPRETEiJ_G0024592) #29	Hoxd12 (MGP_SPRETEiJ_G0024591) #30	Hoxd13 (MGP_SPRETEiJ_G0024590) #31	Evx2 (MGP_SPRETEiJ_G0024589)	Lnpk (MGP_SPRETEiJ_G0024588) #32	Atp5g3 (MGP_SPRETEiJ_G0024587) #33
Ryukyu mouse	MODERN SPECIES	11	Sestd1 (MGP_CAROLIEiJ_G0023694)	Ccdc141 (MGP_CAROLIEiJ_G0023693)	Ttn (MGP_CAROLIEiJ_G0023692)	Plekha3 (MGP_CAROLIEiJ_G0023691)	Fkbp7 (MGP_CAROLIEiJ_G0023690)	Pjvk (MGP_CAROLIEiJ_G0023689)	Prkra (MGP_CAROLIEiJ_G0023688)	Osbpl6 (MGP_CAROLIEiJ_G0023687)	Rbm45 (MGP_CAROLIEiJ_G0023686)	Cyct (MGP_CAROLIEiJ_G0023685)	MGP_CAROLIEiJ_G0023684	Pde11a (MGP_CAROLIEiJ_G0023683)	MGP_CAROLIEiJ_G0023682	MGP_CAROLIEiJ_G0023681	Agps (MGP_CAROLIEiJ_G0023680) #21	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #22	MGP_CAROLIEiJ_G0023678	Mtx2 (MGP_CAROLIEiJ_G0023677) #23	Hoxd1 (MGP_CAROLIEiJ_G0023676)	MGP_CAROLIEiJ_G0023675 #25	Hoxd4 (MGP_CAROLIEiJ_G0023674) #25	Hoxd3 (MGP_CAROLIEiJ_G0023673) #24	Hoxd8 (MGP_CAROLIEiJ_G0023672) #26	Hoxd9 (MGP_CAROLIEiJ_G0023671) #27	Hoxd10 (MGP_CAROLIEiJ_G0023670) #28	Hoxd11 (MGP_CAROLIEiJ_G0023669) #29	Hoxd12 (MGP_CAROLIEiJ_G0023668) #30	Hoxd13 (MGP_CAROLIEiJ_G0023667) #31	Evx2 (MGP_CAROLIEiJ_G0023666)	Lnpk (MGP_CAROLIEiJ_G0023665) #32	Atp5g3 (MGP_CAROLIEiJ_G0023664) #33
Shrew mouse	MODERN SPECIES	16	Zfp385b (MGP_PahariEiJ_G0025146)	Sestd1 (MGP_PahariEiJ_G0025145)	Ccdc141 (MGP_PahariEiJ_G0025144)	MGP_PahariEiJ_G0025143	Plekha3 (MGP_PahariEiJ_G0025142)	Fkbp7 (MGP_PahariEiJ_G0025141)	Pjvk (MGP_PahariEiJ_G0025140)	Prkra (MGP_PahariEiJ_G0025139)	Osbpl6 (MGP_PahariEiJ_G0025138)	Rbm45 (MGP_PahariEiJ_G0025137)	Cyct (MGP_PahariEiJ_G0025136)	Pde11a (MGP_PahariEiJ_G0025135)	MGP_PahariEiJ_G0025134	MGP_PahariEiJ_G0025133	MGP_PahariEiJ_G0025132 #21	Nfe2l2 (MGP_PahariEiJ_G0025131) #22	Hnrnpa3 (MGP_PahariEiJ_G0025130)	Mtx2 (MGP_PahariEiJ_G0025129) #23	Hoxd1 (MGP_PahariEiJ_G0025128)	MGP_PahariEiJ_G0025127 #25	Hoxd4 (MGP_PahariEiJ_G0025126) #25	Hoxd3 (MGP_PahariEiJ_G0025125) #24	Hoxd8 (MGP_PahariEiJ_G0025124) #26	Hoxd9 (MGP_PahariEiJ_G0025123) #27	Hoxd10 (MGP_PahariEiJ_G0025122) #28	Hoxd11 (MGP_PahariEiJ_G0025121) #29	Hoxd12 (MGP_PahariEiJ_G0025120) #30	Hoxd13 (MGP_PahariEiJ_G0025119) #31	Evx2 (MGP_PahariEiJ_G0025118)	Lnpk (MGP_PahariEiJ_G0025117) #32	Atp5g3 (MGP_PahariEiJ_G0025116) #33
