Euteleostomi	ANCESTRAL SPECIES	3	ENSGT01100000263532.A.a.b ##11	ENSGT00960000187365	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000157315	ENSGT00940000155029.c.a	ENSGT00940000155029.d	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32
Sarcopterygii	ANCESTRAL SPECIES	15	ENSGT01100000263532.A.a.a.a.b ##11	ENSGT01100000263532.C.c.b #11	ENSGT01100000263523.G.a.a ##8	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161503	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT01100000263523.G.a.a ##8	ENSGT01100000263523.H ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Amniota	ANCESTRAL SPECIES	6	ENSGT01100000263523.H ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00940000173501	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Mammalia	ANCESTRAL SPECIES	6	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.A #7	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00940000173501	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Theria	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00940000173501	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Eutheria	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Glires	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Rodentia	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263523.B #8	ENSGT01100000263523.A #7	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Myomorpha	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT01100000263523.B #8	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Lesser Egyptian jerboa	MODERN SPECIES	75	ENSJJAG00000020744 #7	ENSJJAG00000002374 #8	ENSJJAG00000002097 #9	ENSJJAG00000009117 #10	ENSJJAG00000015136 #11	Plekha3 (ENSJJAG00000021299) #12	Fkbp7 (ENSJJAG00000012221) #13	Pjvk (ENSJJAG00000012900) #14	Prkra (ENSJJAG00000013031) #15	Osbpl6 (ENSJJAG00000017863) #16	Rbm45 (ENSJJAG00000001312) #17	Pde11a (ENSJJAG00000018583) #18	ENSJJAG00000012087 #19	ENSJJAG00000014867 #20	Agps (ENSJJAG00000016720) #21	Nfe2l2 (ENSJJAG00000019899) #22	ENSJJAG00000000149 #23	ENSJJAG00000013228 #24	ENSJJAG00000019952 #25	Hoxd1 (ENSJJAG00000019059) #26	Hoxd10 (ENSJJAG00000011932) #27	Hoxd11 (ENSJJAG00000012344) #28	Hoxd12 (ENSJJAG00000016261) #29	Hoxd13 (ENSJJAG00000016388) #30	Evx2 (ENSJJAG00000017484) #31	Lnpk (ENSJJAG00000011710) #32	ENSJJAG00000013766 #33	Atp5g3 (ENSJJAG00000022403) #34	Atf2 (ENSJJAG00000015836) #35	Chn1 (ENSJJAG00000015001) #36	ENSJJAG00000014124 #37
Muroidea	ANCESTRAL SPECIES	34	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT01100000263523.B #8	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Cricetidae	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00900000143159 #9	ENSGT01100000263523.B #8	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001011105 #7	ENSCGRG00001011823 #10	ENSCGRG00001001535 #11	Plekha3 (ENSCGRG00001002827) #12	Fkbp7 (ENSCGRG00001004871) #13	Pjvk (ENSCGRG00001006219) #14	Prkra (ENSCGRG00001009200) #15	Osbpl6 (ENSCGRG00001002669) #16	Rbm45 (ENSCGRG00001005759) #17	Cyct (ENSCGRG00001008096)	Pde11a (ENSCGRG00001011422) #18	ENSCGRG00001003072	Ttc30a1 (ENSCGRG00001000892) #20	Ttc30b (ENSCGRG00001002157) #20	Agps (ENSCGRG00001003863) #21	Nfe2l2 (ENSCGRG00001005715) #22	ENSCGRG00001008592 ##23	ENSCGRG00001003235	Mtx2 (ENSCGRG00001014247) #24	ENSCGRG00001014512	Hoxd1 (ENSCGRG00001011572) #26	Hoxd3 (ENSCGRG00001011863)	Hoxd4 (ENSCGRG00001012360)	Hoxd8 (ENSCGRG00001013130)	Hoxd9 (ENSCGRG00001005991)	Hoxd10 (ENSCGRG00001008302) #27	Hoxd11 (ENSCGRG00001010386) #28	Hoxd12 (ENSCGRG00001000877) #29	Hoxd13 (ENSCGRG00001001661) #30	Evx2 (ENSCGRG00001003649) #31	ENSCGRG00001006802
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000001413	ENSMAUG00000016510 #7	ENSMAUG00000018214 #8	ENSMAUG00000018562 #9	ENSMAUG00000019513 #10	ENSMAUG00000018786 #11	Plekha3 (ENSMAUG00000019341) #12	Fkbp7 (ENSMAUG00000016606) #13	Pjvk (ENSMAUG00000018018) #14	Prkra (ENSMAUG00000019631) #15	Osbpl6 (ENSMAUG00000018609) #16	Rbm45 (ENSMAUG00000016948) #17	Cyct (ENSMAUG00000016722)	Pde11a (ENSMAUG00000021257) #18	Agps (ENSMAUG00000017317) #21	Nfe2l2 (ENSMAUG00000017700) #22	ENSMAUG00000017462	Mtx2 (ENSMAUG00000017870) #24	Hoxd1 (ENSMAUG00000018401) #26	Hoxd3 (ENSMAUG00000018318)	Hoxd4 (ENSMAUG00000018545)	Hoxd8 (ENSMAUG00000018092)	Hoxd9 (ENSMAUG00000018538)	Hoxd10 (ENSMAUG00000016731) #27	ENSMAUG00000020249 #28	Hoxd12 (ENSMAUG00000018416) #29	Hoxd13 (ENSMAUG00000017185) #30	Evx2 (ENSMAUG00000020383) #31	Lnpk (ENSMAUG00000018821) #32	ENSMAUG00000020495	Atp5g3 (ENSMAUG00000017685) #34
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00900000143154 #10	ENSGT01100000263523.A #7	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Prairie vole	MODERN SPECIES	12	ENSMOCG00000017985 #10	ENSMOCG00000017796 #8	ENSMOCG00000015811 #11	Plekha3 (ENSMOCG00000004146) #12	Fkbp7 (ENSMOCG00000008125) #13	Pjvk (ENSMOCG00000006830) #14	Prkra (ENSMOCG00000004548) #15	Osbpl6 (ENSMOCG00000017155) #16	Rbm45 (ENSMOCG00000017295) #17	Cyct (ENSMOCG00000021506)	Pde11a (ENSMOCG00000005959) #18	Ttc30a2 (ENSMOCG00000002802) #20	ENSMOCG00000001098	Ttc30b (ENSMOCG00000001580) #20	Agps (ENSMOCG00000017476) #21	Nfe2l2 (ENSMOCG00000020760) #22	ENSMOCG00000019409 ##23	Mtx2 (ENSMOCG00000017110) #24	Hoxd1 (ENSMOCG00000014086) #26	Hoxd4 (ENSMOCG00000013646)	Hoxd3 (ENSMOCG00000022552)	Hoxd8 (ENSMOCG00000022746)	Hoxd9 (ENSMOCG00000005870)	Hoxd10 (ENSMOCG00000006052) #27	Hoxd11 (ENSMOCG00000019226) #28	Hoxd12 (ENSMOCG00000018953) #29	Hoxd13 (ENSMOCG00000014618) #30	Evx2 (ENSMOCG00000010466) #31	Lnpk (ENSMOCG00000022345) #32	ENSMOCG00000012786 #34	Atf2 (ENSMOCG00000015301) #35
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000028754 ##11	ENSPEMG00000014359 #10	Ttn (ENSPEMG00000022085) #7	Plekha3 (ENSPEMG00000021541) #12	Fkbp7 (ENSPEMG00000011534) #13	Pjvk (ENSPEMG00000013970) #14	Prkra (ENSPEMG00000011967) #15	Osbpl6 (ENSPEMG00000010580) #16	Rbm45 (ENSPEMG00000002470) #17	Cyct (ENSPEMG00000028091)	Pde11a (ENSPEMG00000021597) #18	Ttc30a1 (ENSPEMG00000025624) #20	Ttc30b (ENSPEMG00000001902) #20	ENSPEMG00000023662	Agps (ENSPEMG00000010561) #21	Nfe2l2 (ENSPEMG00000023181) #22	Hnrnpa3 (ENSPEMG00000021885) ##23	Mtx2 (ENSPEMG00000022093) #24	Hoxd1 (ENSPEMG00000021389) #26	Hoxd3 (ENSPEMG00000028862)	Hoxd4 (ENSPEMG00000024627)	ENSPEMG00000029322	ENSPEMG00000028623	Hoxd9 (ENSPEMG00000006162)	Hoxd10 (ENSPEMG00000030445) #27	ENSPEMG00000018816 #28	Hoxd12 (ENSPEMG00000019240) #29	Hoxd13 (ENSPEMG00000022412) #30	Evx2 (ENSPEMG00000022145) #31	Lnpk (ENSPEMG00000017827) #32	ENSPEMG00000008662
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Mouse	MODERN SPECIES	11	Sestd1 (ENSMUSG00000042272)	Ccdc141 (ENSMUSG00000044033)	Ttn (ENSMUSG00000051747) #7	Plekha3 (ENSMUSG00000002733) #12	Fkbp7 (ENSMUSG00000002732) #13	Pjvk (ENSMUSG00000075267) #14	Prkra (ENSMUSG00000002731) #15	Osbpl6 (ENSMUSG00000042359) #16	Rbm45 (ENSMUSG00000042369) #17	Cyct (ENSMUSG00000056436)	Pde11a (ENSMUSG00000075270) #18	Ttc30a1 (ENSMUSG00000075271) #20	Ttc30a2 (ENSMUSG00000075272) #20	Ttc30b (ENSMUSG00000075273) #20	Agps (ENSMUSG00000042410) #21	Nfe2l2 (ENSMUSG00000015839) #22	Hnrnpa3 (ENSMUSG00000059005) ##23	Mtx2 (ENSMUSG00000027099) #24	Hoxd1 (ENSMUSG00000042448) #26	Hoxd4 (ENSMUSG00000101174)	Hoxd3 (ENSMUSG00000079277)	Hoxd8 (ENSMUSG00000027102)	Hoxd9 (ENSMUSG00000043342)	Hoxd10 (ENSMUSG00000050368) #27	Hoxd11 (ENSMUSG00000042499) #28	Hoxd12 (ENSMUSG00000001823) #29	Hoxd13 (ENSMUSG00000001819) #30	Evx2 (ENSMUSG00000001815) #31	Lnpk (ENSMUSG00000009207) #32	Atp5g3 (ENSMUSG00000018770) #34	Atf2 (ENSMUSG00000027104) #35
Mus_C	ANCESTRAL SPECIES		ENSGT00940000153458.B.f.e	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##23	ENSGT00940000153147.m.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Steppe mouse	MODERN SPECIES	3326																Nfe2l2 (ENSMSIG00000005673) #22	ENSMSIG00000005709 ##23	ENSMSIG00000005981	ENSMSIG00000006005	Mtx2 (ENSMSIG00000006053) #24	Hoxd1 (ENSMSIG00000006137) #26	Hoxd3 (ENSMSIG00000006158)	ENSMSIG00000006186	Hoxd8 (ENSMSIG00000006283)	Hoxd9 (ENSMSIG00000006304)	Hoxd10 (ENSMSIG00000006313) #27	Hoxd11 (ENSMSIG00000006326) #28	Hoxd12 (ENSMSIG00000006333) #29	Hoxd13 (ENSMSIG00000006348) #30	Evx2 (ENSMSIG00000006361) #31	Lnpk (ENSMSIG00000006386) #32
spretus	MODERN SPECIES	11	Ube2e3 (MGP_SPRETEiJ_G0024618)	Zfp385b (MGP_SPRETEiJ_G0024616)	Sestd1 (MGP_SPRETEiJ_G0024615)	Ccdc141 (MGP_SPRETEiJ_G0024614)	Ttn (MGP_SPRETEiJ_G0024613) #7	Plekha3 (MGP_SPRETEiJ_G0024612) #12	Fkbp7 (MGP_SPRETEiJ_G0024611) #13	Pjvk (MGP_SPRETEiJ_G0024610) #14	Prkra (MGP_SPRETEiJ_G0024609) #15	Osbpl6 (MGP_SPRETEiJ_G0024608) #16	Rbm45 (MGP_SPRETEiJ_G0024607) #17	Cyct (MGP_SPRETEiJ_G0024606)	Pde11a (MGP_SPRETEiJ_G0024605) #18	MGP_SPRETEiJ_G0024604 #20	Agps (MGP_SPRETEiJ_G0024603) #21	Nfe2l2 (MGP_SPRETEiJ_G0024602) #22	MGP_SPRETEiJ_G0024601 ##23	Mtx2 (MGP_SPRETEiJ_G0024600) #24	Hoxd1 (MGP_SPRETEiJ_G0024599) #26	MGP_SPRETEiJ_G0024598	Hoxd4 (MGP_SPRETEiJ_G0024597)	Hoxd3 (MGP_SPRETEiJ_G0024596)	Hoxd8 (MGP_SPRETEiJ_G0024595)	Hoxd9 (MGP_SPRETEiJ_G0024594)	Hoxd10 (MGP_SPRETEiJ_G0024593) #27	Hoxd11 (MGP_SPRETEiJ_G0024592) #28	Hoxd12 (MGP_SPRETEiJ_G0024591) #29	Hoxd13 (MGP_SPRETEiJ_G0024590) #30	Evx2 (MGP_SPRETEiJ_G0024589) #31	Lnpk (MGP_SPRETEiJ_G0024588) #32	Atp5g3 (MGP_SPRETEiJ_G0024587) #34
Ryukyu mouse	MODERN SPECIES	11	Sestd1 (MGP_CAROLIEiJ_G0023694)	Ccdc141 (MGP_CAROLIEiJ_G0023693)	Ttn (MGP_CAROLIEiJ_G0023692) #7	Plekha3 (MGP_CAROLIEiJ_G0023691) #12	Fkbp7 (MGP_CAROLIEiJ_G0023690) #13	Pjvk (MGP_CAROLIEiJ_G0023689) #14	Prkra (MGP_CAROLIEiJ_G0023688) #15	Osbpl6 (MGP_CAROLIEiJ_G0023687) #16	Rbm45 (MGP_CAROLIEiJ_G0023686) #17	Cyct (MGP_CAROLIEiJ_G0023685)	MGP_CAROLIEiJ_G0023684	Pde11a (MGP_CAROLIEiJ_G0023683) #18	MGP_CAROLIEiJ_G0023682 #20	MGP_CAROLIEiJ_G0023681 #20	Agps (MGP_CAROLIEiJ_G0023680) #21	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #22	MGP_CAROLIEiJ_G0023678 ##23	Mtx2 (MGP_CAROLIEiJ_G0023677) #24	Hoxd1 (MGP_CAROLIEiJ_G0023676) #26	MGP_CAROLIEiJ_G0023675	Hoxd4 (MGP_CAROLIEiJ_G0023674)	Hoxd3 (MGP_CAROLIEiJ_G0023673)	Hoxd8 (MGP_CAROLIEiJ_G0023672)	Hoxd9 (MGP_CAROLIEiJ_G0023671)	Hoxd10 (MGP_CAROLIEiJ_G0023670) #27	Hoxd11 (MGP_CAROLIEiJ_G0023669) #28	Hoxd12 (MGP_CAROLIEiJ_G0023668) #29	Hoxd13 (MGP_CAROLIEiJ_G0023667) #30	Evx2 (MGP_CAROLIEiJ_G0023666) #31	Lnpk (MGP_CAROLIEiJ_G0023665) #32	Atp5g3 (MGP_CAROLIEiJ_G0023664) #34
Shrew mouse	MODERN SPECIES	16	Zfp385b (MGP_PahariEiJ_G0025146)	Sestd1 (MGP_PahariEiJ_G0025145)	Ccdc141 (MGP_PahariEiJ_G0025144)	MGP_PahariEiJ_G0025143 #7	Plekha3 (MGP_PahariEiJ_G0025142) #12	Fkbp7 (MGP_PahariEiJ_G0025141) #13	Pjvk (MGP_PahariEiJ_G0025140) #14	Prkra (MGP_PahariEiJ_G0025139) #15	Osbpl6 (MGP_PahariEiJ_G0025138) #16	Rbm45 (MGP_PahariEiJ_G0025137) #17	Cyct (MGP_PahariEiJ_G0025136)	Pde11a (MGP_PahariEiJ_G0025135) #18	MGP_PahariEiJ_G0025134 #20	MGP_PahariEiJ_G0025133 #20	MGP_PahariEiJ_G0025132 #21	Nfe2l2 (MGP_PahariEiJ_G0025131) #22	Hnrnpa3 (MGP_PahariEiJ_G0025130) ##23	Mtx2 (MGP_PahariEiJ_G0025129) #24	Hoxd1 (MGP_PahariEiJ_G0025128) #26	MGP_PahariEiJ_G0025127	Hoxd4 (MGP_PahariEiJ_G0025126)	Hoxd3 (MGP_PahariEiJ_G0025125)	Hoxd8 (MGP_PahariEiJ_G0025124)	Hoxd9 (MGP_PahariEiJ_G0025123)	Hoxd10 (MGP_PahariEiJ_G0025122) #27	Hoxd11 (MGP_PahariEiJ_G0025121) #28	Hoxd12 (MGP_PahariEiJ_G0025120) #29	Hoxd13 (MGP_PahariEiJ_G0025119) #30	Evx2 (MGP_PahariEiJ_G0025118) #31	Lnpk (MGP_PahariEiJ_G0025117) #32	Atp5g3 (MGP_PahariEiJ_G0025116) #34
Rat	MODERN SPECIES	13	Sestd1 (ENSRNOG00000012603)	Ccdc141 (ENSRNOG00000012580)	Ttn (ENSRNOG00000069271) #7	Plekha3 (ENSRNOG00000011830) #12	Fkbp7 (ENSRNOG00000011758) #13	Pjvk (ENSRNOG00000038165) #14	Prkra (ENSRNOG00000011195) #15	Osbpl6 (ENSRNOG00000010812) #16	Rbm45 (ENSRNOG00000010595) #17	Cyct (ENSRNOG00000024457) #18	Ttc30a (ENSRNOG00000069321) #20	Ttc30a1 (ENSRNOG00000052519) #20	Ttc30b (ENSRNOG00000059460) #20	Agps (ENSRNOG00000001547) #21	ENSRNOG00000066660	Nfe2l2 (ENSRNOG00000001548) #22	Hnrnpa3 (ENSRNOG00000052968) ##23	Mtx2 (ENSRNOG00000001559) #24	Hoxd1 (ENSRNOG00000001572) #26	Hoxd3 (ENSRNOG00000001577)	AABR07052559.1 (ENSRNOG00000053144)	Hoxd4 (ENSRNOG00000001578)	Hoxd8 (ENSRNOG00000071108)	Hoxd9 (ENSRNOG00000001580)	Hoxd10 (ENSRNOG00000001581) #27	Hoxd11 (ENSRNOG00000069591) #28	Hoxd12 (ENSRNOG00000001587) #29	Hoxd13 (ENSRNOG00000001588) #30	Evx2 (ENSRNOG00000001589) #31	Lnpk (ENSRNOG00000001593) #32	Atp5mc3 (ENSRNOG00000001596) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	ENSNGAG00000022834 #9	ENSNGAG00000021249 #10	ENSNGAG00000016600 #8	ENSNGAG00000021911 #7	Plekha3 (ENSNGAG00000020579) #12	Fkbp7 (ENSNGAG00000022641) #13	Pjvk (ENSNGAG00000022020) #14	Prkra (ENSNGAG00000021816) #15	Osbpl6 (ENSNGAG00000014527) #16	Rbm45 (ENSNGAG00000023886) #17	ENSNGAG00000021016	Cyct (ENSNGAG00000023547)	Pde11a (ENSNGAG00000023493) #18	ENSNGAG00000022555 #20	Agps (ENSNGAG00000020263) #21	Nfe2l2 (ENSNGAG00000022809) #22	ENSNGAG00000021745 ##23	Mtx2 (ENSNGAG00000020555) #24	Hoxd1 (ENSNGAG00000021714) #26	Hoxd3 (ENSNGAG00000021055)	Hoxd4 (ENSNGAG00000020270)	Hoxd8 (ENSNGAG00000011799)	Hoxd9 (ENSNGAG00000011105)	Hoxd10 (ENSNGAG00000023868) #27	Hoxd11 (ENSNGAG00000023438) #28	Hoxd12 (ENSNGAG00000023455) #29	Hoxd13 (ENSNGAG00000023727) #30	Evx2 (ENSNGAG00000023877) #31	Lnpk (ENSNGAG00000023466) #32	Atp5g3 (ENSNGAG00000004748) #34	Atf2 (ENSNGAG00000003870) #35
Kangaroo rat	MODERN SPECIES	324	Sestd1 (ENSDORG00000012622)	ENSDORG00000027337	ENSDORG00000029701 #7	ENSDORG00000029166 #11	Plekha3 (ENSDORG00000015344) #12	Fkbp7 (ENSDORG00000013340) #13	Pjvk (ENSDORG00000013339) #14	Prkra (ENSDORG00000013338) #15	Osbpl6 (ENSDORG00000001912) #16	Rbm45 (ENSDORG00000015831) #17	Cyct (ENSDORG00000004101)	ENSDORG00000023150 #20	ENSDORG00000028697 #20	ENSDORG00000028567 #20	Agps (ENSDORG00000006480) #21	Nfe2l2 (ENSDORG00000030173) #22	Hnrnpa3 (ENSDORG00000011155) #23	Mtx2 (ENSDORG00000003848) #24	Hoxd1 (ENSDORG00000009445) #26	Hoxd3 (ENSDORG00000029389)	Hoxd4 (ENSDORG00000028681)	ENSDORG00000027655	Hoxd10 (ENSDORG00000009436) #27	ENSDORG00000029219 #28	Hoxd12 (ENSDORG00000009434) #29	Evx2 (ENSDORG00000009432) #31	Lnpk (ENSDORG00000015736) #32	Atp5g3 (ENSDORG00000012973) #34	Atf2 (ENSDORG00000024409) #35	Chn1 (ENSDORG00000002182) #36	Chrna1 (ENSDORG00000001136)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT01100000263523.A #7	ENSGT01100000263523.B #8	ENSGT00900000143159 #9	ENSGT00900000143154 #10	ENSGT00920000150542	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000014023 #9	ENSCLAG00000015797 #10	ENSCLAG00000015650	ENSCLAG00000016023 #11	PLEKHA3 (ENSCLAG00000014135) #12	PRKRA (ENSCLAG00000010338) #15	PJVK (ENSCLAG00000010713) #14	OSBPL6 (ENSCLAG00000011433) #16	RBM45 (ENSCLAG00000015215) #17	PDE11A (ENSCLAG00000013013) #18	ENSCLAG00000013714 #20	ENSCLAG00000017938 #20	AGPS (ENSCLAG00000013279) #21	ENSCLAG00000013627	ENSCLAG00000012626	NFE2L2 (ENSCLAG00000013122) #22	HNRNPA3 (ENSCLAG00000012855) #23	ENSCLAG00000011088	MTX2 (ENSCLAG00000011598) #24	HOXD1 (ENSCLAG00000012505) #26	ENSCLAG00000013605	HOXD4 (ENSCLAG00000014461)	ENSCLAG00000011108	HOXD9 (ENSCLAG00000012447)	HOXD10 (ENSCLAG00000012482) #27	ENSCLAG00000012563 #28	HOXD12 (ENSCLAG00000013058) #29	HOXD13 (ENSCLAG00000013095) #30	EVX2 (ENSCLAG00000014389) #31	LNPK (ENSCLAG00000015033) #32	TRIML1 (ENSCLAG00000014494)
Degu	MODERN SPECIES	106	ENSODEG00000007812 #10	ENSODEG00000008370	ENSODEG00000008948 #11	PLEKHA3 (ENSODEG00000007880) #12	ENSODEG00000008149 #13	PJVK (ENSODEG00000008177) #14	ENSODEG00000008743 #15	OSBPL6 (ENSODEG00000009667) #16	ENSODEG00000019659	RBM45 (ENSODEG00000007959) #17	ENSODEG00000019574	PDE11A (ENSODEG00000010682) #18	ENSODEG00000019592 #20	ENSODEG00000020058 #20	AGPS (ENSODEG00000008272) #21	NFE2L2 (ENSODEG00000010043) #22	ENSODEG00000009265	ENSODEG00000009697	MTX2 (ENSODEG00000008062) #24	ENSODEG00000008879	HOXD1 (ENSODEG00000008961) #26	HOXD3 (ENSODEG00000009722)	HOXD4 (ENSODEG00000010297)	ENSODEG00000010496	HOXD9 (ENSODEG00000008626)	HOXD10 (ENSODEG00000010382) #27	ENSODEG00000010934 #28	HOXD12 (ENSODEG00000008376) #29	HOXD13 (ENSODEG00000008793) #30	EVX2 (ENSODEG00000010771) #31	ENSODEG00000008992
Guinea pig	MODERN SPECIES	3	CCDC141 (ENSCPOG00000003955)	ENSCPOG00000032370 #7	ENSCPOG00000030784 #8	ENSCPOG00000038729	ENSCPOG00000034673	ENSCPOG00000036479 #11	PLEKHA3 (ENSCPOG00000003906) #12	FKBP7 (ENSCPOG00000037159) #13	PJVK (ENSCPOG00000037882) #14	ENSCPOG00000003900 #15	OSBPL6 (ENSCPOG00000002816) #16	RBM45 (ENSCPOG00000000684) #17	PDE11A (ENSCPOG00000000682) #18	ENSCPOG00000000681 #20	AGPS (ENSCPOG00000000679) #21	NFE2L2 (ENSCPOG00000031261) #22	ENSCPOG00000004251 #23	ENSCPOG00000027250	MTX2 (ENSCPOG00000011099) #24	HOXD1 (ENSCPOG00000005509) #26	HOXD3 (ENSCPOG00000034932)	HOXD4 (ENSCPOG00000036552)	HOXD8 (ENSCPOG00000015005)	HOXD9 (ENSCPOG00000015006)	HOXD10 (ENSCPOG00000011368) #27	ENSCPOG00000019766 #28	HOXD12 (ENSCPOG00000005496) #29	HOXD13 (ENSCPOG00000006722) #30	EVX2 (ENSCPOG00000006711) #31	LNPK (ENSCPOG00000010971) #32	ATP5MC3 (ENSCPOG00000040161) #34
Naked mole-rat female	MODERN SPECIES	22	CCDC141 (ENSHGLG00000002888)	TTN (ENSHGLG00000036835) #7	ENSHGLG00000018641 #12	FKBP7 (ENSHGLG00000019268) #13	PJVK (ENSHGLG00000011003) #14	ENSHGLG00000010663 #15	ENSHGLG00000003065 #16	ENSHGLG00000040220	ENSHGLG00000045276	ENSHGLG00000007342 #17	ENSHGLG00000006609	ENSHGLG00000005226 #18	TTC30B (ENSHGLG00000042840) #20	ENSHGLG00000036841 #20	AGPS (ENSHGLG00000007541) #21	NFE2L2 (ENSHGLG00000006475) #22	HNRNPA3 (ENSHGLG00000005451) #23	ENSHGLG00000036655	ENSHGLG00000046644	ENSHGLG00000012734	MTX2 (ENSHGLG00000004177) #24	HOXD1 (ENSHGLG00000004072) #26	HOXD3 (ENSHGLG00000003761)	HOXD4 (ENSHGLG00000037842)	ENSHGLG00000003577	HOXD10 (ENSHGLG00000033462) #27	HOXD9 (ENSHGLG00000007185)	HOXD11 (ENSHGLG00000034527) #28	HOXD12 (ENSHGLG00000005403) #29	HOXD13 (ENSHGLG00000050884) #30	EVX2 (ENSHGLG00000004218) #31
Sciuridae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.xb #34	ENSGT00940000156582 #35
Marmotini	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.xb.a #34	ENSGT00940000156582 #35
Alpin marmot	MODERN SPECIES	5															AGPS (ENSMMMG00000023778) #21	NFE2L2 (ENSMMMG00000023776) #22	MTX2 (ENSMMMG00000023772) #24	HOXD3 (ENSMMMG00000023768)	HOXD4 (ENSMMMG00000023767)	ENSMMMG00000023765	HOXD9 (ENSMMMG00000023764)	HOXD10 (ENSMMMG00000023763) #27	ENSMMMG00000023762 #28	HOXD12 (ENSMMMG00000023760) #29	HOXD13 (ENSMMMG00000023759) #30	LNPK (ENSMMMG00000023755) #32	ENSMMMG00000023748 #34	ATF2 (ENSMMMG00000023733) #35	ENSMMMG00000023730	CHN1 (ENSMMMG00000023718) #36	CHRNA1 (ENSMMMG00000023717)
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.xb.a #34	ENSGT00940000156582 #35
Arctic ground squirrel	MODERN SPECIES	96	ENSUPAG00010005828 ##11	ENSUPAG00010005845 ##11	ENSUPAG00010005849 ##11	ENSUPAG00010005854 #10	ENSUPAG00010005857 #11	PLEKHA3 (ENSUPAG00010005864) #12	FKBP7 (ENSUPAG00010005868) #13	PJVK (ENSUPAG00010005878) #14	PRKRA (ENSUPAG00010005881) #15	OSBPL6 (ENSUPAG00010005891) #16	RBM45 (ENSUPAG00010006036) #17	ENSUPAG00010006054	PDE11A (ENSUPAG00010006062) #18	ENSUPAG00010006082 #20	AGPS (ENSUPAG00010006084) #21	NFE2L2 (ENSUPAG00010006108) #22	HNRNPA3 (ENSUPAG00010006133) #23
Squirrel	MODERN SPECIES	109	ENSSTOG00000034976 ##11	ENSSTOG00000033165 #9	ENSSTOG00000032305 #10	ENSSTOG00000032899 #8	ENSSTOG00000006208 #11	PLEKHA3 (ENSSTOG00000006191) #12	FKBP7 (ENSSTOG00000006176) #13	PJVK (ENSSTOG00000028411) #14	PRKRA (ENSSTOG00000006156) #15	OSBPL6 (ENSSTOG00000006092) #16	RBM45 (ENSSTOG00000002708) #17	ENSSTOG00000008853	PDE11A (ENSSTOG00000012639) #18	ENSSTOG00000003267 #20	AGPS (ENSSTOG00000012623) #21	NFE2L2 (ENSSTOG00000000313) #22	HNRNPA3 (ENSSTOG00000025125) #23	ENSSTOG00000030884	MTX2 (ENSSTOG00000014688) #24	HOXD1 (ENSSTOG00000012230) #26	HOXD3 (ENSSTOG00000014680)	HOXD4 (ENSSTOG00000029055)	ENSSTOG00000023453	HOXD9 (ENSSTOG00000026761)	HOXD10 (ENSSTOG00000003935) #27	HOXD12 (ENSSTOG00000004918) #29	HOXD13 (ENSSTOG00000004117) #30	EVX2 (ENSSTOG00000014512) #31	LNPK (ENSSTOG00000014498) #32	ENSSTOG00000013572 #34	ATF2 (ENSSTOG00000014079) #35
Eurasian red squirrel	MODERN SPECIES	12	CCDC141 (ENSSVLG00005020180)	ENSSVLG00005008368 ##11	PLEKHA3 (ENSSVLG00005005206) #12	FKBP7 (ENSSVLG00005005181) #13	ENSSVLG00005005163	PJVK (ENSSVLG00005005095) #14	PRKRA (ENSSVLG00005005027) #15	OSBPL6 (ENSSVLG00005004465) #16	RBM45 (ENSSVLG00005004137) #17	ENSSVLG00005004113	PDE11A (ENSSVLG00005004050) #18	ENSSVLG00005004018 #20	ENSSVLG00005004006 #20	ENSSVLG00005003996 #20	AGPS (ENSSVLG00005003959) #21	ENSSVLG00005003903 #22	ENSSVLG00005003881 #23	MTX2 (ENSSVLG00005003812) #24	HOXD1 (ENSSVLG00005003762) #26	HOXD4 (ENSSVLG00005003676)	HOXD8 (ENSSVLG00005003645)	HOXD9 (ENSSVLG00005003618)	HOXD10 (ENSSVLG00005003599) #27	HOXD11 (ENSSVLG00005003581) #28	HOXD12 (ENSSVLG00005003565) #29	HOXD13 (ENSSVLG00005003554) #30	EVX2 (ENSSVLG00005003539) #31	LNPK (ENSSVLG00005003500) #32	ENSSVLG00005003466	ENSSVLG00005003430 #34	ENSSVLG00005003279 #35
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.B ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.K ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Rabbit	MODERN SPECIES	18	ENSOCUG00000035152 ##11	ENSOCUG00000033996 ##8	ENSOCUG00000016777 ##8	PLEKHA3 (ENSOCUG00000005495) #12	FKBP7 (ENSOCUG00000024679) #13	PJVK (ENSOCUG00000005493) #14	PRKRA (ENSOCUG00000005489) #15	OSBPL6 (ENSOCUG00000004078) #16	RBM45 (ENSOCUG00000001125) #17	ENSOCUG00000025342	ENSOCUG00000039559	ENSOCUG00000008038	ENSOCUG00000039012 #20	ENSOCUG00000029884 #20	AGPS (ENSOCUG00000011521) #21	NFE2L2 (ENSOCUG00000001009) #22	ENSOCUG00000002743 #23	ENSOCUG00000030456	ENSOCUG00000025666	MTX2 (ENSOCUG00000008760) #24	HOXD1 (ENSOCUG00000015582) #26	HOXD3 (ENSOCUG00000014119)	HOXD4 (ENSOCUG00000002413)	ENSOCUG00000035940	HOXD9 (ENSOCUG00000023956)	HOXD10 (ENSOCUG00000008964) #27	HOXD11 (ENSOCUG00000013942) #28	HOXD12 (ENSOCUG00000002412) #29	HOXD13 (ENSOCUG00000029547) #30	EVX2 (ENSOCUG00000032776) #31	LNPK (ENSOCUG00000008962) #32
Pika	MODERN SPECIES	6647													GUCA1A (ENSOPRG00000013964)	GUCA1ANB (ENSOPRG00000018852)	TAF8 (ENSOPRG00000013945)	NFE2L2 (ENSOPRG00000013934) #22
Tree shrew	MODERN SPECIES	650																NFE2L2 (ENSTBEG00000001588) #22
Primates	ANCESTRAL SPECIES	13	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.F ##8	ENSGT01100000263523.L ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Catarrhini	ANCESTRAL SPECIES	16	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.F ##8	ENSGT01100000263523.L ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00950000182922.a.a.a.b.a.a.b.b
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000168702	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32
Pig-tailed macaque	MODERN SPECIES	585												PDE11A (ENSMNEG00000037080) #18	TTC30A (ENSMNEG00000000192) #20	TTC30B (ENSMNEG00000011632) #20	AGPS (ENSMNEG00000043672) #21	NFE2L2 (ENSMNEG00000028208) #22	ENSMNEG00000034936 ##23	ENSMNEG00000026533	MTX2 (ENSMNEG00000032881) #24	HOXD1 (ENSMNEG00000010514) #26	ENSMNEG00000018849	HOXD3 (ENSMNEG00000040202)	HOXD4 (ENSMNEG00000030845)	HOXD8 (ENSMNEG00000028133)	HOXD9 (ENSMNEG00000044938)	HOXD10 (ENSMNEG00000033923) #27	HOXD11 (ENSMNEG00000029127) #28	HOXD12 (ENSMNEG00000002891) #29	HOXD13 (ENSMNEG00000027142) #30	EVX2 (ENSMNEG00000028323) #31	ENSMNEG00000024050
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000168702	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000170471.B.a.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31
Crab-eating macaque	MODERN SPECIES	3	SESTD1 (ENSMFAG00000013388)	CCDC141 (ENSMFAG00000000963)	ENSMFAG00000063214 #7	PLEKHA3 (ENSMFAG00000031192) #12	FKBP7 (ENSMFAG00000034329) #13	PJVK (ENSMFAG00000001249) #14	PRKRA (ENSMFAG00000040213) #15	OSBPL6 (ENSMFAG00000003510) #16	ENSMFAG00000060300	RBM45 (ENSMFAG00000042524) #17	ENSMFAG00000034055	PDE11A (ENSMFAG00000042268) #18	TTC30A (ENSMFAG00000053112) #20	TTC30B (ENSMFAG00000057741) #20	AGPS (ENSMFAG00000038904) #21	NFE2L2 (ENSMFAG00000041108) #22	HNRNPA3 (ENSMFAG00000000823) #23	ENSMFAG00000058081	ENSMFAG00000065500	MTX2 (ENSMFAG00000026822) #24	HOXD1 (ENSMFAG00000046035) #26	ENSMFAG00000047422	HOXD3 (ENSMFAG00000034065)	HOXD4 (ENSMFAG00000052240)	HOXD8 (ENSMFAG00000065214)	HOXD9 (ENSMFAG00000000099)	HOXD10 (ENSMFAG00000031117) #27	ENSMFAG00000043724 #28	HOXD12 (ENSMFAG00000051547) #29	HOXD13 (ENSMFAG00000033237) #30	ENSMFAG00000053875
Rhesus	MODERN SPECIES	3	ZNF385B (ENSMMUG00000003855)	SESTD1 (ENSMMUG00000019690)	ENSMMUG00000019689	TTN (ENSMMUG00000009038) #7	PLEKHA3 (ENSMMUG00000002189) #12	FKBP7 (ENSMMUG00000002187) #13	PJVK (ENSMMUG00000054264) #14	PRKRA (ENSMMUG00000002185) #15	OSBPL6 (ENSMMUG00000002183) #16	RBM45 (ENSMMUG00000002013) #17	PDE11A (ENSMMUG00000002011) #18	TTC30A (ENSMMUG00000041827) #20	TTC30B (ENSMMUG00000043597) #20	AGPS (ENSMMUG00000008502) #21	ENSMMUG00000065205	NFE2L2 (ENSMMUG00000001861) #22	HNRNPA3 (ENSMMUG00000001858) #23	ENSMMUG00000062299	ENSMMUG00000054983	ENSMMUG00000031367	MTX2 (ENSMMUG00000010185) #24	HOXD1 (ENSMMUG00000065344) #26	ENSMMUG00000052177	HOXD3 (ENSMMUG00000051761)	HOXD4 (ENSMMUG00000060947)	HOXD8 (ENSMMUG00000023504)	HOXD9 (ENSMMUG00000032599)	HOXD10 (ENSMMUG00000046368) #27	HOXD11 (ENSMMUG00000047915) #28	HOXD12 (ENSMMUG00000023501) #29	HOXD13 (ENSMMUG00000055831) #30
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00950000182922.a.a.a.b.a.a.b.b
Olive baboon	MODERN SPECIES	1	SESTD1 (ENSPANG00000020529)	CCDC141 (ENSPANG00000006772)	TTN (ENSPANG00000022292) #7	PLEKHA3 (ENSPANG00000013332) #12	FKBP7 (ENSPANG00000019540) #13	PJVK (ENSPANG00000014211) #14	PRKRA (ENSPANG00000001046) #15	OSBPL6 (ENSPANG00000016378) #16	ENSPANG00000046096	RBM45 (ENSPANG00000016088) #17	ENSPANG00000029672	PDE11A (ENSPANG00000025222) #18	TTC30A (ENSPANG00000041839) #20	TTC30B (ENSPANG00000046724) #20	AGPS (ENSPANG00000004764) #21	NFE2L2 (ENSPANG00000039361) #22	ENSPANG00000018337 #23	ENSPANG00000045287	MTX2 (ENSPANG00000013333) #24	HOXD1 (ENSPANG00000009593) #26	HOXD3 (ENSPANG00000000543)	HOXD4 (ENSPANG00000000542)	HOXD8 (ENSPANG00000049199)	HOXD9 (ENSPANG00000001061)	HOXD10 (ENSPANG00000050198) #27	HOXD11 (ENSPANG00000049530) #28	ENSPANG00000044332 #29	ENSPANG00000044695 #30	ENSPANG00000039545 #31	LNPK (ENSPANG00000011787) #32	ATP5MC3 (ENSPANG00000031591) #34
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00950000182922.a.a.a.b.a.a.b.b
Sooty mangabey	MODERN SPECIES	570	SESTD1 (ENSCATG00000024404)	CCDC141 (ENSCATG00000030397)	TTN (ENSCATG00000041967) #7	PLEKHA3 (ENSCATG00000038850) #12	FKBP7 (ENSCATG00000037065) #13	PJVK (ENSCATG00000035539) #14	PRKRA (ENSCATG00000032736) #15	OSBPL6 (ENSCATG00000040355) #16	RBM45 (ENSCATG00000041082) #17	ENSCATG00000039319	ENSCATG00000008317	PDE11A (ENSCATG00000042325) #18	TTC30A (ENSCATG00000000123) #20	TTC30B (ENSCATG00000004635) #20	AGPS (ENSCATG00000038387) #21	NFE2L2 (ENSCATG00000036834) #22	ENSCATG00000001855	HNRNPA3 (ENSCATG00000032162) #23	ENSCATG00000022731	MTX2 (ENSCATG00000039959) #24	HOXD1 (ENSCATG00000032397) #26	ENSCATG00000032250	HOXD3 (ENSCATG00000029355)	HOXD4 (ENSCATG00000041719)	HOXD8 (ENSCATG00000032148)	HOXD9 (ENSCATG00000037190)	HOXD11 (ENSCATG00000031157) #28	HOXD10 (ENSCATG00000032256) #27	HOXD12 (ENSCATG00000032043) #29	HOXD13 (ENSCATG00000031889) #30	EVX2 (ENSCATG00000038250) #31
