Rodentia	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263523.A #7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Myomorpha	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT01100000263523.B ##7	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Muroidea	ANCESTRAL SPECIES	34	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT01100000263523.B ##7	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Cricetidae	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00900000143159	ENSGT01100000263523.B ##7	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001011105 #7	ENSCGRG00001011823 #8	ENSCGRG00001001535 #9	Plekha3 (ENSCGRG00001002827) #10	Fkbp7 (ENSCGRG00001004871) #11	Pjvk (ENSCGRG00001006219) #12	Prkra (ENSCGRG00001009200) #13	Osbpl6 (ENSCGRG00001002669) #14	Rbm45 (ENSCGRG00001005759) #15	Cyct (ENSCGRG00001008096) #16	Pde11a (ENSCGRG00001011422) #17	ENSCGRG00001003072 #18	Ttc30a1 (ENSCGRG00001000892) #19	Ttc30b (ENSCGRG00001002157) #20	Agps (ENSCGRG00001003863) #21	Nfe2l2 (ENSCGRG00001005715) #22	ENSCGRG00001008592 #23	ENSCGRG00001003235 #24	Mtx2 (ENSCGRG00001014247) #25	ENSCGRG00001014512 #26	Hoxd1 (ENSCGRG00001011572) #27	Hoxd3 (ENSCGRG00001011863) #28	Hoxd4 (ENSCGRG00001012360) #29	Hoxd8 (ENSCGRG00001013130) #30	Hoxd9 (ENSCGRG00001005991) #31	Hoxd10 (ENSCGRG00001008302) #32	Hoxd11 (ENSCGRG00001010386) #33	Hoxd12 (ENSCGRG00001000877) #34	Hoxd13 (ENSCGRG00001001661) #35	Evx2 (ENSCGRG00001003649) #36	ENSCGRG00001006802 #37
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000001413	ENSMAUG00000016510 #7	ENSMAUG00000018214 ##7	ENSMAUG00000018562	ENSMAUG00000019513 #8	ENSMAUG00000018786 #9	Plekha3 (ENSMAUG00000019341) #10	Fkbp7 (ENSMAUG00000016606) #11	Pjvk (ENSMAUG00000018018) #12	Prkra (ENSMAUG00000019631) #13	Osbpl6 (ENSMAUG00000018609) #14	Rbm45 (ENSMAUG00000016948) #15	Cyct (ENSMAUG00000016722) #16	Pde11a (ENSMAUG00000021257) #17	Agps (ENSMAUG00000017317) #21	Nfe2l2 (ENSMAUG00000017700) #22	ENSMAUG00000017462	Mtx2 (ENSMAUG00000017870) #25	Hoxd1 (ENSMAUG00000018401) #27	Hoxd3 (ENSMAUG00000018318) #28	Hoxd4 (ENSMAUG00000018545) #29	Hoxd8 (ENSMAUG00000018092) #30	Hoxd9 (ENSMAUG00000018538) #31	Hoxd10 (ENSMAUG00000016731) #32	ENSMAUG00000020249 #33	Hoxd12 (ENSMAUG00000018416) #34	Hoxd13 (ENSMAUG00000017185) #35	Evx2 (ENSMAUG00000020383) #36	Lnpk (ENSMAUG00000018821)	ENSMAUG00000020495	Atp5g3 (ENSMAUG00000017685)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00900000143154 #8	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Prairie vole	MODERN SPECIES	12	ENSMOCG00000017985 #8	ENSMOCG00000017796 ##7	ENSMOCG00000015811 #9	Plekha3 (ENSMOCG00000004146) #10	Fkbp7 (ENSMOCG00000008125) #11	Pjvk (ENSMOCG00000006830) #12	Prkra (ENSMOCG00000004548) #13	Osbpl6 (ENSMOCG00000017155) #14	Rbm45 (ENSMOCG00000017295) #15	Cyct (ENSMOCG00000021506) #16	Pde11a (ENSMOCG00000005959) #17	Ttc30a2 (ENSMOCG00000002802) ##20	ENSMOCG00000001098	Ttc30b (ENSMOCG00000001580) #20	Agps (ENSMOCG00000017476) #21	Nfe2l2 (ENSMOCG00000020760) #22	ENSMOCG00000019409 ##23	Mtx2 (ENSMOCG00000017110) #25	Hoxd1 (ENSMOCG00000014086) #27	Hoxd4 (ENSMOCG00000013646) #29	Hoxd3 (ENSMOCG00000022552) #28	Hoxd8 (ENSMOCG00000022746) #30	Hoxd9 (ENSMOCG00000005870) #31	Hoxd10 (ENSMOCG00000006052) #32	Hoxd11 (ENSMOCG00000019226) #33	Hoxd12 (ENSMOCG00000018953) #34	Hoxd13 (ENSMOCG00000014618) #35	Evx2 (ENSMOCG00000010466) #36	Lnpk (ENSMOCG00000022345)	ENSMOCG00000012786	Atf2 (ENSMOCG00000015301)