Rat	MODERN SPECIES	13	Sestd1 (ENSRNOG00000012603)	Ccdc141 (ENSRNOG00000012580)	Ttn (ENSRNOG00000069271)	Plekha3 (ENSRNOG00000011830)	Fkbp7 (ENSRNOG00000011758)	Pjvk (ENSRNOG00000038165)	Prkra (ENSRNOG00000011195)	Osbpl6 (ENSRNOG00000010812)	Rbm45 (ENSRNOG00000010595)	Cyct (ENSRNOG00000024457)	Ttc30a (ENSRNOG00000069321)	Ttc30a1 (ENSRNOG00000052519)	Ttc30b (ENSRNOG00000059460)	Agps (ENSRNOG00000001547) #21	ENSRNOG00000066660	Nfe2l2 (ENSRNOG00000001548) #22	Hnrnpa3 (ENSRNOG00000052968)	Mtx2 (ENSRNOG00000001559) #23	Hoxd1 (ENSRNOG00000001572)	Hoxd3 (ENSRNOG00000001577) #24	AABR07052559.1 (ENSRNOG00000053144)	Hoxd4 (ENSRNOG00000001578) #25	Hoxd8 (ENSRNOG00000071108) #26	Hoxd9 (ENSRNOG00000001580) #27	Hoxd10 (ENSRNOG00000001581) #28	Hoxd11 (ENSRNOG00000069591) #29	Hoxd12 (ENSRNOG00000001587) #30	Hoxd13 (ENSRNOG00000001588) #31	Evx2 (ENSRNOG00000001589)	Lnpk (ENSRNOG00000001593) #32	Atp5mc3 (ENSRNOG00000001596) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	ENSNGAG00000022834	ENSNGAG00000021249	ENSNGAG00000016600	ENSNGAG00000021911	Plekha3 (ENSNGAG00000020579)	Fkbp7 (ENSNGAG00000022641)	Pjvk (ENSNGAG00000022020)	Prkra (ENSNGAG00000021816)	Osbpl6 (ENSNGAG00000014527)	Rbm45 (ENSNGAG00000023886)	ENSNGAG00000021016	Cyct (ENSNGAG00000023547)	Pde11a (ENSNGAG00000023493)	ENSNGAG00000022555	Agps (ENSNGAG00000020263) #21	Nfe2l2 (ENSNGAG00000022809) #22	ENSNGAG00000021745	Mtx2 (ENSNGAG00000020555) #23	Hoxd1 (ENSNGAG00000021714)	Hoxd3 (ENSNGAG00000021055) #24	Hoxd4 (ENSNGAG00000020270) #25	Hoxd8 (ENSNGAG00000011799) #26	Hoxd9 (ENSNGAG00000011105) #27	Hoxd10 (ENSNGAG00000023868) #28	Hoxd11 (ENSNGAG00000023438) #29	Hoxd12 (ENSNGAG00000023455) #30	Hoxd13 (ENSNGAG00000023727) #31	Evx2 (ENSNGAG00000023877)	Lnpk (ENSNGAG00000023466) #32	Atp5g3 (ENSNGAG00000004748) #33	Atf2 (ENSNGAG00000003870) #34
Lesser Egyptian jerboa	MODERN SPECIES	75	ENSJJAG00000020744	ENSJJAG00000002374	ENSJJAG00000002097	ENSJJAG00000009117	ENSJJAG00000015136	Plekha3 (ENSJJAG00000021299)	Fkbp7 (ENSJJAG00000012221)	Pjvk (ENSJJAG00000012900)	Prkra (ENSJJAG00000013031)	Osbpl6 (ENSJJAG00000017863)	Rbm45 (ENSJJAG00000001312)	Pde11a (ENSJJAG00000018583)	ENSJJAG00000012087	ENSJJAG00000014867	Agps (ENSJJAG00000016720) #21	Nfe2l2 (ENSJJAG00000019899) #22	ENSJJAG00000000149	ENSJJAG00000013228 #23	ENSJJAG00000019952	Hoxd1 (ENSJJAG00000019059)	Hoxd10 (ENSJJAG00000011932) #28	Hoxd11 (ENSJJAG00000012344) #29	Hoxd12 (ENSJJAG00000016261) #30	Hoxd13 (ENSJJAG00000016388) #31	Evx2 (ENSJJAG00000017484)	Lnpk (ENSJJAG00000011710) #32	ENSJJAG00000013766	Atp5g3 (ENSJJAG00000022403) #33	Atf2 (ENSJJAG00000015836) #34	Chn1 (ENSJJAG00000015001) #36	ENSJJAG00000014124