Drill	MODERN SPECIES	1072			ENSMLEG00000034299 ##8	PLEKHA3 (ENSMLEG00000030446) #12	FKBP7 (ENSMLEG00000015651) #13	PJVK (ENSMLEG00000027972) #14	PRKRA (ENSMLEG00000019578) #15	OSBPL6 (ENSMLEG00000021439) #16	RBM45 (ENSMLEG00000042404) #17	PDE11A (ENSMLEG00000044286) #18	ENSMLEG00000035955	ENSMLEG00000039892	TTC30A (ENSMLEG00000027775) #20	TTC30B (ENSMLEG00000027894) #20	AGPS (ENSMLEG00000033858) #21	NFE2L2 (ENSMLEG00000042705) #22	MTX2 (ENSMLEG00000002029) #24	HOXD1 (ENSMLEG00000035890) #26	HOXD3 (ENSMLEG00000037278)	HOXD4 (ENSMLEG00000024188)	ENSMLEG00000042507	HOXD9 (ENSMLEG00000025695)	HOXD10 (ENSMLEG00000044067) #27	ENSMLEG00000030792 #28	HOXD12 (ENSMLEG00000032533) #29	HOXD13 (ENSMLEG00000031532) #30	EVX2 (ENSMLEG00000035528) #31	LNPK (ENSMLEG00000033659) #32	ENSMLEG00000001270	ATP5MC3 (ENSMLEG00000043816) #34	ATF2 (ENSMLEG00000035167) #35
Vervet Monkey	MODERN SPECIES	1	UBE2E3 (ENSCSAG00000012910)	CWC22 (ENSCSAG00000012925)	ZNF385B (ENSCSAG00000012932)	SESTD1 (ENSCSAG00000012944)	CCDC141 (ENSCSAG00000012957)	TTN (ENSCSAG00000013817) #7	PLEKHA3 (ENSCSAG00000014182) #12	FKBP7 (ENSCSAG00000014194) #13	PJVK (ENSCSAG00000014212) #14	OSBPL6 (ENSCSAG00000014221) #16	RBM45 (ENSCSAG00000014231) #17	ENSCSAG00000014240	PDE11A (ENSCSAG00000014313) #18	TTC30A (ENSCSAG00000018651) #20	AGPS (ENSCSAG00000014345) #21	NFE2L2 (ENSCSAG00000014353) #22	ENSCSAG00000014399 #23	MTX2 (ENSCSAG00000014412) #24	HOXD1 (ENSCSAG00000014419) #26	HOXD3 (ENSCSAG00000014422)	HOXD4 (ENSCSAG00000014429)	HOXD8 (ENSCSAG00000014437)	HOXD9 (ENSCSAG00000014441)	HOXD10 (ENSCSAG00000014448) #27	HOXD11 (ENSCSAG00000014457) #28	HOXD12 (ENSCSAG00000014464) #29	HOXD13 (ENSCSAG00000014475) #30	EVX2 (ENSCSAG00000014486) #31	LNPK (ENSCSAG00000014506) #32	ATF2 (ENSCSAG00000014523) #35	CHN1 (ENSCSAG00000014539) #36
Rhinopithecus	ANCESTRAL SPECIES	148	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000168702	ENSGT00910000148248	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00960000186717.a	ENSGT00940000154301.`b.a	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31
Golden snub-nosed monkey	MODERN SPECIES	722	CWC22 (ENSRROG00000037520)	ZNF385B (ENSRROG00000003706)	SESTD1 (ENSRROG00000029348)	CCDC141 (ENSRROG00000037411)	TTN (ENSRROG00000045525) #7	PLEKHA3 (ENSRROG00000041107) #12	FKBP7 (ENSRROG00000020947) #13	PJVK (ENSRROG00000007464) #14	PRKRA (ENSRROG00000035389) #15	OSBPL6 (ENSRROG00000036096) #16	RBM45 (ENSRROG00000031398) #17	ENSRROG00000041594	PDE11A (ENSRROG00000028809) #18	TTC30A (ENSRROG00000023478) #20	AGPS (ENSRROG00000035068) #21	NFE2L2 (ENSRROG00000045317) #22	ENSRROG00000028794 #23	MTX2 (ENSRROG00000030249) #24	ENSRROG00000020854	ENSRROG00000042876	ENSRROG00000038369	HOXD1 (ENSRROG00000035364) #26	HOXD3 (ENSRROG00000044509)	HOXD4 (ENSRROG00000026646)	ENSRROG00000024611	HOXD10 (ENSRROG00000036162) #27	HOXD9 (ENSRROG00000032216)	ENSRROG00000043226 #28	HOXD12 (ENSRROG00000043268) #29	HOXD13 (ENSRROG00000040419) #30	EVX2 (ENSRROG00000044705) #31
Black snub-nosed monkey	MODERN SPECIES	241	ENSRBIG00000043799 #7	ENSRBIG00000037878 ##11	ENSRBIG00000029254 #7	PLEKHA3 (ENSRBIG00000003168) #12	FKBP7 (ENSRBIG00000040596) #13	PJVK (ENSRBIG00000034251) #14	ENSRBIG00000014635	PRKRA (ENSRBIG00000035301) #15	OSBPL6 (ENSRBIG00000040280) #16	RBM45 (ENSRBIG00000033680) #17	PDE11A (ENSRBIG00000043623) #18	ENSRBIG00000035583	ENSRBIG00000030274	TTC30A (ENSRBIG00000041155) #20	AGPS (ENSRBIG00000039582) #21	NFE2L2 (ENSRBIG00000042825) #22	ENSRBIG00000012615 ##23	MTX2 (ENSRBIG00000043097) #24	ENSRBIG00000042767	ENSRBIG00000032024	HOXD1 (ENSRBIG00000031297) #26	HOXD3 (ENSRBIG00000044829)	HOXD4 (ENSRBIG00000027637)	HOXD8 (ENSRBIG00000036417)	HOXD9 (ENSRBIG00000035340)	HOXD10 (ENSRBIG00000030470) #27	HOXD12 (ENSRBIG00000040792) #29	ENSRBIG00000035253 #28	HOXD13 (ENSRBIG00000033719) #30	LNPK (ENSRBIG00000038235) #32	ENSRBIG00000038159
Hominoidea	ANCESTRAL SPECIES	15	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.F ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31
Hominidae	ANCESTRAL SPECIES	17	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32
Pan	ANCESTRAL SPECIES	12	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618.o.b #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #18	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00910000147400	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32
Bonobo	MODERN SPECIES	15	ENSPPAG00000026551	ENSPPAG00000037260 ##11	ENSPPAG00000034897 #7	PLEKHA3 (ENSPPAG00000036608) #12	FKBP7 (ENSPPAG00000043985) #13	PJVK (ENSPPAG00000037654) #14	PRKRA (ENSPPAG00000043306) #15	OSBPL6 (ENSPPAG00000025663) #16	RBM45 (ENSPPAG00000026278) #17	ENSPPAG00000035494	ENSPPAG00000029280	PDE11A (ENSPPAG00000036387) #18	TTC30A (ENSPPAG00000023829) #20	TTC30B (ENSPPAG00000019313) #20	AGPS (ENSPPAG00000036868) #21	NFE2L2 (ENSPPAG00000037501) #22	HNRNPA3 (ENSPPAG00000023768) #23	ENSPPAG00000012679	MTX2 (ENSPPAG00000043265) #24	ENSPPAG00000025118	ENSPPAG00000031665 #26	ENSPPAG00000013988	HOXD3 (ENSPPAG00000031713)	HOXD4 (ENSPPAG00000034992)	ENSPPAG00000034189	HOXD9 (ENSPPAG00000039242)	HOXD10 (ENSPPAG00000036046) #27	ENSPPAG00000028125 #28	HOXD12 (ENSPPAG00000017089) #29	ENSPPAG00000010483 #30	ENSPPAG00000039855 #31
Chimpanzee	MODERN SPECIES	15	SESTD1 (ENSPTRG00000012695)	CCDC141 (ENSPTRG00000012693)	TTN (ENSPTRG00000012691) #7	PLEKHA3 (ENSPTRG00000012690) #12	FKBP7 (ENSPTRG00000012689) #13	PJVK (ENSPTRG00000029126) #14	PRKRA (ENSPTRG00000012688) #15	OSBPL6 (ENSPTRG00000012687) #16	RBM45 (ENSPTRG00000012686) #17	ENSPTRG00000051577	ENSPTRG00000046153	PDE11A (ENSPTRG00000012684) #18	TTC30A (ENSPTRG00000044238) #20	TTC30B (ENSPTRG00000048299) #20	AGPS (ENSPTRG00000012680) #21	NFE2L2 (ENSPTRG00000012677) #22	HNRNPA3 (ENSPTRG00000012676) #23	ENSPTRG00000042815	MTX2 (ENSPTRG00000012674) #24	ENSPTRG00000023851	HOXD1 (ENSPTRG00000052716) #26	ENSPTRG00000051348	HOXD3 (ENSPTRG00000012672)	HOXD4 (ENSPTRG00000051862)	HOXD8 (ENSPTRG00000012669)	HOXD9 (ENSPTRG00000043464)	HOXD10 (ENSPTRG00000012667) #27	HOXD11 (ENSPTRG00000012666) #28	HOXD12 (ENSPTRG00000012665) #29	HOXD13 (ENSPTRG00000012664) #30	EVX2 (ENSPTRG00000012663) #31
Human	MODERN SPECIES	11	CWC22 (ENSG00000163510)	ZNF385B (ENSG00000144331)	SESTD1 (ENSG00000187231)	CCDC141 (ENSG00000163492)	TTN (ENSG00000155657) #7	PLEKHA3 (ENSG00000116095) #12	FKBP7 (ENSG00000079150) #13	PJVK (ENSG00000204311) #14	PRKRA (ENSG00000180228) #15	OSBPL6 (ENSG00000079156) #16	RBM45 (ENSG00000155636) #17	PDE11A (ENSG00000128655) #18	TTC30A (ENSG00000197557) #20	TTC30B (ENSG00000196659) #20	AGPS (ENSG00000018510) #21	NFE2L2 (ENSG00000116044) #22	HNRNPA3 (ENSG00000170144) #23	MTX2 (ENSG00000128654) #24	HOXD1 (ENSG00000128645) #26	HOXD4 (ENSG00000170166)	HOXD3 (ENSG00000128652)	HOXD8 (ENSG00000175879)	HOXD9 (ENSG00000128709)	HOXD10 (ENSG00000128710) #27	HOXD11 (ENSG00000128713) #28	HOXD12 (ENSG00000170178) #29	HOXD13 (ENSG00000128714) #30	EVX2 (ENSG00000174279) #31	LNPK (ENSG00000144320) #32	ATP5MC3 (ENSG00000154518) #34	ATF2 (ENSG00000115966) #35
Gorilla	MODERN SPECIES	15	SESTD1 (ENSGGOG00000000846)	ENSGGOG00000014468	TTN (ENSGGOG00000007919) #7	PLEKHA3 (ENSGGOG00000012980) #12	FKBP7 (ENSGGOG00000034906) #13	PJVK (ENSGGOG00000011071) #14	PRKRA (ENSGGOG00000005754) #15	OSBPL6 (ENSGGOG00000008266) #16	RBM45 (ENSGGOG00000013981) #17	ENSGGOG00000040977	ENSGGOG00000040822	PDE11A (ENSGGOG00000034968) #18	TTC30A (ENSGGOG00000009811) #20	AGPS (ENSGGOG00000012114) #21	ENSGGOG00000037000	NFE2L2 (ENSGGOG00000001231) #22	HNRNPA3 (ENSGGOG00000006130) #23	ENSGGOG00000043877	ENSGGOG00000037084	MTX2 (ENSGGOG00000044125) #24	ENSGGOG00000040237 #30	ENSGGOG00000040635 #29	ENSGGOG00000041480	HOXD1 (ENSGGOG00000001348) #26	ENSGGOG00000037792	HOXD3 (ENSGGOG00000037089)	HOXD4 (ENSGGOG00000042533)	ENSGGOG00000009898	HOXD9 (ENSGGOG00000001343)	HOXD10 (ENSGGOG00000001341) #27	ENSGGOG00000044084
Orangutan	MODERN SPECIES	15	CWC22 (ENSPPYG00000012986)	ZNF385B (ENSPPYG00000012984)	SESTD1 (ENSPPYG00000012982)	CCDC141 (ENSPPYG00000012981)	TTN (ENSPPYG00000012980) #7	PLEKHA3 (ENSPPYG00000012979) #12	FKBP7 (ENSPPYG00000012978) #13	PJVK (ENSPPYG00000012977) #14	ENSPPYG00000012976 #15	OSBPL6 (ENSPPYG00000012975) #16	RBM45 (ENSPPYG00000012974) #17	PDE11A (ENSPPYG00000012972) #18	TTC30A (ENSPPYG00000038583) #20	TTC30B (ENSPPYG00000034101) #20	AGPS (ENSPPYG00000012969) #21	NFE2L2 (ENSPPYG00000012968) #22	HNRNPA3 (ENSPPYG00000012967) ##23	MTX2 (ENSPPYG00000012966) #24	ENSPPYG00000037565	HOXD1 (ENSPPYG00000012964) #26	HOXD3 (ENSPPYG00000012963)	HOXD4 (ENSPPYG00000034536)	HOXD8 (ENSPPYG00000037201)	HOXD9 (ENSPPYG00000012959)	HOXD10 (ENSPPYG00000012958) #27	HOXD11 (ENSPPYG00000031598) #28	HOXD12 (ENSPPYG00000012957) #29	HOXD13 (ENSPPYG00000012956) #30	EVX2 (ENSPPYG00000012955) #31	LNPK (ENSPPYG00000032630) #32	ATP5MC3 (ENSPPYG00000037033) #34
Gibbon	MODERN SPECIES	14	ENSNLEG00000006205	ENSNLEG00000006175 #7	ENSNLEG00000032978 ##11	ENSNLEG00000034742 ##8	PLEKHA3 (ENSNLEG00000006150) #12	FKBP7 (ENSNLEG00000006149) #13	PJVK (ENSNLEG00000006144) #14	ENSNLEG00000006120 #15	OSBPL6 (ENSNLEG00000006086) #16	RBM45 (ENSNLEG00000006080) #17	ENSNLEG00000030325	PDE11A (ENSNLEG00000006056) #18	TTC30A (ENSNLEG00000030979) #20	TTC30B (ENSNLEG00000033307) #20	AGPS (ENSNLEG00000006030) #21	NFE2L2 (ENSNLEG00000006029) #22	HNRNPA3 (ENSNLEG00000028401) #23	ENSNLEG00000029348	ENSNLEG00000035565	MTX2 (ENSNLEG00000006020) #24	HOXD1 (ENSNLEG00000006019) #26	ENSNLEG00000027160	HOXD3 (ENSNLEG00000006018)	HOXD4 (ENSNLEG00000006014)	ENSNLEG00000006003	HOXD9 (ENSNLEG00000006011)	HOXD10 (ENSNLEG00000006010) #27	HOXD12 (ENSNLEG00000006006) #29	HOXD13 (ENSNLEG00000029303) #30	EVX2 (ENSNLEG00000005999) #31	LNPK (ENSNLEG00000005977) #32
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000155611.s	ENSGT00730000111148.s	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00940000155611.s	ENSGT00730000111148.s	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Capuchin	MODERN SPECIES	78	ZNF385B (ENSCCAG00000036046)	SESTD1 (ENSCCAG00000035636)	CCDC141 (ENSCCAG00000022986)	ENSCCAG00000031194 ##11	TTN (ENSCCAG00000034292) #7	PLEKHA3 (ENSCCAG00000021212) #12	FKBP7 (ENSCCAG00000023204) #13	PJVK (ENSCCAG00000036547) #14	PRKRA (ENSCCAG00000024400) #15	OSBPL6 (ENSCCAG00000034516) #16	RBM45 (ENSCCAG00000022783) #17	PDE11A (ENSCCAG00000023473) #18	ENSCCAG00000011267 #20	ENSCCAG00000002151 #20	AGPS (ENSCCAG00000012654) #21	NFE2L2 (ENSCCAG00000033992) #22	ENSCCAG00000032029	ENSCCAG00000020064
Bolivian squirrel monkey	MODERN SPECIES	46	SESTD1 (ENSSBOG00000028940)	CCDC141 (ENSSBOG00000020873)	TTN (ENSSBOG00000021641) #7	ENSSBOG00000032089 ##11	PLEKHA3 (ENSSBOG00000030061) #12	FKBP7 (ENSSBOG00000029794) #13	PJVK (ENSSBOG00000022982) #14	PRKRA (ENSSBOG00000012105) #15	ENSSBOG00000035006	OSBPL6 (ENSSBOG00000020436) #16	RBM45 (ENSSBOG00000005469) #17	PDE11A (ENSSBOG00000026746) #18	ENSSBOG00000018055 #20	ENSSBOG00000019156 #20	AGPS (ENSSBOG00000026720) #21	NFE2L2 (ENSSBOG00000022740) #22	HNRNPA3 (ENSSBOG00000034307) #23	MTX2 (ENSSBOG00000025795) #24	HOXD1 (ENSSBOG00000030906) #26	HOXD3 (ENSSBOG00000031894)	HOXD4 (ENSSBOG00000031535)	ENSSBOG00000029405	HOXD9 (ENSSBOG00000031095)	HOXD10 (ENSSBOG00000020553) #27	HOXD12 (ENSSBOG00000025723) #29	HOXD13 (ENSSBOG00000032579) #30	EVX2 (ENSSBOG00000034364) #31	LNPK (ENSSBOG00000023054) #32	ATP5MC3 (ENSSBOG00000022688) #34	ATF2 (ENSSBOG00000025461) #35	CHN1 (ENSSBOG00000016307) #36
Marmoset	MODERN SPECIES	18	PLEKHA3 (ENSCJAG00000045213) #12	ENSCJAG00000021525 ##11	CCDC141 (ENSCJAG00000032110)	SESTD1 (ENSCJAG00000021532)	ZNF385B (ENSCJAG00000021534)	ENSCJAG00000084427	ENSCJAG00000047313	ENSCJAG00000072241	ENSCJAG00000021516 #17	PDE11A (ENSCJAG00000014554) #18	ENSCJAG00000081742	ENSCJAG00000081808	AGPS (ENSCJAG00000021508) #21	ENSCJAG00000021732 #20	ENSCJAG00000059559	NFE2L2 (ENSCJAG00000008340) #22	ENSCJAG00000006928 #23	ENSCJAG00000072603	MTX2 (ENSCJAG00000039174) #24	HOXD1 (ENSCJAG00000008290) #26	HOXD3 (ENSCJAG00000063715)	HOXD4 (ENSCJAG00000008286)	HOXD8 (ENSCJAG00000008284)	HOXD9 (ENSCJAG00000046789)	HOXD10 (ENSCJAG00000008269) #27	HOXD11 (ENSCJAG00000048503) #28	HOXD12 (ENSCJAG00000079626) #29	HOXD13 (ENSCJAG00000040882) #30	EVX2 (ENSCJAG00000077487) #31	LNPK (ENSCJAG00000008226) #32	ENSCJAG00000022954
Mas night monkey	MODERN SPECIES	1333													ENSANAG00000025414 #18	ENSANAG00000003240 #20	AGPS (ENSANAG00000019626) #21	NFE2L2 (ENSANAG00000023669) #22	HNRNPA3 (ENSANAG00000002931) #23	MTX2 (ENSANAG00000022501) #24	ENSANAG00000031061	HOXD1 (ENSANAG00000019775) #26	HOXD3 (ENSANAG00000026428)	HOXD4 (ENSANAG00000028028)	HOXD8 (ENSANAG00000026980)	HOXD9 (ENSANAG00000024699)	HOXD10 (ENSANAG00000025381) #27	HOXD11 (ENSANAG00000029678) #28	HOXD12 (ENSANAG00000008919) #29	HOXD13 (ENSANAG00000029500) #30	EVX2 (ENSANAG00000031929) #31	LNPK (ENSANAG00000019161) #32	ENSANAG00000021797
Tarsier	MODERN SPECIES	1208																NFE2L2 (ENSTSYG00000000155) #22	HNRNPA3 (ENSTSYG00000026299) #23
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.B #8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.B #8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Mouse lemur	MODERN SPECIES	30	ENSMICG00000030550 #7	ENSMICG00000043822 ##11	ENSMICG00000031280 #8	ENSMICG00000009898 #12	FKBP7 (ENSMICG00000044765) #13	PJVK (ENSMICG00000028765) #14	PRKRA (ENSMICG00000009883) #15	OSBPL6 (ENSMICG00000003793) #16	RBM45 (ENSMICG00000003787) #17	ENSMICG00000047030	PDE11A (ENSMICG00000003770) #18	ENSMICG00000030225	ENSMICG00000046051 #20	ENSMICG00000003768 #20	AGPS (ENSMICG00000003750) #21	NFE2L2 (ENSMICG00000009559) #22	ENSMICG00000027841 ##23	MTX2 (ENSMICG00000004295) #24	HOXD1 (ENSMICG00000044650) #26	HOXD3 (ENSMICG00000004286)	HOXD4 (ENSMICG00000043209)	HOXD8 (ENSMICG00000004277)	HOXD9 (ENSMICG00000031229)	HOXD10 (ENSMICG00000028373) #27	HOXD11 (ENSMICG00000048033) #28	HOXD12 (ENSMICG00000002172) #29	HOXD13 (ENSMICG00000002170) #30	EVX2 (ENSMICG00000035343) #31	LNPK (ENSMICG00000027707) #32	ATP5MC3 (ENSMICG00000006421) #34	ATF2 (ENSMICG00000006417) #35
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Greater bamboo lemur	MODERN SPECIES	315	SESTD1 (ENSPSMG00000006407)	CCDC141 (ENSPSMG00000006422)	TTN (ENSPSMG00000006740) #7	ENSPSMG00000006846 ##11	ENSPSMG00000006848 ##11	PLEKHA3 (ENSPSMG00000006866) #12	FKBP7 (ENSPSMG00000006879) #13	PJVK (ENSPSMG00000006888) #14	PRKRA (ENSPSMG00000006915) #15	OSBPL6 (ENSPSMG00000007245) #16	RBM45 (ENSPSMG00000007558) #17	ENSPSMG00000007568	PDE11A (ENSPSMG00000007629) #18	ENSPSMG00000007645 #20	AGPS (ENSPSMG00000007683) #21	NFE2L2 (ENSPSMG00000007760) #22	ENSPSMG00000007769 ##23	TRIM37 (ENSPSMG00000008046)	ENSPSMG00000008167	ENSPSMG00000008202
Coquerels sifaka	MODERN SPECIES	478	CCDC141 (ENSPCOG00000001783)	ENSPCOG00000025904 #7	ENSPCOG00000024634 ##11	ENSPCOG00000021252 #7	PLEKHA3 (ENSPCOG00000020560) #12	FKBP7 (ENSPCOG00000018941) #13	PJVK (ENSPCOG00000022935) #14	PRKRA (ENSPCOG00000018812) #15	OSBPL6 (ENSPCOG00000010731) #16	ENSPCOG00000005659	RBM45 (ENSPCOG00000021526) #17	ENSPCOG00000028806	ENSPCOG00000025842	PDE11A (ENSPCOG00000025830) #18	AGPS (ENSPCOG00000018665) #21	NFE2L2 (ENSPCOG00000007362) #22	MTX2 (ENSPCOG00000025077) #24	HOXD1 (ENSPCOG00000024445) #26	HOXD3 (ENSPCOG00000017195)	HOXD4 (ENSPCOG00000018337)	HOXD8 (ENSPCOG00000024233)	HOXD9 (ENSPCOG00000026809)	HOXD10 (ENSPCOG00000023637) #27	HOXD11 (ENSPCOG00000015055) #28	HOXD12 (ENSPCOG00000022036) #29	HOXD13 (ENSPCOG00000018735) #30	EVX2 (ENSPCOG00000022416) #31	LNPK (ENSPCOG00000026983) #32	ATP5MC3 (ENSPCOG00000016374) #34	ATF2 (ENSPCOG00000025416) #35	CHN1 (ENSPCOG00000018830) #36
Bushbaby	MODERN SPECIES	163	ZNF385B (ENSOGAG00000008520)	SESTD1 (ENSOGAG00000011106)	CCDC141 (ENSOGAG00000003186)	ENSOGAG00000025603 #7	ENSOGAG00000029563 ##11	PLEKHA3 (ENSOGAG00000002724) #12	FKBP7 (ENSOGAG00000002721) #13	PJVK (ENSOGAG00000033780) #14	PRKRA (ENSOGAG00000013971) #15	OSBPL6 (ENSOGAG00000013765) #16	RBM45 (ENSOGAG00000015195) #17	ENSOGAG00000026648	ENSOGAG00000013191	ENSOGAG00000013189 #20	AGPS (ENSOGAG00000013184) #21	NFE2L2 (ENSOGAG00000034393) #22	ENSOGAG00000028132 ##23	ENSOGAG00000032690	MTX2 (ENSOGAG00000016422) #24	HOXD1 (ENSOGAG00000015712) #26	HOXD3 (ENSOGAG00000015710)	HOXD4 (ENSOGAG00000029168)	HOXD8 (ENSOGAG00000015707)	HOXD9 (ENSOGAG00000015697)	HOXD10 (ENSOGAG00000015694) #27	HOXD11 (ENSOGAG00000029520) #28	HOXD12 (ENSOGAG00000015689) #29	HOXD13 (ENSOGAG00000027055) #30	EVX2 (ENSOGAG00000025378) #31	LNPK (ENSOGAG00000030372) #32	ENSOGAG00000030354
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182892.a.a.b #22
Hedgehog	MODERN SPECIES	11801																NFE2L2 (ENSEEUG00000011243) #22
Common shrew	MODERN SPECIES	12665																NFE2L2 (ENSSARG00000010915) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Cetacea	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Odontoceti	ANCESTRAL SPECIES	13	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263523.L ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263523.L ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00390000008142.t	ENSGT00940000154298.a.a #34
Monodontidae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00950000182834.A.a.a.t	ENSGT00390000008142.t
Narwhal	MODERN SPECIES	302	ENSMMNG00015008454	TTN (ENSMMNG00015009913) #7	PLEKHA3 (ENSMMNG00015013955) #12	ENSMMNG00015013983	FKBP7 (ENSMMNG00015013990) #13	PJVK (ENSMMNG00015014003) #14	PRKRA (ENSMMNG00015014019) #15	OSBPL6 (ENSMMNG00015014111) #16	RBM45 (ENSMMNG00015014220) #17	ENSMMNG00015014238	PDE11A (ENSMMNG00015014260) #18	ENSMMNG00015014296	ENSMMNG00015007201 #20	ENSMMNG00015007232 #20	AGPS (ENSMMNG00015007255) #21	NFE2L2 (ENSMMNG00015007306) #22	ENSMMNG00015007339 ##23	MTX2 (ENSMMNG00015007394) #24	HOXD1 (ENSMMNG00015007440) #26	HOXD3 (ENSMMNG00015007460)	HOXD4 (ENSMMNG00015007477)	HOXD8 (ENSMMNG00015007526)	HOXD9 (ENSMMNG00015007556)	HOXD10 (ENSMMNG00015007571) #27	ENSMMNG00015007589 #28	HOXD12 (ENSMMNG00015007598) #29	HOXD13 (ENSMMNG00015007609) #30	EVX2 (ENSMMNG00015007622) #31	LNPK (ENSMMNG00015007647) #32	ENSMMNG00015007684	ENSMMNG00015007699
Beluga whale	MODERN SPECIES	84	ENSDLEG00000009909 ##11	ENSDLEG00000009890 #10	ENSDLEG00000009862 #7	ENSDLEG00000009851	PLEKHA3 (ENSDLEG00000009842) #12	FKBP7 (ENSDLEG00000009831) #13	PJVK (ENSDLEG00000009801) #14	PRKRA (ENSDLEG00000009768) #15	OSBPL6 (ENSDLEG00000009570) #16	RBM45 (ENSDLEG00000009507) #17	ENSDLEG00000009493	ENSDLEG00000009481 #18	ENSDLEG00000009469 #20	ENSDLEG00000009463 #20	AGPS (ENSDLEG00000009335) #21	NFE2L2 (ENSDLEG00000009266) #22	ENSDLEG00000009227 ##23	MTX2 (ENSDLEG00000009199) #24	HOXD1 (ENSDLEG00000009181) #26	HOXD3 (ENSDLEG00000009171)	HOXD4 (ENSDLEG00000009166)	HOXD8 (ENSDLEG00000009104)	HOXD9 (ENSDLEG00000009091)	HOXD10 (ENSDLEG00000009076) #27	ENSDLEG00000009052 #28	HOXD12 (ENSDLEG00000009038) #29	HOXD13 (ENSDLEG00000009014) #30	EVX2 (ENSDLEG00000008943) #31	LNPK (ENSDLEG00000008885) #32	ENSDLEG00000008854	ENSDLEG00000008837
Vaquita	MODERN SPECIES	18	ENSPSNG00000006659 ##11	ENSPSNG00000006702 ##11	ENSPSNG00000006762 ##8	PLEKHA3 (ENSPSNG00000006784) #12	ENSPSNG00000006805	FKBP7 (ENSPSNG00000006918) #13	PJVK (ENSPSNG00000006966) #14	PRKRA (ENSPSNG00000007030) #15	OSBPL6 (ENSPSNG00000007225) #16	RBM45 (ENSPSNG00000007527) #17	ENSPSNG00000007564	PDE11A (ENSPSNG00000007618) #18	ENSPSNG00000007902 #20	ENSPSNG00000005284 #20	AGPS (ENSPSNG00000005315) #21	NFE2L2 (ENSPSNG00000005384) #22	ENSPSNG00000005439 ##23	MTX2 (ENSPSNG00000005488) #24	HOXD1 (ENSPSNG00000005524) #26	HOXD3 (ENSPSNG00000005539)	HOXD4 (ENSPSNG00000005556)	HOXD8 (ENSPSNG00000005602)	HOXD9 (ENSPSNG00000005639)	HOXD10 (ENSPSNG00000005654) #27	HOXD11 (ENSPSNG00000005666) #28	HOXD12 (ENSPSNG00000005695) #29	HOXD13 (ENSPSNG00000005715) #30	EVX2 (ENSPSNG00000005734) #31	LNPK (ENSPSNG00000005786) #32	ENSPSNG00000005846	ENSPSNG00000005869
Dolphin	MODERN SPECIES	4341																NFE2L2 (ENSTTRG00000014247) #22	ENSTTRG00000014225 ##23
Sperm whale	MODERN SPECIES	11	ENSPCTG00005009719 ##11	ENSPCTG00005009648 ##11	ENSPCTG00005009577 ##11	TTN (ENSPCTG00005004468) #7	PLEKHA3 (ENSPCTG00005003988) #12	FKBP7 (ENSPCTG00005003977) #13	PRKRA (ENSPCTG00005003951) #15	PJVK (ENSPCTG00005003934) #14	OSBPL6 (ENSPCTG00005003757) #16	RBM45 (ENSPCTG00005003694) #17	ENSPCTG00005003686	PDE11A (ENSPCTG00005003616) #18	ENSPCTG00005003599 #20	ENSPCTG00005003590 #20	AGPS (ENSPCTG00005003530) #21	NFE2L2 (ENSPCTG00005003486) #22	ENSPCTG00005003466 ##23	MTX2 (ENSPCTG00005007528) #24	HOXD1 (ENSPCTG00005007516) #26	HOXD3 (ENSPCTG00005007508)	HOXD4 (ENSPCTG00005007493)	HOXD8 (ENSPCTG00005007418)	HOXD9 (ENSPCTG00005007399)	HOXD10 (ENSPCTG00005007393) #27	ENSPCTG00005007381 #28	HOXD12 (ENSPCTG00005007367) #29	HOXD13 (ENSPCTG00005007354) #30	EVX2 (ENSPCTG00005007330) #31	LNPK (ENSPCTG00005007293) #32	ATP5MC3 (ENSPCTG00005007202) #34	ATF2 (ENSPCTG00005007004) #35
Blue whale	MODERN SPECIES	18	ENSBMSG00010006553 ##11	ENSBMSG00010006534 ##8	ENSBMSG00010006522	ENSBMSG00010006506 #12	FKBP7 (ENSBMSG00010006490) #13	PJVK (ENSBMSG00010006471) #14	PRKRA (ENSBMSG00010006442) #15	OSBPL6 (ENSBMSG00010006347) #16	RBM45 (ENSBMSG00010006279) #17	ENSBMSG00010006266	ENSBMSG00010006255	PDE11A (ENSBMSG00010006216) #18	ENSBMSG00010006199 #20	ENSBMSG00010006193 #20	AGPS (ENSBMSG00010006175) #21	NFE2L2 (ENSBMSG00010006157) #22	ENSBMSG00010006149 ##23	MTX2 (ENSBMSG00010006100) #24	HOXD1 (ENSBMSG00010006055) #26	HOXD3 (ENSBMSG00010006046)	HOXD4 (ENSBMSG00010006036)	HOXD8 (ENSBMSG00010006022)	HOXD9 (ENSBMSG00010006014)	HOXD10 (ENSBMSG00010006002) #27	HOXD11 (ENSBMSG00010005993) #28	HOXD12 (ENSBMSG00010005987) #29	HOXD13 (ENSBMSG00010005980) #30	EVX2 (ENSBMSG00010005974) #31	LNPK (ENSBMSG00010005955) #32	ATP5MC3 (ENSBMSG00010005937) #34	ATF2 (ENSBMSG00010005883) #35
Pecora	ANCESTRAL SPECIES	24	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Percora_a	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Bovidae	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Bovinae	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000153299.c.a.b.u.a	ENSGT00940000154298.a.a #34
Bos	ANCESTRAL SPECIES	6	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00390000010116.fc.b #20	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #23	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000153299.c.a.b.u.a
Bos_a	ANCESTRAL SPECIES	4	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000153299.c.a.b.u.a	ENSGT00940000154298.a.a #34
Wild yak	MODERN SPECIES	1208								OSBPL6 (ENSBMUG00000024336) #16	ENSBMUG00000024374	RBM45 (ENSBMUG00000024394) #17	PDE11A (ENSBMUG00000024453) #18	ENSBMUG00000024477	ENSBMUG00000024480 #20	ENSBMUG00000024488 #20	AGPS (ENSBMUG00000024509) #21	NFE2L2 (ENSBMUG00000024519) #22	ENSBMUG00000024527 ##23
Domestic yak	MODERN SPECIES	11	PLEKHA3 (ENSBGRG00000000848) #12	FKBP7 (ENSBGRG00000000806) #13	PJVK (ENSBGRG00000000796) #14	PRKRA (ENSBGRG00000000775) #15	OSBPL6 (ENSBGRG00000000437) #16	ENSBGRG00000000374	RBM45 (ENSBGRG00000000341) #17	ENSBGRG00000000328	ENSBGRG00000000319	ENSBGRG00000000317	PDE11A (ENSBGRG00000000288) #18	ENSBGRG00000000270 #20	ENSBGRG00000000264	ENSBGRG00000000256 #20	AGPS (ENSBGRG00000000237) #21	NFE2L2 (ENSBGRG00000000213) #22	ENSBGRG00000000202 #23	MTX2 (ENSBGRG00000017363) #24	HOXD1 (ENSBGRG00000017303) #26	HOXD3 (ENSBGRG00000017255)	ENSBGRG00000017167	HOXD8 (ENSBGRG00000017045)	HOXD9 (ENSBGRG00000017014)	HOXD10 (ENSBGRG00000016979) #27	HOXD11 (ENSBGRG00000016923) #28	HOXD12 (ENSBGRG00000016890) #29	HOXD13 (ENSBGRG00000016836) #30	EVX2 (ENSBGRG00000016780) #31	LNPK (ENSBGRG00000016182) #32	ENSBGRG00000016132	ATP5MC3 (ENSBGRG00000016024) #34
Bos_b	ANCESTRAL SPECIES	3	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00390000010116.fc.b #20	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT01030000234916.g.b	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Cow	MODERN SPECIES	11	ENSBTAG00000053974 ##11	ENSBTAG00000052348 #10	ENSBTAG00000052709 #11	PLEKHA3 (ENSBTAG00000001098) #12	FKBP7 (ENSBTAG00000001097) #13	PJVK (ENSBTAG00000033254) #14	PRKRA (ENSBTAG00000001096) #15	OSBPL6 (ENSBTAG00000014405) #16	RBM45 (ENSBTAG00000006168) #17	CYCT (ENSBTAG00000039522)	PDE11A (ENSBTAG00000016396) #18	ENSBTAG00000049860	TTC30A (ENSBTAG00000027694) #20	TTC30B (ENSBTAG00000027696) #20	AGPS (ENSBTAG00000009897) #21	NFE2L2 (ENSBTAG00000019255) #22	HNRNPA3 (ENSBTAG00000021580) #23	MTX2 (ENSBTAG00000006693) #24	HOXD1 (ENSBTAG00000015840) #26	HOXD3 (ENSBTAG00000004835)	HOXD4 (ENSBTAG00000039581)	HOXD8 (ENSBTAG00000049845)	HOXD9 (ENSBTAG00000016033)	HOXD10 (ENSBTAG00000016030) #27	HOXD11 (ENSBTAG00000033330) #28	HOXD12 (ENSBTAG00000004314) #29	HOXD13 (ENSBTAG00000004313) #30	EVX2 (ENSBTAG00000049537) #31	ENSBTAG00000002009	ENSBTAG00000050237	LNPK (ENSBTAG00000018061) #32
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005029567 ##11	ENSBIXG00005029587 #10	ENSBIXG00005029747 #11	PLEKHA3 (ENSBIXG00005029758) #12	FKBP7 (ENSBIXG00005029776) #13	PJVK (ENSBIXG00005029785) #14	PRKRA (ENSBIXG00005029821) #15	OSBPL6 (ENSBIXG00005029906) #16	RBM45 (ENSBIXG00005030103) #17	ENSBIXG00005030117	PDE11A (ENSBIXG00005030175) #18	ENSBIXG00005030242 #20	ENSBIXG00005030245	ENSBIXG00005030257 #20	AGPS (ENSBIXG00005030278) #21	NFE2L2 (ENSBIXG00005030317) #22	HNRNPA3 (ENSBIXG00005030333) #23	ENSBIXG00005030352	ENSBIXG00005030356	MTX2 (ENSBIXG00005030400) #24	HOXD1 (ENSBIXG00005030413) #26	HOXD3 (ENSBIXG00005030419)	HOXD8 (ENSBIXG00005030431)	HOXD9 (ENSBIXG00005030437)	HOXD10 (ENSBIXG00005005289) #27	HOXD11 (ENSBIXG00005001515) #28	HOXD12 (ENSBIXG00005001517) #29	HOXD13 (ENSBIXG00005001519) #30	EVX2 (ENSBIXG00005005288) #31	ENSBIXG00005029246	ENSBIXG00005029245
American bison	MODERN SPECIES	3320	ENSBBBG00000018488 ##11	ENSBBBG00000018480 #10	ENSBBBG00000018475 #11	PLEKHA3 (ENSBBBG00000004536) #12	FKBP7 (ENSBBBG00000018464) #13	PJVK (ENSBBBG00000004525) #14	PRKRA (ENSBBBG00000018426) #15	OSBPL6 (ENSBBBG00000018398) #16	RBM45 (ENSBBBG00000004406) #17	ENSBBBG00000017912	PDE11A (ENSBBBG00000017894) #18	ENSBBBG00000017839	ENSBBBG00000017832 #20	ENSBBBG00000007701 #20	AGPS (ENSBBBG00000017817) #21	NFE2L2 (ENSBBBG00000017780) #22	ENSBBBG00000007269 #23	MTX2 (ENSBBBG00000017733) #24	ENSBBBG00000017700	ENSBBBG00000004376	HOXD1 (ENSBBBG00000017690) #26	HOXD3 (ENSBBBG00000017682)	HOXD4 (ENSBBBG00000017669)	HOXD8 (ENSBBBG00000017657)	HOXD9 (ENSBBBG00000017650)	HOXD10 (ENSBBBG00000006962) #27	HOXD12 (ENSBBBG00000017645) #29	HOXD13 (ENSBBBG00000017641) #30	ENSBBBG00000017638	ENSBBBG00000017634	LNPK (ENSBBBG00000017627) #32
Caprinae	ANCESTRAL SPECIES	5	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020020356 #7	ENSOARG00020020425 ##11	ENSOARG00020020485 ##11	ENSOARG00020020514 #11	PLEKHA3 (ENSOARG00020020544) #12	FKBP7 (ENSOARG00020020704) #13	PJVK (ENSOARG00020020753) #14	PRKRA (ENSOARG00020020855) #15	OSBPL6 (ENSOARG00020020986) #16	RBM45 (ENSOARG00020022028) #17	ENSOARG00020022078	PDE11A (ENSOARG00020022115) #18	ENSOARG00020022364 #20	ENSOARG00020022373 #20	AGPS (ENSOARG00020022410) #21	NFE2L2 (ENSOARG00020022726) #22	HNRNPA3 (ENSOARG00020000123) #23	MTX2 (ENSOARG00020000188) #24	HOXD1 (ENSOARG00020000237) #26	HOXD3 (ENSOARG00020000257)	HOXD4 (ENSOARG00020000275)	HOXD8 (ENSOARG00020000297)	HOXD9 (ENSOARG00020000321)	HOXD10 (ENSOARG00020000330) #27	hoxd11 (ENSOARG00020000346) #28	HOXD12 (ENSOARG00020000357) #29	HOXD13 (ENSOARG00020000373) #30	EVX2 (ENSOARG00020000381) #31	ENSOARG00020000394	LNPK (ENSOARG00020000416) #32	ATP5MC3 (ENSOARG00020000538) #34
Goat	MODERN SPECIES	11	ENSCHIG00000016308 ##11	ENSCHIG00000027063 ##11	ENSCHIG00000018472 #11	PLEKHA3 (ENSCHIG00000019515) #12	FKBP7 (ENSCHIG00000017480) #13	PJVK (ENSCHIG00000013011) #14	PRKRA (ENSCHIG00000015333) #15	OSBPL6 (ENSCHIG00000008898) #16	ENSCHIG00000017164	RBM45 (ENSCHIG00000010687) #17	ENSCHIG00000026156	PDE11A (ENSCHIG00000016852) #18	ENSCHIG00000011716 #20	ENSCHIG00000011750 #20	AGPS (ENSCHIG00000015256) #21	NFE2L2 (ENSCHIG00000026055) #22	ENSCHIG00000015430 #23	MTX2 (ENSCHIG00000008892) #24	HOXD1 (ENSCHIG00000017515) #26	HOXD3 (ENSCHIG00000011624)	HOXD4 (ENSCHIG00000019702)	HOXD8 (ENSCHIG00000013371)	HOXD9 (ENSCHIG00000023245)	HOXD10 (ENSCHIG00000011771) #27	HOXD11 (ENSCHIG00000026087) #28	HOXD12 (ENSCHIG00000014734) #29	HOXD13 (ENSCHIG00000009994) #30	EVX2 (ENSCHIG00000026644) #31	ENSCHIG00000004992	ENSCHIG00000025787	LNPK (ENSCHIG00000012313) #32
Siberian musk deer	MODERN SPECIES	342								OSBPL6 (ENSMMSG00000006219) #16	RBM45 (ENSMMSG00000006596) #17	ENSMMSG00000006624	PDE11A (ENSMMSG00000006654) #18	ENSMMSG00000006819 #20	ENSMMSG00000006854 #20	AGPS (ENSMMSG00000006894) #21	ENSMMSG00000006963	NFE2L2 (ENSMMSG00000006992) #22	ENSMMSG00000007068 ##23	MTX2 (ENSMMSG00000007226) #24	HOXD1 (ENSMMSG00000007322) #26	HOXD3 (ENSMMSG00000007343)	HOXD4 (ENSMMSG00000007365)	HOXD8 (ENSMMSG00000007407)	HOXD9 (ENSMMSG00000007480)	HOXD10 (ENSMMSG00000007495) #27	HOXD11 (ENSMMSG00000007513) #28	HOXD12 (ENSMMSG00000007530) #29	HOXD13 (ENSMMSG00000007541) #30	EVX2 (ENSMMSG00000007555) #31	LNPK (ENSMMSG00000007582) #32	ENSMMSG00000007642 #34	ATF2 (ENSMMSG00000007713) #35
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000023401 ##11	ENSCHYG00000023464 ##11	ENSCHYG00000023539 #10	PLEKHA3 (ENSCHYG00000023579) #12	FKBP7 (ENSCHYG00000023614) #13	PJVK (ENSCHYG00000023643) #14	PRKRA (ENSCHYG00000023726) #15	OSBPL6 (ENSCHYG00000023926) #16	RBM45 (ENSCHYG00000024364) #17	ENSCHYG00000024431	ENSCHYG00000024445	PDE11A (ENSCHYG00000024466) #18	ENSCHYG00000024550 #20	ENSCHYG00000024559 #20	AGPS (ENSCHYG00000024578) #21	NFE2L2 (ENSCHYG00000024719) #22	ENSCHYG00000015038 #23	ENSCHYG00000015305	MTX2 (ENSCHYG00000015392) #24	HOXD1 (ENSCHYG00000015562) #26	HOXD3 (ENSCHYG00000015650)	HOXD4 (ENSCHYG00000015683)	HOXD8 (ENSCHYG00000015741)	HOXD9 (ENSCHYG00000015808)	HOXD10 (ENSCHYG00000015831) #27	ENSCHYG00000015846	HOXD12 (ENSCHYG00000015954) #29	HOXD13 (ENSCHYG00000015985) #30	LNPK (ENSCHYG00000016125) #32	ENSCHYG00000016391	ENSCHYG00000016417
Camelidae	ANCESTRAL SPECIES	16	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116.fc.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Alpaca	MODERN SPECIES	3699												PDE11A (ENSVPAG00000005129) #18	ENSVPAG00000005128 #20	ENSVPAG00000005127 #20	AGPS (ENSVPAG00000005122) #21	NFE2L2 (ENSVPAG00000005117) #22
Arabian camel	MODERN SPECIES	31	ENSCDRG00005005297 ##11	ENSCDRG00005005276 ##11	ENSCDRG00005005255 ##11	TTN (ENSCDRG00005003286) #7	PLEKHA3 (ENSCDRG00005003046) #12	FKBP7 (ENSCDRG00005003026) #13	PJVK (ENSCDRG00005003020) #14	PRKRA (ENSCDRG00005002991) #15	ENSCDRG00005002982	OSBPL6 (ENSCDRG00005002764) #16	RBM45 (ENSCDRG00005002693) #17	PDE11A (ENSCDRG00005002676) #18	ENSCDRG00005002663 #20	ENSCDRG00005002654 #20	AGPS (ENSCDRG00005002612) #21	NFE2L2 (ENSCDRG00005002588) #22	HNRNPA3 (ENSCDRG00005002567) #23	MTX2 (ENSCDRG00005002532) #24	HOXD3 (ENSCDRG00005002512)	HOXD4 (ENSCDRG00005002497)	HOXD8 (ENSCDRG00005002477)	HOXD9 (ENSCDRG00005002467)	HOXD10 (ENSCDRG00005002456) #27	HOXD11 (ENSCDRG00005002440) #28	HOXD12 (ENSCDRG00005002432) #29	HOXD13 (ENSCDRG00005002411) #30	EVX2 (ENSCDRG00005002358) #31	LNPK (ENSCDRG00005002325) #32	ATP5MC3 (ENSCDRG00005002307) #34	ATF2 (ENSCDRG00005002159) #35	CHN1 (ENSCDRG00005002091) #36
Suina	ANCESTRAL SPECIES	3	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000010491.kb.a	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Chacoan peccary	MODERN SPECIES	88	SESTD1 (ENSCWAG00000004249)	ENSCWAG00000004196	ENSCWAG00000004147 ##11	ENSCWAG00000004104 ##11	ENSCWAG00000004059 ##11	TTN (ENSCWAG00000002022) #7	PLEKHA3 (ENSCWAG00000001517) #12	FKBP7 (ENSCWAG00000001502) #13	PJVK (ENSCWAG00000001480) #14	PRKRA (ENSCWAG00000001459) #15	OSBPL6 (ENSCWAG00000001227) #16	RBM45 (ENSCWAG00000001104) #17	ENSCWAG00000001084	PDE11A (ENSCWAG00000001000) #18	AGPS (ENSCWAG00000000957) #21	NFE2L2 (ENSCWAG00000000916) #22	HNRNPA3 (ENSCWAG00000000880) #23	MTX2 (ENSCWAG00000000848) #24	HOXD1 (ENSCWAG00000000831) #26	HOXD3 (ENSCWAG00000000815)	HOXD4 (ENSCWAG00000000799)	HOXD8 (ENSCWAG00000000766)	HOXD9 (ENSCWAG00000000750)	HOXD10 (ENSCWAG00000000737) #27	HOXD11 (ENSCWAG00000000728) #28	HOXD12 (ENSCWAG00000000716) #29	HOXD13 (ENSCWAG00000000704) #30	EVX2 (ENSCWAG00000000686) #31	ENSCWAG00000000677	LNPK (ENSCWAG00000000637) #32	ENSCWAG00000000620 #34
Pig	MODERN SPECIES	6	ENSSSCG00000061723 #7	ENSSSCG00000042430 ##11	ENSSSCG00000053021 ##11	ENSSSCG00000034677 ##11	ENSSSCG00000038561 ##11	ENSSSCG00000036052 ##8	PLEKHA3 (ENSSSCG00000049025) #12	FKBP7 (ENSSSCG00000015999) #13	PJVK (ENSSSCG00000015998) #14	PRKRA (ENSSSCG00000038254) #15	OSBPL6 (ENSSSCG00000023133) #16	RBM45 (ENSSSCG00000015996) #17	ENSSSCG00000047774	PDE11A (ENSSSCG00000038903) #18	AGPS (ENSSSCG00000023983) #21	NFE2L2 (ENSSSCG00000015987) #22	ENSSSCG00000015988 ##23	MTX2 (ENSSSCG00000022222) #24	HOXD1 (ENSSSCG00000015986) #26	HOXD3 (ENSSSCG00000015985)	HOXD4 (ENSSSCG00000015984)	HOXD8 (ENSSSCG00000040349)	HOXD9 (ENSSSCG00000015982)	HOXD10 (ENSSSCG00000015981) #27	HOXD11 (ENSSSCG00000034741) #28	HOXD12 (ENSSSCG00000015980) #29	HOXD13 (ENSSSCG00000057890) #30	EVX2 (ENSSSCG00000023146) #31	ENSSSCG00000053760	ENSSSCG00000039002	LNPK (ENSSSCG00000015976) #32
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Greater horseshoe bat	MODERN SPECIES	26	ZNF385B (ENSRFEG00010018087)	SESTD1 (ENSRFEG00010018265)	CCDC141 (ENSRFEG00010018317)	ENSRFEG00010020094 ##11	PLEKHA3 (ENSRFEG00010022147) #12	FKBP7 (ENSRFEG00010022148) #13	DFNB59 (ENSRFEG00010022149) #14	PRKRA (ENSRFEG00010022150) #15	OSBPL6 (ENSRFEG00010022151) #16	RBM45 (ENSRFEG00010022152) #17	ENSRFEG00010022153	PDE11A (ENSRFEG00010022154) #18	ENSRFEG00010022156 #20	ENSRFEG00010022157 #20	ENSRFEG00010022158 #21	NFE2L2 (ENSRFEG00010022160) #22	ENSRFEG00010022161 ##23	MTX2 (ENSRFEG00010022163) #24	HOXD1 (ENSRFEG00010022164) #26	HOXD3 (ENSRFEG00010022165)	HOXD4 (ENSRFEG00010022166)	HOXD8 (ENSRFEG00010022168)	HOXD9 (ENSRFEG00010022169)	HOXD10 (ENSRFEG00010022170) #27	HOXD11 (ENSRFEG00010022171) #28	HOXD12 (ENSRFEG00010022172) #29	HOXD13 (ENSRFEG00010022173) #30	EVX2 (ENSRFEG00010000230) #31	LNPK (ENSRFEG00010000270) #32	ENSRFEG00010000353 #34	ATF2 (ENSRFEG00010000479) #35
Microbat	MODERN SPECIES	942	TTN (ENSMLUG00000005832) #7	ENSMLUG00000024664 ##11	PLEKHA3 (ENSMLUG00000005823) #12	FKBP7 (ENSMLUG00000005816) #13	PJVK (ENSMLUG00000005814) #14	ENSMLUG00000005810 #15	ENSMLUG00000022423	OSBPL6 (ENSMLUG00000005787) #16	RBM45 (ENSMLUG00000005782) #17	PDE11A (ENSMLUG00000005135) #18	ENSMLUG00000028755	ENSMLUG00000005133 #20	ENSMLUG00000005126 #20	AGPS (ENSMLUG00000005113) #21	ENSMLUG00000025480	NFE2L2 (ENSMLUG00000003909) #22	ENSMLUG00000003906 ##23	MTX2 (ENSMLUG00000015966) #24	ENSMLUG00000029447 #26	HOXD3 (ENSMLUG00000012510)	HOXD4 (ENSMLUG00000012508)	HOXD8 (ENSMLUG00000028864)	HOXD10 (ENSMLUG00000007048) #27	HOXD11 (ENSMLUG00000007030) #28	HOXD12 (ENSMLUG00000007009) #29	HOXD13 (ENSMLUG00000006997) #30	EVX2 (ENSMLUG00000006989) #31	ENSMLUG00000022478	LNPK (ENSMLUG00000006972) #32	ENSMLUG00000012822 #34	ATF2 (ENSMLUG00000015718) #35
Megabat	MODERN SPECIES	2191											RBM45 (ENSPVAG00000010390) #17	PDE11A (ENSPVAG00000010389) #18	ENSPVAG00000010388 #20	ENSPVAG00000010387 #20	AGPS (ENSPVAG00000010384) #21	NFE2L2 (ENSPVAG00000010382) #22	ENSPVAG00000010380 ##23
Equus	ANCESTRAL SPECIES	18	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000005569.x.a.a.b	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Donkey	MODERN SPECIES	24	CCDC141 (ENSEASG00005022349)	TTN (ENSEASG00005024097) #7	ENSEASG00005036015 ##11	ENSEASG00005024821 #10	PLEKHA3 (ENSEASG00005022419) #12	FKBP7 (ENSEASG00005022426) #13	PJVK (ENSEASG00005022430) #14	PRKRA (ENSEASG00005022436) #15	OSBPL6 (ENSEASG00005022455) #16	RBM45 (ENSEASG00005022475) #17	ENSEASG00005026887	PDE11A (ENSEASG00005022489) #18	ENSEASG00005028303 #20	AGPS (ENSEASG00005022514) #21	ENSEASG00005026944 #20	NFE2L2 (ENSEASG00005028739) #22	HNRNPA3 (ENSEASG00005022530) #23	MTX2 (ENSEASG00005022537) #24	HOXD1 (ENSEASG00005030887) #26	HOXD3 (ENSEASG00005022544)	HOXD4 (ENSEASG00005024806)	HOXD8 (ENSEASG00005033905)	HOXD9 (ENSEASG00005023994)	HOXD10 (ENSEASG00005022552) #27	HOXD11 (ENSEASG00005030904) #28	HOXD12 (ENSEASG00005022555) #29	HOXD13 (ENSEASG00005029242) #30	EVX2 (ENSEASG00005022562) #31	ENSEASG00005022564	LNPK (ENSEASG00005022567) #32	ATP5MC3 (ENSEASG00005022573) #34
Horse	MODERN SPECIES	9	SESTD1 (ENSECAG00000011753)	CCDC141 (ENSECAG00000007805)	TTN (ENSECAG00000042020) #7	PLEKHA3 (ENSECAG00000010715) #12	FKBP7 (ENSECAG00000008092) #13	PJVK (ENSECAG00000007310) #14	PRKRA (ENSECAG00000024263) #15	OSBPL6 (ENSECAG00000020078) #16	RBM45 (ENSECAG00000017129) #17	CYCT (ENSECAG00000016170)	ENSECAG00000057854	PDE11A (ENSECAG00000004445) #18	ENSECAG00000000927 #20	ENSECAG00000051775	AGPS (ENSECAG00000008695) #21	NFE2L2 (ENSECAG00000005675) #22	HNRNPA3 (ENSECAG00000059976) #23	MTX2 (ENSECAG00000022464) #24	HOXD1 (ENSECAG00000035437) #26	HOXD3 (ENSECAG00000022129)	HOXD4 (ENSECAG00000038429)	HOXD8 (ENSECAG00000021980)	HOXD9 (ENSECAG00000021845)	HOXD10 (ENSECAG00000020599) #27	HOXD11 (ENSECAG00000003045) #28	HOXD13 (ENSECAG00000020388) #30	EVX2 (ENSECAG00000019796) #31	ENSECAG00000043913	LNPK (ENSECAG00000008534) #32	ATP5MC3 (ENSECAG00000008514) #34	ATF2 (ENSECAG00000018723) #35
Carnivora	ANCESTRAL SPECIES	17	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Felidae	ANCESTRAL SPECIES	15	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.wb #20	ENSGT00390000010116.vb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Panthera	ANCESTRAL SPECIES	9	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.wb #20	ENSGT00390000010116.vb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Tiger	MODERN SPECIES	43																NFE2L2 (ENSPTIG00000007874) #22	HNRNPA3 (ENSPTIG00000008598) #23	MTX2 (ENSPTIG00000011503) #24	ENSPTIG00000013485	HOXD4 (ENSPTIG00000015199)	ENSPTIG00000015581	ENSPTIG00000006835	HOXD10 (ENSPTIG00000015771) #27	HOXD13 (ENSPTIG00000016212) #30	LNPK (ENSPTIG00000016532) #32	ATP5MC3 (ENSPTIG00000016881) #34	ATF2 (ENSPTIG00000017517) #35	CHN1 (ENSPTIG00000006887) #36	CHRNA1 (ENSPTIG00000012090)	WIPF1 (ENSPTIG00000016801)	GPR155 (ENSPTIG00000018965)
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.wb #20	ENSGT00390000010116.vb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
lion	MODERN SPECIES	8	CWC22 (ENSPLOG00000004688)	ZNF385B (ENSPLOG00000004710)	SESTD1 (ENSPLOG00000004731)	CCDC141 (ENSPLOG00000004750)	ENSPLOG00000007181 ##11	PLEKHA3 (ENSPLOG00000021313) #12	FKBP7 (ENSPLOG00000021347) #13	PJVK (ENSPLOG00000021374) #14	PRKRA (ENSPLOG00000021458) #15	OSBPL6 (ENSPLOG00000021601) #16	RBM45 (ENSPLOG00000021986) #17	PDE11A (ENSPLOG00000022012) #18	ENSPLOG00000022045 #20	ENSPLOG00000022046 #20	AGPS (ENSPLOG00000022055) #21	NFE2L2 (ENSPLOG00000022123) #22	ENSPLOG00000022134 #23	MTX2 (ENSPLOG00000022148) #24	HOXD1 (ENSPLOG00000022171) #26	HOXD3 (ENSPLOG00000022176)	HOXD4 (ENSPLOG00000022180)	HOXD8 (ENSPLOG00000022192)	HOXD9 (ENSPLOG00000022195)	HOXD10 (ENSPLOG00000022198) #27	HOXD11 (ENSPLOG00000022202) #28	HOXD12 (ENSPLOG00000022207) #29	HOXD13 (ENSPLOG00000022213) #30	EVX2 (ENSPLOG00000022219) #31	LNPK (ENSPLOG00000022229) #32	ATP5MC3 (ENSPLOG00000022249) #34	ATF2 (ENSPLOG00000022276) #35
leopard	MODERN SPECIES	1	SESTD1 (ENSPPRG00000001855)	CCDC141 (ENSPPRG00000002134)	ENSPPRG00000003860 ##11	TTN (ENSPPRG00000010584) #7	PLEKHA3 (ENSPPRG00000011583) #12	FKBP7 (ENSPPRG00000011718) #13	PJVK (ENSPPRG00000011834) #14	ENSPPRG00000011982 #15	OSBPL6 (ENSPPRG00000015447) #16	RBM45 (ENSPPRG00000017073) #17	ENSPPRG00000017216	PDE11A (ENSPPRG00000019135) #18	ENSPPRG00000021101 #20	ENSPPRG00000021116 #20	AGPS (ENSPPRG00000020328) #21	NFE2L2 (ENSPPRG00000020872) #22	ENSPPRG00000022322 #23	MTX2 (ENSPPRG00000022475) #24	HOXD1 (ENSPPRG00000023009) #26	HOXD3 (ENSPPRG00000022847)	HOXD4 (ENSPPRG00000022845)	HOXD8 (ENSPPRG00000022672)	HOXD9 (ENSPPRG00000000084)	HOXD10 (ENSPPRG00000000139) #27	HOXD11 (ENSPPRG00000000168) #28	HOXD12 (ENSPPRG00000000300) #29	HOXD13 (ENSPPRG00000000349) #30	EVX2 (ENSPPRG00000000389) #31	LNPK (ENSPPRG00000000436) #32	ATP5MC3 (ENSPPRG00000000490) #34	ATF2 (ENSPPRG00000001271) #35
Cat	MODERN SPECIES	239	ENSFCAG00000049768 ##11	ENSFCAG00000046893 ##11	ENSFCAG00000050241 ##11	ENSFCAG00000032293 ##11	TTN (ENSFCAG00000046559) #7	PLEKHA3 (ENSFCAG00000025945) #12	FKBP7 (ENSFCAG00000012540) #13	PJVK (ENSFCAG00000018124) #14	PRKRA (ENSFCAG00000031042) #15	OSBPL6 (ENSFCAG00000012535) #16	RBM45 (ENSFCAG00000018793) #17	PDE11A (ENSFCAG00000022207) #18	ENSFCAG00000049217 #20	ENSFCAG00000048732 #20	AGPS (ENSFCAG00000022316) #21	NFE2L2 (ENSFCAG00000012147) #22	HNRNPA3 (ENSFCAG00000012146) #23	MTX2 (ENSFCAG00000030099) #24	HOXD1 (ENSFCAG00000042171) #26	HOXD3 (ENSFCAG00000022371)	HOXD4 (ENSFCAG00000045772)	HOXD8 (ENSFCAG00000034788)	HOXD9 (ENSFCAG00000035038)	HOXD10 (ENSFCAG00000006264) #27	HOXD11 (ENSFCAG00000030594) #28	HOXD12 (ENSFCAG00000044671) #29	HOXD13 (ENSFCAG00000030694) #30	EVX2 (ENSFCAG00000023892) #31	LNPK (ENSFCAG00000033171) #32	ATP5MC3 (ENSFCAG00000012719) #34	ATF2 (ENSFCAG00000027595) #35
Caniformia	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Canidae	ANCESTRAL SPECIES	45	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.B #8	ENSGT01100000263523.L ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.ub #20	ENSGT00390000010116.tb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.i #34	ENSGT00940000156582 #35
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.L ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.ub #20	ENSGT00390000010116.tb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.i #34	ENSGT00940000156582 #35
Dingo	MODERN SPECIES	339	ENSCAFG00020007149 #7	ENSCAFG00020007141 ##11	ENSCAFG00020007129 ##11	ENSCAFG00020007118 ##11	ENSCAFG00020007110 ##8	PLEKHA3 (ENSCAFG00020007100) #12	FKBP7 (ENSCAFG00020007095) #13	PJVK (ENSCAFG00020007088) #14	ENSCAFG00020007071 #15	OSBPL6 (ENSCAFG00020007025) #16	RBM45 (ENSCAFG00020007013) #17	PDE11A (ENSCAFG00020006966) #18	ENSCAFG00020006963 #20	ENSCAFG00020006961 #20	AGPS (ENSCAFG00020006351) #21	NFE2L2 (ENSCAFG00020006313) #22	ENSCAFG00020006299 ##23	MTX2 (ENSCAFG00020006273) #24	HOXD1 (ENSCAFG00020006270) #26	HOXD3 (ENSCAFG00020006263)	HOXD4 (ENSCAFG00020006256)	HOXD8 (ENSCAFG00020006244)	HOXD10 (ENSCAFG00020006239) #27	HOXD11 (ENSCAFG00020006229) #28	HOXD9 (ENSCAFG00020006227)	HOXD12 (ENSCAFG00020006216) #29	HOXD13 (ENSCAFG00020006212) #30	EVX2 (ENSCAFG00020006206) #31	LNPK (ENSCAFG00020006192) #32	ENSCAFG00020006176	ENSCAFG00020006151 #34
Dog	MODERN SPECIES	29	CCDC141 (ENSCAFG00845025967)	ENSCAFG00845025823 ##11	ENSCAFG00845025741 ##11	ENSCAFG00845025563 ##11	TTN (ENSCAFG00845023220) #7	PLEKHA3 (ENSCAFG00845022559) #12	FKBP7 (ENSCAFG00845022485) #13	ENSCAFG00845022360 #15	PJVK (ENSCAFG00845022256) #14	OSBPL6 (ENSCAFG00845021295) #16	RBM45 (ENSCAFG00845020808) #17	ENSCAFG00845020768	PDE11A (ENSCAFG00845020545) #18	TTC30A (ENSCAFG00845020493) #20	AGPS (ENSCAFG00845020190) #21	NFE2L2 (ENSCAFG00845020022) #22	HNRNPA3 (ENSCAFG00845019864) #23	MTX2 (ENSCAFG00845019381) #24	HOXD1 (ENSCAFG00845019313) #26	HOXD3 (ENSCAFG00845019275)	HOXD4 (ENSCAFG00845019072)	HOXD10 (ENSCAFG00845019028) #27	HOXD9 (ENSCAFG00845018856)	ENSCAFG00845018802 #28	HOXD12 (ENSCAFG00845018775) #29	HOXD13 (ENSCAFG00845018741) #30	EVX2 (ENSCAFG00845018704) #31	LNPK (ENSCAFG00845018510) #32	ENSCAFG00845018368	ATP5MC3 (ENSCAFG00845018248) #34	ATF2 (ENSCAFG00845017708) #35
Red fox	MODERN SPECIES	15	ENSVVUG00000009921 ##11	ENSVVUG00000009932 ##11	ENSVVUG00000009947 ##11	ENSVVUG00000010016 #8	PLEKHA3 (ENSVVUG00000010019) #12	FKBP7 (ENSVVUG00000010027) #13	PJVK (ENSVVUG00000010029) #14	PRKRA (ENSVVUG00000010032) #15	OSBPL6 (ENSVVUG00000010039) #16	RBM45 (ENSVVUG00000010078) #17	PDE11A (ENSVVUG00000010094) #18	ENSVVUG00000010109 #20	AGPS (ENSVVUG00000010164) #21	ENSVVUG00000012634 #20	ENSVVUG00000012637	NFE2L2 (ENSVVUG00000012641) #22	ENSVVUG00000012651 ##23	ENSVVUG00000012682 #24	ENSVVUG00000012694	HOXD3 (ENSVVUG00000012700)	HOXD8 (ENSVVUG00000012714)	ENSVVUG00000012717	HOXD10 (ENSVVUG00000012722) #27	ENSVVUG00000012726 #28	HOXD12 (ENSVVUG00000012731) #29	HOXD13 (ENSVVUG00000012734) #30	EVX2 (ENSVVUG00000012735) #31	LNPK (ENSVVUG00000012737) #32	ATP5MC3 (ENSVVUG00000012759) #34	ATF2 (ENSVVUG00000012774) #35	CHN1 (ENSVVUG00000012819) #36
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Ursidae	ANCESTRAL SPECIES	7	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00900000143154 #10	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00940000153147.m.a.a.a.b.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.m.b #34
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000005421	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.m.b #34	ENSGT00940000156582 #35
Polar bear	MODERN SPECIES	142	SESTD1 (ENSUMAG00000016664)	CCDC141 (ENSUMAG00000016645)	ENSUMAG00000016620 #7	ENSUMAG00000016607 ##11	ENSUMAG00000016602 ##11	ENSUMAG00000016583 #8	PLEKHA3 (ENSUMAG00000016580) #12	FKBP7 (ENSUMAG00000016577) #13	PJVK (ENSUMAG00000016572) #14	PRKRA (ENSUMAG00000016566) #15	OSBPL6 (ENSUMAG00000016519) #16	RBM45 (ENSUMAG00000016503) #17	PDE11A (ENSUMAG00000016414) #18	ENSUMAG00000016390 #20	AGPS (ENSUMAG00000015781) #21	NFE2L2 (ENSUMAG00000015689) #22	ENSUMAG00000015686 ##23	MTX2 (ENSUMAG00000015662) #24	HOXD4 (ENSUMAG00000015658)	ENSUMAG00000015653	HOXD10 (ENSUMAG00000015650) #27	ENSUMAG00000015649 #28	LNPK (ENSUMAG00000015613) #32	ATP5MC3 (ENSUMAG00000015579) #34	ATF2 (ENSUMAG00000015564) #35	CHN1 (ENSUMAG00000015511) #36	CHRNA1 (ENSUMAG00000015480)	ENSUMAG00000015473	ENSUMAG00000015461	GPR155 (ENSUMAG00000015425)	SCRN3 (ENSUMAG00000015422)
American black bear	MODERN SPECIES	390																NFE2L2 (ENSUAMG00000007100) #22
Giant Panda	MODERN SPECIES	11	ENSAMEG00000029059 ##11	ENSAMEG00000029868 ##11	ENSAMEG00000028448 ##11	ENSAMEG00000026332 ##11	ENSAMEG00000029399 #10	ENSAMEG00000030666 #11	PLEKHA3 (ENSAMEG00000000774) #12	FKBP7 (ENSAMEG00000027885) #13	PJVK (ENSAMEG00000000801) #14	PRKRA (ENSAMEG00000000803) #15	OSBPL6 (ENSAMEG00000000825) #16	RBM45 (ENSAMEG00000000896) #17	ENSAMEG00000023664	PDE11A (ENSAMEG00000000902) #18	AGPS (ENSAMEG00000011950) #21	NFE2L2 (ENSAMEG00000011937) #22	HNRNPA3 (ENSAMEG00000011920) #23	ENSAMEG00000019906	MTX2 (ENSAMEG00000001799) #24	HOXD1 (ENSAMEG00000028345) #26	HOXD3 (ENSAMEG00000026957)	HOXD4 (ENSAMEG00000025663)	HOXD8 (ENSAMEG00000023565)	HOXD9 (ENSAMEG00000029987)	HOXD10 (ENSAMEG00000001849) #27	ENSAMEG00000025193 #28	HOXD12 (ENSAMEG00000023609) #29	HOXD13 (ENSAMEG00000001865) #30	EVX2 (ENSAMEG00000001868) #31	LNPK (ENSAMEG00000001869) #32	ATP5MC3 (ENSAMEG00000012367) #34
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
American mink	MODERN SPECIES	222	ENSNVIG00000006216 ##11	ENSNVIG00000006230 ##11	ENSNVIG00000006244 ##11	ENSNVIG00000006252 #10	ENSNVIG00000006264 #7	PLEKHA3 (ENSNVIG00000006265) #12	FKBP7 (ENSNVIG00000006271) #13	PJVK (ENSNVIG00000006274) #14	PRKRA (ENSNVIG00000006320) #15	OSBPL6 (ENSNVIG00000006388) #16	RBM45 (ENSNVIG00000006823) #17	ENSNVIG00000006839	PDE11A (ENSNVIG00000006854) #18	ENSNVIG00000006929	AGPS (ENSNVIG00000006950) #21	NFE2L2 (ENSNVIG00000006995) #22	HNRNPA3 (ENSNVIG00000007022) #23	MTX2 (ENSNVIG00000007075) #24	HOXD1 (ENSNVIG00000007113) #26	HOXD3 (ENSNVIG00000007128)	HOXD4 (ENSNVIG00000007138)	ENSNVIG00000007149	HOXD9 (ENSNVIG00000007158)	HOXD10 (ENSNVIG00000007162) #27	ENSNVIG00000007170 #28	HOXD12 (ENSNVIG00000007175) #29	HOXD13 (ENSNVIG00000007186) #30	EVX2 (ENSNVIG00000007198) #31	LNPK (ENSNVIG00000007208) #32
Ferret	MODERN SPECIES	359														AGPS (ENSMPUG00000014173) #21	ENSMPUG00000014172	ENSMPUG00000014168 #22	ENSMPUG00000014103 ##23	ENSMPUG00000014101	MTX2 (ENSMPUG00000014094) #24	ENSMPUG00000014088	HOXD1 (ENSMPUG00000014084) #26	ENSMPUG00000014080	HOXD3 (ENSMPUG00000014072)	HOXD4 (ENSMPUG00000014070)	ENSMPUG00000014067	ENSMPUG00000014060	HOXD9 (ENSMPUG00000014053)	HOXD10 (ENSMPUG00000014049) #27	HOXD11 (ENSMPUG00000014029) #28	HOXD12 (ENSMPUG00000014025) #29	HOXD13 (ENSMPUG00000014022) #30
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Xenarthra	ANCESTRAL SPECIES	11	ENSGT00390000005421	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Sloth	MODERN SPECIES	1509																NFE2L2 (ENSCHOG00000005792) #22
Armadillo	MODERN SPECIES	3580	ENSDNOG00000019250	SESTD1 (ENSDNOG00000014724)	CCDC141 (ENSDNOG00000031268)	ENSDNOG00000048097 #7	ENSDNOG00000031177 ##11	PLEKHA3 (ENSDNOG00000002717) #12	FKBP7 (ENSDNOG00000035521) #13	PJVK (ENSDNOG00000019700) #14	PRKRA (ENSDNOG00000019701) #15	OSBPL6 (ENSDNOG00000016352) #16	RBM45 (ENSDNOG00000001973) #17	ENSDNOG00000016006	ENSDNOG00000032224 #20	ENSDNOG00000044838 #20	AGPS (ENSDNOG00000032919) #21	NFE2L2 (ENSDNOG00000019020) #22	HNRNPA3 (ENSDNOG00000019022) #23	MTX2 (ENSDNOG00000034659) #24	HOXD1 (ENSDNOG00000019807) #26	HOXD3 (ENSDNOG00000035593)	HOXD4 (ENSDNOG00000019805)	HOXD8 (ENSDNOG00000036145)	HOXD10 (ENSDNOG00000034389) #27	HOXD11 (ENSDNOG00000044260) #28	HOXD12 (ENSDNOG00000047700) #29	HOXD13 (ENSDNOG00000019799) #30	EVX2 (ENSDNOG00000019797) #31	ENSDNOG00000045361	LNPK (ENSDNOG00000039308) #32	ENSDNOG00000044678 #34	ATF2 (ENSDNOG00000015229) #35
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.e #34	ENSGT00940000156582 #35
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.p #20	ENSGT00390000010116.o #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.e #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Elephant	MODERN SPECIES	301	SESTD1 (ENSLAFG00000010863)	ENSLAFG00000016368	ENSLAFG00000030749 #7	ENSLAFG00000016250 ##11	PLEKHA3 (ENSLAFG00000006385) #12	FKBP7 (ENSLAFG00000016244) #13	PJVK (ENSLAFG00000016082) #14	PRKRA (ENSLAFG00000026940) #15	OSBPL6 (ENSLAFG00000011141) #16	RBM45 (ENSLAFG00000007464) #17	ENSLAFG00000027524	PDE11A (ENSLAFG00000005234) #18	ENSLAFG00000005704 #20	ENSLAFG00000014996 #20	AGPS (ENSLAFG00000014990) #21	NFE2L2 (ENSLAFG00000016263) #22	ENSLAFG00000027712	MTX2 (ENSLAFG00000013982) #24	HOXD3 (ENSLAFG00000005477)	HOXD4 (ENSLAFG00000005480)	HOXD8 (ENSLAFG00000004364)	HOXD9 (ENSLAFG00000011494)	HOXD10 (ENSLAFG00000013262) #27	HOXD12 (ENSLAFG00000017497) #29	HOXD13 (ENSLAFG00000027629) #30	EVX2 (ENSLAFG00000013264) #31	LNPK (ENSLAFG00000004502) #32	ENSLAFG00000010768 #34	ATF2 (ENSLAFG00000006463) #35	CHN1 (ENSLAFG00000011074) #36	CHRNA1 (ENSLAFG00000011067)
Hyrax	MODERN SPECIES	1360																NFE2L2 (ENSPCAG00000013845) #22
Tenrec	MODERN SPECIES	14990																NFE2L2 (ENSETEG00000001387) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000153458.B.b	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C.k #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00940000173501	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000153458.B.b	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C.k #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00940000173501	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT01100000263532.A.a.a.b.b.a.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b.a ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.o.a #23	ENSGT00950000182919.C.k #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00940000173501	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT01100000263532.A.a.a.a.b.c.b.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b.a ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850.fb #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00390000006051.d.b.a.a	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.o.a #23	ENSGT00950000182919.C.k.a #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00940000173501	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.a #34
Common wonbat	MODERN SPECIES	1018	ENSVURG00010018699 #7	ENSVURG00010018702 ##11	ENSVURG00010018707 ##11	ENSVURG00010018717 ##11	ENSVURG00010018731 #11	FKBP7 (ENSVURG00010018739) #13	PJVK (ENSVURG00010018750) #14	PRKRA (ENSVURG00010018771) #15	OSBPL6 (ENSVURG00010018808) #16	RBM45 (ENSVURG00010018862) #17	ENSVURG00010018867	PDE11A (ENSVURG00010018883) #18	ENSVURG00010018908 #20	AGPS (ENSVURG00010018947) #21	ENSVURG00010019089	NFE2L2 (ENSVURG00010019096) #22	ENSVURG00010019105 #23	ENSVURG00010019134	ENSVURG00010019141 #24	HOXD1 (ENSVURG00010019147) #26	HOXD3 (ENSVURG00010019148)	HOXD4 (ENSVURG00010019150)	HOXD8 (ENSVURG00010019156)	HOXD9 (ENSVURG00010019159)	HOXD10 (ENSVURG00010019165) #27	ENSVURG00010019168 #28	HOXD12 (ENSVURG00010019173) #29	HOXD13 (ENSVURG00010019176) #30	EVX2 (ENSVURG00010019179) #31	LNPK (ENSVURG00010019192) #32	ENSVURG00010019213 #34
koala	MODERN SPECIES	40	ENSPCIG00000011294 ##11	ENSPCIG00000035928 ##11	ENSPCIG00000011306 ##11	ENSPCIG00000025366 #11	ENSPCIG00000025368 #12	FKBP7 (ENSPCIG00000025369) #13	PJVK (ENSPCIG00000025370) #14	PRKRA (ENSPCIG00000025371) #15	OSBPL6 (ENSPCIG00000025378) #16	ENSPCIG00000025391	RBM45 (ENSPCIG00000025402) #17	PDE11A (ENSPCIG00000025405) #18	ENSPCIG00000025413 #20	AGPS (ENSPCIG00000025418) #21	ENSPCIG00000025432	NFE2L2 (ENSPCIG00000025438) #22	ENSPCIG00000025443 #23	ENSPCIG00000035345	ENSPCIG00000034180	MTX2 (ENSPCIG00000006277) #24	HOXD1 (ENSPCIG00000026501) #26	HOXD4 (ENSPCIG00000026503)	HOXD3 (ENSPCIG00000026502)	HOXD8 (ENSPCIG00000029145)	HOXD9 (ENSPCIG00000033878)	HOXD10 (ENSPCIG00000029143) #27	ENSPCIG00000034132 #28	HOXD12 (ENSPCIG00000029141) #29	HOXD13 (ENSPCIG00000029140) #30	EVX2 (ENSPCIG00000029139) #31	ENSPCIG00000034586
Wallaby	MODERN SPECIES	11787																NFE2L2 (ENSMEUG00000009798) #22
Tasmanian devil	MODERN SPECIES	2	CCDC141 (ENSSHAG00000012666)	ENSSHAG00000011991 ##11	ENSSHAG00000023191 ##11	ENSSHAG00000021730 ##11	ENSSHAG00000026623 ##11	PLEKHA3 (ENSSHAG00000010292) #12	FKBP7 (ENSSHAG00000010178) #13	PJVK (ENSSHAG00000010083) #14	PRKRA (ENSSHAG00000028806) #15	OSBPL6 (ENSSHAG00000007874) #16	RBM45 (ENSSHAG00000005667) #17	ENSSHAG00000005285	PDE11A (ENSSHAG00000030320) #18	AGPS (ENSSHAG00000018507) #21	ENSSHAG00000022926 #20	NFE2L2 (ENSSHAG00000018277) #22	HNRNPA3 (ENSSHAG00000022116) #23	MTX2 (ENSSHAG00000016381) #24	HOXD1 (ENSSHAG00000016187) #26	HOXD4 (ENSSHAG00000024760)	HOXD3 (ENSSHAG00000024332)	HOXD8 (ENSSHAG00000026470)	HOXD9 (ENSSHAG00000021426)	HOXD10 (ENSSHAG00000016004) #27	HOXD11 (ENSSHAG00000021515) #28	HOXD12 (ENSSHAG00000021387) #29	HOXD13 (ENSSHAG00000015915) #30	EVX2 (ENSSHAG00000015873) #31	LNPK (ENSSHAG00000031133) #32	ATP5MC3 (ENSSHAG00000028674) #34	ATF2 (ENSSHAG00000029247) #35
Opossum	MODERN SPECIES	3	ENSMODG00000042738 ##11	ENSMODG00000047084 ##11	ENSMODG00000039210 #11	PLEKHA3 (ENSMODG00000009871) #12	FKBP7 (ENSMODG00000009862) #13	PJVK (ENSMODG00000009854) #14	PRKRA (ENSMODG00000009823) #15	OSBPL6 (ENSMODG00000009796) #16	RBM45 (ENSMODG00000009742) #17	ENSMODG00000029563	ENSMODG00000037708	PDE11A (ENSMODG00000036430) #18	ENSMODG00000048807 #20	ENSMODG00000048757	AGPS (ENSMODG00000009686) #21	NFE2L2 (ENSMODG00000009624) #22	MTX2 (ENSMODG00000009617) #24	HOXD1 (ENSMODG00000009604) #26	HOXD3 (ENSMODG00000046524)	HOXD4 (ENSMODG00000009598)	HOXD8 (ENSMODG00000009593)	HOXD9 (ENSMODG00000009591)	HOXD10 (ENSMODG00000009577) #27	HOXD11 (ENSMODG00000009565) #28	HOXD12 (ENSMODG00000024741) #29	HOXD13 (ENSMODG00000009550) #30	EVX2 (ENSMODG00000009546) #31	ENSMODG00000009536 #32	ENSMODG00000047401	ENSMODG00000009520 #34	ATF2 (ENSMODG00000009514) #35