Kangaroo rat	MODERN SPECIES	324	Sestd1 (ENSDORG00000012622)	ENSDORG00000027337	ENSDORG00000029701	ENSDORG00000029166	Plekha3 (ENSDORG00000015344)	Fkbp7 (ENSDORG00000013340)	Pjvk (ENSDORG00000013339)	Prkra (ENSDORG00000013338)	Osbpl6 (ENSDORG00000001912)	Rbm45 (ENSDORG00000015831)	Cyct (ENSDORG00000004101)	ENSDORG00000023150	ENSDORG00000028697	ENSDORG00000028567	Agps (ENSDORG00000006480) #21	Nfe2l2 (ENSDORG00000030173) #22	Hnrnpa3 (ENSDORG00000011155)	Mtx2 (ENSDORG00000003848) #23	Hoxd1 (ENSDORG00000009445)	Hoxd3 (ENSDORG00000029389) #24	Hoxd4 (ENSDORG00000028681) #25	ENSDORG00000027655 #26	Hoxd10 (ENSDORG00000009436) #28	ENSDORG00000029219 #29	Hoxd12 (ENSDORG00000009434) #30	Evx2 (ENSDORG00000009432)	Lnpk (ENSDORG00000015736) #32	Atp5g3 (ENSDORG00000012973) #33	Atf2 (ENSDORG00000024409) #34	Chn1 (ENSDORG00000002182) #36	Chrna1 (ENSDORG00000001136) #37
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b	ENSGT01100000263532.B	ENSGT01100000263532.A.a.a.a.b.c.a	ENSGT01100000263523.K	ENSGT00940000155850	ENSGT00940000159964	ENSGT00950000183140.a.b	ENSGT00940000157618	ENSGT00940000156791	ENSGT00680000100059	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151	ENSGT00940000164264	ENSGT00390000010116	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b	ENSGT00950000182919.C #23	ENSGT00940000161892	ENSGT00940000160027 #24	ENSGT00940000157270 #25	ENSGT00940000161653 #26	ENSGT00940000161503 #27	ENSGT00940000158266 #28	ENSGT00940000161308 #29	ENSGT00940000159938 #30	ENSGT00940000161457 #31	ENSGT00940000161025	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #33	ENSGT00940000156582 #34
Rabbit	MODERN SPECIES	18	ENSOCUG00000035152	ENSOCUG00000033996	ENSOCUG00000016777	PLEKHA3 (ENSOCUG00000005495)	FKBP7 (ENSOCUG00000024679)	PJVK (ENSOCUG00000005493)	PRKRA (ENSOCUG00000005489)	OSBPL6 (ENSOCUG00000004078)	RBM45 (ENSOCUG00000001125)	ENSOCUG00000025342	ENSOCUG00000039559	ENSOCUG00000008038	ENSOCUG00000039012	ENSOCUG00000029884	AGPS (ENSOCUG00000011521) #21	NFE2L2 (ENSOCUG00000001009) #22	ENSOCUG00000002743	ENSOCUG00000030456	ENSOCUG00000025666	MTX2 (ENSOCUG00000008760) #23	HOXD1 (ENSOCUG00000015582)	HOXD3 (ENSOCUG00000014119) #24	HOXD4 (ENSOCUG00000002413) #25	ENSOCUG00000035940 #26	HOXD9 (ENSOCUG00000023956) #27	HOXD10 (ENSOCUG00000008964) #28	HOXD11 (ENSOCUG00000013942) #29	HOXD12 (ENSOCUG00000002412) #30	HOXD13 (ENSOCUG00000029547) #31	EVX2 (ENSOCUG00000032776)	LNPK (ENSOCUG00000008962) #32
Pika	MODERN SPECIES	6647													GUCA1A (ENSOPRG00000013964)	GUCA1ANB (ENSOPRG00000018852)	TAF8 (ENSOPRG00000013945)	NFE2L2 (ENSOPRG00000013934) #22
Tree shrew	MODERN SPECIES	650																NFE2L2 (ENSTBEG00000001588) #22