Platypus	MODERN SPECIES	20	SESTD1 (ENSOANG00000008646)	CCDC141 (ENSOANG00000008645)	ENSOANG00000045935 #7	ENSOANG00000008636 ##11	ENSOANG00000043772 ##11	ENSOANG00000045923 ##11	ENSOANG00000045033 ##11	PLEKHA3 (ENSOANG00000008635) #12	FKBP7 (ENSOANG00000044696) #13	PJVK (ENSOANG00000008632) #14	PRKRA (ENSOANG00000008630) #15	OSBPL6 (ENSOANG00000008628) #16	PDE11A (ENSOANG00000008626) #18	ENSOANG00000008625 #20	AGPS (ENSOANG00000008624) #21	NFE2L2 (ENSOANG00000039992) #22	HNRNPA3 (ENSOANG00000008622) #23	MTX2 (ENSOANG00000008621) #24	HOXD1 (ENSOANG00000043961) #26	HOXD3 (ENSOANG00000038024)	HOXD4 (ENSOANG00000037495)	HOXD8 (ENSOANG00000036079)	HOXD9 (ENSOANG00000008615)	HOXD10 (ENSOANG00000037187) #27	HOXD11 (ENSOANG00000048827) #28	HOXD12 (ENSOANG00000004743) #29	HOXD13 (ENSOANG00000043790) #30	EVX2 (ENSOANG00000042825) #31	LNPK (ENSOANG00000008614) #32	ATP5MC3 (ENSOANG00000046084) #34	ATF2 (ENSOANG00000008612) #35
Sauria	ANCESTRAL SPECIES		ENSGT01100000263523.J ##8	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Archelosauria	ANCESTRAL SPECIES	8	ENSGT01100000263523.H ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.E ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Archosauria	ANCESTRAL SPECIES	6	ENSGT01100000263523.G.a.a ##8	ENSGT01100000263523.H ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.E ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Aves	ANCESTRAL SPECIES	8	ENSGT01100000263523.B #8	ENSGT01100000263523.G.b ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Neognathae	ANCESTRAL SPECIES	6	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Galloanserae	ANCESTRAL SPECIES	7	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.E.q ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653.c.a	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Anatidae	ANCESTRAL SPECIES	10	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.E.q ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000157270	ENSGT00940000160027	ENSGT00940000161653.c.a	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Pink-footed goose	MODERN SPECIES	20	ENSABRG00000004203	ENSABRG00000004180 ##11	ENSABRG00000004141 ##11	ENSABRG00000004053 ##11	ENSABRG00000003603 ##8	ENSABRG00000003426 ##8	PLEKHA3 (ENSABRG00000003409) #12	FKBP7 (ENSABRG00000003404) #13	PJVK (ENSABRG00000003243) #14	OSBPL6 (ENSABRG00000003210) #16	RBM45 (ENSABRG00000003201) #17	ENSABRG00000003166	PDE11A (ENSABRG00000002784) #18	ENSABRG00000002659 #20	AGPS (ENSABRG00000002617) #21	NFE2L2 (ENSABRG00000002594) #22	HNRNPA3 (ENSABRG00000002552) #23	ENSABRG00000002541	MTX2 (ENSABRG00000002506) #24	HOXD1 (ENSABRG00000002496) #26	HOXD4 (ENSABRG00000002472)	HOXD3 (ENSABRG00000002455)	HOXD8 (ENSABRG00000002447)	HOXD9 (ENSABRG00000002443)	HOXD10 (ENSABRG00000002435) #27	HOXD11 (ENSABRG00000002426) #28	HOXD12 (ENSABRG00000002420) #29	HOXD13 (ENSABRG00000002397) #30	EVX2 (ENSABRG00000002357) #31	LNPK (ENSABRG00000002302) #32	ATP5MC3 (ENSABRG00000002218) #34
Duck	MODERN SPECIES	25	ENSAPLG00000017682 ##11	ENSAPLG00000022613 #7	ENSAPLG00000026953 ##8	ENSAPLG00000026806 ##8	ENSAPLG00000022307 ##8	ENSAPLG00000021067 ##8	PLEKHA3 (ENSAPLG00000013080) #12	FKBP7 (ENSAPLG00000013044) #13	PJVK (ENSAPLG00000012766) #14	OSBPL6 (ENSAPLG00000011717) #16	RBM45 (ENSAPLG00000011049) #17	ENSAPLG00000010932	ENSAPLG00000010831	ENSAPLG00000002228 #20	AGPS (ENSAPLG00000010251) #21	NFE2L2 (ENSAPLG00000010103) #22	HNRNPA3 (ENSAPLG00000009620) #23	MTX2 (ENSAPLG00000009123) #24	HOXD4 (ENSAPLG00000008983)	HOXD3 (ENSAPLG00000025122)	HOXD8 (ENSAPLG00000008959)	HOXD9 (ENSAPLG00000023656)	HOXD10 (ENSAPLG00000008956) #27	HOXD11 (ENSAPLG00000020921) #28	HOXD12 (ENSAPLG00000008820) #29	HOXD13 (ENSAPLG00000008742) #30	ENSAPLG00000021400	LNPK (ENSAPLG00000008383) #32	ATP5MC3 (ENSAPLG00000025020) #34	ATF2 (ENSAPLG00000007673) #35	CHN1 (ENSAPLG00000007680) #36
Phasianidae	ANCESTRAL SPECIES	8	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.I.a.b ##8	ENSGT01100000263523.H ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.E.q ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653.c.a	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.I.a.b ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.C.a.b ##8	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653.c.a	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Turkey	MODERN SPECIES	27	ENSMGAG00000021022 ##11	ENSMGAG00000022630 ##8	ENSMGAG00000020675 ##8	ENSMGAG00000021039 ##8	ENSMGAG00000021104 ##8	ENSMGAG00000018810 #7	PLEKHA3 (ENSMGAG00000009483) #12	FKBP7 (ENSMGAG00000018583) #13	PJVK (ENSMGAG00000009475) #14	OSBPL6 (ENSMGAG00000009454) #16	RBM45 (ENSMGAG00000009496) #17	ENSMGAG00000009612 #18	ENSMGAG00000009509 #20	ENSMGAG00000021341	AGPS (ENSMGAG00000009510) #21	NFE2L2 (ENSMGAG00000009534) #22	HNRNPA3 (ENSMGAG00000009565) #23	MTX2 (ENSMGAG00000009647) #24	ENSMGAG00000016851	ENSMGAG00000018655 #27	HOXD4 (ENSMGAG00000015896)	ENSMGAG00000018628	ENSMGAG00000017873	ENSMGAG00000018245	ENSMGAG00000011730	ENSMGAG00000011716	ENSMGAG00000011706	ENSMGAG00000011696	ENSMGAG00000011685	ENSMGAG00000011667	ENSMGAG00000011684
Chicken	MODERN SPECIES	36	UBE2E3 (ENSGALG00010026078)	CWC22 (ENSGALG00010026114)	ZNF385B (ENSGALG00010026154)	SESTD1 (ENSGALG00010026183)	CCDC141 (ENSGALG00010026242)	TTN (ENSGALG00010022969) #7	PLEKHA3 (ENSGALG00010023496) #12	FKBP7 (ENSGALG00010023533) #13	PJVK (ENSGALG00010023559) #14	OSBPL6 (ENSGALG00010023623) #16	RBM45 (ENSGALG00010023793) #17	ENSGALG00010023848	ENSGALG00010023920	TTC30B (ENSGALG00010026261) #20	AGPS (ENSGALG00010024011) #21	NFE2L2 (ENSGALG00010024107) #22	HNRNPA3 (ENSGALG00010024144) #23	MTX2 (ENSGALG00010024183) #24	HOXD3 (ENSGALG00010024724)	HOXD4 (ENSGALG00010024746)	HOXD8 (ENSGALG00010024753)	HOXD9 (ENSGALG00010024763)	HOXD10 (ENSGALG00010026746) #27	HOXD11 (ENSGALG00010024780) #28	HOXD12 (ENSGALG00010024782) #29	HOXD13 (ENSGALG00010024790) #30	EVX2 (ENSGALG00010025816) #31	LNPK (ENSGALG00010022433) #32	ATP5G3 (ENSGALG00010022456) #34	ATF2 (ENSGALG00010022485) #35	CHN1 (ENSGALG00010026697) #36
Japanese quail	MODERN SPECIES	25	ENSCJPG00005017339 ##8	ENSCJPG00005017340 ##8	ENSCJPG00005017341 ##8	ENSCJPG00005017342 ##8	ENSCJPG00005017343 ##8	PLEKHA3 (ENSCJPG00005017344) #12	ENSCJPG00005017345 #13	ENSCJPG00005017346 #13	PJVK (ENSCJPG00005017347) #14	OSBPL6 (ENSCJPG00005017349) #16	RBM45 (ENSCJPG00005017714) #17	ENSCJPG00005017715	PDE11A (ENSCJPG00005017716) #18	ENSCJPG00005017717 #20	AGPS (ENSCJPG00005017718) #21	NFE2L2 (ENSCJPG00005017719) #22	HNRNPA3 (ENSCJPG00005017720) #23	MTX2 (ENSCJPG00005017723) #24	HOXD1 (ENSCJPG00005017724) #26	HOXD3 (ENSCJPG00005017726)	HOXD4 (ENSCJPG00005017727)	HOXD8 (ENSCJPG00005017729)	HOXD9 (ENSCJPG00005017730)	HOXD10 (ENSCJPG00005017731) #27	HOXD11 (ENSCJPG00005017732) #28	HOXD12 (ENSCJPG00005017733) #29	HOXD13 (ENSCJPG00005017734) #30	EVX2 (ENSCJPG00005017735) #31	LNPK (ENSCJPG00005017736) #32	ATP5MC3 (ENSCJPG00005017742) #34	ATF2 (ENSCJPG00005017743) #35
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Passeriformes	ANCESTRAL SPECIES	6	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Great tit	MODERN SPECIES	27	ENSPMJG00000018390 ##11	ENSPMJG00000018396 ##8	ENSPMJG00000018397 ##8	ENSPMJG00000018398 ##8	ENSPMJG00000018399 #11	PLEKHA3 (ENSPMJG00000018400) #12	FKBP7 (ENSPMJG00000018401) #13	PJVK (ENSPMJG00000018402) #14	OSBPL6 (ENSPMJG00000018403) #16	RBM45 (ENSPMJG00000018404) #17	ENSPMJG00000018405	ENSPMJG00000018406	ENSPMJG00000018407 #18	ENSPMJG00000018408 #20	AGPS (ENSPMJG00000018409) #21	NFE2L2 (ENSPMJG00000018516) #22	HNRNPA3 (ENSPMJG00000018517) #23	MTX2 (ENSPMJG00000018521) #24	HOXD3 (ENSPMJG00000018522)	HOXD4 (ENSPMJG00000018523)	HOXD8 (ENSPMJG00000018525)	HOXD9 (ENSPMJG00000018527)	HOXD10 (ENSPMJG00000018528) #27	HOXD11 (ENSPMJG00000018529) #28	HOXD12 (ENSPMJG00000018530) #29	HOXD13 (ENSPMJG00000018531) #30	EVX2 (ENSPMJG00000018532) #31	LNPK (ENSPMJG00000018533) #32	ATP5MC3 (ENSPMJG00000018536) #34	ATF2 (ENSPMJG00000018537) #35	CHN1 (ENSPMJG00000018538) #36
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Flycatcher	MODERN SPECIES	26	ENSFALG00000023965 ##11	ENSFALG00000028245 ##8	ENSFALG00000026318 #8	ENSFALG00000026058 ##8	ENSFALG00000025310 ##8	ENSFALG00000028946 #7	ENSFALG00000023020 #11	PLEKHA3 (ENSFALG00000027197) #12	FKBP7 (ENSFALG00000003417) #13	PJVK (ENSFALG00000003412) #14	OSBPL6 (ENSFALG00000003369) #16	RBM45 (ENSFALG00000003330) #17	PDE11A (ENSFALG00000003284) #18	ENSFALG00000015252 #20	AGPS (ENSFALG00000003257) #21	NFE2L2 (ENSFALG00000003227) #22	HNRNPA3 (ENSFALG00000003215) #23	MTX2 (ENSFALG00000003201) #24	HOXD3 (ENSFALG00000003190)	HOXD4 (ENSFALG00000026047)	HOXD8 (ENSFALG00000027818)	HOXD9 (ENSFALG00000025965)	HOXD10 (ENSFALG00000003142) #27	HOXD11 (ENSFALG00000014318) #28	HOXD12 (ENSFALG00000003122) #29	HOXD13 (ENSFALG00000003118) #30	EVX2 (ENSFALG00000003109) #31	LNPK (ENSFALG00000003104) #32	ATP5MC3 (ENSFALG00000003095) #34	ATF2 (ENSFALG00000003087) #35	CHN1 (ENSFALG00000003058) #36
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Passeroidea	ANCESTRAL SPECIES	8	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263523.E ##8	ENSGT01100000263523.B #8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Common canary	MODERN SPECIES	8	ENSSCAG00000000211 ##8	ENSSCAG00000000177 ##8	ENSSCAG00000000135 ##8	ENSSCAG00000000118 ##8	ENSSCAG00000016286 ##8	PLEKHA3 (ENSSCAG00000016282) #12	ENSSCAG00000016281 #13	ENSSCAG00000016278 #13	PJVK (ENSSCAG00000016277) #14	OSBPL6 (ENSSCAG00000016275) #16	ENSSCAG00000016274	RBM45 (ENSSCAG00000016272) #17	ENSSCAG00000016248	ENSSCAG00000016236 #20	AGPS (ENSSCAG00000016170) #21	NFE2L2 (ENSSCAG00000016126) #22	HNRNPA3 (ENSSCAG00000016118) #23	MTX2 (ENSSCAG00000016113) #24	HOXD3 (ENSSCAG00000016112)	HOXD4 (ENSSCAG00000016111)	HOXD8 (ENSSCAG00000016107)	ENSSCAG00000016106	HOXD10 (ENSSCAG00000016104) #27	HOXD11 (ENSSCAG00000016103) #28	HOXD12 (ENSSCAG00000016102) #29	HOXD13 (ENSSCAG00000016098) #30	LNPK (ENSSCAG00000016094) #32	ATP5MC3 (ENSSCAG00000016089) #34	ATF2 (ENSSCAG00000016084) #35	CHN1 (ENSSCAG00000016062) #36	CHRNA1 (ENSSCAG00000016051)
Zebra finch	MODERN SPECIES	29	ENSTGUG00000026482 ##11	ENSTGUG00000026972 ##11	ENSTGUG00000022812 ##8	ENSTGUG00000020806 ##8	ENSTGUG00000022753 ##8	ENSTGUG00000026449 ##8	ENSTGUG00000025243 #8	ENSTGUG00000023205 #11	PLEKHA3 (ENSTGUG00000009194) #12	FKBP7 (ENSTGUG00000009189) #13	PJVK (ENSTGUG00000009184) #14	OSBPL6 (ENSTGUG00000009140) #16	RBM45 (ENSTGUG00000009116) #17	ENSTGUG00000009073	AGPS (ENSTGUG00000009031) #21	NFE2L2 (ENSTGUG00000009026) #22	HNRNPA3 (ENSTGUG00000008996) #23	MTX2 (ENSTGUG00000019630) #24	HOXD3 (ENSTGUG00000025792)	HOXD4 (ENSTGUG00000008959)	HOXD8 (ENSTGUG00000022095)	HOXD9 (ENSTGUG00000008955)	HOXD10 (ENSTGUG00000008948) #27	HOXD11 (ENSTGUG00000008941) #28	HOXD12 (ENSTGUG00000008938) #29	HOXD13 (ENSTGUG00000022083) #30	EVX2 (ENSTGUG00000008931) #31	LNPK (ENSTGUG00000021038) #32	ATP5MC3 (ENSTGUG00000008907) #34	ATF2 (ENSTGUG00000008880) #35	CHN1 (ENSTGUG00000008848) #36
Medium ground finch	MODERN SPECIES	1	ENSGFOG00000002584 ##8	ENSGFOG00000007233 ##8	ENSGFOG00000007209 ##8	ENSGFOG00000007202 ##8	ENSGFOG00000007184 ##8	ENSGFOG00000007175 #11	PLEKHA3 (ENSGFOG00000007165) #12	FKBP7 (ENSGFOG00000007132) #13	PJVK (ENSGFOG00000007120) #14	OSBPL6 (ENSGFOG00000007096) #16	RBM45 (ENSGFOG00000007073) #17	ENSGFOG00000007056	ENSGFOG00000007051 #18	ENSGFOG00000007048 #20	AGPS (ENSGFOG00000006623) #21	NFE2L2 (ENSGFOG00000006575) #22	HNRNPA3 (ENSGFOG00000006562) #23	MTX2 (ENSGFOG00000006557) #24	ENSGFOG00000006552	HOXD4 (ENSGFOG00000006548)	HOXD8 (ENSGFOG00000006540)	ENSGFOG00000006539	ENSGFOG00000006537	HOXD10 (ENSGFOG00000006531) #27	HOXD11 (ENSGFOG00000006526) #28	HOXD12 (ENSGFOG00000006522) #29	HOXD13 (ENSGFOG00000006517) #30	LNPK (ENSGFOG00000006507) #32	ATP5MC3 (ENSGFOG00000006500) #34	ATF2 (ENSGFOG00000006478) #35	ENSGFOG00000006464
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT01100000263532.A.a.a.a.b.c.a ##11	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.I.a.b ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.E ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a #36
Kakapo	MODERN SPECIES	22	ENSSHBG00005009083 ##11	ENSSHBG00005000726 ##11	ENSSHBG00005000750 #11	ENSSHBG00005000771 ##8	ENSSHBG00005000787 ##8	ENSSHBG00005000796 ##8	PLEKHA3 (ENSSHBG00005000809) #12	FKBP7 (ENSSHBG00005001990) #13	PJVK (ENSSHBG00005002010) #14	OSBPL6 (ENSSHBG00005002344) #16	RBM45 (ENSSHBG00005003026) #17	ENSSHBG00005003038	ENSSHBG00005003059	ENSSHBG00005003095 #20	AGPS (ENSSHBG00005003110) #21	NFE2L2 (ENSSHBG00005003133) #22	HNRNPA3 (ENSSHBG00005003156) #23	MTX2 (ENSSHBG00005003180) #24	HOXD3 (ENSSHBG00005003209)	HOXD4 (ENSSHBG00005003224)	HOXD8 (ENSSHBG00005003238)	HOXD9 (ENSSHBG00005003249)	HOXD10 (ENSSHBG00005003256) #27	HOXD11 (ENSSHBG00005003263) #28	HOXD12 (ENSSHBG00005003274) #29	HOXD13 (ENSSHBG00005003286) #30	EVX2 (ENSSHBG00005003303) #31	LNPK (ENSSHBG00005003318) #32	ATP5MC3 (ENSSHBG00005003340) #34	ATF2 (ENSSHBG00005003358) #35	CHN1 (ENSSHBG00005003384) #36
Golden eagle	MODERN SPECIES	22	ENSACCG00020003250 ##11	ENSACCG00020003292 ##8	ENSACCG00020003357 ##8	ENSACCG00020003401 ##8	ENSACCG00020003422 ##8	ENSACCG00020003442 #11	PLEKHA3 (ENSACCG00020003458) #12	FKBP7 (ENSACCG00020003479) #13	PJVK (ENSACCG00020003494) #14	OSBPL6 (ENSACCG00020003534) #16	RBM45 (ENSACCG00020003596) #17	ENSACCG00020003614	ENSACCG00020003639	ENSACCG00020003656 #20	AGPS (ENSACCG00020003672) #21	NFE2L2 (ENSACCG00020003695) #22	HNRNPA3 (ENSACCG00020003720) #23	MTX2 (ENSACCG00020003762) #24	HOXD3 (ENSACCG00020003777)	HOXD4 (ENSACCG00020003785)	HOXD8 (ENSACCG00020003802)	HOXD9 (ENSACCG00020003811)	HOXD10 (ENSACCG00020003829) #27	HOXD11 (ENSACCG00020003844) #28	HOXD12 (ENSACCG00020003850) #29	HOXD13 (ENSACCG00020003861) #30	EVX2 (ENSACCG00020003885) #31	LNPK (ENSACCG00020003901) #32	ATP5MC3 (ENSACCG00020003917) #34	ATF2 (ENSACCG00020003942) #35	CHN1 (ENSACCG00020003968) #36
African ostrich	MODERN SPECIES	152											RBM45 (ENSSCUG00000003150) #17	ENSSCUG00000003143	PDE11A (ENSSCUG00000003133) #18	ENSSCUG00000003126 #20	AGPS (ENSSCUG00000003124) #21	NFE2L2 (ENSSCUG00000003120) #22	HNRNPA3 (ENSSCUG00000003116) #23
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005013581	ENSCPRG00005013585 #11	ENSCPRG00005013594 ##8	ENSCPRG00005013604 ##8	ENSCPRG00005013628 ##8	PLEKHA3 (ENSCPRG00005013653) #12	ENSCPRG00005013671 ##8	ENSCPRG00005013675 #11	FKBP7 (ENSCPRG00005013688) #13	OSBPL6 (ENSCPRG00005013696) #16	RBM45 (ENSCPRG00005013721) #17	ENSCPRG00005013733	ENSCPRG00005013750	ENSCPRG00005013775 #20	AGPS (ENSCPRG00005013779) #21	NFE2L2 (ENSCPRG00005013780) #22	HNRNPA3 (ENSCPRG00005013786) #23	ENSCPRG00005013800	MTX2 (ENSCPRG00005013807) #24	HOXD1 (ENSCPRG00005013818) #26	HOXD3 (ENSCPRG00005013823)	HOXD4 (ENSCPRG00005013826)	HOXD8 (ENSCPRG00005013830)	HOXD9 (ENSCPRG00005013832)	HOXD10 (ENSCPRG00005013834) #27	HOXD11 (ENSCPRG00005013836) #28	HOXD12 (ENSCPRG00005013839) #29	HOXD13 (ENSCPRG00005013840) #30	EVX2 (ENSCPRG00005013841) #31	LNPK (ENSCPRG00005013854) #32	ATP5MC3 (ENSCPRG00005013858) #34
Cryptodira	ANCESTRAL SPECIES	5	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.E ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.E ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964.c #13	ENSGT00940000159964.d #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Emydidae	ANCESTRAL SPECIES	4	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.E ##8	ENSGT00940000155850 #12	ENSGT00940000159964.c #13	ENSGT00940000159964.d #13	ENSGT00950000183140.a.b.c #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
painted turtle	MODERN SPECIES	2363	ENSCPBG00000002467 #11	ENSCPBG00000002548 ##8	ENSCPBG00000002601 ##8	ENSCPBG00000002702 ##8	ENSCPBG00000002842 ##8	PLEKHA3 (ENSCPBG00000003014) #12	ENSCPBG00000003031 #13	ENSCPBG00000003042 #13	ENSCPBG00000003060 #14	OSBPL6 (ENSCPBG00000003121) #16	RBM45 (ENSCPBG00000003246) #17	ENSCPBG00000003254	ENSCPBG00000003283	ENSCPBG00000003305 #20	AGPS (ENSCPBG00000003348) #21	NFE2L2 (ENSCPBG00000003397) #22	HNRNPA3 (ENSCPBG00000003430) #23	MTX2 (ENSCPBG00000003480) #24	HOXD1 (ENSCPBG00000003489) #26	HOXD3 (ENSCPBG00000003500)	HOXD4 (ENSCPBG00000003507)	HOXD8 (ENSCPBG00000003524)	ENSCPBG00000003539	HOXD10 (ENSCPBG00000003567) #27	HOXD11 (ENSCPBG00000003578) #28	HOXD12 (ENSCPBG00000003590) #29	HOXD13 (ENSCPBG00000003603) #30	EVX2 (ENSCPBG00000003612) #31	LNPK (ENSCPBG00000003649) #32	ENSCPBG00000003699	ATP5MC3 (ENSCPBG00000003721) #34
Three-toed box turtle	MODERN SPECIES	25	ENSTMTG00000017734 ##8	ENSTMTG00000017718 ##8	ENSTMTG00000017593 ##8	ENSTMTG00000017496 ##11	ENSTMTG00000017378 ##8	PLEKHA3 (ENSTMTG00000017351) #12	FKBP7 (ENSTMTG00000017327) #13	PJVK (ENSTMTG00000017294) #14	PRKRA (ENSTMTG00000017277) #15	OSBPL6 (ENSTMTG00000016769) #16	RBM45 (ENSTMTG00000016722) #17	ENSTMTG00000016712	ENSTMTG00000016667	ENSTMTG00000016654 #20	AGPS (ENSTMTG00000016599) #21	NFE2L2 (ENSTMTG00000016586) #22	HNRNPA3 (ENSTMTG00000016553) #23	MTX2 (ENSTMTG00000016539) #24	HOXD1 (ENSTMTG00000016527) #26	HOXD3 (ENSTMTG00000016516)	HOXD4 (ENSTMTG00000016507)	HOXD8 (ENSTMTG00000016482)	HOXD9 (ENSTMTG00000016450)	HOXD10 (ENSTMTG00000016440) #27	HOXD11 (ENSTMTG00000016420) #28	HOXD12 (ENSTMTG00000016406) #29	HOXD13 (ENSTMTG00000016398) #30	EVX2 (ENSTMTG00000016382) #31	LNPK (ENSTMTG00000016336) #32	ATP5MC3 (ENSTMTG00000016312) #34	ATF2 (ENSTMTG00000016268) #35
Testudinidae	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.a.a ##11	ENSGT01100000263532.A.a.a.a.b.c.b.c.a ##11	ENSGT01100000263523.G.a.a ##8	ENSGT01100000263523.E ##8	ENSGT00940000155850 #12	ENSGT00940000159964.c #13	ENSGT00940000159964.d #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a.a #36
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005018884 ##8	ENSGEVG00005018991 ##8	ENSGEVG00005019129 ##8	ENSGEVG00005019169 ##8	PLEKHA3 (ENSGEVG00005019213) #12	ENSGEVG00005019223 #13	ENSGEVG00005019232 #13	PJVK (ENSGEVG00005019241) #14	PRKRA (ENSGEVG00005019255) #15	OSBPL6 (ENSGEVG00005019328) #16	RBM45 (ENSGEVG00005019483) #17	ENSGEVG00005019493	ENSGEVG00005019504	ENSGEVG00005019518 #20	AGPS (ENSGEVG00005019755) #21	NFE2L2 (ENSGEVG00005020090) #22	HNRNPA3 (ENSGEVG00005020097) #23	MTX2 (ENSGEVG00005020106) #24	HOXD1 (ENSGEVG00005009340) #26	HOXD3 (ENSGEVG00005009410)	HOXD4 (ENSGEVG00005009454)	HOXD8 (ENSGEVG00005009500)	ENSGEVG00005009551	HOXD10 (ENSGEVG00005009665) #27	HOXD11 (ENSGEVG00005009700) #28	HOXD12 (ENSGEVG00005009748) #29	HOXD13 (ENSGEVG00005009780) #30	EVX2 (ENSGEVG00005009804) #31	LNPK (ENSGEVG00005009864) #32	ENSGEVG00005009994 #34	ATF2 (ENSGEVG00005010051) #35
Abingdon island giant tortoise	MODERN SPECIES	2642	ENSCABG00000018554 ##8	ENSCABG00000018552 ##8	ENSCABG00000018551 ##8	ENSCABG00000018550 ##8	ENSCABG00000018549 #11	PLEKHA3 (ENSCABG00000018548) #12	FKBP7 (ENSCABG00000018543) #13	PJVK (ENSCABG00000018540) #14	PRKRA (ENSCABG00000018538) #15	OSBPL6 (ENSCABG00000018068) #16	RBM45 (ENSCABG00000018047) #17	ENSCABG00000018044	ENSCABG00000018026	ENSCABG00000018022 #20	AGPS (ENSCABG00000018012) #21	NFE2L2 (ENSCABG00000018010) #22	HNRNPA3 (ENSCABG00000018007) #23	ENSCABG00000018005	RPRM (ENSCABG00000018004)
Chinese turtle	MODERN SPECIES	780	TTN (ENSPSIG00000011160) #7	ENSPSIG00000002792 #12	FKBP7 (ENSPSIG00000002815) #13	ENSPSIG00000001476 #14	ENSPSIG00000002819 #14	PRKRA (ENSPSIG00000002848) #15	ENSPSIG00000002859 #16	ENSPSIG00000002862 #16	ENSPSIG00000002871 #16	RBM45 (ENSPSIG00000002884) #17	ENSPSIG00000002892	ENSPSIG00000002895	ENSPSIG00000002897 #18	ENSPSIG00000001485 #20	AGPS (ENSPSIG00000002901) #21	NFE2L2 (ENSPSIG00000003007) #22	ENSPSIG00000001493	HNRNPA3 (ENSPSIG00000003011) #23	ENSPSIG00000001503	MTX2 (ENSPSIG00000003052) #24	HOXD1 (ENSPSIG00000003058) #26	HOXD3 (ENSPSIG00000003067)	HOXD4 (ENSPSIG00000003079)	HOXD10 (ENSPSIG00000003088) #27	HOXD11 (ENSPSIG00000003098) #28	HOXD12 (ENSPSIG00000003112) #29	HOXD13 (ENSPSIG00000003141) #30	EVX2 (ENSPSIG00000003143) #31	LNPK (ENSPSIG00000003146) #32	ATP5MC3 (ENSPSIG00000003200) #34	ATF2 (ENSPSIG00000003225) #35
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT01100000263523.C.a.b ##8	ENSGT01100000263523.E ##8	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Episquamata	ANCESTRAL SPECIES		ENSGT01100000263532.A.a.a.b.b.a.a ##11	ENSGT01100000263532.A.a.a.b.b.a.b.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Toxicofera	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.b ##11	ENSGT01100000263532.A.a.b ##11	ENSGT01100000263532.A.a.a.b.b.a.b.b ##11	ENSGT01100000263532.A.a.a.a.b.c.b ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Elapidae	ANCESTRAL SPECIES		ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.d ##11	ENSGT01100000263532.B ##11	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.e.a.d	ENSGT00940000162151 #18	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a.c #36
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.a.b.d ##11	ENSGT01100000263532.B ##11	ENSGT01100000263523.I.a.b.a ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.e.a.d	ENSGT00940000162151 #18	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.lc #34	ENSGT00940000156582 #35	ENSGT01000000218334
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT01100000263532.B ##11	ENSGT01100000263532.A.a.a.a.b.d ##11	ENSGT01100000263523.I.a.b.a ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.e.a.d	ENSGT00940000162151 #18	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a.lc #34	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.a.a.c #36
Eastern brown snake	MODERN SPECIES	7	ENSPTXG00000003569 ##11	ENSPTXG00000003571 ##8	ENSPTXG00000003573 ##8	ENSPTXG00000003574 #11	ENSPTXG00000003575 ##8	ENSPTXG00000003576 #12	FKBP7 (ENSPTXG00000003577) #13	PJVK (ENSPTXG00000003578) #14	PRKRA (ENSPTXG00000003579) #15	OSBPL6 (ENSPTXG00000003580) #16	ENSPTXG00000003584	PDE11A (ENSPTXG00000003586) #18	ENSPTXG00000003587 #20	ENSPTXG00000003590 #20	AGPS (ENSPTXG00000003592) #21	NFE2L2 (ENSPTXG00000003594) #22	ENSPTXG00000003601	MTX2 (ENSPTXG00000003605) #24	HOXD1 (ENSPTXG00000003611) #26	HOXD3 (ENSPTXG00000003613)	HOXD4 (ENSPTXG00000003615)	HOXD8 (ENSPTXG00000003619)	HOXD9 (ENSPTXG00000003620)	HOXD10 (ENSPTXG00000003623) #27	HOXD13 (ENSPTXG00000000024) #30	EVX2 (ENSPTXG00000000029) #31	LNPK (ENSPTXG00000000058) #32	ENSPTXG00000000082 #34	ATF2 (ENSPTXG00000000105) #35	CHN1 (ENSPTXG00000000161) #36	CHRNA1 (ENSPTXG00000000220)
Mainland tiger snake	MODERN SPECIES	21	ENSNSUG00000015622 ##8	ENSNSUG00000015623 ##11	ENSNSUG00000015624 #11	ENSNSUG00000015625 #7	PLEKHA3 (ENSNSUG00000015626) #12	FKBP7 (ENSNSUG00000015627) #13	PJVK (ENSNSUG00000015628) #14	ENSNSUG00000015629 #15	ENSNSUG00000015630 #15	OSBPL6 (ENSNSUG00000015631) #16	ENSNSUG00000015966	PDE11A (ENSNSUG00000015967) #18	ENSNSUG00000015968 #20	ENSNSUG00000015969 #20	AGPS (ENSNSUG00000015970) #21	NFE2L2 (ENSNSUG00000016001) #22	ENSNSUG00000016003
Blue-lipped sea krait	MODERN SPECIES	1351																NFE2L2 (ENSLLTG00000004478) #22	ENSLLTG00000004463
Indian cobra	MODERN SPECIES		ENSNNAG00000000007 #11	ENSNNAG00000000016 ##8	ENSNNAG00000000027 ##8	ENSNNAG00000000030 ##8	ENSNNAG00000000032 ##8	ENSNNAG00000000033 #11	PLEKHA3 (ENSNNAG00000000036) #12	FKBP7 (ENSNNAG00000000038) #13	PJVK (ENSNNAG00000000041) #14	OSBPL6 (ENSNNAG00000000050) #16	PRKRA (ENSNNAG00000000071) #15	ENSNNAG00000000074	PDE11A (ENSNNAG00000000076) #18	ENSNNAG00000000080 #20	AGPS (ENSNNAG00000000082) #21	NFE2L2 (ENSNNAG00000000084) #22	ENSNNAG00000000087	MTX2 (ENSNNAG00000000088) #24	ENSNNAG00000000090	HOXD1 (ENSNNAG00000000092) #26	HOXD3 (ENSNNAG00000000093)	HOXD4 (ENSNNAG00000000094)	HOXD8 (ENSNNAG00000000096)	HOXD9 (ENSNNAG00000000098)	HOXD10 (ENSNNAG00000000100) #27	HOXD11 (ENSNNAG00000000101) #28	HOXD13 (ENSNNAG00000000102) #30	EVX2 (ENSNNAG00000000104) #31	LNPK (ENSNNAG00000000108) #32	ATP5MC3 (ENSNNAG00000000110) #34	ATF2 (ENSNNAG00000000112) #35
Lizard	MODERN SPECIES	1024												ENSACAG00000029156	PDE11A (ENSACAG00000012077) #18	ENSACAG00000012154 #20	AGPS (ENSACAG00000012169) #21	NFE2L2 (ENSACAG00000012216) #22	ENSACAG00000012234	ENSACAG00000042605
Laterata	ANCESTRAL SPECIES	30	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.b ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #18	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35
Common wall lizard	MODERN SPECIES		ENSPMRG00000003284 ##8	ENSPMRG00000003298 ##8	ENSPMRG00000003318 ##8	ENSPMRG00000003366 ##8	ENSPMRG00000003374 ##8	ENSPMRG00000003385 #11	PLEKHA3 (ENSPMRG00000003392) #12	FKBP7 (ENSPMRG00000003396) #13	PJVK (ENSPMRG00000003405) #14	ENSPMRG00000003417 #15	OSBPL6 (ENSPMRG00000003515) #16	ENSPMRG00000004105	PDE11A (ENSPMRG00000004113) #18	ENSPMRG00000004125 #20	AGPS (ENSPMRG00000004129) #21	NFE2L2 (ENSPMRG00000004147) #22	HNRNPA3 (ENSPMRG00000004153) #23	MTX2 (ENSPMRG00000004174) #24	HOXD1 (ENSPMRG00000004218) #26	HOXD3 (ENSPMRG00000004224)	HOXD4 (ENSPMRG00000004227)	HOXD8 (ENSPMRG00000004233)	HOXD10 (ENSPMRG00000004241) #27	HOXD11 (ENSPMRG00000004246) #28	HOXD12 (ENSPMRG00000004249) #29	HOXD13 (ENSPMRG00000004253) #30	EVX2 (ENSPMRG00000004255) #31	LNPK (ENSPMRG00000004264) #32	ENSPMRG00000004309	ENSPMRG00000004311 #34	ATF2 (ENSPMRG00000004321) #35
Argentine black and white tegu	MODERN SPECIES	18	ENSSMRG00000018242 ##8	ENSSMRG00000018241 ##8	ENSSMRG00000018240 ##8	ENSSMRG00000018239 #11	PLEKHA3 (ENSSMRG00000018238) #12	FKBP7 (ENSSMRG00000018237) #13	ENSSMRG00000018236	PJVK (ENSSMRG00000018235) #14	PRKRA (ENSSMRG00000018234) #15	OSBPL6 (ENSSMRG00000018233) #16	ENSSMRG00000018232 #17	ENSSMRG00000018231 #17	ENSSMRG00000018230	ENSSMRG00000018228	AGPS (ENSSMRG00000018227) #21	NFE2L2 (ENSSMRG00000018226) #22	ENSSMRG00000018224	MTX2 (ENSSMRG00000018218) #24	HOXD1 (ENSSMRG00000018217) #26	HOXD4 (ENSSMRG00000018216)	HOXD3 (ENSSMRG00000018215)	HOXD8 (ENSSMRG00000018213)	HOXD9 (ENSSMRG00000018212)	HOXD10 (ENSSMRG00000018211) #27	HOXD11 (ENSSMRG00000018210) #28	HOXD12 (ENSSMRG00000018209) #29	HOXD13 (ENSSMRG00000018208) #30	EVX2 (ENSSMRG00000018207) #31	LNPK (ENSSMRG00000018206) #32	ENSSMRG00000018204 #34	ATF2 (ENSSMRG00000018203) #35
tuatara	MODERN SPECIES	1466	ENSSPUG00000006310	ENSSPUG00000006275 #7	ENSSPUG00000006245 ##11	ENSSPUG00000006235 #8	ENSSPUG00000006213 #11	PLEKHA3 (ENSSPUG00000006195) #12	ENSSPUG00000006183 #13	ENSSPUG00000006173 #13	PJVK (ENSSPUG00000006152) #14	PRKRA (ENSSPUG00000006140) #15	OSBPL6 (ENSSPUG00000005829) #16	RBM45 (ENSSPUG00000005740) #17	ENSSPUG00000005695	ENSSPUG00000005529	AGPS (ENSSPUG00000005469) #21	NFE2L2 (ENSSPUG00000005456) #22	HNRNPA3 (ENSSPUG00000005423) #23	MTX2 (ENSSPUG00000005399) #24	ENSSPUG00000005391	HOXD4 (ENSSPUG00000005347)	HOXD10 (ENSSPUG00000005271) #27	HOXD11 (ENSSPUG00000005263) #28	HOXD12 (ENSSPUG00000005253) #29	HOXD13 (ENSSPUG00000005247) #30	ENSSPUG00000005190	LNPK (ENSSPUG00000005091) #32
Anura	ANCESTRAL SPECIES	7	ENSGT01100000263523.G.a.b.b ##8	ENSGT01100000263523.G.a.a ##8	ENSGT01100000263523.J ##8	ENSGT01100000263523.I.a.a.b ##8	ENSGT01100000263523.F ##8	ENSGT01100000263532.C.c.b #11	ENSGT00940000155850 #12	ENSGT00940000159964 #13	ENSGT00950000183140.a.b #14	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #26	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161653	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34	ENSGT00940000156582 #35	ENSGT00940000156851
Frog	MODERN SPECIES	9	sp3 (ENSXETG00000008503)	ola1 (ENSXETG00000008500)	ENSXETG00000046285	sp9 (ENSXETG00000030987)	cir1 (ENSXETG00000036152)	scrn3 (ENSXETG00000008487)	gpr155 (ENSXETG00000008486)	ENSXETG00000046227	wipf1 (ENSXETG00000008476)	chrna1.2 (ENSXETG00000044131)	cyct (ENSXETG00000008472)	ENSXETG00000008473	pde11a (ENSXETG00000008465)	agps (ENSXETG00000008462) #21	ENSXETG00000045596	nfe2l2 (ENSXETG00000001808) #22	hnrnpa3 (ENSXETG00000001806)	ENSXETG00000047117	mtx2 (ENSXETG00000001802) #24	hoxd1 (ENSXETG00000001801) #26	hoxd3 (ENSXETG00000037804)	HOXD4 (ENSXETG00000001799)	hoxd8 (ENSXETG00000040128)	ENSXETG00000043675	ENSXETG00000027973	hoxd10 (ENSXETG00000032416) #28	hoxd9 (ENSXETG00000045288)	hoxd13 (ENSXETG00000007575) #30	evx2 (ENSXETG00000040812) #31	lnpk (ENSXETG00000007570) #32	chn1 (ENSXETG00000015003) #35
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000029796 ##11	ENSLLEG00000029681 ##8	ENSLLEG00000029480 ##8	ENSLLEG00000029336 #11	PLEKHA3 (ENSLLEG00000029298) #12	FKBP7 (ENSLLEG00000029265) #13	PJVK (ENSLLEG00000029208) #14	PRKRA (ENSLLEG00000029174) #15	OSBPL6 (ENSLLEG00000029061) #16	RBM45 (ENSLLEG00000029039) #17	ENSLLEG00000029028	ENSLLEG00000029018	ENSLLEG00000028901	AGPS (ENSLLEG00000028535) #21	ENSLLEG00000028487	NFE2L2 (ENSLLEG00000028454) #22	ENSLLEG00000028371	ENSLLEG00000028342	ENSLLEG00000028331	ENSLLEG00000028320	ENSLLEG00000028308	ENSLLEG00000028297	MTX2 (ENSLLEG00000028232) #24	HOXD1 (ENSLLEG00000028203) #26	HOXD3 (ENSLLEG00000028179)	HOXD4 (ENSLLEG00000028161)	ENSLLEG00000028121	HOXD9 (ENSLLEG00000028108)	HOXD10 (ENSLLEG00000028079) #27	HOXD11 (ENSLLEG00000028065) #28	HOXD13 (ENSLLEG00000028045) #30
Coelacanth	MODERN SPECIES	1329														ENSLACG00000011387	AGPS (ENSLACG00000009477) #21	NFE2L2 (ENSLACG00000008795) #22	hnrnpa3 (ENSLACG00000008189)
Actinopterygii	ANCESTRAL SPECIES		ENSGT00940000157043	ENSGT00940000155558	ENSGT00940000165507	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000157315	ENSGT00940000155029.c.a	ENSGT00940000155029.d	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000154298.a.a #34
Reedfish	MODERN SPECIES	16	ENSECRG00000006782	dnajc10 (ENSECRG00000006818)	FRZB (ENSECRG00000006860)	nckap1 (ENSECRG00000006892)	dusp19a (ENSECRG00000006923)	nup35 (ENSECRG00000006932)	ZNF804A (ENSECRG00000006941)	zc3h15 (ENSECRG00000006952)	itgav (ENSECRG00000006970)	prkra (ENSECRG00000006994) #15	OSBPL6 (ENSECRG00000007023) #16	rbm45 (ENSECRG00000007051) #17	cycsb (ENSECRG00000007063)	ENSECRG00000007074	agps (ENSECRG00000007162) #21	nfe2l2a (ENSECRG00000007884) #22	hnrnpa3 (ENSECRG00000007907)	mtx2 (ENSECRG00000007929) #24	ENSECRG00000007947	ENSECRG00000007959	hoxd3a (ENSECRG00000007970)	hoxd4a (ENSECRG00000007976)	ENSECRG00000007986	ENSECRG00000008002	ENSECRG00000008011	hoxd11a (ENSECRG00000008022) #28	lnpa (ENSECRG00000008030) #32	atp5mc3a (ENSECRG00000008050) #34	ATF2 (ENSECRG00000008091) #35	ENSECRG00000008152 ##36	chrna1 (ENSECRG00000008273)
Neopterygii	ANCESTRAL SPECIES	1	ENSGT00940000160494	ENSGT00390000016619.a	ENSGT00940000156472	ENSGT00940000165507	ENSGT00940000155558	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000155029.d	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859 #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36
Spotted gar	MODERN SPECIES	650	PDE1A (ENSLOCG00000006602)	dusp19a (ENSLOCG00000006612)	nckap1 (ENSLOCG00000006648)	FRZB (ENSLOCG00000006669)	dnajc10 (ENSLOCG00000006697)	nup35 (ENSLOCG00000006726)	znf804a (ENSLOCG00000006742)	zc3h15 (ENSLOCG00000006786)	itgav (ENSLOCG00000006805)	prkra (ENSLOCG00000006829) #15	OSBPL6 (ENSLOCG00000006831) #16	rbm45 (ENSLOCG00000006862) #17	cycsb (ENSLOCG00000006902)	ENSLOCG00000006915	agps (ENSLOCG00000006956) #21	nfe2l2a (ENSLOCG00000006972) #22	hnrnpa3 (ENSLOCG00000006986)	mtx2 (ENSLOCG00000007000) #24	ENSLOCG00000007019	ENSLOCG00000007028	hoxd3a (ENSLOCG00000007043)	hoxd4a (ENSLOCG00000007074)	ENSLOCG00000007085	ENSLOCG00000007106	hoxd10a (ENSLOCG00000007118) #27	hoxd11a (ENSLOCG00000007133) #28	hoxd12a (ENSLOCG00000007146) #29	HOXD13 (ENSLOCG00000007161) #30	evx2 (ENSLOCG00000007179) #31	lnpk (ENSLOCG00000007190) #32	ENSLOCG00000007211
Osteoglossocephalai	ANCESTRAL SPECIES	6	ENSGT00940000156472.c	ENSGT00390000016619.a	ENSGT00940000165507	ENSGT00940000155558	ENSGT00390000005923	ENSGT00940000160909	ENSGT00390000015818	ENSGT00940000158361	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.a	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851	ENSGT00910000144296
Osteoglossiformes	ANCESTRAL SPECIES	56	ENSGT00940000160192	ENSGT00940000157043	ENSGT00940000156472.c	ENSGT00390000016619.a.d	ENSGT00940000165507	ENSGT00940000155558.b	ENSGT00390000005923	ENSGT00940000160909.c	ENSGT00390000015818	ENSGT00940000158361.a	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.a	ENSGT00940000164264	ENSGT00940000156112.h.b #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.a ##36	ENSGT00910000144296.a	ENSGT00390000004153
Asian bonytongue	MODERN SPECIES	13	ENSSFOG00015002685	PDE1A (ENSSFOG00015002641)	dusp19b (ENSSFOG00015031775)	nckap1 (ENSSFOG00015002478)	frzb (ENSSFOG00015002469)	dnajc10 (ENSSFOG00015002441)	nup35 (ENSSFOG00015002390)	znf804a (ENSSFOG00015002338)	zc3h15 (ENSSFOG00015002295)	itgav (ENSSFOG00015002170)	prkra (ENSSFOG00015002157) #15	OSBPL6 (ENSSFOG00015001959) #16	cycsb (ENSSFOG00015001939)	ENSSFOG00015001871	agps (ENSSFOG00015028351) #21	nfe2l2a (ENSSFOG00015001827) #22	hnrnpa3 (ENSSFOG00015001814)	hoxd3a (ENSSFOG00015001794)	hoxd4a (ENSSFOG00015001803)	hoxd9a (ENSSFOG00015001780)	hoxd10a (ENSSFOG00015001740) #27	hoxd11a (ENSSFOG00015001728) #28	hoxd12a (ENSSFOG00015030881) #29	evx2 (ENSSFOG00015026350) #31	LNPK (ENSSFOG00015027388) #32	atp5mc3a (ENSSFOG00015001666) ##34	ATF2 (ENSSFOG00015001611) #35	ENSSFOG00015001599 ##36	chrna1 (ENSSFOG00015001557)	wipf1a (ENSSFOG00015001460)	GPR155 (ENSSFOG00015001445)
P. kingsleyae	MODERN SPECIES	66	dusp19b (ENSPKIG00000021766)	NCKAP1 (ENSPKIG00000021822)	frzb (ENSPKIG00000021917)	ENSPKIG00000021944	ENSPKIG00000021988	nup35 (ENSPKIG00000022051)	znf804a (ENSPKIG00000022091)	ENSPKIG00000022111	zc3h15 (ENSPKIG00000022132)	itgav (ENSPKIG00000022190)	prkra (ENSPKIG00000022368) #15	OSBPL6 (ENSPKIG00000022440) #16	cycsb (ENSPKIG00000022585)	ENSPKIG00000022607	agps (ENSPKIG00000022723) #21	nfe2l2a (ENSPKIG00000022873) #22	hnrnpa3 (ENSPKIG00000022916)	hoxd3a (ENSPKIG00000022968)	hoxd4a (ENSPKIG00000022999)	ENSPKIG00000023010	hoxd10a (ENSPKIG00000023022) #27	hoxd11a (ENSPKIG00000023029) #28	hoxd12a (ENSPKIG00000023038) #29	HOXD13 (ENSPKIG00000023045) #30	evx2 (ENSPKIG00000023055) #31	lnpk (ENSPKIG00000023083) #32	ENSPKIG00000023124	ATF2 (ENSPKIG00000023136) #35	chn1 (ENSPKIG00000023161) ##36	wipf1a (ENSPKIG00000023181)	GPR155 (ENSPKIG00000023215)
Clupeocephala	ANCESTRAL SPECIES	3	ENSGT00970000193449	ENSGT00440000037606.b	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.a	ENSGT00390000003271	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000159503	ENSGT00940000158354.c.a	ENSGT00940000165065.b	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35
Euteleosteomorpha	ANCESTRAL SPECIES	6	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000157883.a.a	ENSGT01030000234992	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000159503	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c
Acanthomorphata	ANCESTRAL SPECIES	5	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Euacanthomorphacea	ANCESTRAL SPECIES	15	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Percomorphaceae	ANCESTRAL SPECIES	23	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Percomorphaceae_B	ANCESTRAL SPECIES	17	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Ovalentaria	ANCESTRAL SPECIES	14	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Ovalentaria_B	ANCESTRAL SPECIES	12	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Pomacentridae	ANCESTRAL SPECIES	17	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Pomacentridae_A	ANCESTRAL SPECIES	14	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Amphiprion	ANCESTRAL SPECIES	8	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Clown anemonefish	MODERN SPECIES	1671													cycsb (ENSAOCG00000000127)	ENSAOCG00000000142	agps (ENSAOCG00000004061) #21	nfe2l2a (ENSAOCG00000004080) #22	hnrnpa3 (ENSAOCG00000004095)	hoxd3a (ENSAOCG00000004108)	hoxd4a (ENSAOCG00000004119)	hoxd9a (ENSAOCG00000004139)	hoxd10a (ENSAOCG00000000148) #27	hoxd11a (ENSAOCG00000004171) #28	hoxd12a (ENSAOCG00000004179) #29	evx2 (ENSAOCG00000004188) #31	lnpa (ENSAOCG00000004196) #32	ENSAOCG00000004206	ATF2 (ENSAOCG00000004218) #35	ENSAOCG00000004256 ##36	CHRNA1 (ENSAOCG00000000151)
Orange clownfish	MODERN SPECIES	3	DOCK9 (ENSAPEG00000023247)	SLC15A1 (ENSAPEG00000022998)	STK24 (ENSAPEG00000022931)	INO80D (ENSAPEG00000022901)	NDUFS1 (ENSAPEG00000022881)	ENSAPEG00000022870	CMKLR2 (ENSAPEG00000022864)	ADAM23 (ENSAPEG00000022814)	FAM237A (ENSAPEG00000022800)	ENSAPEG00000022793	prkra (ENSAPEG00000022769) #15	OSBPL6 (ENSAPEG00000022704) #16	cycsb (ENSAPEG00000022678)	ENSAPEG00000022643	agps (ENSAPEG00000022568) #21	nfe2l2a (ENSAPEG00000022542) #22	hnrnpa3 (ENSAPEG00000022522)	hoxd3a (ENSAPEG00000022493)	hoxd4a (ENSAPEG00000022483)	hoxd9a (ENSAPEG00000022404)	hoxd10a (ENSAPEG00000022375) #27	hoxd11a (ENSAPEG00000022361) #28	hoxd12a (ENSAPEG00000022350) #29	evx2 (ENSAPEG00000022340) #31	lnpa (ENSAPEG00000022331) #32	ENSAPEG00000022317	ATF2 (ENSAPEG00000022256) #35	ENSAPEG00000022232 ##36	CHRNA1 (ENSAPEG00000022209)	GPR155 (ENSAPEG00000022183)	scrn3 (ENSAPEG00000022151)
Spiny chromis	MODERN SPECIES	1481														ENSAPOG00000003421	agps (ENSAPOG00000003487) #21	nfe2l2a (ENSAPOG00000003497) #22	hnrnpa3 (ENSAPOG00000003641)	hnrnpa3 (ENSAPOG00000003688)
Bicolor damselfish	MODERN SPECIES	46												OSBPL6 (ENSSPAG00000008749) #16	cycsb (ENSSPAG00000008808)	ENSSPAG00000008821	agps (ENSSPAG00000008871) #21	nfe2l2a (ENSSPAG00000008945) #22	hnrnpa3 (ENSSPAG00000008969)	hoxd3a (ENSSPAG00000009001)	hoxd4a (ENSSPAG00000009010)
Cichlidae	ANCESTRAL SPECIES	14	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	15	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c.d	ENSGT00390000013474.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	14	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c.d	ENSGT00390000004153.c.c
Haplochromini	ANCESTRAL SPECIES	19	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c.d	ENSGT00390000004153.c.c
Haplochromini_A	ANCESTRAL SPECIES	19	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c.d	ENSGT00390000004153.c.c
Haplochromini_B	ANCESTRAL SPECIES	17	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c.d	ENSGT00390000004153.c.c
Eastern happy	MODERN SPECIES	7	DOCK9 (ENSACLG00000007989)	SLC15A1 (ENSACLG00000008071)	STK24 (ENSACLG00000008226)	INO80D (ENSACLG00000008245)	NDUFS1 (ENSACLG00000008263)	CMKLR2 (ENSACLG00000008289)	ADAM23 (ENSACLG00000008302)	FAM237A (ENSACLG00000008359)	ENSACLG00000008363	prkra (ENSACLG00000008370) #15	OSBPL6 (ENSACLG00000008382) #16	cycsb (ENSACLG00000008414)	ENSACLG00000008429	ENSACLG00000008459	agps (ENSACLG00000008469) #21	nfe2l2a (ENSACLG00000008524) #22	hnrnpa3 (ENSACLG00000008532)	hoxd3a (ENSACLG00000009027)	hoxd4a (ENSACLG00000009044)	hoxd9a (ENSACLG00000009056)	hoxd10a (ENSACLG00000009061) #27	hoxd11a (ENSACLG00000009065) #28	hoxd12a (ENSACLG00000009072) #29	evx2 (ENSACLG00000009083) #31	lnpa (ENSACLG00000009107) #32	ENSACLG00000009187	ATF2 (ENSACLG00000009228) #35	ENSACLG00000009384 ##36	CHRNA1 (ENSACLG00000009413)	GPR155 (ENSACLG00000009422)	ENSACLG00000009438
Zebra mbuna	MODERN SPECIES	1098	SLC15A1 (ENSMZEG00005003888)	STK24 (ENSMZEG00005004236)	INO80D (ENSMZEG00005004292)	NDUFS1 (ENSMZEG00005004312)	CMKLR2 (ENSMZEG00005004364)	ADAM23 (ENSMZEG00005004388)	FAM237A (ENSMZEG00005004441)	ENSMZEG00005004448	prkra (ENSMZEG00005004467) #15	OSBPL6 (ENSMZEG00005004482) #16	cycsb (ENSMZEG00005004503)	ENSMZEG00005004514	ENSMZEG00005004557	ENSMZEG00005004570	agps (ENSMZEG00005004577) #21	nfe2l2a (ENSMZEG00005004652) #22	hnrnpa3 (ENSMZEG00005004663)	hoxd3a (ENSMZEG00005004686)	hoxd4a (ENSMZEG00005004708)	hoxd9a (ENSMZEG00005004755)	hoxd10a (ENSMZEG00005004758) #27	hoxd11a (ENSMZEG00005004769) #28	hoxd12a (ENSMZEG00005004776) #29	evx2 (ENSMZEG00005004784) #31	lnpa (ENSMZEG00005004801) #32	ENSMZEG00005004810	ATF2 (ENSMZEG00005004846) #35	ENSMZEG00005004874 ##36	CHRNA1 (ENSMZEG00005004898)	GPR155 (ENSMZEG00005004929)	scrn3 (ENSMZEG00005004965)
P. nyererei	MODERN SPECIES	304	ENSPNYG00000010161	DOCK9 (ENSPNYG00000010016)	SLC15A1 (ENSPNYG00000009305)	STK24 (ENSPNYG00000009151)	INO80D (ENSPNYG00000009117)	NDUFS1 (ENSPNYG00000009027)	CMKLR2 (ENSPNYG00000009000)	ADAM23 (ENSPNYG00000008866)	FAM237A (ENSPNYG00000008832)	ENSPNYG00000008815	prkra (ENSPNYG00000008795) #15	OSBPL6 (ENSPNYG00000008732) #16	cycsb (ENSPNYG00000008720)	ENSPNYG00000008651	agps (ENSPNYG00000008574) #21	nfe2l2a (ENSPNYG00000008539) #22	hnrnpa3 (ENSPNYG00000008424)	hoxd4a (ENSPNYG00000008399)	hoxd3a (ENSPNYG00000008361)	hoxd9a (ENSPNYG00000008331)	hoxd10a (ENSPNYG00000008321) #27	hoxd11a (ENSPNYG00000008301) #28	hoxd12a (ENSPNYG00000008289) #29	evx2 (ENSPNYG00000008275) #31	lnpa (ENSPNYG00000008259) #32	ENSPNYG00000008239	ATF2 (ENSPNYG00000008206) #35	CHN1 (ENSPNYG00000008179) ##36	CHRNA1 (ENSPNYG00000008079)	GPR155 (ENSPNYG00000008006)	scrn3 (ENSPNYG00000007975)
Burton s mouthbrooder	MODERN SPECIES	311	ENSHBUG00000021296	DOCK9 (ENSHBUG00000021272)	SLC15A1 (ENSHBUG00000021092)	STK24 (ENSHBUG00000020466)	INO80D (ENSHBUG00000020389)	NDUFS1 (ENSHBUG00000020324)	CMKLR2 (ENSHBUG00000020271)	ADAM23 (ENSHBUG00000000617)	FAM237A (ENSHBUG00000020198)	ENSHBUG00000020184	prkra (ENSHBUG00000020169) #15	OSBPL6 (ENSHBUG00000020154) #16	cycsb (ENSHBUG00000019969)	ENSHBUG00000019959	agps (ENSHBUG00000019890) #21	nfe2l2a (ENSHBUG00000019783) #22	hnrnpa3 (ENSHBUG00000019734)	hoxd3a (ENSHBUG00000019721)	hoxd4a (ENSHBUG00000019706)	hoxd9a (ENSHBUG00000019700)	hoxd10a (ENSHBUG00000019695) #27	hoxd11a (ENSHBUG00000019686) #28	hoxd12a (ENSHBUG00000019677) #29	evx2 (ENSHBUG00000019668) #31	lnpa (ENSHBUG00000019639) #32	ENSHBUG00000019616	ATF2 (ENSHBUG00000019585) #35	CHN1 (ENSHBUG00000019527) ##36	CHRNA1 (ENSHBUG00000019492)	GPR155 (ENSHBUG00000019481)	scrn3 (ENSHBUG00000019469)
Lyretail cichlid	MODERN SPECIES	303	RAP2A (ENSNBRG00000009947)	FARP1 (ENSNBRG00000010082)	DOCK9 (ENSNBRG00000010144)	SLC15A1 (ENSNBRG00000010310)	ENSNBRG00000010594	INO80D (ENSNBRG00000010607)	NDUFS1 (ENSNBRG00000010636)	CMKLR2 (ENSNBRG00000010681)	ADAM23 (ENSNBRG00000010690)	ENSNBRG00000010757	prkra (ENSNBRG00000010819) #15	OSBPL6 (ENSNBRG00000010837) #16	cycsb (ENSNBRG00000010901)	ENSNBRG00000010922	agps (ENSNBRG00000010969) #21	nfe2l2a (ENSNBRG00000011018) #22	HNRNPA1L3 (ENSNBRG00000011082)	hoxd3a (ENSNBRG00000011248)	hoxd4a (ENSNBRG00000011276)	hoxd9a (ENSNBRG00000011305)	hoxd10a (ENSNBRG00000011309) #27	hoxd11a (ENSNBRG00000011341) #28	hoxd12a (ENSNBRG00000011364) #29	evx2 (ENSNBRG00000011378) #31	lnpa (ENSNBRG00000011403) #32	ENSNBRG00000011428	ATF2 (ENSNBRG00000011448) #35	ENSNBRG00000011504 ##36	CHRNA1 (ENSNBRG00000011535)	GPR155 (ENSNBRG00000011562)	ENSNBRG00000011602
Nile tilapia	MODERN SPECIES	7	FARP1 (ENSONIG00000008504)	DOCK9 (ENSONIG00000008513)	SLC15A1 (ENSONIG00000008539)	STK24 (ENSONIG00000008544)	INO80D (ENSONIG00000008551)	NDUFS1 (ENSONIG00000008555)	CMKLR2 (ENSONIG00000021104)	ADAM23 (ENSONIG00000008559)	FAM237A (ENSONIG00000034897)	ENSONIG00000008575	prkra (ENSONIG00000008579) #15	OSBPL6 (ENSONIG00000008582) #16	cycsb (ENSONIG00000039774)	ENSONIG00000008590	agps (ENSONIG00000008600) #21	nfe2l2a (ENSONIG00000008604) #22	hnrnpa3 (ENSONIG00000008607)	hoxd4a (ENSONIG00000008612)	hoxd3a (ENSONIG00000008610)	hoxd9 (ENSONIG00000035114)	hoxd10a (ENSONIG00000008614) #27	hoxd11 (ENSONIG00000040380) #28	hoxd12 (ENSONIG00000032619) #29	evx2 (ENSONIG00000008619) #31	lnpa (ENSONIG00000008621) #32	ENSONIG00000034657	ENSONIG00000008625	ATF2 (ENSONIG00000008629) #35	CHN1 (ENSONIG00000008634) ##36	CHRNA1 (ENSONIG00000008636)	GPR155 (ENSONIG00000039357)
Midas cichlid	MODERN SPECIES	998	FARP1 (ENSACIG00000019288)	DOCK9 (ENSACIG00000019562)	ENSACIG00000019680	STK24 (ENSACIG00000019694)	INO80D (ENSACIG00000019720)	NDUFS1 (ENSACIG00000019751)	CMKLR2 (ENSACIG00000019795)	ADAM23 (ENSACIG00000019821)	FAM237A (ENSACIG00000020010)	ENSACIG00000020017	prkra (ENSACIG00000020131) #15	OSBPL6 (ENSACIG00000020175) #16	cycsb (ENSACIG00000020213)	ENSACIG00000020221	agps (ENSACIG00000020269) #21	nfe2l2a (ENSACIG00000020313) #22	ENSACIG00000020389	hoxd3a (ENSACIG00000020552)	hoxd4a (ENSACIG00000020571)	hoxd9a (ENSACIG00000020595)	hoxd10a (ENSACIG00000020621) #27	hoxd11a (ENSACIG00000020645) #28	hoxd12a (ENSACIG00000020660) #29	evx2 (ENSACIG00000020665) #31	lnpa (ENSACIG00000000204) #32	ENSACIG00000000388	ATF2 (ENSACIG00000000401) #35	CHN1 (ENSACIG00000000442) ##36	CHRNA1 (ENSACIG00000000472)	GPR155 (ENSACIG00000000582)	scrn3 (ENSACIG00000000611)
Atherinomorphae	ANCESTRAL SPECIES	13	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Cyprinodontiformes	ANCESTRAL SPECIES	15	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.qb	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00390000004153.c	ENSGT00390000013474.a	ENSGT00730000111135
Aplocheiloidei	ANCESTRAL SPECIES	6	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000178366	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.qb	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00390000004153.c	ENSGT00390000013474.a	ENSGT00730000111135
Turquoise killifish	MODERN SPECIES	1623	RAP2A (ENSNFUG00015013191)	FARP1 (ENSNFUG00015013218)	DOCK9 (ENSNFUG00015013408)	SLC15A1 (ENSNFUG00015014013)	STK24 (ENSNFUG00015018815)	INO80D (ENSNFUG00015018830)	GPR1 (ENSNFUG00015018878)	ADAM23 (ENSNFUG00015018951)	FAM237A (ENSNFUG00015020730)	ENSNFUG00015020733	PRKRA (ENSNFUG00015020736) #15	OSBPL6 (ENSNFUG00015020780) #16	Nfu_g_1_017698 (ENSNFUG00015022429)	PDE11A (ENSNFUG00015022442)	AGPS (ENSNFUG00015022506) #21	NFE2L2A (ENSNFUG00015023300) #22	HNRNPA3 (ENSNFUG00015023301)	ENSNFUG00015023302	ENSNFUG00015023304	HOXD3A (ENSNFUG00015023307)	hoxd4a (ENSNFUG00015023309)	hoxd9a (ENSNFUG00015023312)	hoxd10a (ENSNFUG00015023313) #27	hoxd11a (ENSNFUG00015023314) #28	hoxd12a (ENSNFUG00015023315) #29	EVX2 (ENSNFUG00015023319) #31	LNPA (ENSNFUG00015023321) #32	ENSNFUG00015023348	ATP5G3A (ENSNFUG00015023349)	ATF2 (ENSNFUG00015023352) #35	ENSNFUG00015023356
Mangrove rivulus	MODERN SPECIES	66	ENSKMAG00000016675	DOCK9 (ENSKMAG00000016587)	SLC15A1 (ENSKMAG00000016526)	STK24 (ENSKMAG00000016478)	INO80D (ENSKMAG00000016425)	ENSKMAG00000016397	CMKLR2 (ENSKMAG00000016387)	ADAM23 (ENSKMAG00000016314)	FAM237A (ENSKMAG00000016284)	ENSKMAG00000016238	prkra (ENSKMAG00000016206) #15	OSBPL6 (ENSKMAG00000016168) #16	cycsb (ENSKMAG00000016145)	ENSKMAG00000016087	agps (ENSKMAG00000016024) #21	nfe2l2a (ENSKMAG00000015997) #22	hnrnpa3 (ENSKMAG00000015973)	hoxd4a (ENSKMAG00000015964)	hoxd3a (ENSKMAG00000015943)	hoxd9a (ENSKMAG00000015921)	hoxd10a (ENSKMAG00000015911) #27	hoxd11a (ENSKMAG00000015906) #28	hoxd12a (ENSKMAG00000015886) #29	lnpa (ENSKMAG00000015869) #32	ENSKMAG00000015845	ATF2 (ENSKMAG00000015781) #35	CHN1 (ENSKMAG00000015731) ##36	GPR155 (ENSKMAG00000015700)	scrn3 (ENSKMAG00000015666)	CIR1 (ENSKMAG00000015637)	sp9 (ENSKMAG00000015619)
Cyprinodontoidei	ANCESTRAL SPECIES	13	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.qb	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00390000004153.c	ENSGT00390000013474.a	ENSGT00730000111135
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000163756.c.b	ENSGT00390000016319	ENSGT00940000161100	ENSGT00390000001986	ENSGT00390000002748	ENSGT01020000230438.D.k	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.qb	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00390000004153.c	ENSGT00390000013474.a	ENSGT00730000111135
Poecilia	ANCESTRAL SPECIES	13	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.qb	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00390000004153.c	ENSGT00390000013474.a	ENSGT00730000111135
NAME_6	ANCESTRAL SPECIES	20	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.qb	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00390000004153.c	ENSGT00390000013474.a
Sailfin molly	MODERN SPECIES	651													cycsb (ENSPLAG00000008574)	ENSPLAG00000008647	agps (ENSPLAG00000008724) #21	nfe2l2a (ENSPLAG00000008747) #22	HNRNPA3 (ENSPLAG00000009033) #23	ENSPLAG00000009059
Amazon molly	MODERN SPECIES	268	DOCK9 (ENSPFOG00000015761)	SLC15A1 (ENSPFOG00000015566)	STK24 (ENSPFOG00000015467)	INO80D (ENSPFOG00000015413)	NDUFS1 (ENSPFOG00000015342)	CMKLR2 (ENSPFOG00000020155)	ADAM23 (ENSPFOG00000015086)	FAM237A (ENSPFOG00000022272)	ENSPFOG00000015032	prkra (ENSPFOG00000015000) #15	cycsb (ENSPFOG00000014353)	OSBPL6 (ENSPFOG00000014393) #16	cycsb (ENSPFOG00000014345)	ENSPFOG00000014118	agps (ENSPFOG00000014109) #21	nfe2l2a (ENSPFOG00000014090) #22	hnrnpa3 (ENSPFOG00000014049)	hoxd3a (ENSPFOG00000014020)	hoxd4a (ENSPFOG00000014015)	hoxd9a (ENSPFOG00000024320)	hoxd10a (ENSPFOG00000014005) #27	hoxd11a (ENSPFOG00000023998) #28	hoxd12a (ENSPFOG00000013995) #29	evx2 (ENSPFOG00000013984) #31	lnpa (ENSPFOG00000013929) #32	ENSPFOG00000013892	ATF2 (ENSPFOG00000013792) #35	CHN1 (ENSPFOG00000013757) ##36	GPR155 (ENSPFOG00000013585)	scrn3 (ENSPFOG00000013537)	CIR1 (ENSPFOG00000013476)
Guppy	MODERN SPECIES	450	DOCK9 (ENSPREG00000006433)	SLC15A1 (ENSPREG00000006053)	STK24 (ENSPREG00000005971)	INO80D (ENSPREG00000005945)	ENSPREG00000005932	NDUFS1 (ENSPREG00000005882)	CMKLR2 (ENSPREG00000005861)	ADAM23 (ENSPREG00000005795)	FAM237A (ENSPREG00000005758)	ENSPREG00000005704	prkra (ENSPREG00000005680) #15	OSBPL6 (ENSPREG00000005639) #16	cycsb (ENSPREG00000005539)	ENSPREG00000005502	agps (ENSPREG00000005459) #21	nfe2l2a (ENSPREG00000005434) #22	hnrnpa3 (ENSPREG00000005411)	hoxd3a (ENSPREG00000005385)	hoxd4a (ENSPREG00000005380)	hoxd9a (ENSPREG00000005374)	hoxd10a (ENSPREG00000005368) #27	hoxd11a (ENSPREG00000005358) #28	hoxd12a (ENSPREG00000005352) #29	evx2 (ENSPREG00000005343) #31	lnpa (ENSPREG00000005326) #32	ENSPREG00000005303	ATF2 (ENSPREG00000005281) #35	CHN1 (ENSPREG00000005267) ##36	GPR155 (ENSPREG00000005252)	scrn3 (ENSPREG00000005230)	CIR1 (ENSPREG00000005205)
Platyfish	MODERN SPECIES	21	FARP1 (ENSXMAG00000010868)	ENSXMAG00000025823	DOCK9 (ENSXMAG00000010643)	ENSXMAG00000029912	INO80D (ENSXMAG00000010606)	NDUFS1 (ENSXMAG00000010573)	CMKLR2 (ENSXMAG00000027922)	ADAM23 (ENSXMAG00000010539)	FAM237A (ENSXMAG00000010538)	ENSXMAG00000010522	prkra (ENSXMAG00000027764) #15	OSBPL6 (ENSXMAG00000010498) #16	cycsb (ENSXMAG00000010497)	ENSXMAG00000023835	agps (ENSXMAG00000000454) #21	nfe2l2a (ENSXMAG00000029295) #22	hnrnpa3 (ENSXMAG00000000439)	hoxd4a (ENSXMAG00000022728)	hoxd3a (ENSXMAG00000000435)	hoxd9a (ENSXMAG00000024351)	hoxd10a (ENSXMAG00000000431) #27	hoxd11a (ENSXMAG00000000427) #28	hoxd12a (ENSXMAG00000000425) #29	evx2 (ENSXMAG00000025829) #31	lnpa (ENSXMAG00000000413) #32	ENSXMAG00000000410	ATF2 (ENSXMAG00000000397) #35	CHN1 (ENSXMAG00000000389) ##36	GPR155 (ENSXMAG00000005409)	scrn3 (ENSXMAG00000005397)	CIR1 (ENSXMAG00000024439)
NAME_4	ANCESTRAL SPECIES	32	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f.qb	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00390000004153.c	ENSGT00390000013474.a
Mummichog	MODERN SPECIES	305	ENSFHEG00000006515	ENSFHEG00000006536	ENSFHEG00000006544	ENSFHEG00000006577	STK24 (ENSFHEG00000007014)	INO80D (ENSFHEG00000007036)	NDUFS1 (ENSFHEG00000007110)	CMKLR2 (ENSFHEG00000007123)	ADAM23 (ENSFHEG00000007189)	ENSFHEG00000007210	ENSFHEG00000007229 #15	OSBPL6 (ENSFHEG00000007291) #16	cycsb (ENSFHEG00000007308)	ENSFHEG00000007441	ENSFHEG00000007470 #21	nfe2l2a (ENSFHEG00000007475) #22	HNRNPA3 (ENSFHEG00000007482) #23	hoxd4a (ENSFHEG00000007487)	hoxd3a (ENSFHEG00000007502)	hoxd9a (ENSFHEG00000007511)	hoxd10a (ENSFHEG00000007516) #27	hoxd11a (ENSFHEG00000007522) #28	hoxd12a (ENSFHEG00000007527) #29	evx2 (ENSFHEG00000007544) #31
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	244																nfe2l2a (ENSCVAG00000019007) #22	hnrnpa3 (ENSCVAG00000018995)	hoxd3a (ENSCVAG00000018985)	hoxd4a (ENSCVAG00000018975)	hoxd9a (ENSCVAG00000018964)	hoxd10a (ENSCVAG00000018959) #27	hoxd11a (ENSCVAG00000018956) #28	hoxd12a (ENSCVAG00000000494) #29	evx2 (ENSCVAG00000018947) #31	lnpa (ENSCVAG00000018936) #32	ENSCVAG00000018929	ATF2 (ENSCVAG00000018917) #35	ENSCVAG00000018858 ##36	GPR155 (ENSCVAG00000018822)	scrn3 (ENSCVAG00000000491)	CIR1 (ENSCVAG00000018732)
Sheepshead minnow	MODERN SPECIES	158	ENSCVAG00000002377	DOCK9 (ENSCVAG00000002415)	SLC15A1 (ENSCVAG00000000079)	STK24 (ENSCVAG00000002660)	INO80D (ENSCVAG00000002679)	NDUFS1 (ENSCVAG00000002713)	CMKLR2 (ENSCVAG00000002719)	ADAM23 (ENSCVAG00000002736)	FAM237A (ENSCVAG00000002738)	ENSCVAG00000000083	prkra (ENSCVAG00000002749) #15	OSBPL6 (ENSCVAG00000002772) #16	cycsb (ENSCVAG00000002778)	ENSCVAG00000002791	agps (ENSCVAG00000002813) #21	nfe2l2a (ENSCVAG00000002823) #22
Oryzias	ANCESTRAL SPECIES	10	ENSGT00940000155318.b.a.b	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Oryzias_b	ANCESTRAL SPECIES	10	ENSGT00940000155318.b.a.b	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Javanese ricefish	MODERN SPECIES	13	HS6ST3 (ENSOJAG00000016571)	MBNL2 (ENSOJAG00000016580)	RAP2A (ENSOJAG00000016606)	FARP1 (ENSOJAG00000016839)	STK24 (ENSOJAG00000022686)	INO80D (ENSOJAG00000022689)	NDUFS1 (ENSOJAG00000022690)	CMKLR2 (ENSOJAG00000022704)	ADAM23 (ENSOJAG00000022788)	ENSOJAG00000023004	prkra (ENSOJAG00000023006) #15	OSBPL6 (ENSOJAG00000023200) #16	cycsb (ENSOJAG00000023613)	ENSOJAG00000023620	agps (ENSOJAG00000023690) #21	nfe2l2a (ENSOJAG00000023772) #22	hnrnpa3 (ENSOJAG00000023773)	hoxd3a (ENSOJAG00000023775)	hoxd4a (ENSOJAG00000023776)	hoxd9a (ENSOJAG00000023777)	hoxd10a (ENSOJAG00000023778) #27	hoxd11a (ENSOJAG00000023779) #28	hoxd12a (ENSOJAG00000023780) #29	evx2 (ENSOJAG00000023781) #31	lnpa (ENSOJAG00000023782) #32	ENSOJAG00000023788	ATF2 (ENSOJAG00000023791) #35	ENSOJAG00000023792 ##36	CHRNA1 (ENSOJAG00000023796)	ENSOJAG00000023799	GPR155 (ENSOJAG00000023801)
Indian medaka	MODERN SPECIES	18	ENSOMEG00000005665	ENSOMEG00000005590	SLC15A1 (ENSOMEG00000005543)	STK24 (ENSOMEG00000005455)	INO80D (ENSOMEG00000005422)	NDUFS1 (ENSOMEG00000005408)	ENSOMEG00000005396	CMKLR2 (ENSOMEG00000005381)	ADAM23 (ENSOMEG00000005340)	FAM237A (ENSOMEG00000005173)	prkra (ENSOMEG00000005162) #15	OSBPL6 (ENSOMEG00000005131) #16	cycsb (ENSOMEG00000005020)	ENSOMEG00000004995	agps (ENSOMEG00000004912) #21	nfe2l2a (ENSOMEG00000004847) #22	hnrnpa3 (ENSOMEG00000004838)	hoxd3a (ENSOMEG00000004819)	hoxd4a (ENSOMEG00000004802)	hoxd9a (ENSOMEG00000004787)	hoxd10a (ENSOMEG00000004774) #27	hoxd11a (ENSOMEG00000004768) #28	hoxd12a (ENSOMEG00000004758) #29	evx2 (ENSOMEG00000004750) #31	lnpa (ENSOMEG00000004732) #32	ENSOMEG00000004706	ATF2 (ENSOMEG00000004661) #35	ENSOMEG00000000749 ##36	CHRNA1 (ENSOMEG00000004572)	GPR155 (ENSOMEG00000004547)	scrn3 (ENSOMEG00000004529)
Oryzias_a	ANCESTRAL SPECIES	21	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.n.c	ENSGT00940000178366	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000157618 #15	ENSGT00940000156791.g #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Japanese Medaka HdrR	MODERN SPECIES	13	ENSORLG00000017640	ENSORLG00000022562	STK24 (ENSORLG00000017632)	INO80D (ENSORLG00000017623)	ENSORLG00000030457	ENSORLG00000027518	CMKLR2 (ENSORLG00000017619)	ADAM23 (ENSORLG00000017616)	FAM237A (ENSORLG00000023264)	prkra (ENSORLG00000017598) #15	ENSORLG00000017596	OSBPL6 (ENSORLG00000017589) #16	cycsb (ENSORLG00000027899)	ENSORLG00000024999	agps (ENSORLG00000017577) #21	nfe2l2a (ENSORLG00000017568) #22	hnrnpa3 (ENSORLG00000017561)	hoxd3a (ENSORLG00000017546)	hoxd4a (ENSORLG00000017548)	hoxd9a (ENSORLG00000017540) #27	hoxd11a (ENSORLG00000017538) #28	hoxd12a (ENSORLG00000017536) #29	evx2 (ENSORLG00000017534) #31	lnpa (ENSORLG00000017531) #32	ENSORLG00000029959	ENSORLG00000022474	ATF2 (ENSORLG00000017522) #35	CHN1 (ENSORLG00000017518) ##36	CHRNA1 (ENSORLG00000017512)	GPR155 (ENSORLG00000017509)	scrn3 (ENSORLG00000017501)
Chinese medaka	MODERN SPECIES	394	dnajc3a (ENSOSIG00000012876)	UGGT2 (ENSOSIG00000006510)	HS6ST3 (ENSOSIG00000006470)	MBNL2 (ENSOSIG00000006463)	RAP2A (ENSOSIG00000006460)	FARP1 (ENSOSIG00000005988)	SLC15A1 (ENSOSIG00000000908)	ENSOSIG00000000798	INO80D (ENSOSIG00000000785)	ENSOSIG00000000781	ENSOSIG00000000778	OSBPL6 (ENSOSIG00000000768) #16	cycsb (ENSOSIG00000000762)	ENSOSIG00000000629	agps (ENSOSIG00000000574) #21	nfe2l2a (ENSOSIG00000000556) #22	hnrnpa3 (ENSOSIG00000000549)	hoxd3a (ENSOSIG00000000546)	hoxd4a (ENSOSIG00000000543)	hoxd9a (ENSOSIG00000000542)	hoxd10a (ENSOSIG00000000541) #27	hoxd11a (ENSOSIG00000000539) #28	hoxd12a (ENSOSIG00000000537) #29	evx2 (ENSOSIG00000000535) #31	lnpa (ENSOSIG00000000282) #32	ENSOSIG00000000219	ATF2 (ENSOSIG00000000188) #35	CHN1 (ENSOSIG00000023518) ##36	CHRNA1 (ENSOSIG00000023517)	GPR155 (ENSOSIG00000023514)	scrn3 (ENSOSIG00000023512)
Percomorphaceae_C	ANCESTRAL SPECIES	13	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Percomorphaceae_D	ANCESTRAL SPECIES	12	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00940000160594.g.a	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Anabantoidei	ANCESTRAL SPECIES	13	ENSGT00940000160594.g.a	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Climbing perch	MODERN SPECIES	12	RAP2A (ENSATEG00000014298)	FARP1 (ENSATEG00000014315)	DOCK9 (ENSATEG00000014377)	ENSATEG00000014517	STK24 (ENSATEG00000014774)	INO80D (ENSATEG00000014792)	NDUFS1 (ENSATEG00000014830)	CMKLR2 (ENSATEG00000014960)	ADAM23 (ENSATEG00000014971)	FAM237A (ENSATEG00000015000)	ENSATEG00000015020	prkra (ENSATEG00000015036) #15	ENSATEG00000015064 #16	ENSATEG00000015193	agps (ENSATEG00000015253) #21	nfe2l2a (ENSATEG00000015291) #22	hnrnpa3 (ENSATEG00000015304)	hoxd3a (ENSATEG00000015328)	hoxd4a (ENSATEG00000026293)	hoxd9a (ENSATEG00000015352)	hoxd10a (ENSATEG00000015361) #27	hoxd11a (ENSATEG00000015366) #28	hoxd12a (ENSATEG00000015376) #29	evx2 (ENSATEG00000015390) #31	lnpa (ENSATEG00000015400) #32	ENSATEG00000029057	ATF2 (ENSATEG00000015430) #35	ENSATEG00000026639 ##36	CHRNA1 (ENSATEG00000015509)	GPR155 (ENSATEG00000015655)	scrn3 (ENSATEG00000015681)
Siamese fighting fish	MODERN SPECIES	11	RAP2A (ENSBSLG00000024472)	FARP1 (ENSBSLG00000024508)	DOCK9 (ENSBSLG00000024853)	ENSBSLG00000025293	SLC15A1 (ENSBSLG00000025555)	STK24 (ENSBSLG00000025966)	INO80D (ENSBSLG00000025979)	CMKLR2 (ENSBSLG00000025999)	ADAM23 (ENSBSLG00000026024)	FAM237A (ENSBSLG00000026070)	ENSBSLG00000026074	prkra (ENSBSLG00000026075) #15	OSBPL6 (ENSBSLG00000026120) #16	ENSBSLG00000026217	agps (ENSBSLG00000026249) #21	nfe2l2a (ENSBSLG00000026266) #22	hnrnpa1b (ENSBSLG00000026269)	hoxd3a (ENSBSLG00000026271)	hoxd4a (ENSBSLG00000026272)	hoxd9a (ENSBSLG00000026273)	hoxd10a (ENSBSLG00000026275) #27	hoxd11a (ENSBSLG00000026276) #28	hoxd12a (ENSBSLG00000026277) #29	evx2 (ENSBSLG00000026279) #31	lnpa (ENSBSLG00000004925) #32	ENSBSLG00000004975	ATF2 (ENSBSLG00000005177) #35	ENSBSLG00000005277 ##36	GPR155 (ENSBSLG00000005380)	scrn3 (ENSBSLG00000005638)	CIR1 (ENSBSLG00000005674)
Zig-zag eel	MODERN SPECIES	13	RAP2A (ENSMAMG00000012424)	FARP1 (ENSMAMG00000012245)	DOCK9 (ENSMAMG00000012139)	ENSMAMG00000006800	STK24 (ENSMAMG00000006753)	INO80D (ENSMAMG00000006745)	NDUFS1 (ENSMAMG00000006691)	CMKLR2 (ENSMAMG00000006676)	ADAM23 (ENSMAMG00000006637)	FAM237A (ENSMAMG00000006615)	ENSMAMG00000006604	prkra (ENSMAMG00000006591) #15	ENSMAMG00000006471 #16	ENSMAMG00000006431	agps (ENSMAMG00000006371) #21	nfe2l2a (ENSMAMG00000025109) #22	hnrnpa3 (ENSMAMG00000006307)	hoxd4a (ENSMAMG00000006292)	hoxd3a (ENSMAMG00000006302)	hoxd9a (ENSMAMG00000006260)	hoxd10a (ENSMAMG00000006254) #27	hoxd11a (ENSMAMG00000028586) #28	hoxd12a (ENSMAMG00000006228) #29	evx2 (ENSMAMG00000006208) #31	lnpa (ENSMAMG00000006198) #32	ENSMAMG00000006164	ATF2 (ENSMAMG00000006094) #35	CHN1 (ENSMAMG00000006062) ##36	CHRNA1 (ENSMAMG00000006042)	GPR155 (ENSMAMG00000006021)	scrn3 (ENSMAMG00000006006)
Carangaria	ANCESTRAL SPECIES	12	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c
Carangaria_A	ANCESTRAL SPECIES	11	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c
Seriola	ANCESTRAL SPECIES	6	ENSGT00940000176946.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c
Greater amberjack	MODERN SPECIES	21	ENSSDUG00000002054	DOCK9 (ENSSDUG00000001909)	SLC15A1 (ENSSDUG00000001105)	STK24 (ENSSDUG00000000992)	INO80D (ENSSDUG00000000981)	NDUFS1 (ENSSDUG00000000927)	CMKLR2 (ENSSDUG00000000920)	ADAM23 (ENSSDUG00000000744)	FAM237A (ENSSDUG00000000722)	ENSSDUG00000000666	prkra (ENSSDUG00000000636) #15	OSBPL6 (ENSSDUG00000000600) #16	cycsb (ENSSDUG00000000582)	ENSSDUG00000000510	agps (ENSSDUG00000000434) #21	nfe2l2a (ENSSDUG00000000407) #22	hnrnpa3 (ENSSDUG00000000381)	hoxd3a (ENSSDUG00000000363)	hoxd4a (ENSSDUG00000000306)	hoxd9a (ENSSDUG00000000299)	hoxd10a (ENSSDUG00000000236) #27	hoxd11a (ENSSDUG00000000198) #28	evx2 (ENSSDUG00000000177) #31	hoxd12a (ENSSDUG00000000155) #29	lnpa (ENSSDUG00000000147) #32	ENSSDUG00000000095	ATF2 (ENSSDUG00000021617) #35	ENSSDUG00000021597 ##36	CHRNA1 (ENSSDUG00000021553)	GPR155 (ENSSDUG00000021535)	scrn3 (ENSSDUG00000021519)
Yellowtail amberjack	MODERN SPECIES	2712															agps (ENSSLDG00000019037) #21	nfe2l2a (ENSSLDG00000019015) #22	HNRNPA3 (ENSSLDG00000018999) #23	hoxd4a (ENSSLDG00000018988)	hoxd3a (ENSSLDG00000018953)	hoxd9a (ENSSLDG00000018936)	hoxd10a (ENSSLDG00000018926) #27	hoxd11a (ENSSLDG00000018913) #28	hoxd12a (ENSSLDG00000018902) #29	evx2 (ENSSLDG00000018892) #31	lnpa (ENSSLDG00000018850) #32	ENSSLDG00000018828	ATF2 (ENSSLDG00000018768) #35	ENSSLDG00000018722 ##36	CHRNA1 (ENSSLDG00000018697)	GPR155 (ENSSLDG00000018668)	scrn3 (ENSSLDG00000018646)
Barramundi perch	MODERN SPECIES	64										PCDH1 (ENSLCAG00010017223)	prkra (ENSLCAG00010017218) #15	OSBPL6 (ENSLCAG00010016912) #16	cycsb (ENSLCAG00010016816)	ENSLCAG00010016753	agps (ENSLCAG00010016351) #21	nfe2l2a (ENSLCAG00010016249) #22	HNRNPA3 (ENSLCAG00010016245) #23	hoxd3a (ENSLCAG00010016238)	hoxd4a (ENSLCAG00010016232)	hoxd9a (ENSLCAG00010016229)	hoxd10a (ENSLCAG00010016226) #27	hoxd11a (ENSLCAG00010016223) #28	hoxd12a (ENSLCAG00010016220) #29	evx2 (ENSLCAG00010016217) #31	lnpa (ENSLCAG00010016215) #32	ENSLCAG00010016190	ATF2 (ENSLCAG00010016171) #35	ENSLCAG00010016163 ##36	CHRNA1 (ENSLCAG00010016148)	GPR155 (ENSLCAG00010016029)	scrn3 (ENSLCAG00010015988)
Pleuronectoidei	ANCESTRAL SPECIES	9	ENSGT00940000176946.a	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c
Tongue sole	MODERN SPECIES	7	FAM124A (ENSCSEG00000005828)	tsn (ENSCSEG00000005825)	si:dkey-91i10.2 (ENSCSEG00000005820)	eaf2 (ENSCSEG00000005817)	ENSCSEG00000005809	slc15a2 (ENSCSEG00000005799)	hspbap1 (ENSCSEG00000005786)	slc49a4 (ENSCSEG00000005772)	SEMA5B (ENSCSEG00000005720)	pdia5 (ENSCSEG00000005697)	sec22a (ENSCSEG00000005690)	adcy5 (ENSCSEG00000005675)	dnajc15 (ENSCSEG00000005668)	sestd1 (ENSCSEG00000005650)	agps (ENSCSEG00000005635) #21	nfe2l2a (ENSCSEG00000005621) #22	HNRNPA3 (ENSCSEG00000005613) #23	hoxd4a (ENSCSEG00000005611)	hoxd3a (ENSCSEG00000005607)	hoxd9a (ENSCSEG00000005605)	hoxd10a (ENSCSEG00000005599) #27	hoxd11a (ENSCSEG00000005596) #28	hoxd12a (ENSCSEG00000005593) #29	evx2 (ENSCSEG00000005590) #31	lnpa (ENSCSEG00000005584) #32	ENSCSEG00000005581	ATF2 (ENSCSEG00000005568) #35	ENSCSEG00000005562 ##36	CHRNA1 (ENSCSEG00000005556)	GPR155 (ENSCSEG00000005546)	scrn3 (ENSCSEG00000005538)
Turbot	MODERN SPECIES	5	ENSSMAG00000016062	DOCK9 (ENSSMAG00000015986)	ENSSMAG00000015951	STK24 (ENSSMAG00000015903)	INO80D (ENSSMAG00000015863)	NDUFS1 (ENSSMAG00000015811)	CMKLR2 (ENSSMAG00000015806)	ADAM23 (ENSSMAG00000015705)	FAM237A (ENSSMAG00000015688)	ENSSMAG00000015624	prkra (ENSSMAG00000015615) #15	ENSSMAG00000015499 #16	ENSSMAG00000032684	ENSSMAG00000015360	agps (ENSSMAG00000015285) #21	nfe2l2a (ENSSMAG00000015270) #22	hnrnpa3 (ENSSMAG00000015218)	hoxd3a (ENSSMAG00000015192)	hoxd4a (ENSSMAG00000015208)	hoxd9a (ENSSMAG00000015178)	hoxd10a (ENSSMAG00000015175) #27	hoxd11a (ENSSMAG00000015168) #28	hoxd12a (ENSSMAG00000015157) #29	evx2 (ENSSMAG00000022153) #31	lnpa (ENSSMAG00000015112) #32	ENSSMAG00000015084	ATF2 (ENSSMAG00000015045) #35	ENSSMAG00000015017 ##36	CHRNA1 (ENSSMAG00000014996)	GPR155 (ENSSMAG00000014982)	scrn3 (ENSSMAG00000014971)
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Tetraodon	MODERN SPECIES	13	RAP2A (ENSTNIG00000013978)	ENSTNIG00000013979	FARP1 (ENSTNIG00000013980)	DOCK9 (ENSTNIG00000013981)	SLC15A1 (ENSTNIG00000013982)	STK24 (ENSTNIG00000013983)	INO80D (ENSTNIG00000013984)	NDUFS1 (ENSTNIG00000006545)	ADAM23 (ENSTNIG00000003428)	ENSTNIG00000016964	prkra (ENSTNIG00000016963) #15	OSBPL6 (ENSTNIG00000016962) #16	cycsb (ENSTNIG00000000282)	ENSTNIG00000016961	agps (ENSTNIG00000016960) #21	nfe2l2a (ENSTNIG00000016959) #22	hnrnpa3 (ENSTNIG00000016958)	hoxd3a (ENSTNIG00000001764)	hoxd4a (ENSTNIG00000001765)	hoxd9a (ENSTNIG00000016957)	hoxd10a (ENSTNIG00000001775) #27	hoxd11a (ENSTNIG00000001776) #28	hoxd12a (ENSTNIG00000001777) #29	evx2 (ENSTNIG00000001817) #31	lnpa (ENSTNIG00000016956) #32	ENSTNIG00000000679	ENSTNIG00000016955	ATF2 (ENSTNIG00000016954) #35	ENSTNIG00000016953 ##36	CHRNA1 (ENSTNIG00000016952)	GPR155 (ENSTNIG00000016951)
Fugu	MODERN SPECIES		RAP2A (ENSTRUG00000026484)	FARP1 (ENSTRUG00000017356)	DOCK9 (ENSTRUG00000017366)	ENSTRUG00000017397	INO80D (ENSTRUG00000017409)	NDUFS1 (ENSTRUG00000017410)	CMKLR2 (ENSTRUG00000017415)	ADAM23 (ENSTRUG00000017416)	FAM237A (ENSTRUG00000017425)	ENSTRUG00000017426	prkra (ENSTRUG00000021336) #15	OSBPL6 (ENSTRUG00000017442) #16	cyc-B (ENSTRUG00000032049)	ENSTRUG00000017461	agps (ENSTRUG00000017479) #21	nfe2l2a (ENSTRUG00000017486) #22	ENSTRUG00000033446	hnrnpa3 (ENSTRUG00000017504)	hoxd3a (ENSTRUG00000017520)	hoxd4a (ENSTRUG00000024818)	hoxd9a (ENSTRUG00000017521)	hoxd10a (ENSTRUG00000025243) #27	hoxd11a (ENSTRUG00000017526) #28	hoxd12a (ENSTRUG00000017534) #29	evx2 (ENSTRUG00000017536) #31	lnpa (ENSTRUG00000017540) #32	ENSTRUG00000023868	ATF2 (ENSTRUG00000017553) #35	CHN1 (ENSTRUG00000017564) ##36	CHRNA1 (ENSTRUG00000017568)	GPR155 (ENSTRUG00000017582)
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Ballan wrasse	MODERN SPECIES	68	FARP1 (ENSLBEG00000018535)	DOCK9 (ENSLBEG00000018292)	SLC15A1 (ENSLBEG00000017752)	STK24 (ENSLBEG00000017536)	INO80D (ENSLBEG00000017499)	NDUFS1 (ENSLBEG00000017451)	CMKLR2 (ENSLBEG00000017433)	ADAM23 (ENSLBEG00000017288)	FAM237A (ENSLBEG00000017258)	ENSLBEG00000017240	prkra (ENSLBEG00000017208) #15	OSBPL6 (ENSLBEG00000017090) #16	cycsb (ENSLBEG00000017009)	ENSLBEG00000016933	agps (ENSLBEG00000016832) #21	nfe2l2a (ENSLBEG00000016797) #22	hnrnpa3 (ENSLBEG00000016767)	hoxd3a (ENSLBEG00000016756)	hoxd4a (ENSLBEG00000016739)	hoxd9a (ENSLBEG00000016730)	hoxd10a (ENSLBEG00000016718) #27	hoxd11a (ENSLBEG00000016704) #28	hoxd12a (ENSLBEG00000016682) #29	evx2 (ENSLBEG00000016664) #31	lnpa (ENSLBEG00000016632) #32	ENSLBEG00000016610	ATF2 (ENSLBEG00000016549) #35	CHN1 (ENSLBEG00000016496) ##36	CHRNA1 (ENSLBEG00000016355)	GPR155 (ENSLBEG00000016274)	scrn3 (ENSLBEG00000016240)
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Perciformes	ANCESTRAL SPECIES	20	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Cottioidei	ANCESTRAL SPECIES	14	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Lumpfish	MODERN SPECIES	13	FARP1 (ENSCLMG00005009389)	DOCK9 (ENSCLMG00005010444)	SLC15A1 (ENSCLMG00005018954)	STK24 (ENSCLMG00005018957)	INO80D (ENSCLMG00005019041)	NDUFS1 (ENSCLMG00005019057)	CMKLR2 (ENSCLMG00005019624)	ADAM23 (ENSCLMG00005019627)	FAM237A (ENSCLMG00005020300)	ENSCLMG00005020302	prkra (ENSCLMG00005020304) #15	OSBPL6 (ENSCLMG00005020316) #16	ENSCLMG00005021004	ENSCLMG00005021005	agps (ENSCLMG00005021014) #21	nfe2l2a (ENSCLMG00005021034) #22	hnrnpa3 (ENSCLMG00005021035)	hoxd3a (ENSCLMG00005021036)	hoxd4a (ENSCLMG00005021037)	hoxd9a (ENSCLMG00005021038)	hoxd10a (ENSCLMG00005021039) #27	hoxd11a (ENSCLMG00005021040) #28	hoxd12a (ENSCLMG00005021041) #29	evx2 (ENSCLMG00005021042) #31	lnpa (ENSCLMG00005021044) #32	ENSCLMG00005021047	ATF2 (ENSCLMG00005021049) #35	ENSCLMG00005021050 ##36	CHRNA1 (ENSCLMG00005021051)	GPR155 (ENSCLMG00005021053)	scrn3 (ENSCLMG00005021066)
Stickleback	MODERN SPECIES	16	HS6ST3 (ENSGACG00000004221)	MBNL2 (ENSGACG00000004222)	FARP1 (ENSGACG00000004228)	DOCK9 (ENSGACG00000004237)	SLC15A1 (ENSGACG00000004265)	STK24 (ENSGACG00000004299)	INO80D (ENSGACG00000004314)	NDUFS1 (ENSGACG00000004321)	CMKLR2 (ENSGACG00000004337)	ADAM23 (ENSGACG00000004341)	casp10 (ENSGACG00000004378)	prkra (ENSGACG00000004394) #15	OSBPL6 (ENSGACG00000004410) #16	ENSGACG00000004421	agps (ENSGACG00000004444) #21	nfe2l2a (ENSGACG00000004470) #22	hnrnpa3 (ENSGACG00000004477)	hoxd3a (ENSGACG00000004548)	hoxd4a (ENSGACG00000004551)	hoxd9a (ENSGACG00000004556)	hoxd10a (ENSGACG00000004564) #27	hoxd11a (ENSGACG00000004569) #28	hoxd12a (ENSGACG00000004574) #29	evx2 (ENSGACG00000004579) #31	lnpa (ENSGACG00000004584) #32	ENSGACG00000004591	ATF2 (ENSGACG00000004600) #35	CHN1 (ENSGACG00000004616) ##36	CHRNA1 (ENSGACG00000004638)	GPR155 (ENSGACG00000004687)	scrn3 (ENSGACG00000004721)
Perciformes_a	ANCESTRAL SPECIES	21	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Channel bull blenny	MODERN SPECIES	13	FARP1 (ENSCGOG00000003665)	DOCK9 (ENSCGOG00000004936)	SLC15A1 (ENSCGOG00000005836)	STK24 (ENSCGOG00000005844)	INO80D (ENSCGOG00000005996)	NDUFS1 (ENSCGOG00000006001)	CMKLR2 (ENSCGOG00000006380)	ADAM23 (ENSCGOG00000006399)	FAM237A (ENSCGOG00000007653)	ENSCGOG00000007655	prkra (ENSCGOG00000007659) #15	OSBPL6 (ENSCGOG00000007738) #16	cycsb (ENSCGOG00000010607)	ENSCGOG00000010619	agps (ENSCGOG00000010712) #21	nfe2l2a (ENSCGOG00000012505) #22	hnrnpa3 (ENSCGOG00000012510)	hoxd3a (ENSCGOG00000012512)	hoxd4a (ENSCGOG00000012513)	hoxd9a (ENSCGOG00000012514)	hoxd10a (ENSCGOG00000012515) #27	hoxd11a (ENSCGOG00000012516) #28	hoxd12a (ENSCGOG00000012519) #29	evx2 (ENSCGOG00000012521) #31	lnpa (ENSCGOG00000012525) #32	ENSCGOG00000012529	ATF2 (ENSCGOG00000012558) #35	CHN1 (ENSCGOG00000012562) ##36	CHRNA1 (ENSCGOG00000012576)	GPR155 (ENSCGOG00000012639)	scrn3 (ENSCGOG00000012751)
Pike perch	MODERN SPECIES	1	FARP1 (ENSSLUG00000001193)	DOCK9 (ENSSLUG00000002213)	SLC15A1 (ENSSLUG00000007711)	STK24 (ENSSLUG00000007748)	INO80D (ENSSLUG00000007824)	NDUFS1 (ENSSLUG00000007838)	CMKLR2 (ENSSLUG00000007906)	ADAM23 (ENSSLUG00000007933)	FAM237A (ENSSLUG00000008599)	ENSSLUG00000008612	prkra (ENSSLUG00000008658) #15	OSBPL6 (ENSSLUG00000008720) #16	cycsb (ENSSLUG00000010048)	ENSSLUG00000010056	agps (ENSSLUG00000010199) #21	nfe2l2a (ENSSLUG00000013061) #22	HNRNPA1L3 (ENSSLUG00000013067)	hoxd3a (ENSSLUG00000013082)	hoxd4a (ENSSLUG00000013085)	hoxd9a (ENSSLUG00000013092)	hoxd10a (ENSSLUG00000013095) #27	hoxd11a (ENSSLUG00000013098) #28	hoxd12a (ENSSLUG00000013103) #29	evx2 (ENSSLUG00000013108) #31	lnpa (ENSSLUG00000013118) #32	atp5mc3a (ENSSLUG00000013135) ##34	ATF2 (ENSSLUG00000013155) #35	CHN1 (ENSSLUG00000013159) ##36	CHRNA1 (ENSSLUG00000013170)	GPR155 (ENSSLUG00000013387)	scrn3 (ENSSLUG00000013574)
Eupecaria_C	ANCESTRAL SPECIES	21	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18	ENSGT00940000155318.b.a.b	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00940000157883.a.b.f	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.b.b ##36	ENSGT00940000156851.c	ENSGT00390000004153.c	ENSGT00390000013474.a
European seabass	MODERN SPECIES	5	MBNL2 (ENSDLAG00005024282)	RAP2A (ENSDLAG00005026902)	FARP1 (ENSDLAG00005023084)	DOCK9 (ENSDLAG00005012371)	ENSDLAG00005010823	STK24 (ENSDLAG00005010485)	INO80D (ENSDLAG00005030557)	NDUFS1 (ENSDLAG00005009594)	ADAM23 (ENSDLAG00005008967)	FAM237A (ENSDLAG00005008945)	ENSDLAG00005008935	ENSDLAG00005006538 #16	ENSDLAG00005029869	ENSDLAG00005006250	agps (ENSDLAG00005004780) #21	nfe2l2a (ENSDLAG00005004683) #22	hnrnpa3 (ENSDLAG00005004602)	hoxd3a (ENSDLAG00005004581)	hoxd4a (ENSDLAG00005031082)	hoxd9a (ENSDLAG00005034881)	hoxd10a (ENSDLAG00005004554) #27	hoxd11a (ENSDLAG00005004534) #28	hoxd12a (ENSDLAG00005004530) #29	evx2 (ENSDLAG00005004514) #31	lnpa (ENSDLAG00005004438) #32	ENSDLAG00005029965	ATF2 (ENSDLAG00005026266) #35	ENSDLAG00005026265 ##36	CHRNA1 (ENSDLAG00005026264)	GPR155 (ENSDLAG00005026260)	scrn3 (ENSDLAG00005026258)
Large yellow croaker	MODERN SPECIES	490	FARP1 (ENSLCRG00005023407)	DOCK9 (ENSLCRG00005022345)	SLC15A1 (ENSLCRG00005021809)	STK24 (ENSLCRG00005021776)	INO80D (ENSLCRG00005021775)	NDUFS1 (ENSLCRG00005021709)	CMKLR2 (ENSLCRG00005021704)	ADAM23 (ENSLCRG00005021108)	FAM237A (ENSLCRG00005021096)	ENSLCRG00005021093	prkra (ENSLCRG00005021092) #15	OSBPL6 (ENSLCRG00005020383) #16	cycsb (ENSLCRG00005020377)	ENSLCRG00005020375	agps (ENSLCRG00005019201) #21	nfe2l2a (ENSLCRG00005019184) #22	hnrnpa3 (ENSLCRG00005019181)	hoxd4a (ENSLCRG00005019180)	hoxd9a (ENSLCRG00005019178)	hoxd10a (ENSLCRG00005019177) #27	hoxd11a (ENSLCRG00005019175) #28	evx2 (ENSLCRG00005019172) #31	hoxd3a (ENSLCRG00005019169)	hoxd12a (ENSLCRG00005019167) #29	lnpa (ENSLCRG00005019163) #32	ENSLCRG00005019153	ATF2 (ENSLCRG00005019149) #35	ENSLCRG00005019146 ##36	CHRNA1 (ENSLCRG00005018845)	GPR155 (ENSLCRG00005018468)	ENSLCRG00005018462
Gilthead seabream	MODERN SPECIES	23	FARP1 (ENSSAUG00010013566)	DOCK9 (ENSSAUG00010013677)	SLC15A1 (ENSSAUG00010014675)	STK24 (ENSSAUG00010021366)	INO80D (ENSSAUG00010021382)	NDUFS1 (ENSSAUG00010021399)	CMKLR2 (ENSSAUG00010021592)	ADAM23 (ENSSAUG00010021625)	FAM237A (ENSSAUG00010023171)	ENSSAUG00010023173	prkra (ENSSAUG00010023174) #15	OSBPL6 (ENSSAUG00010023195) #16	CYCS (ENSSAUG00010024700)	ENSSAUG00010024705	agps (ENSSAUG00010024711) #21	nfe2l2a (ENSSAUG00010024752) #22	hnrnpa3 (ENSSAUG00010024754)	hoxd3a (ENSSAUG00010024756)	hoxd4a (ENSSAUG00010024757)	hoxd9a (ENSSAUG00010024758)	hoxd10a (ENSSAUG00010024759) #27	hoxd11a (ENSSAUG00010024760) #28	hoxd12a (ENSSAUG00010024761) #29	evx2 (ENSSAUG00010024762) #31	lnpa (ENSSAUG00010024764) #32	ATP5G1 (ENSSAUG00010024766)	ATF2 (ENSSAUG00010024770) #35	ENSSAUG00010024771 ##36	CHRNA1 (ENSSAUG00010024777)	GPR155 (ENSSAUG00010024911)	scrn3 (ENSSAUG00010025027)
Tiger tail seahorse	MODERN SPECIES	495															agps (ENSHCOG00000000795) #21	nfe2l2a (ENSHCOG00000009951) #22	HNRNPA3 (ENSHCOG00000000313) #23	hoxd3a (ENSHCOG00000009973)	hoxd4a (ENSHCOG00000009984)	hoxd9a (ENSHCOG00000009986)	hoxd10a (ENSHCOG00000009994) #27	hoxd11a (ENSHCOG00000009999) #28	hoxd12a (ENSHCOG00000010003) #29	evx2 (ENSHCOG00000010011) #31	lnpa (ENSHCOG00000010016) #32	ENSHCOG00000010035	ATF2 (ENSHCOG00000010063) #35	CHN1 (ENSHCOG00000010081) ##36	CHRNA1 (ENSHCOG00000010102)	GPR155 (ENSHCOG00000010153)	scrn3 (ENSHCOG00000010226)
Pinecone sodierfish	MODERN SPECIES	13	FARP1 (ENSMMDG00005022636)	DOCK9 (ENSMMDG00005022137)	SLC15A1 (ENSMMDG00005021631)	STK24 (ENSMMDG00005021531)	INO80D (ENSMMDG00005021523)	NDUFS1 (ENSMMDG00005021178)	CMKLR2 (ENSMMDG00005021165)	ADAM23 (ENSMMDG00005021151)	FAM237A (ENSMMDG00005021148)	ENSMMDG00005021141	prkra (ENSMMDG00005021138) #15	OSBPL6 (ENSMMDG00005021137) #16	cycsb (ENSMMDG00005021133)	ENSMMDG00005021126	agps (ENSMMDG00005018127) #21	nfe2l2a (ENSMMDG00005018097) #22	hnrnpa3 (ENSMMDG00005018093)	hoxd3a (ENSMMDG00005018092)	hoxd4a (ENSMMDG00005018091)	hoxd9a (ENSMMDG00005018089)	hoxd10a (ENSMMDG00005018088) #27	hoxd11a (ENSMMDG00005018087) #28	hoxd12a (ENSMMDG00005018086) #29	evx2 (ENSMMDG00005018084) #31	lnpa (ENSMMDG00005018082) #32	ENSMMDG00005018076	ATF2 (ENSMMDG00005018070) #35	ENSMMDG00005018052 ##36	CHRNA1 (ENSMMDG00005018050)	GPR155 (ENSMMDG00005018047)	scrn3 (ENSMMDG00005018044)
Cod	MODERN SPECIES	12	casq2 (ENSGMOG00000011071)	ENSGMOG00000020229	ENSGMOG00000011067	ENSGMOG00000010998	ENSGMOG00000032270	ENSGMOG00000035579	ENSGMOG00000004002	ENSGMOG00000007814	ENSGMOG00000025425	prkra (ENSGMOG00000023426) #15	ENSGMOG00000004037 #16	ENSGMOG00000025591	ENSGMOG00000004113	agps (ENSGMOG00000004161) #21	ENSGMOG00000030426	nfe2l2a (ENSGMOG00000004196) #22	HNRNPA3 (ENSGMOG00000004230) #23	hoxd3a (ENSGMOG00000037192)	hoxd4a (ENSGMOG00000023531)	hoxd9a (ENSGMOG00000024253)	hoxd10a (ENSGMOG00000028708) #27	hoxd11a (ENSGMOG00000004301) #28	hoxd12a (ENSGMOG00000024373) #29	evx2 (ENSGMOG00000036423) #31	lnpa (ENSGMOG00000004346) #32	atp5mc3a (ENSGMOG00000004380) ##34	ATF2 (ENSGMOG00000004396) #35	CHN1 (ENSGMOG00000036951) ##36	CHRNA1 (ENSGMOG00000004453)	GPR155 (ENSGMOG00000004473)	scrn3 (ENSGMOG00000004519)
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	18	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781	ENSGT00390000015769.B	ENSGT00940000160994	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059.j #17	ENSGT00940000157883.a.b.f.vb.a	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.c #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266.h #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e.c #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01000000221798	ENSGT01030000234635.a.b.a.b.b.b.e.b ##36	ENSGT00940000156851.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	401	ENSGT00950000182897.B.a.b.b.a.b	ENSGT00940000160594.h	ENSGT00940000155318.b.a.b.d	ENSGT00940000155972.B.cb	ENSGT00940000153476.b.o.a.b	ENSGT00940000157974.c	ENSGT00940000153514.b.n	ENSGT00940000160642.j	ENSGT00940000158781.d	ENSGT00940000160994.f	ENSGT00940000157618.t #15	ENSGT00940000156791.l #16	ENSGT00680000100059.j #17	ENSGT00940000157883.a.b.f.vb.a.a	ENSGT00940000156112.d.b #21	ENSGT00950000182892.a.a.b.c.a #22	ENSGT00940000154808.a.a.o.a	ENSGT00940000157270.t	ENSGT00940000160027.d	ENSGT00940000160866.gb	ENSGT00940000158266.h.b #27	ENSGT00940000161308.d #28	ENSGT00940000159938.b #29	ENSGT00940000161025.m.b #31	ENSGT00390000001859.e.d #32	ENSGT00940000154298.b.a.a.a ##34	ENSGT00940000156582.n #35
Huchen	MODERN SPECIES	2325												ENSHHUG00000045348	rbm45 (ENSHHUG00000045351) #17	ENSHHUG00000045355	agps (ENSHHUG00000045428) #21	nfe2l2a (ENSHHUG00000045591) #22	hnrnpa3 (ENSHHUG00000045639)
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000160594.h	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT00940000155318.b.a.b.d	ENSGT00940000155972.B.cb	ENSGT00940000153476.b.o.a.b	ENSGT00940000157974.c	ENSGT00940000153514.b.n	ENSGT00940000160642.j	ENSGT00940000158781.d	ENSGT00940000160994.f	ENSGT00940000157618.t #15	ENSGT00940000156791.l #16	ENSGT00680000100059.j #17	ENSGT00940000157883.a.b.f.vb.a.a	ENSGT00940000156112.d.b #21	ENSGT00950000182892.a.a.b.c.a #22	ENSGT00940000154808.a.a.o.a	ENSGT00940000160027.d	ENSGT00940000157270.t	ENSGT00940000160866.gb	ENSGT00940000158266.h.b #27	ENSGT00940000161308.d #28	ENSGT00940000159938.b #29	ENSGT01000000220984	ENSGT00940000161025.m.b #31	ENSGT00390000001859.e.d #32	ENSGT00940000154298.b.a.a.a ##34	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.a.a.b	ENSGT00940000164416	ENSGT00390000003873.m	ENSGT00950000182936.a.a.a.j.a
Oncorhynchus	ANCESTRAL SPECIES	13	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.b.b.a	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT00940000155318.b.a.b.d	ENSGT00940000155972.B.cb	ENSGT00940000153476.b.o.a.b	ENSGT00940000157974.c	ENSGT00990000212112	ENSGT00940000160642.j	ENSGT00940000158781.d	ENSGT00940000160994.f	ENSGT00940000157618.t #15	ENSGT00940000156791.l #16	ENSGT00680000100059.j #17	ENSGT00940000157883.a.b.f.vb.a.a	ENSGT00940000156112.d.b #21	ENSGT00950000182892.a.a.b.c.a #22	ENSGT00940000154808.a.a.o.a	ENSGT00940000160027.d	ENSGT00940000157270.t	ENSGT00940000160866.gb	ENSGT00940000158266.h.b #27	ENSGT00940000161308.d #28	ENSGT00940000159938.b #29	ENSGT01000000220984	ENSGT00940000161025.m.b #31	ENSGT00390000001859.e.d #32	ENSGT00940000154298.b.a.a.a ##34	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.a.a.b.a	ENSGT00940000164416	ENSGT00390000003873.m.a	ENSGT00950000182936.a.a.a.j.a
Oncorhynchus_a	ANCESTRAL SPECIES	11	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.b.b.a	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT00940000155318.b.a.b.d	ENSGT00940000155972.B.cb	ENSGT00940000153476.b.o.a.b	ENSGT00940000157974.c	ENSGT00990000212112	ENSGT00940000160642.j	ENSGT00940000158781.d	ENSGT00940000160994.f	ENSGT00940000157618.t #15	ENSGT00940000156791.l #16	ENSGT00680000100059.j #17	ENSGT00940000157883.a.b.f.vb.a.a	ENSGT00940000156112.d.b #21	ENSGT00950000182892.a.a.b.c.a #22	ENSGT00940000154808.a.a.o.a	ENSGT00940000160027.d	ENSGT00940000157270.t	ENSGT00940000160866.gb	ENSGT00940000158266.h.b #27	ENSGT00940000161308.d #28	ENSGT00940000159938.b #29	ENSGT01000000220984	ENSGT00940000161025.m.b #31	ENSGT00390000001859.e.d #32	ENSGT00940000154298.b.a.a.a ##34	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.a.a.b.a	ENSGT00940000164416	ENSGT00390000003873.m.a	ENSGT00950000182936.a.a.a.j.a
Chinook salmon	MODERN SPECIES	18	ENSOTSG00005017093	ENSOTSG00005017094	FARP1 (ENSOTSG00005017102)	DOCK9 (ENSOTSG00005017228)	STK24 (ENSOTSG00005044523)	INO80D (ENSOTSG00005044544)	ENSOTSG00005044546	CMKLR2 (ENSOTSG00005044548)	ENSOTSG00005044552	ENSOTSG00005044569	prkra (ENSOTSG00005044570) #15	OSBPL6 (ENSOTSG00005044574) #16	rbm45 (ENSOTSG00005044575) #17	cycsb (ENSOTSG00005044576)	agps (ENSOTSG00005044597) #21	nfe2l2a (ENSOTSG00005045902) #22	hnrnpa3 (ENSOTSG00005045950)	ENSOTSG00005045952	ENSOTSG00005045954	ENSOTSG00005045955	ercc1 (ENSOTSG00005045956)	olig1 (ENSOTSG00005045957)	olig2 (ENSOTSG00005045958)	nup35 (ENSOTSG00005045959)	ENSOTSG00005045962	serpine3 (ENSOTSG00005045964)	ENSOTSG00005045965	ihha (ENSOTSG00005045966)	ptprna (ENSOTSG00005045967)	ENSOTSG00005045968	ENSOTSG00005045969
Coho salmon	MODERN SPECIES	18	ENSOKIG00005010152	ENSOKIG00005010181	FARP1 (ENSOKIG00005010233)	DOCK9 (ENSOKIG00005011248)	ENSOKIG00005030959	INO80D (ENSOKIG00005031209)	CMKLR2 (ENSOKIG00005031349)	ENSOKIG00005031448	ENSOKIG00005031841	prkra (ENSOKIG00005031859) #15	OSBPL6 (ENSOKIG00005032043) #16	rbm45 (ENSOKIG00005034624) #17	ENSOKIG00005034653	ENSOKIG00005034671	agps (ENSOKIG00005034721) #21	nfe2l2a (ENSOKIG00005035115) #22	hnrnpa3 (ENSOKIG00005035216)	ENSOKIG00005035231	hoxd3a (ENSOKIG00005035240)	hoxd4a (ENSOKIG00005035277)	ENSOKIG00005035300	hoxd10a (ENSOKIG00005035320) #27	hoxd11a (ENSOKIG00005035344) #28	hoxd12a (ENSOKIG00005035371) #29	evx2 (ENSOKIG00005035393) #31	lnpa (ENSOKIG00005035424) #32	ENSOKIG00005035539	ATF2 (ENSOKIG00005035589) #35	ENSOKIG00005035659	ENSOKIG00005035685	ENSOKIG00005035693
Rainbow trout	MODERN SPECIES	14	ENSOMYG00000019458	ENSOMYG00000019824	ENSOMYG00000073097	ENSOMYG00000022640	ENSOMYG00000022657	ENSOMYG00000022667	ENSOMYG00000074865	ENSOMYG00000070686	ENSOMYG00000022703	prkra (ENSOMYG00000022718) #15	OSBPL6 (ENSOMYG00000022745) #16	ENSOMYG00000072268	rbm45 (ENSOMYG00000022770) #17	ENSOMYG00000022793	agps (ENSOMYG00000023081) #21	nfe2l2a (ENSOMYG00000023416) #22	hnrnpa3 (ENSOMYG00000023446)	ENSOMYG00000074773	hoxd3a (ENSOMYG00000049485)	hoxd4a (ENSOMYG00000023496)	ENSOMYG00000023519	hoxd10a (ENSOMYG00000023552) #27	hoxd11a (ENSOMYG00000023566) #28	evx2 (ENSOMYG00000023582) #31	lnpa (ENSOMYG00000023662) #32	atp5mc3a (ENSOMYG00000023768) ##34	ATF2 (ENSOMYG00000023811) #35	ENSOMYG00000061091	ENSOMYG00000071986	ENSOMYG00000035388	ENSOMYG00000035384
Salmo	ANCESTRAL SPECIES	10	ENSGT01050000244823.d.a.b.a.a.b.b.b	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.b	ENSGT00940000155318.b.a.b.d	ENSGT00940000155972.B.cb	ENSGT00940000153476.b.o.a.b	ENSGT00940000157974.c	ENSGT00940000153514.b.n	ENSGT00940000160642.j	ENSGT00940000158781.d	ENSGT00940000160994.f	ENSGT00940000157618.t #15	ENSGT00940000156791.l #16	ENSGT00680000100059.j #17	ENSGT00940000157883.a.b.f.vb.a.a	ENSGT00940000156112.d.b #21	ENSGT00950000182892.a.a.b.c.a #22	ENSGT00940000154808.a.a.o.a	ENSGT00940000160027.d	ENSGT00940000157270.t	ENSGT00940000161503.a.c	ENSGT00940000158266.h.b #27	ENSGT00940000161308.d #28	ENSGT00940000159938.b #29	ENSGT01000000220984	ENSGT00940000161025.m.b #31	ENSGT00390000001859.e.d #32	ENSGT00940000157981.a.a.b.b	ENSGT00940000156582.n #35	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.a.b.a	ENSGT01050000244823.d.a.b.a.a.b.a.b.a.b.b.a.a	ENSGT00940000164416
Atlantic salmon	MODERN SPECIES	13	ENSSSAG00000089995	FARP1 (ENSSSAG00000086641)	ENSSSAG00000050282	ENSSSAG00000066871	ENSSSAG00000097932	ENSSSAG00000066879	ENSSSAG00000067506	ENSSSAG00000067509	ENSSSAG00000067511	ENSSSAG00000067526	ENSSSAG00000067744	prkra (ENSSSAG00000067754) #15	ENSSSAG00000067836 #16	ENSSSAG00000107935	rbm45 (ENSSSAG00000070764) #17	nf2l2 (ENSSSAG00000072873) #22	hnrnpa3 (ENSSSAG00000072882)	hoxd3ab (ENSSSAG00000072911)	hoxd4ab (ENSSSAG00000072913)	hoxd9ab (ENSSSAG00000072921)	hoxd10ab (ENSSSAG00000072925) #27	hoxd12a (ENSSSAG00000072927) #29	ENSSSAG00000099792	evx2 (ENSSSAG00000112174) #31	LNPA (ENSSSAG00000072944) #32	AT5G3 (ENSSSAG00000097550) ##34	ATF2 (ENSSSAG00000072981) #35	ENSSSAG00000095079	ENSSSAG00000034870	ENSSSAG00000084917	ENSSSAG00000107467
River trout	MODERN SPECIES	12	DOCK9 (ENSSTUG00000042342)	ENSSTUG00000041451	INO80D (ENSSTUG00000041397)	NDUFS1 (ENSSTUG00000041157)	CMKLR2 (ENSSTUG00000041146)	ADAM23 (ENSSTUG00000040139)	ENSSTUG00000040122	ENSSTUG00000040093	prkra (ENSSTUG00000040084) #15	ENSSTUG00000040073	ENSSTUG00000040059	OSBPL6 (ENSSTUG00000034789) #16	rbm45 (ENSSTUG00000034593) #17	ENSSTUG00000034579	agps (ENSSTUG00000033702) #21	nfe2l2a (ENSSTUG00000033577) #22	hnrnpa3 (ENSSTUG00000033528)	ENSSTUG00000033512	hoxd4a (ENSSTUG00000033499)	hoxd3a (ENSSTUG00000033467)	hoxd10a (ENSSTUG00000033441) #27	hoxd11a (ENSSTUG00000033429) #28	hoxd12a (ENSSTUG00000033416) #29	ENSSTUG00000033400	evx2 (ENSSTUG00000033394) #31	lnpa (ENSSTUG00000033382) #32	ENSSTUG00000033289	ATF2 (ENSSTUG00000033241) #35	ENSSTUG00000033234	ENSSTUG00000033231	ENSSTUG00000033214
Salmoninae	ANCESTRAL SPECIES	7	ENSGT00940000155318.b.a.b.c	ENSGT00940000155972.B.bb	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a.a	ENSGT00940000157974.d	ENSGT00940000153514.b.m.a	ENSGT00940000160642.i	ENSGT00940000158781.c	ENSGT00390000015769.B	ENSGT00940000160994.e	ENSGT00940000157618.s #15	ENSGT00940000156791.k #16	ENSGT00940000157883.a.b.f.vb.a.b	ENSGT00940000164264	ENSGT00940000156112.d.a #21	ENSGT00950000182892.a.a.b.c.b #22	ENSGT00940000154808.a.a.o.b	ENSGT00940000160027.c	ENSGT00940000157270.s	ENSGT00940000161503.a	ENSGT00940000158266.h.a #27	ENSGT00940000161308.c #28	ENSGT00940000159938.a #29	ENSGT00940000161457 #30	ENSGT00940000161025.m.a #31	ENSGT00390000001859.e.c #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582.m #35	ENSGT00940000161826.C.bb	ENSGT01000000221798	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##36
Salmoninae_a	ANCESTRAL SPECIES		ENSGT00940000155318.b.a.b.c	ENSGT00940000155972.B.bb	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a.a	ENSGT00940000157974.d	ENSGT00940000153514.b.m.a	ENSGT00940000160642.i	ENSGT00940000158781.c	ENSGT00390000015769.B	ENSGT00940000160994.e	ENSGT00940000157618.s #15	ENSGT00940000156791.k #16	ENSGT00940000157883.a.b.f.vb.a.b	ENSGT00940000164264	ENSGT00940000156112.d.a #21	ENSGT00950000182892.a.a.b.c.b #22	ENSGT00940000154808.a.a.o.b	ENSGT00940000160027.c	ENSGT00940000157270.s	ENSGT00940000161503.a	ENSGT00940000158266.h.a #27	ENSGT00940000161308.c #28	ENSGT00940000159938.a #29	ENSGT00940000161457 #30	ENSGT00940000161025.m.a #31	ENSGT00390000001859.e.c #32	ENSGT00940000157981.a.a.b.a	ENSGT00940000156582.m #35	ENSGT00940000161826.C.bb	ENSGT01000000221798	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##36
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000155318.b.a.b.c	ENSGT00940000155972.B.bb	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a.a	ENSGT00940000157974.d	ENSGT00940000153514.b.m.a	ENSGT00940000160642.i	ENSGT00940000158781.c	ENSGT00390000015769.B	ENSGT00940000160994.e	ENSGT00940000157618.s #15	ENSGT00940000156791.k #16	ENSGT00940000157883.a.b.f.vb.a.b	ENSGT00940000164264	ENSGT00940000156112.d.a #21	ENSGT00950000182892.a.a.b.c.b #22	ENSGT00940000154808.a.a.o.b	ENSGT00940000160027.c	ENSGT00940000157270.s	ENSGT00940000161503.a	ENSGT00940000158266.h.a #27	ENSGT00940000161308.c #28	ENSGT00940000159938.a #29	ENSGT00940000161457 #30	ENSGT00940000161025.m.a #31	ENSGT00390000001859.e.c #32	ENSGT00940000157981.a.a.b.a	ENSGT00940000156582.m #35	ENSGT00940000161826.C.bb	ENSGT01000000221798	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##36
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000176946.b	ENSGT00940000155972.B.bb	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a.a	ENSGT00940000157974.d	ENSGT00940000153514.b.m.a	ENSGT00940000160642.i	ENSGT00940000158781.c	ENSGT00390000015769.B	ENSGT00940000160994.e	ENSGT00940000157618.s #15	ENSGT00940000156791.k #16	ENSGT00940000157883.a.b.f.vb.a.b	ENSGT00940000164264	ENSGT00940000156112.d.a #21	ENSGT00950000182892.a.a.b.c.b #22	ENSGT00940000154808.a.a.o.b	ENSGT00940000160027.c	ENSGT00940000157270.s	ENSGT00940000161503.a	ENSGT00940000158266.h.a #27	ENSGT00940000161308.c #28	ENSGT00940000159938.a #29	ENSGT00940000161457 #30	ENSGT00940000161025.m.a #31	ENSGT00390000001859.e.c #32	ENSGT00940000157981.a.a.b.a	ENSGT00940000156582.m #35	ENSGT01000000221798	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##36	ENSGT00940000156851.c.c
Chinook salmon	MODERN SPECIES	22	dct (ENSOTSG00005026771)	sox21b (ENSOTSG00005026763)	ABCC4 (ENSOTSG00005026446)	cldn10b (ENSOTSG00005026438)	ENSOTSG00005026436	CLDN10 (ENSOTSG00005026435)	dnajc3a (ENSOTSG00005026434)	UGGT2 (ENSOTSG00005019373)	HS6ST3 (ENSOTSG00005019339)	OXGR1 (ENSOTSG00005019338)	MBNL2 (ENSOTSG00005019337)	RAP2A (ENSOTSG00005019336)	FARP1 (ENSOTSG00005018865)	ENSOTSG00005018849	AGPS (ENSOTSG00005018847) #21	nfe2l2a (ENSOTSG00005018824) #22	hnrnpa3 (ENSOTSG00005018821)	ENSOTSG00005018816	hoxd3a (ENSOTSG00005018812)	hoxd4a (ENSOTSG00005018809)	hoxd9a (ENSOTSG00005018803)	hoxd10a (ENSOTSG00005018801) #27	hoxd11a (ENSOTSG00005018797) #28	hoxd12a (ENSOTSG00005018793) #29	HOXD13 (ENSOTSG00005018789) #30	evx2 (ENSOTSG00005018785) #31	lnpa (ENSOTSG00005018779) #32	ENSOTSG00005018698	ATF2 (ENSOTSG00005018692) #35	ENSOTSG00005018690	ENSOTSG00005018687 ##36
Coho salmon	MODERN SPECIES	11	ENSOKIG00005030798	DOCK9 (ENSOKIG00005028370)	SLC15A1 (ENSOKIG00005026269)	STK24 (ENSOKIG00005025874)	INO80D (ENSOKIG00005025836)	NDUFS1 (ENSOKIG00005025190)	CMKLR2 (ENSOKIG00005025167)	ADAM23 (ENSOKIG00005024317)	FAM237A (ENSOKIG00005024261)	ENSOKIG00005024257	prkra (ENSOKIG00005024246) #15	OSBPL6 (ENSOKIG00005020386) #16	ENSOKIG00005020200	ENSOKIG00005020172	agps (ENSOKIG00005019901) #21	nfe2l2a (ENSOKIG00005028699) #22	hnrnpa3 (ENSOKIG00005028673)	ENSOKIG00005028665	ENSOKIG00005028652	hoxd3a (ENSOKIG00005028636)	hoxd4a (ENSOKIG00005028622)	hoxd9a (ENSOKIG00005028604)	hoxd10a (ENSOKIG00005028587) #27	hoxd11a (ENSOKIG00005028569) #28	hoxd12a (ENSOKIG00005028551) #29	HOXD13 (ENSOKIG00005028533) #30	evx2 (ENSOKIG00005028522) #31	lnpa (ENSOKIG00005028423) #32	ENSOKIG00005028325	ATF2 (ENSOKIG00005028276) #35	ENSOKIG00005028187 ##36
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000031992	STK24 (ENSOMYG00000022511)	INO80D (ENSOMYG00000031575)	NDUFS1 (ENSOMYG00000031087)	CMKLR2 (ENSOMYG00000031001)	ADAM23 (ENSOMYG00000030881)	FAM237A (ENSOMYG00000064639)	ENSOMYG00000030743	prkra (ENSOMYG00000030727) #15	ENSOMYG00000030172 #16	ENSOMYG00000001314	ENSOMYG00000029761	ENSOMYG00000069592	ENSOMYG00000029706	agps (ENSOMYG00000025901) #21	nfe2l2a (ENSOMYG00000024868) #22	hnrnpa3 (ENSOMYG00000024811)	ENSOMYG00000024731	hoxd3a (ENSOMYG00000024709)	hoxd4a (ENSOMYG00000024685)	hoxd9a (ENSOMYG00000024667)	hoxd10a (ENSOMYG00000058693) #27	hoxd11a (ENSOMYG00000024632) #28	hoxd12a (ENSOMYG00000024576) #29	HOXD13 (ENSOMYG00000024568) #30	evx2 (ENSOMYG00000024554) #31	lnpa (ENSOMYG00000024451) #32	ENSOMYG00000024344	ATF2 (ENSOMYG00000024297) #35	ENSOMYG00000023622	ENSOMYG00000060012
Salmo	ANCESTRAL SPECIES	15	ENSGT00940000155318.b.a.b.c	ENSGT00940000155972.B.bb	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a.a	ENSGT00940000157974.d	ENSGT00940000153514.b.m.a	ENSGT00940000160642.i	ENSGT00940000158781.c	ENSGT00390000015769.B	ENSGT00940000160994.e	ENSGT00940000157618.s #15	ENSGT00940000156791.k #16	ENSGT00940000157883.a.b.f.vb.a.b	ENSGT00940000164264	ENSGT00940000156112.d.a #21	ENSGT00950000182892.a.a.b.c.b #22	ENSGT00940000154808.a.a.o.b	ENSGT00940000160027.c	ENSGT00940000157270.s	ENSGT00940000161503.a.d	ENSGT00940000158266.h.a #27	ENSGT00940000161308.c #28	ENSGT00940000159938.a #29	ENSGT00940000161457 #30	ENSGT00940000161025.m.a #31	ENSGT00390000001859.e.c #32	ENSGT00940000157981.a.a.b.a	ENSGT00940000156582.m #35	ENSGT00940000161826.C.bb	ENSGT01030000234635.a.b.a.b.b.b.e.b.a ##36	ENSGT00940000156851.c.c
River trout	MODERN SPECIES	16	DOCK9 (ENSSTUG00000049451)	SLC15A1 (ENSSTUG00000047400)	STK24 (ENSSTUG00000047087)	INO80D (ENSSTUG00000047067)	NDUFS1 (ENSSTUG00000046938)	CMKLR2 (ENSSTUG00000046936)	ADAM23 (ENSSTUG00000046527)	FAM237A (ENSSTUG00000046514)	ENSSTUG00000046510	ENSSTUG00000046494	prkra (ENSSTUG00000046491) #15	OSBPL6 (ENSSTUG00000044669) #16	ENSSTUG00000044594	ENSSTUG00000044546	agps (ENSSTUG00000043222) #21	nfe2l2a (ENSSTUG00000043132) #22	hnrnpa3 (ENSSTUG00000043022)	ENSSTUG00000043006	hoxd3a (ENSSTUG00000042989)	hoxd4a (ENSSTUG00000042983)	hoxd9a (ENSSTUG00000042958)	hoxd10a (ENSSTUG00000042936) #27	hoxd11a (ENSSTUG00000042899) #28	hoxd12a (ENSSTUG00000042891) #29	HOXD13 (ENSSTUG00000042876) #30	evx2 (ENSSTUG00000042848) #31	lnpa (ENSSTUG00000042723) #32	ENSSTUG00000042498	ATF2 (ENSSTUG00000042386) #35	ENSSTUG00000041985	ENSSTUG00000041810 ##36
Atlantic salmon	MODERN SPECIES	17	STK24 (ENSSSAG00000076047)	ino80d (ENSSSAG00000076036)	NDUFS1 (ENSSSAG00000075973)	CMKLR2 (ENSSSAG00000105275)	ADAM23 (ENSSSAG00000074953)	FAM237A (ENSSSAG00000074893)	ENSSSAG00000091412	ENSSSAG00000074890	ENSSSAG00000108953	prkra (ENSSSAG00000074885) #15	ENSSSAG00000087255	ENSSSAG00000070393 #16	CYC (ENSSSAG00000070257)	ENSSSAG00000070236	agps (ENSSSAG00000064751) #21	nfe2l2a (ENSSSAG00000064591) #22	hnrnpa3 (ENSSSAG00000064576)	hoxd1aa (ENSSSAG00000064567)	hoxd3a (ENSSSAG00000064556)	hoxd4a (ENSSSAG00000064551)	hoxd9a (ENSSSAG00000120867)	hoxd10a (ENSSSAG00000064533) #27	hoxd11a (ENSSSAG00000064520) #28	hoxd12a (ENSSSAG00000064512) #29	HOXD13 (ENSSSAG00000064509) #30	evx2 (ENSSSAG00000087182) #31	lnpa (ENSSSAG00000064476) #32	atp5g3 (ENSSSAG00000106339)	ATF2 (ENSSSAG00000063467) #35	ENSSSAG00000063428	ENSSSAG00000063380 ##36
Huchen	MODERN SPECIES	7	FARP1 (ENSHHUG00000036487)	DOCK9 (ENSHHUG00000035445)	SLC15A1 (ENSHHUG00000035209)	STK24 (ENSHHUG00000034752)	INO80D (ENSHHUG00000034725)	NDUFS1 (ENSHHUG00000034654)	CMKLR2 (ENSHHUG00000034650)	ADAM23 (ENSHHUG00000034486)	FAM237A (ENSHHUG00000034479)	ENSHHUG00000034465	prkra (ENSHHUG00000034458) #15	OSBPL6 (ENSHHUG00000034033) #16	ENSHHUG00000033983	ENSHHUG00000033970	agps (ENSHHUG00000033666) #21	nfe2l2a (ENSHHUG00000033612) #22	hnrnpa3 (ENSHHUG00000033596)	ENSHHUG00000033593	hoxd4a (ENSHHUG00000033580)	hoxd3a (ENSHHUG00000033566)	hoxd9a (ENSHHUG00000033557)	hoxd10a (ENSHHUG00000033547) #27	hoxd11a (ENSHHUG00000033535) #28	hoxd12a (ENSHHUG00000033527) #29	ENSHHUG00000033440 #30	evx2 (ENSHHUG00000033438) #31	lnpa (ENSHHUG00000033418) #32	atp5mc3a (ENSHHUG00000033316) ##34	ATF2 (ENSHHUG00000033298) #35	ENSHHUG00000033295	ENSHHUG00000033292
Northern pike	MODERN SPECIES	15	FARP1 (ENSELUG00000003196)	DOCK9 (ENSELUG00000024595)	SLC15A1 (ENSELUG00000024361)	STK24 (ENSELUG00000023700)	INO80D (ENSELUG00000023689)	NDUFS1 (ENSELUG00000023649)	CMKLR2 (ENSELUG00000023346)	ADAM23 (ENSELUG00000023532)	FAM237A (ENSELUG00000023331)	ENSELUG00000023324	OSBPL6 (ENSELUG00000023307) #16	rbm45 (ENSELUG00000023238) #17	ENSELUG00000023205	ENSELUG00000023192	agps (ENSELUG00000023163) #21	nfe2l2a (ENSELUG00000023096) #22	hnrnpa3 (ENSELUG00000023080)	ENSELUG00000023012	hoxd4a (ENSELUG00000024879)	hoxd3a (ENSELUG00000023003)	HXD9A (ENSELUG00000022987)	hoxd10a (ENSELUG00000022940) #27	hoxd11a (ENSELUG00000022931) #28	hoxd12a (ENSELUG00000022918) #29	HOXD13 (ENSELUG00000022904) #30	evx2 (ENSELUG00000001336) #31	lnpa (ENSELUG00000022797) #32	ENSELUG00000021556	ATF2 (ENSELUG00000000967) #35	ENSELUG00000034644	ENSELUG00000027167 ##36
Protacanthopterygii	ANCESTRAL SPECIES	191															ENSGT00940000157883.a.b.f.vb.b	ENSGT00950000182892.a.a.b.d #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a	ENSGT00940000160909.f.b	ENSGT00390000016619.a.i	ENSGT00940000156472.c	ENSGT00940000160192.a	ENSGT00940000160478.f	ENSGT00940000158443.n	ENSGT00940000155611.k	ENSGT00940000155850 #12	ENSGT00940000156564.b	ENSGT00390000006347.b
Salmoninae	ANCESTRAL SPECIES	449													ENSGT00390000015818.g.a	ENSGT00680000100059.i #17	ENSGT00940000157883.a.b.f.vb.b	ENSGT00950000182892.a.a.b.d #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a.a	ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##36	ENSGT00940000160909.f.b	ENSGT00390000016619.a.i	ENSGT00940000156472.c	ENSGT00940000160192.a	ENSGT00940000160478.f.a	ENSGT00940000158443.n	ENSGT00940000155611.k	ENSGT00940000155850.vb.a #12	ENSGT00940000156564.b.c.b	ENSGT00390000006347.b	ENSGT00940000161024.b
Salmoninae_a	ANCESTRAL SPECIES	66													ENSGT00390000015818.g.a	ENSGT00680000100059.i #17	ENSGT00940000157883.a.b.f.vb.b	ENSGT00950000182892.a.a.b.d #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a.a	ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##36	ENSGT00940000160909.f.b	ENSGT00390000016619.a.i	ENSGT00940000156472.c	ENSGT00940000160192.a	ENSGT00940000160478.f.a	ENSGT00940000158443.n	ENSGT00940000155611.k	ENSGT00940000155850.wb #12	ENSGT00940000156564.b.c.b	ENSGT00390000006347.b.a	ENSGT00940000161024.b
Salmo	ANCESTRAL SPECIES	41													ENSGT00390000015818.g.a	ENSGT00680000100059.i #17	ENSGT00940000157883.a.b.f.vb.b	ENSGT00950000182892.a.a.b.d #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a.a	ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##36	ENSGT00940000160909.f.b	ENSGT00390000016619.a.i	ENSGT00940000156472.c	ENSGT00940000160192.a	ENSGT00940000160478.f.a	ENSGT00940000158443.n	ENSGT00940000155611.k	ENSGT00940000155850.wb #12	ENSGT00940000156564.b.c.b	ENSGT00390000006347.b.a	ENSGT00940000161024.b
River trout	MODERN SPECIES	32													zc3h15 (ENSSTUG00000042106)	rbm45 (ENSSTUG00000042057) #17	cycsb (ENSSTUG00000042031)	nfe2l2a (ENSSTUG00000042007) #22	mtx2 (ENSSTUG00000041772) #24	ENSSTUG00000041751	lnpk (ENSSTUG00000041618) #32	atp5mc3b (ENSSTUG00000041583)	ENSSTUG00000041302 ##36	ENSSTUG00000041279	nckap1 (ENSSTUG00000039584)	dusp19b (ENSSTUG00000039510)	ppp1r1c (ENSSTUG00000039496)	neurod1 (ENSSTUG00000039485)	ENSSTUG00000039453	znf385b (ENSSTUG00000039440)	plekha3 (ENSSTUG00000049416) #12	ankrd10a (ENSSTUG00000049413)	CARS2 (ENSSTUG00000049001)
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000106753	ENSSSAG00000090687	lrrc4.2 (ENSSSAG00000118341)	HGF (ENSSSAG00000047982)	CACNA2D1 (ENSSSAG00000040218)	ENSSSAG00000083616	sema3e (ENSSSAG00000093380)	sema3ab (ENSSSAG00000088799)	zc3hf (ENSSSAG00000056593)	ENSSSAG00000096560	ENSSSAG00000104947	ENSSSAG00000099826	ENSSSAG00000094195 #17	ENSSSAG00000113645	cycsb (ENSSSAG00000007248)	ENSSSAG00000007251 #22	mtx2 (ENSSSAG00000007259) #24	lnpk (ENSSSAG00000007280) #32	AT5G3 (ENSSSAG00000007320)	ENSSSAG00000055202 ##36	ENSSSAG00000007345 ##36	ENSSSAG00000007417	ENSSSAG00000007488	ENSSSAG00000108732	ENSSSAG00000107573	ENSSSAG00000101890	ENSSSAG00000025750	ENSSSAG00000026988	ENSSSAG00000027337 #12	ankrd10a (ENSSSAG00000111913)	ENSSSAG00000028027
Oncorhynchus	ANCESTRAL SPECIES	43												ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.b.b.b.a.b	ENSGT00390000015818.g.a	ENSGT00680000100059.i #17	ENSGT00940000157883.a.b.f.vb.b	ENSGT00950000182892.a.a.b.d #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f.c.a #32	ENSGT00940000154298.b.a.b ##34	ENSGT00390000001859.f.d #32	ENSGT00940000157981.a.a.a.a	ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##36	ENSGT00940000160909.f.b	ENSGT00390000016619.a.i	ENSGT00940000156472.c	ENSGT00940000160192.a	ENSGT00940000160478.f.a	ENSGT00940000158443.n	ENSGT00940000155611.k	ENSGT00940000155850.wb.a #12	ENSGT00940000156564.b.c.b
Oncorhynchus_a	ANCESTRAL SPECIES	77										ENSGT00940000162179.e.a.a.i.b.b.b.a.b.a.a.b.a.a.b.a.a	ENSGT00940000153582.a.m.a.a.b.b.b.a.a.b.a.b.b	ENSGT00940000153582.a.m.a.a.b.b.b.b.b.a.b.a.a.a.a.b.b.a.b.b.b	ENSGT00390000015818.g.a	ENSGT00680000100059.i #17	ENSGT00940000157883.a.b.f.vb.b	ENSGT00950000182892.a.a.b.d #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f.c.a #32	ENSGT00940000154298.b.a.b ##34	ENSGT00390000001859.f.d #32	ENSGT00940000157981.a.a.a.a	ENSGT01030000234635.a.b.a.b.b.b.e.a.a ##36	ENSGT00940000160909.f.b	ENSGT00390000016619.a.i	ENSGT00940000156472.c	ENSGT00940000160192.a	ENSGT00940000160478.f.a	ENSGT00940000158443.n	ENSGT00940000155611.k	ENSGT00940000155850.wb.a #12	ENSGT00940000156564.b.c.b
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	36					ENSOTSG00005022576	ENSOTSG00005022575	ENSOTSG00005022572	ENSOTSG00005022570	ENSOTSG00005022569	ENSOTSG00005022568	ENSOTSG00005022567	ENSOTSG00005022565	ENSOTSG00005022564	zc3h15 (ENSOTSG00005022563)	rbm45 (ENSOTSG00005022562) #17	nfe2l2a (ENSOTSG00005022553) #22	mtx2 (ENSOTSG00005022552) #24	ENSOTSG00005022551 #32	ENSOTSG00005022546 ##34	ENSOTSG00005022469 ##36	ENSOTSG00005022466	nckap1 (ENSOTSG00005020380)	dusp19b (ENSOTSG00005020328)	ppp1r1c (ENSOTSG00005020325)	neurod1 (ENSOTSG00005020322)	ENSOTSG00005020316	znf385b (ENSOTSG00005020315)	plekha3 (ENSOTSG00005020284) #12	ankrd10a (ENSOTSG00005020281)	CARS2 (ENSOTSG00005020049)	rab20 (ENSOTSG00005020008)
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005031005	ENSOTSG00005031004	ENSOTSG00005031003	ENSOTSG00005031002	ENSOTSG00005031001	ENSOTSG00005031000	ENSOTSG00005030999	ENSOTSG00005030998	ENSOTSG00005030997	ENSOTSG00005030996	ENSOTSG00005030995	ENSOTSG00005030992	ENSOTSG00005030982	zc3h15 (ENSOTSG00005030980)	rbm45 (ENSOTSG00005030964) #17	nfe2l2a (ENSOTSG00005030963) #22	mtx2 (ENSOTSG00005030960) #24	ENSOTSG00005030957 #32	ENSOTSG00005030936 ##34	ENSOTSG00005030931 ##36	ENSOTSG00005030929	nckap1 (ENSOTSG00005030733)	dusp19b (ENSOTSG00005030708)	ppp1r1c (ENSOTSG00005030707)	neurod1 (ENSOTSG00005030706)	ENSOTSG00005030702	znf385b (ENSOTSG00005030701)	plekha3 (ENSOTSG00005030700) #12	ankrd10a (ENSOTSG00005030699)	CARS2 (ENSOTSG00005030503)	rab20 (ENSOTSG00005030492)
Chinook salmon	MODERN SPECIES	12	ENSOTSG00005036447	fcho2 (ENSOTSG00005036544)	foxd1 (ENSOTSG00005036907)	btf3 (ENSOTSG00005036909)	ankra2 (ENSOTSG00005036911)	ARHGEF28 (ENSOTSG00005036917)	ENSOTSG00005036918	ENSOTSG00005036921	ENSOTSG00005036925	ENSOTSG00005036926	ENSOTSG00005036927	ENSOTSG00005036928	ENSOTSG00005036929	zc3h15 (ENSOTSG00005036930)	rbm45 (ENSOTSG00005036931) #17	nfe2l2a (ENSOTSG00005036933) #22	mtx2 (ENSOTSG00005036938) #24	ENSOTSG00005036943 #32	atp5mc3b (ENSOTSG00005036946)	ENSOTSG00005036982 ##36	ENSOTSG00005037008	nckap1 (ENSOTSG00005037021)	dusp19b (ENSOTSG00005037417)	ppp1r1c (ENSOTSG00005037418)	neurod1 (ENSOTSG00005037420)	ENSOTSG00005037421	znf385b (ENSOTSG00005037424)	plekha3 (ENSOTSG00005037426) #12	ankrd10a (ENSOTSG00005037430)	CARS2 (ENSOTSG00005037450)	rab20 (ENSOTSG00005040160)
Chinook salmon	MODERN SPECIES	36	ENSOTSG00005046860	slc39a1 (ENSOTSG00005046861)	prmt3 (ENSOTSG00005046862)	slc6a5 (ENSOTSG00005046863)	NELL1 (ENSOTSG00005046864)	ENSOTSG00005046866	ENSOTSG00005046867	ENSOTSG00005046868	ENSOTSG00005046869	ENSOTSG00005046870	ENSOTSG00005046871	ENSOTSG00005018884	ENSOTSG00005018885	zc3h15 (ENSOTSG00005018886)	rbm45 (ENSOTSG00005018888) #17	nfe2l2a (ENSOTSG00005018904) #22	mtx2 (ENSOTSG00005018905) #24	ENSOTSG00005018907 #32	atp5mc3b (ENSOTSG00005018908)	ENSOTSG00005018918 ##36	ENSOTSG00005019022	nckap1 (ENSOTSG00005019062)	dusp19b (ENSOTSG00005019963)	ppp1r1c (ENSOTSG00005019964)	neurod1 (ENSOTSG00005019965)	ENSOTSG00005019966	znf385b (ENSOTSG00005019969)	plekha3 (ENSOTSG00005019971) #12	ankrd10a (ENSOTSG00005019974)	CARS2 (ENSOTSG00005019981)	rab20 (ENSOTSG00005022367)
Chinook salmon	MODERN SPECIES	31	irs2a (ENSOTSG00005030491)	lig4 (ENSOTSG00005030490)	NALF1 (ENSOTSG00005030489)	cckbra (ENSOTSG00005030422)	ENSOTSG00005030418	ENSOTSG00005030416	ENSOTSG00005030414	ENSOTSG00005030413	ENSOTSG00005030411	ENSOTSG00005030410	ENSOTSG00005030409	ENSOTSG00005030407	ENSOTSG00005030400	zc3h15 (ENSOTSG00005030399)	rbm45 (ENSOTSG00005030397) #17	nfe2l2a (ENSOTSG00005030391) #22	mtx2 (ENSOTSG00005030387) #24	ENSOTSG00005030385 #32	ENSOTSG00005030357 ##34	ENSOTSG00005030355 ##36	nckap1 (ENSOTSG00005029523)	dusp19b (ENSOTSG00005029436)	ppp1r1c (ENSOTSG00005029396)	neurod1 (ENSOTSG00005029395)	ENSOTSG00005029393	znf385b (ENSOTSG00005029392)	plekha3 (ENSOTSG00005029391) #12	ankrd10a (ENSOTSG00005029390)	CARS2 (ENSOTSG00005046070)	rab20 (ENSOTSG00005046069)	irs2a (ENSOTSG00005046068)
Coho salmon	MODERN SPECIES	25	ENSOKIG00005020333	ENSOKIG00005020313	ENSOKIG00005020302	ENSOKIG00005020297	ENSOKIG00005020290	ENSOKIG00005029795	ENSOKIG00005029784	ENSOKIG00005029775	ENSOKIG00005029769	ENSOKIG00005029756	ENSOKIG00005029746	ENSOKIG00005029719	ZC3H15 (ENSOKIG00005029703)	RBM45 (ENSOKIG00005029645) #17	cycsb (ENSOKIG00005029620)	ENSOKIG00005029608 #22	mtx2 (ENSOKIG00005029590) #24	lnpk (ENSOKIG00005029543) #32	atp5mc3b (ENSOKIG00005029486)	ENSOKIG00005029320 ##36	ENSOKIG00005029248	ENSOKIG00005029233	NCKAP1 (ENSOKIG00005026774)	dusp19b (ENSOKIG00005026615)	ppp1r1c (ENSOKIG00005026609)	neurod1 (ENSOKIG00005026601)	ENSOKIG00005026481	ZNF385B (ENSOKIG00005026416)	plekha3 (ENSOKIG00005026400) #12	ANKRD10 (ENSOKIG00005026393)	CARS2 (ENSOKIG00005025734)
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000001395	ENSOMYG00000061220	ENSOMYG00000017626	ENSOMYG00000076783	ENSOMYG00000017607	ENSOMYG00000017602	ENSOMYG00000023150	ENSOMYG00000068547	ENSOMYG00000057021	ENSOMYG00000062338	ENSOMYG00000074321	ENSOMYG00000052912	ENSOMYG00000017583	ENSOMYG00000017556	ENSOMYG00000017526 #17	ENSOMYG00000017516 #22	ENSOMYG00000017484 #24	ENSOMYG00000017443 #32	ENSOMYG00000017436	ENSOMYG00000017385 ##34	ENSOMYG00000017138 ##36	ENSOMYG00000017100	ENSOMYG00000016482	ENSOMYG00000016430	ENSOMYG00000016213	ENSOMYG00000056074	NEUROD1 (ENSOMYG00000016205)	ENSOMYG00000015500	ENSOMYG00000015413	ENSOMYG00000015395 #12	ENSOMYG00000015389
Huchen	MODERN SPECIES	707																nfe2l2a (ENSHHUG00000051940) #22	mtx2 (ENSHHUG00000051932) #24	lnpk (ENSHHUG00000051902) #32	atp5mc3b (ENSHHUG00000051887)	ENSHHUG00000051881 ##36	ENSHHUG00000051878	nckap1 (ENSHHUG00000051808)	dusp19b (ENSHHUG00000051805)	zc3h15 (ENSHHUG00000051802)
Northern pike	MODERN SPECIES	21			ENSELUG00000029262	ENSELUG00000002250	n6amt1 (ENSELUG00000001748)	gart (ENSELUG00000001749)	ENSELUG00000033526	ADAMTS5 (ENSELUG00000001677)	ADAMTS1 (ENSELUG00000001676)	cyyr1 (ENSELUG00000027401)	APP (ENSELUG00000001674)	ENSELUG00000030988	zc3h15 (ENSELUG00000000912)	rbm45 (ENSELUG00000020878) #17	cyc (ENSELUG00000031437)	nfe2l2a (ENSELUG00000023412) #22	ENSELUG00000031174	mtx2 (ENSELUG00000021475) #24	ENSELUG00000028600	ENSELUG00000021531 ##36	ENSELUG00000021589 #32	ENSELUG00000001751	nckap1 (ENSELUG00000024037)	dusp19b (ENSELUG00000004223)	ENSELUG00000031879	PDE1A (ENSELUG00000004269)	ppp1r1c (ENSELUG00000004286)	neurod1 (ENSELUG00000026028)	ENSELUG00000007006	ENSELUG00000020387	znf385b (ENSELUG00000006932)
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	172	ENSGT00390000003635.g	ENSGT00950000183025.b.a.ab	ENSGT00940000165581	ENSGT00940000159854	ENSGT00940000164071.b.b	ENSGT00940000158311.a	ENSGT00940000163268.d.b	ENSGT00940000166648	ENSGT00940000159894	ENSGT00940000158988.a.a	ENSGT00940000156007.k	ENSGT00940000153305	ENSGT00950000182892.a.b.b ##22	ENSGT00390000003271	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e #22	ENSGT01030000234992	ENSGT00940000155957.b	ENSGT00940000155880.f	ENSGT00940000155348.A	ENSGT00940000156475.f	ENSGT00770000120611.B	ENSGT00940000153470.a.a.a.b	ENSGT00940000157167	ENSGT00940000154957.B	ENSGT00950000183188.B	ENSGT00390000004280	ENSGT00530000063609.b.x	ENSGT00530000063480.b	ENSGT00940000155660.a	ENSGT00940000157121
Otophysi	ANCESTRAL SPECIES	44	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a ##14	ENSGT00940000155489.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d	ENSGT00390000004153.d	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00940000154076.B.b	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01030000235214	ENSGT00530000063779.A.e.b
Cyprinoidei	ANCESTRAL SPECIES	73							ENSGT00390000014839.b.g	ENSGT00940000164909.e.b	ENSGT00940000168354.d	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f.b #32	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d	ENSGT00390000004153.d	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00940000154076.B.b.j	ENSGT00940000155518.n	ENSGT00530000063608.B.b	ENSGT00940000163423.C.g.b	ENSGT01030000235214	ENSGT00530000063779.A.e.b	ENSGT00940000158313.b.f.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	20	ENSGT00940000159898.i	ENSGT00940000156186.l.a.a.b	ENSGT00940000168325.a	ENSGT00950000183140.a.a.b ##14	ENSGT00940000155489.a.b	ENSGT00940000174917	ENSGT00730000110871.a.a.a.b.e	ENSGT00390000014839.b.g	ENSGT00940000164909.e.b.a	ENSGT00940000168354.d.b	ENSGT00940000165591.a.a	ENSGT00390000014520.n.b	ENSGT00940000165776.h	ENSGT01030000234667.a.a.a.a.b.d	ENSGT00940000157883.a.b.f.c.a	ENSGT00950000182892.a.a.b.e.a #22	ENSGT00950000182919.C.m #24	ENSGT00390000001859.f.b.b.b #32	ENSGT00940000157981.a.a.a.c.b	ENSGT00940000156851.d.c.b	ENSGT00910000144296.d	ENSGT00390000004153.d.i	ENSGT00390000000673.a.b.f	ENSGT00390000000673.a.b.e.b	ENSGT00940000155099.k.b.d	ENSGT00940000154076.B.b.i	ENSGT00940000155518.n.b	ENSGT00530000063608.B.b.a	ENSGT00940000163423.C.g.b.h	ENSGT01030000235214.f	ENSGT00530000063779.A.e.b.a
Goldfish	MODERN SPECIES	24	zswim2 (ENSCARG00000035294)	CALCRL (ENSCARG00000035311)	GULP1 (ENSCARG00000035354)	ENSCARG00000035363	ENSCARG00000005837 ##14	ENSCARG00000005853	pcnt (ENSCARG00000005921)	atg9a (ENSCARG00000006247)	ENSCARG00000006674	pttg1ipa (ENSCARG00000011323)	ENSCARG00000011330	ENSCARG00000011374	coq7 (ENSCARG00000011627)	ccr7 (ENSCARG00000011694)	cycsb (ENSCARG00000011705)	nfe2l2b (ENSCARG00000011714) #22	mtx2 (ENSCARG00000011733) #24	lnpk (ENSCARG00000011769) #32	atp5mc3b (ENSCARG00000011794)	chrna1 (ENSCARG00000011844)	ENSCARG00000012343	ENSCARG00000012348	GPR155 (ENSCARG00000012365)	ENSCARG00000012479	SP3 (ENSCARG00000012556)	ENSCARG00000012561	KCNH7 (ENSCARG00000012572)	ENSCARG00000012609	scn1lab (ENSCARG00000012923)	ENSCARG00000023279	XIRP2 (ENSCARG00000023297)
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00940000156186.l.a.a.b	ENSGT00940000168325.a	ENSGT00950000183140.a.a.b ##14	ENSGT00940000155489.a.b	ENSGT00940000174917	ENSGT00730000110871.a.a.a.b.e	ENSGT00390000014839.b.g	ENSGT00940000164909.e.b.a	ENSGT00940000168354.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a.a	ENSGT00390000014520.n.b	ENSGT00940000165776.h	ENSGT01030000234667.a.a.a.a.b.d	ENSGT00940000157883.a.b.f.c.a	ENSGT00950000182892.a.a.b.e.a #22	ENSGT00950000182919.C.m #24	ENSGT00390000001859.f.b.a #32	ENSGT00940000157981.a.a.a.c.b	ENSGT00940000156851.d.c.b	ENSGT00910000144296.d	ENSGT00390000004153.d.i	ENSGT00390000000673.a.b.f	ENSGT00390000000673.a.b.e.b	ENSGT00940000155099.k.b.d	ENSGT00940000154076.B.b.i	ENSGT00940000155518.n.b	ENSGT00530000063608.B.b.a	ENSGT00940000163423.C.g.b.h	ENSGT01030000235214.f	ENSGT00530000063779.A.e.b.a
Common carp reference	MODERN SPECIES	16	GULP1 (ENSCCRG00000027127)	ENSCCRG00000076943	ENSCCRG00000008347 ##14	ENSCCRG00000016466	ENSCCRG00000000184	pcnt (ENSCCRG00000000384)	atg9a (ENSCCRG00000000503)	ENSCCRG00000040506	pttg1ipa (ENSCCRG00000013616)	ENSCCRG00000013601	ENSCCRG00000057193	coq7 (ENSCCRG00000071693)	notum2 (ENSCCRG00000002035)	ccr7 (ENSCCRG00000002028)	cycsb (ENSCCRG00000060152)	nfe2l2b (ENSCCRG00000002018) #22	mtx2 (ENSCCRG00000062543) #24	ENSCCRG00000067586	lnpk (ENSCCRG00000051273) #32	chrna1 (ENSCCRG00000080784)	ENSCCRG00000064998	GPR155 (ENSCCRG00000051004)	ENSCCRG00000051001	ENSCCRG00000050997	ENSCCRG00000082658	ENSCCRG00000022016	ENSCCRG00000050305	scn1lab (ENSCCRG00000048804)	ENSCCRG00000059510	ENSCCRG00000057743	ENSCCRG00000069681
Golden-line barbel	MODERN SPECIES	62	zswim2 (ENSSGRG00000026614)	CALCRL (ENSSGRG00000026622)	ENSSGRG00000027498 ##14	ENSSGRG00000027499	ENSSGRG00000027502	pcnt (ENSSGRG00000027504)	ATG9A (ENSSGRG00000027509)	ENSSGRG00000027515	pttg1ipa (ENSSGRG00000027520)	ENSSGRG00000027521	ENSSGRG00000027600	coq7 (ENSSGRG00000028458)	notum2 (ENSSGRG00000028459)	ccr7 (ENSSGRG00000028460)	cycsb (ENSSGRG00000028463)	nfe2l2b (ENSSGRG00000028481) #22	mtx2 (ENSSGRG00000028486) #24	ENSSGRG00000028581 #32	atp5mc3b (ENSSGRG00000028582)	chrna1 (ENSSGRG00000028593)	GPR155 (ENSSGRG00000028597)	ENSSGRG00000028625	ENSSGRG00000028684	ENSSGRG00000028685	ENSSGRG00000028688	ENSSGRG00000028689	scn1lab (ENSSGRG00000028690)	ENSSGRG00000028692	ENSSGRG00000028693	ENSSGRG00000028694	B3GALT1 (ENSSGRG00000028695)
Cyprininae	ANCESTRAL SPECIES	23	ENSGT00940000156186.l.a.a.a	ENSGT00940000168325.b	ENSGT00950000183140.a.a.a ##14	ENSGT00940000155489.a.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b.f	ENSGT00390000014839.b.h	ENSGT00940000164909.e.b.b	ENSGT00940000168354.d.a	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a.b	ENSGT00390000014520.n.a	ENSGT00940000165776.g	ENSGT01030000234667.a.a.a.a.b.c	ENSGT00940000157883.a.b.f.c.b	ENSGT00950000182892.a.a.b.e.b #22	ENSGT00950000182919.C.n #24	ENSGT00390000001859.f.b.b.a #32	ENSGT00940000157981.a.a.a.c.a	ENSGT00940000156851.d.c.a	ENSGT00940000155557.kc	ENSGT00390000004153.d.j	ENSGT00390000000673.a.b.e.a	ENSGT00940000155099.k.b.c	ENSGT00940000154076.B.b.j	ENSGT00940000155518.n.a	ENSGT00530000063608.B.b.b	ENSGT01030000235214.e	ENSGT00940000163423.C.g.b.g	ENSGT00530000063779.A.e.b.b	ENSGT00940000156219.e.b.c
Cyprininae_a	ANCESTRAL SPECIES	30	ENSGT00940000165235.a.a	ENSGT00940000156186.l.a.a.a	ENSGT00940000168325.b	ENSGT00950000183140.a.a.a ##14	ENSGT00940000155489.a.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b.f	ENSGT00390000014839.b.h	ENSGT00940000164909.e.b.b	ENSGT00940000168354.d.a	ENSGT00940000165591.a.b	ENSGT00390000014520.n.a	ENSGT00940000165776.g	ENSGT01030000234667.a.a.a.a.b.c	ENSGT00940000157883.a.b.f.c.b	ENSGT00950000182892.a.a.b.e.b #22	ENSGT00950000182919.C.n #24	ENSGT00390000001859.f.b.b.a #32	ENSGT00940000157981.a.a.a.c.a	ENSGT00940000156851.d.c.a	ENSGT00940000155557.kc	ENSGT00390000004153.d.j	ENSGT00390000000673.a.b.e.a	ENSGT00940000155099.k.b.c	ENSGT00940000154076.B.b.j	ENSGT00940000155518.n.a	ENSGT00530000063608.B.b.b	ENSGT01030000235214.e	ENSGT00940000163423.C.g.b.g	ENSGT00530000063779.A.e.b.b	ENSGT00940000156219.e.b.c
Common carp reference	MODERN SPECIES	10	ENSCCRG00000023287	ENSCCRG00000055344	ENSCCRG00000016478 ##14	ENSCCRG00000000163	zgc:112416 (ENSCCRG00000016454)	pcnt (ENSCCRG00000015629)	ENSCCRG00000040433	ENSCCRG00000000883	pttg1ipa (ENSCCRG00000071392)	ENSCCRG00000035140	coq7 (ENSCCRG00000070280)	notum2 (ENSCCRG00000002071)	ccr7 (ENSCCRG00000075598)	ENSCCRG00000068634	cycsb (ENSCCRG00000069700)	nfe2l2b (ENSCCRG00000061753) #22	mtx2 (ENSCCRG00000001882) #24	lnpk (ENSCCRG00000002052) #32	atp5mc3b (ENSCCRG00000051371)	chrna1 (ENSCCRG00000051031)	ENSCCRG00000066489	ENSCCRG00000063811	ENSCCRG00000067910	ENSCCRG00000051291	ENSCCRG00000060693	ENSCCRG00000050277	scn1lab (ENSCCRG00000001776)	ENSCCRG00000001805	ENSCCRG00000055892	ENSCCRG00000078893	ENSCCRG00000001852
Goldfish	MODERN SPECIES	46	ENSCARG00000015670	ENSCARG00000015690	ENSCARG00000015660 ##14	ENSCARG00000015646	zgc:112416 (ENSCARG00000015634)	pcnt (ENSCARG00000015475)	ATG9A (ENSCARG00000015429)	ENSCARG00000014750	pttg1ipa (ENSCARG00000014714)	ENSCARG00000014705	ENSCARG00000014633	coq7 (ENSCARG00000014608)	notum2 (ENSCARG00000014585)	ccr7 (ENSCARG00000014577)	cycsb (ENSCARG00000014575)	nfe2l2b (ENSCARG00000014572) #22	mtx2 (ENSCARG00000014514) #24	lnpk (ENSCARG00000014454) #32	atp5mc3b (ENSCARG00000014409)	chrna1 (ENSCARG00000013628)	ENSCARG00000013590	OLA1 (ENSCARG00000013532)	ENSCARG00000013514	ENSCARG00000013504	ENSCARG00000011675	ENSCARG00000011530	ENSCARG00000011490	ENSCARG00000011479	scn1lab (ENSCARG00000010628)	XIRP2 (ENSCARG00000010528)	ATP7B (ENSCARG00000003423)
Zebrafish	MODERN SPECIES	21	ENSDARG00000024847	ENSDARG00000079945 ##14	ENSDARG00000073837	zgc:112416 (ENSDARG00000044549)	pcnt (ENSDARG00000033012)	atg9a (ENSDARG00000044551)	ENSDARG00000074723	pttg1ipa (ENSDARG00000090156)	sumo3a (ENSDARG00000028119)	ENSDARG00000016750	coq7 (ENSDARG00000062594)	notum2 (ENSDARG00000088411)	ccr7 (ENSDARG00000044561)	cycsb (ENSDARG00000044562)	ENSDARG00000096239	nfe2l2b (ENSDARG00000089697) #22	mtx2 (ENSDARG00000029415) #24	lnpk (ENSDARG00000006639) #32	atp5mc3b (ENSDARG00000009447)	chrna1 (ENSDARG00000009021)	ENSDARG00000071084	GPR155 (ENSDARG00000071086)	ola1 (ENSDARG00000044565)	SP3 (ENSDARG00000007812)	ENSDARG00000078814	ENSDARG00000062630	ENSDARG00000062687	ENSDARG00000089858	scn1lab (ENSDARG00000062744)	XIRP2 (ENSDARG00000071113)	B3GALT1 (ENSDARG00000079700)
Characiphysae	ANCESTRAL SPECIES	18	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a ##14	ENSGT00940000155489.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d	ENSGT00390000004153.d	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00940000154076.B.b	ENSGT00940000155518.n	ENSGT00940000157526.b	ENSGT00530000063608.B.b	ENSGT01030000235214	ENSGT00940000163423.C.g.b	ENSGT00530000063779.A.e.b
Characiphysae_b	ANCESTRAL SPECIES	127	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a ##14	ENSGT00940000155489.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00910000144296.d	ENSGT00390000004153.d	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00940000154076.B.b	ENSGT00940000155518.n	ENSGT00940000157526.b
Characoidei	ANCESTRAL SPECIES	124	ENSGT00940000155675.p.b	ENSGT00940000168325	ENSGT00950000183140.a.a ##14	ENSGT00940000155489.a	ENSGT00390000011514	ENSGT00730000110871.a.a.a.b	ENSGT00390000014839.b	ENSGT00940000164909.e.b	ENSGT00390000004977.d.b	ENSGT00950000182895.a.b.u.b	ENSGT00940000165591.a	ENSGT00390000014520.n	ENSGT00940000165776	ENSGT01030000234667.a.a.a.a.b	ENSGT00940000157883.a.b.f	ENSGT00950000182892.a.a.b.e #22	ENSGT00950000182919.C #24	ENSGT00390000001859.f #32	ENSGT00940000157981.a.a.a	ENSGT00940000156851.d.c	ENSGT00940000155557.kc	ENSGT00390000004153.d.g	ENSGT00390000000673.a.b	ENSGT00940000155099.k.b	ENSGT00940000154076.B.b	ENSGT00940000155518.n	ENSGT00940000157526.b
Mexicana tetra	MODERN SPECIES	155										sumo3a (ENSAMXG00000037441)	ENSAMXG00000004837	coq7 (ENSAMXG00000004846)	notum2 (ENSAMXG00000004857)	ccr7 (ENSAMXG00000031087)	cycsb (ENSAMXG00000041744)	nfe2l2b (ENSAMXG00000035783) #22	mtx2 (ENSAMXG00000004894) #24	lnpk (ENSAMXG00000043426) #32	atp5mc3b (ENSAMXG00000031866)	chrna1 (ENSAMXG00000042936)	ENSAMXG00000031617	ENSAMXG00000041604	GPR155 (ENSAMXG00000004910)	ENSAMXG00000033114	ola1 (ENSAMXG00000004913)	SP3 (ENSAMXG00000037933)	ENSAMXG00000004937	ENSAMXG00000004957
Red-bellied piranha	MODERN SPECIES	93	SEMA5B (ENSPNAG00000002901)	unc50 (ENSPNAG00000002873)	slc25a12 (ENSPNAG00000002858)	ENSPNAG00000002847	zgc:112416 (ENSPNAG00000013594)	pcnt (ENSPNAG00000002811)	atg9a (ENSPNAG00000002672)	ENSPNAG00000013229	ENSPNAG00000013064	sumo3b (ENSPNAG00000013056)	ENSPNAG00000013036	coq7 (ENSPNAG00000002452)	notum2 (ENSPNAG00000005408)	ccr7 (ENSPNAG00000002437)	cycsb (ENSPNAG00000012874)	nfe2l2b (ENSPNAG00000002430) #22	mtx2 (ENSPNAG00000012847) #24	lnpk (ENSPNAG00000012789) #32	atp5mc3b (ENSPNAG00000002387)	chrna1 (ENSPNAG00000002374)	ENSPNAG00000012709	GPR155 (ENSPNAG00000012683)	ola1 (ENSPNAG00000012638)	ENSPNAG00000002316	ENSPNAG00000012566	KCNH7 (ENSPNAG00000012378)	ENSPNAG00000002201
Electric eel	MODERN SPECIES	314	ENSEEEG00000021991	GULP1 (ENSEEEG00000021990)	ENSEEEG00000021989	ENSEEEG00000021988 ##14	ENSEEEG00000021987	atg9a (ENSEEEG00000021984)	ENSEEEG00000021983	ENSEEEG00000021981	ENSEEEG00000021978	SUMO3 (ENSEEEG00000021954)	ENSEEEG00000021936	coq7 (ENSEEEG00000021928)	notum2 (ENSEEEG00000021925)	ccr7 (ENSEEEG00000021923)	cycsb (ENSEEEG00000021918)	ENSEEEG00000021917 #22	mtx2 (ENSEEEG00000021916) #24	lnpk (ENSEEEG00000021914) #32	atp5mc3b (ENSEEEG00000021912)	chrna1 (ENSEEEG00000021911)	WIPF1 (ENSEEEG00000021910)	GPR155 (ENSEEEG00000021909)	ola1 (ENSEEEG00000021904)	ENSEEEG00000021898	ENSEEEG00000021897	ENSEEEG00000021895	ENSEEEG00000021886	ENSEEEG00000021872	ENSEEEG00000021871
Otomorpha	ANCESTRAL SPECIES	11	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974.g	ENSGT00940000153514.b.n	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781.e	ENSGT00390000015769.B	ENSGT00940000160994.g	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.f #22	ENSGT00940000154808.a.a	ENSGT00940000159503	ENSGT00940000158354.c.a	ENSGT00940000165065.b	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35
Otophysi	ANCESTRAL SPECIES	103	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.p	ENSGT00940000153476.b.o.a	ENSGT00940000157974.g	ENSGT00940000153514.b.n	ENSGT00940000160642	ENSGT00940000158781.e	ENSGT00390000015769.B	ENSGT00940000160994.g	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.f #22	ENSGT00940000154808.a.a	ENSGT00940000157315.jc.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.a ##36	ENSGT00940000156851.d.d
Characiphysae	ANCESTRAL SPECIES	3	ENSGT00940000176946	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974.g	ENSGT00940000153514.b.n	ENSGT00940000160642	ENSGT00940000158781.e	ENSGT00390000015769.B	ENSGT00940000160994.g	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.f #22	ENSGT00940000154808.a.a	ENSGT00940000157315.jc.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.a ##36	ENSGT00940000156851.d.d
Channel catfish	MODERN SPECIES	25	RAP2A (ENSIPUG00000018801)	farp1 (ENSIPUG00000018812)	DOCK9 (ENSIPUG00000018881)	SLC15A1 (ENSIPUG00000019129)	stk24 (ENSIPUG00000019188)	INO80D (ENSIPUG00000019234)	gpr1 (ENSIPUG00000019259)	ADAM23 (ENSIPUG00000019278)	FAM237A (ENSIPUG00000019343)	ENSIPUG00000019355	prkra (ENSIPUG00000019396) #15	osbpl6 (ENSIPUG00000019425) #16	RBM45 (ENSIPUG00000019576) #17	pde11a (ENSIPUG00000019607)	AGPS (ENSIPUG00000019647) #21	nfe2l2 (ENSIPUG00000019775) #22	RO32 (ENSIPUG00000019815)	ENSIPUG00000019858	hoxd3 (ENSIPUG00000019869)	hoxd4 (ENSIPUG00000019877)	hoxd9 (ENSIPUG00000019882)	hoxd10a (ENSIPUG00000019897) #27	hoxd11a (ENSIPUG00000019900) #28	hoxd12a (ENSIPUG00000019903) #29	HOXD13 (ENSIPUG00000019917) #30	evx2 (ENSIPUG00000019922) #31	kiaa1715 (ENSIPUG00000019939) #32	AT5G3 (ENSIPUG00000019955)	atf2 (ENSIPUG00000019996) #35	chn1 (ENSIPUG00000020028) ##36	CHRNA1 (ENSIPUG00000020045)
Characiphysae_b	ANCESTRAL SPECIES	11	ENSGT00940000176946	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974.g	ENSGT00940000153514.b.n	ENSGT00940000160642	ENSGT00940000158781.e	ENSGT00390000015769.B	ENSGT00940000160994.g	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.f #22	ENSGT00940000154808.a.a	ENSGT00940000157315.jc.a	ENSGT00940000159503	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.a ##36
Characoidei	ANCESTRAL SPECIES	1	ENSGT00940000176946.d	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974.g	ENSGT00940000153514.b.n	ENSGT00940000160642	ENSGT00940000158781.e	ENSGT00390000015769.B	ENSGT00940000160994.g	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.f #22	ENSGT00940000153147.b #23	ENSGT00940000154808.a.a	ENSGT00940000157315.jc.a	ENSGT00940000159503	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35
Red-bellied piranha	MODERN SPECIES	22	ENSPNAG00000022529	DOCK9 (ENSPNAG00000022518)	SLC15A1 (ENSPNAG00000022342)	STK24 (ENSPNAG00000022309)	INO80D (ENSPNAG00000022253)	NDUFS1 (ENSPNAG00000022179)	CMKLR2 (ENSPNAG00000022110)	ADAM23 (ENSPNAG00000022084)	FAM237A (ENSPNAG00000022022)	ENSPNAG00000022008	prkra (ENSPNAG00000021962) #15	OSBPL6 (ENSPNAG00000021928) #16	rbm45 (ENSPNAG00000021750) #17	ENSPNAG00000021682	agps (ENSPNAG00000021615) #21	nfe2l2a (ENSPNAG00000021429) #22	HNRNPA3 (ENSPNAG00000021384) #23	ENSPNAG00000003677	hoxd3a (ENSPNAG00000021306)	hoxd4a (ENSPNAG00000021286)	hoxd9a (ENSPNAG00000021281)	hoxd10a (ENSPNAG00000021276) #27	hoxd11a (ENSPNAG00000021265) #28	hoxd12a (ENSPNAG00000003676) #29	HOXD13 (ENSPNAG00000021245) #30	evx2 (ENSPNAG00000021237) #31	lnpa (ENSPNAG00000021198) #32	ENSPNAG00000021145	ATF2 (ENSPNAG00000021135) #35	ENSPNAG00000006188	chn1 (ENSPNAG00000021005) ##36
Mexicana tetra	MODERN SPECIES	10	DOCK9 (ENSAMXG00000009010)	SLC15A1 (ENSAMXG00000008443)	STK24 (ENSAMXG00000008289)	INO80D (ENSAMXG00000008221)	NDUFS1 (ENSAMXG00000008169)	ENSAMXG00000034457	CMKLR2 (ENSAMXG00000025165)	ADAM23 (ENSAMXG00000007893)	FAM237A (ENSAMXG00000039636)	ENSAMXG00000007768	prkra (ENSAMXG00000034602) #15	OSBPL6 (ENSAMXG00000007557) #16	rbm45 (ENSAMXG00000007463) #17	ENSAMXG00000007277	agps (ENSAMXG00000007175) #21	nfe2l2a (ENSAMXG00000007122) #22	hnrnpa3 (ENSAMXG00000007065)	ENSAMXG00000033411	hoxd3a (ENSAMXG00000007001)	hoxd4a (ENSAMXG00000007015)	hoxd9a (ENSAMXG00000040540)	hoxd10a (ENSAMXG00000006948) #27	hoxd11a (ENSAMXG00000006918) #28	hoxd12a (ENSAMXG00000006895) #29	HOXD13 (ENSAMXG00000033966) #30	evx2 (ENSAMXG00000042739) #31	lnpa (ENSAMXG00000006653) #32	ENSAMXG00000042778	ATF2 (ENSAMXG00000034168) #35	ENSAMXG00000032309	chn1 (ENSAMXG00000043182) ##36
Electric eel	MODERN SPECIES	297						INO80D (ENSEEEG00000011260)	CMKLR2 (ENSEEEG00000011258)	ADAM23 (ENSEEEG00000011255)	FAM237A (ENSEEEG00000011251)	ENSEEEG00000011250	prkra (ENSEEEG00000011243) #15	OSBPL6 (ENSEEEG00000011202) #16	rbm45 (ENSEEEG00000011198) #17	ENSEEEG00000011195	agps (ENSEEEG00000010447) #21	nfe2l2a (ENSEEEG00000010397) #22	hnrnpa3 (ENSEEEG00000010394)	ENSEEEG00000010393	hoxd3a (ENSEEEG00000010392)	hoxd4a (ENSEEEG00000010390)	hoxd9a (ENSEEEG00000010389)	hoxd10a (ENSEEEG00000010388) #27	hoxd11a (ENSEEEG00000010387) #28	hoxd12a (ENSEEEG00000010386) #29	HOXD13 (ENSEEEG00000010381) #30	evx2 (ENSEEEG00000010377) #31	lnpa (ENSEEEG00000010371) #32	ENSEEEG00000010367	ATF2 (ENSEEEG00000010355) #35
Cyprinoidei	ANCESTRAL SPECIES	81	ENSGT00950000182897.B.a.b.b.a	ENSGT00940000160594.g.b.a	ENSGT00940000155318.b.a.f	ENSGT00940000155995.e.b.a	ENSGT00940000153476.b.p	ENSGT00940000157974.g	ENSGT00940000160642.z	ENSGT00940000158781.e	ENSGT00940000160994.g	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164822.a.b	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.f #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308.a #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000164071.a	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582.p #35	ENSGT00940000154298.b.b ##34	ENSGT00940000156582.o #35
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	210	ENSGT00940000160594.g.b.a.b	ENSGT00940000155318.b.a.e.b	ENSGT00940000155972.B.r	ENSGT00940000155995.e.b.b	ENSGT00940000153476.b.p.a	ENSGT00940000157974.g.a	ENSGT00940000160642.z.a	ENSGT00940000158781.e	ENSGT00940000160994.g.a	ENSGT00940000157618.v #15	ENSGT00940000156791.e.a #16	ENSGT00680000100059.k #17	ENSGT00940000164822.a.b	ENSGT00940000164264.a	ENSGT00940000156112.a #21	ENSGT00950000182892.a.a.b.f.a #22	ENSGT00940000156112.b #21	ENSGT00950000182892.a.a.b.f.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a.b	ENSGT00940000158266 #27	ENSGT00940000161308.a.a #28	ENSGT00940000159938.d #29	ENSGT00940000161457 #30	ENSGT00390000001859.e.a #32	ENSGT00940000154298.b.b ##34	ENSGT00940000156582.o.a #35	ENSGT01030000234635.a.b.a.b.a.a.b ##36	ENSGT00910000144296.c.a
Goldfish	MODERN SPECIES	27	ENSCARG00000006803	actr5 (ENSCARG00000006789)	BIN1 (ENSCARG00000006506)	TMEM198 (ENSCARG00000006445)	desma (ENSCARG00000006241)	ptprna (ENSCARG00000006003)	dnajb2 (ENSCARG00000005970)	ENSCARG00000005941	mnx2a (ENSCARG00000005928)	ENSCARG00000005908	ENSCARG00000005901	fn1a (ENSCARG00000048869)	ENSCARG00000048763	ENSCARG00000048751	agps (ENSCARG00000047643) #21	nfe2l2a (ENSCARG00000047560) #22	ENSCARG00000047543	hoxd4a (ENSCARG00000047527)	hoxd3a (ENSCARG00000047509)	hoxd9a (ENSCARG00000047500)	hoxd10a (ENSCARG00000047486) #27	hoxd11a (ENSCARG00000047476) #28	hoxd12a (ENSCARG00000047459) #29	evx2 (ENSCARG00000047437) #31	lnpa (ENSCARG00000047330) #32	atp5mc3a (ENSCARG00000047231) ##34	ATF2 (ENSCARG00000046955) #35	chn1 (ENSCARG00000045752) ##36	wipf1a (ENSCARG00000045706)	GPR155 (ENSCARG00000043338)	scrn3 (ENSCARG00000043106)
Cyprininae_a	ANCESTRAL SPECIES	222	ENSGT00940000160594.g.b.a.b	ENSGT00940000155318.b.a.e.b	ENSGT00940000155972.B.r	ENSGT00940000155995.e.b.b	ENSGT00940000153476.b.p.a	ENSGT00940000157974.g.a	ENSGT00940000160642.z.a	ENSGT00940000158781.e	ENSGT00940000160994.g.a	ENSGT00940000157618.v #15	ENSGT00940000156791.e.a #16	ENSGT00940000164822.a.b	ENSGT00950000182996.b.a.b.c	ENSGT00940000164264.a	ENSGT00940000156112.a #21	ENSGT00950000182892.a.a.b.f.a #22	ENSGT00940000156112.b #21	ENSGT00950000182892.a.a.b.f.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a.b	ENSGT00940000161503.a.a	ENSGT00940000158266 #27	ENSGT00940000161308.a.a #28	ENSGT00940000159938.d #29	ENSGT00940000161457 #30	ENSGT00940000164071.a.b	ENSGT00940000161025 #31	ENSGT00390000001859.e.b #32	ENSGT00940000157981.a.a.b
Common carp reference	MODERN SPECIES	41	ENSCCRG00000025500	MBNL2 (ENSCCRG00000081713)	ENSCCRG00000069918	FARP1 (ENSCCRG00000055774)	ENSCCRG00000001851	ENSCCRG00000037470	stk24a (ENSCCRG00000041086)	ENSCCRG00000038100	ENSCCRG00000066291	ENSCCRG00000080178	ENSCCRG00000015193	prkra (ENSCCRG00000015185) #15	ENSCCRG00000045287 #16	rbm45 (ENSCCRG00000024120) #17	ENSCCRG00000064769	nfe2l2a (ENSCCRG00000048803) #22	AGPS (ENSCCRG00000015291) #21	hoxd3a (ENSCCRG00000002183)	hoxd9a (ENSCCRG00000044522)	hoxd10a (ENSCCRG00000055507) #27	hoxd11a (ENSCCRG00000044502) #28	hoxd12a (ENSCCRG00000044499) #29	hoxd13a (ENSCCRG00000044492)	evx2 (ENSCCRG00000074291) #31	lnpa (ENSCCRG00000040872) #32	atp5mc3a (ENSCCRG00000076700) ##34	ATF2 (ENSCCRG00000074915) #35	chn1 (ENSCCRG00000035748) ##36	wipf1a (ENSCCRG00000053670)	GPR155 (ENSCCRG00000012886)	scrn3 (ENSCCRG00000065357)
Golden-line barbel	MODERN SPECIES	4043																nfe2l2a (ENSSGRG00000005241) #22
Cyprininae	ANCESTRAL SPECIES	210	ENSGT00940000155972.B.r	ENSGT00940000155995.e.b.b	ENSGT00940000153476.b.p.a	ENSGT00940000157974.g.a	ENSGT00940000160642.z.a	ENSGT00940000158781.e	ENSGT00940000160994.g.a	ENSGT00940000157618.v #15	ENSGT00940000156791.e.a #16	ENSGT00680000100059.k #17	ENSGT00940000164822.a.b	ENSGT00940000164264.a	ENSGT00940000156112.a #21	ENSGT00950000182892.a.a.b.f.a #22	ENSGT00940000156112.b #21	ENSGT00950000182892.a.a.b.f.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a.b	ENSGT00940000158266 #27	ENSGT00940000161308.a.a #28	ENSGT00940000159938.d #29	ENSGT00940000161457 #30	ENSGT00390000001859.e.a #32	ENSGT00940000154298.b.b ##34	ENSGT00940000156582.o.a #35	ENSGT01030000234635.a.b.a.b.a.a.b ##36	ENSGT00910000144296.c.a	ENSGT00390000004153.c.a	ENSGT00390000013474.a.k
Goldfish	MODERN SPECIES	49	ENSCARG00000040649	ENSCARG00000040659	DIP2A (ENSCARG00000041000)	ENSCARG00000052363	ndufb3 (ENSCARG00000052374)	ybey (ENSCARG00000052393)	usp37 (ENSCARG00000052424)	insig2 (ENSCARG00000052545)	en1a (ENSCARG00000052604)	ENSCARG00000052618	C1QL2 (ENSCARG00000052630)	ENSCARG00000052695	ENSCARG00000052770	ENSCARG00000052801	agps (ENSCARG00000052897) #21	nfe2l2a (ENSCARG00000053298) #22	hnrnpa3 (ENSCARG00000053330)	hoxd3a (ENSCARG00000053452)	hoxd4a (ENSCARG00000053463)	hoxd9a (ENSCARG00000053478)	hoxd10a (ENSCARG00000053495) #27	hoxd11a (ENSCARG00000053512) #28	hoxd12a (ENSCARG00000053524) #29	evx2 (ENSCARG00000053531) #31	lnpa (ENSCARG00000053555) #32	ENSCARG00000053591	ATF2 (ENSCARG00000053707) #35	chn1 (ENSCARG00000053986) ##36	wipf1a (ENSCARG00000054142)	GPR155 (ENSCARG00000054194)	scrn3 (ENSCARG00000054593)
Cyprininae_a	ANCESTRAL SPECIES	222	ENSGT00940000155972.B.r	ENSGT00940000155995.e.b.b	ENSGT00940000153476.b.p.a	ENSGT00940000157974.g.a	ENSGT00940000160642.z.a	ENSGT00940000158781.e	ENSGT00940000160994.g.a	ENSGT00940000157618.v #15	ENSGT00940000156791.e.a #16	ENSGT00940000164822.a.b	ENSGT00950000182996.b.a.b.c	ENSGT00940000164264.a	ENSGT00940000156112.a #21	ENSGT00950000182892.a.a.b.f.a #22	ENSGT00940000156112.b #21	ENSGT00950000182892.a.a.b.f.b #22	ENSGT00940000154808.a.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a.b	ENSGT00940000161503.a.a	ENSGT00940000158266 #27	ENSGT00940000161308.a.a #28	ENSGT00940000159938.d #29	ENSGT00940000161457 #30	ENSGT00940000164071.a.b	ENSGT00940000161025 #31	ENSGT00390000001859.e.b #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582.p #35	ENSGT00940000156582.o.b #35
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	289	clpxa (ENSSGRG00000040293)	spg21 (ENSSGRG00000040243)	ankdd1a (ENSSGRG00000040237)	ENSSGRG00000040236	arih1l (ENSSGRG00000039841)	DAGLA (ENSSGRG00000039642)	polr2l (ENSSGRG00000039637)	ENSSGRG00000039634	ENSSGRG00000039632	syt7b (ENSSGRG00000039630)	ENSSGRG00000039628	ENSSGRG00000039625	ENSSGRG00000039624	ENSSGRG00000039623	agps (ENSSGRG00000039571) #21	nfe2l2a (ENSSGRG00000039415) #22	hnrnpa3 (ENSSGRG00000039410)	hoxd3a (ENSSGRG00000039408)	hoxd4a (ENSSGRG00000039405)	hoxd9a (ENSSGRG00000039404)	ENSSGRG00000039402	hoxd11a (ENSSGRG00000039401) #28	hoxd12a (ENSSGRG00000039400) #29	hoxd13a (ENSSGRG00000039398)	lnpa (ENSSGRG00000039397) #32	ENSSGRG00000039396	ENSSGRG00000039395 #35	ATF2 (ENSSGRG00000039394) #35	chn1 (ENSSGRG00000039383) ##36	wipf1a (ENSSGRG00000039382)	GPR155 (ENSSGRG00000039376)
Golden-line barbel	MODERN SPECIES	1630																ENSSGRG00000002097 #22
Common carp reference	MODERN SPECIES	46	ENSCCRG00000058585	ENSCCRG00000058436	ENSCCRG00000074650	ENSCCRG00000025797	prkra (ENSCCRG00000025780) #15	ENSCCRG00000060246 #16	ENSCCRG00000055137	ENSCCRG00000070952	ENSCCRG00000074554	rbm45 (ENSCCRG00000007014) #17	ENSCCRG00000037767	ENSCCRG00000015043	ENSCCRG00000082895	ENSCCRG00000020753	agps (ENSCCRG00000025723) #21	nfe2l2a (ENSCCRG00000048514) #22	hnrnpa3 (ENSCCRG00000048768)	hoxd3a (ENSCCRG00000056734)	hoxd9a (ENSCCRG00000071928)	hoxd10a (ENSCCRG00000002190) #27	hoxd11a (ENSCCRG00000061064) #28	hoxd12a (ENSCCRG00000074101) #29	hoxd13a (ENSCCRG00000002199)	evx2 (ENSCCRG00000044599) #31	lnpa (ENSCCRG00000036763) #32	atp5mc3a (ENSCCRG00000032743) ##34	ATF2 (ENSCCRG00000032757) #35	chn1 (ENSCCRG00000056937) ##36	wipf1a (ENSCCRG00000070448)	GPR155 (ENSCCRG00000063804)	scrn3 (ENSCCRG00000001811)
Zebrafish	MODERN SPECIES	24	ENSDARG00000077553	ENSDARG00000112056	DOCK9 (ENSDARG00000114086)	SLC15A1 (ENSDARG00000100315)	stk24a (ENSDARG00000100955)	INO80D (ENSDARG00000104727)	CMKLR2 (ENSDARG00000101366)	ENSDARG00000112453	ENSDARG00000070272	prkra (ENSDARG00000076718) #15	OSBPL6 (ENSDARG00000063730) #16	rbm45 (ENSDARG00000063731) #17	si:ch211-222f23.6 (ENSDARG00000042880)	ENSDARG00000063732	agps (ENSDARG00000042821) #21	nfe2l2a (ENSDARG00000042824) #22	hnrnpa3 (ENSDARG00000059351)	hoxd3a (ENSDARG00000059280)	hoxd4a (ENSDARG00000059276)	hoxd9a (ENSDARG00000059274)	hoxd10a (ENSDARG00000057859) #27	hoxd11a (ENSDARG00000059267) #28	hoxd12a (ENSDARG00000059263) #29	hoxd13a (ENSDARG00000059256)	evx2 (ENSDARG00000059255) #31	lnpa (ENSDARG00000115902) #32	ENSDARG00000063646 #32	atp5mc3a (ENSDARG00000017775) ##34	ATF2 (ENSDARG00000023903) #35	chn1 (ENSDARG00000101735) ##36	wipf1a (ENSDARG00000104300)
Clupeiformes	ANCESTRAL SPECIES	1	ENSGT00940000155318.b.a	ENSGT00940000155972.B	ENSGT00940000155995.e.b	ENSGT00940000153476.b.o.a	ENSGT00940000157974.g	ENSGT00940000153514.b.m.a	ENSGT00940000160642	ENSGT00940000158781.e	ENSGT00390000015769.B	ENSGT00940000160994.g	ENSGT00940000157618 #15	ENSGT00940000156791 #16	ENSGT00680000100059 #17	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b.f #22	ENSGT00940000154808.a.a	ENSGT00940000157315.jc.a	ENSGT00940000160027	ENSGT00940000157270	ENSGT00940000161503.a	ENSGT00940000158266 #27	ENSGT00940000161308 #28	ENSGT00940000159938 #29	ENSGT00940000161457 #30	ENSGT00940000161025 #31	ENSGT00390000001859.e #32	ENSGT00940000157981.a.a.b	ENSGT00940000156582 #35	ENSGT01030000234635.a.b.a.b.a ##36	ENSGT00940000156851.c
Denticle herring	MODERN SPECIES	19	DOCK9 (ENSDCDG00000016686)	SLC15A1 (ENSDCDG00000015624)	STK24 (ENSDCDG00000014239)	INO80D (ENSDCDG00000014074)	ENSDCDG00000014052	CMKLR2 (ENSDCDG00000035150)	ADAM23 (ENSDCDG00000035033)	FAM237A (ENSDCDG00000035003)	ENSDCDG00000035000	prkra (ENSDCDG00000034999) #15	OSBPL6 (ENSDCDG00000034715) #16	rbm45 (ENSDCDG00000034683) #17	ENSDCDG00000034677	agps (ENSDCDG00000034246) #21	ENSDCDG00000034193	nfe2l2a (ENSDCDG00000034191) #22	hnrnpa3 (ENSDCDG00000034186)	hoxb1b (ENSDCDG00000034179)	hoxd3a (ENSDCDG00000034175)	hoxd4a (ENSDCDG00000034170)	hoxd9a (ENSDCDG00000034167)	hoxd10a (ENSDCDG00000034164) #27	hoxd11a (ENSDCDG00000034163) #28	hoxd12a (ENSDCDG00000034161) #29	ENSDCDG00000034159	evx2 (ENSDCDG00000034157) #31	lnpa (ENSDCDG00000034155) #32	ENSDCDG00000034148	ATF2 (ENSDCDG00000034143) #35	chn1 (ENSDCDG00000034125) ##36	CHRNA1 (ENSDCDG00000034017)
Atlantic herring	MODERN SPECIES	11	DOCK9 (ENSCHAG00000020149)	SLC15A1 (ENSCHAG00000023630)	STK24 (ENSCHAG00000024093)	INO80D (ENSCHAG00000024111)	NDUFS1 (ENSCHAG00000024127)	CMKLR2 (ENSCHAG00000024325)	ADAM23 (ENSCHAG00000024337)	FAM237A (ENSCHAG00000024835)	ENSCHAG00000024839	prkra (ENSCHAG00000024870) #15	OSBPL6 (ENSCHAG00000024905) #16	rbm45 (ENSCHAG00000025773) #17	ENSCHAG00000025784	ENSCHAG00000025788	agps (ENSCHAG00000025841) #21	nfe2l2a (ENSCHAG00000026474) #22	hnrnpa3 (ENSCHAG00000026478)	ENSCHAG00000026496	hoxd3a (ENSCHAG00000026497)	hoxd4a (ENSCHAG00000026499)	hoxd9a (ENSCHAG00000026501)	hoxd10a (ENSCHAG00000026503) #27	hoxd11a (ENSCHAG00000026505) #28	hoxd12a (ENSCHAG00000026507) #29	HOXD13 (ENSCHAG00000026513) #30	evx2 (ENSCHAG00000026552) #31	lnpa (ENSCHAG00000026554) #32	atp5mc3a (ENSCHAG00000026561) ##34	ATF2 (ENSCHAG00000026576) #35	ENSCHAG00000026584	chn1 (ENSCHAG00000026589) ##36