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000028754 ##9	ENSPEMG00000014359 #8	Ttn (ENSPEMG00000022085) #7	Plekha3 (ENSPEMG00000021541) #10	Fkbp7 (ENSPEMG00000011534) #11	Pjvk (ENSPEMG00000013970) #12	Prkra (ENSPEMG00000011967) #13	Osbpl6 (ENSPEMG00000010580) #14	Rbm45 (ENSPEMG00000002470) #15	Cyct (ENSPEMG00000028091) #16	Pde11a (ENSPEMG00000021597) #17	Ttc30a1 (ENSPEMG00000025624) #19	Ttc30b (ENSPEMG00000001902) #20	ENSPEMG00000023662	Agps (ENSPEMG00000010561) #21	Nfe2l2 (ENSPEMG00000023181) #22	Hnrnpa3 (ENSPEMG00000021885) #23	Mtx2 (ENSPEMG00000022093) #25	Hoxd1 (ENSPEMG00000021389) #27	Hoxd3 (ENSPEMG00000028862) #28	Hoxd4 (ENSPEMG00000024627) #29	ENSPEMG00000029322	ENSPEMG00000028623 #30	Hoxd9 (ENSPEMG00000006162) #31	Hoxd10 (ENSPEMG00000030445) #32	ENSPEMG00000018816 #33	Hoxd12 (ENSPEMG00000019240) #34	Hoxd13 (ENSPEMG00000022412) #35	Evx2 (ENSPEMG00000022145) #36	Lnpk (ENSPEMG00000017827)	ENSPEMG00000008662
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Mouse	MODERN SPECIES	11	Sestd1 (ENSMUSG00000042272)	Ccdc141 (ENSMUSG00000044033)	Ttn (ENSMUSG00000051747) #7	Plekha3 (ENSMUSG00000002733) #10	Fkbp7 (ENSMUSG00000002732) #11	Pjvk (ENSMUSG00000075267) #12	Prkra (ENSMUSG00000002731) #13	Osbpl6 (ENSMUSG00000042359) #14	Rbm45 (ENSMUSG00000042369) #15	Cyct (ENSMUSG00000056436) #16	Pde11a (ENSMUSG00000075270) #17	Ttc30a1 (ENSMUSG00000075271) #19	Ttc30a2 (ENSMUSG00000075272) ##20	Ttc30b (ENSMUSG00000075273) #20	Agps (ENSMUSG00000042410) #21	Nfe2l2 (ENSMUSG00000015839) #22	Hnrnpa3 (ENSMUSG00000059005) #23	Mtx2 (ENSMUSG00000027099) #25	Hoxd1 (ENSMUSG00000042448) #27	Hoxd4 (ENSMUSG00000101174) #29	Hoxd3 (ENSMUSG00000079277) #28	Hoxd8 (ENSMUSG00000027102) #30	Hoxd9 (ENSMUSG00000043342) #31	Hoxd10 (ENSMUSG00000050368) #32	Hoxd11 (ENSMUSG00000042499) #33	Hoxd12 (ENSMUSG00000001823) #34	Hoxd13 (ENSMUSG00000001819) #35	Evx2 (ENSMUSG00000001815) #36	Lnpk (ENSMUSG00000009207)	Atp5g3 (ENSMUSG00000018770)	Atf2 (ENSMUSG00000027104)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000153458.B.f.e	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #23	ENSGT00940000153147.m.b ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Steppe mouse	MODERN SPECIES	3326																Nfe2l2 (ENSMSIG00000005673) #22	ENSMSIG00000005709 #23	ENSMSIG00000005981	ENSMSIG00000006005	Mtx2 (ENSMSIG00000006053) #25	Hoxd1 (ENSMSIG00000006137) #27	Hoxd3 (ENSMSIG00000006158) #28	ENSMSIG00000006186 #29	Hoxd8 (ENSMSIG00000006283) #30	Hoxd9 (ENSMSIG00000006304) #31	Hoxd10 (ENSMSIG00000006313) #32	Hoxd11 (ENSMSIG00000006326) #33	Hoxd12 (ENSMSIG00000006333) #34	Hoxd13 (ENSMSIG00000006348) #35	Evx2 (ENSMSIG00000006361) #36	Lnpk (ENSMSIG00000006386)
spretus	MODERN SPECIES	11	Ube2e3 (MGP_SPRETEiJ_G0024618)	Zfp385b (MGP_SPRETEiJ_G0024616)	Sestd1 (MGP_SPRETEiJ_G0024615)	Ccdc141 (MGP_SPRETEiJ_G0024614)	Ttn (MGP_SPRETEiJ_G0024613) #7	Plekha3 (MGP_SPRETEiJ_G0024612) #10	Fkbp7 (MGP_SPRETEiJ_G0024611) #11	Pjvk (MGP_SPRETEiJ_G0024610) #12	Prkra (MGP_SPRETEiJ_G0024609) #13	Osbpl6 (MGP_SPRETEiJ_G0024608) #14	Rbm45 (MGP_SPRETEiJ_G0024607) #15	Cyct (MGP_SPRETEiJ_G0024606) #16	Pde11a (MGP_SPRETEiJ_G0024605) #17	MGP_SPRETEiJ_G0024604 ##20	Agps (MGP_SPRETEiJ_G0024603) #21	Nfe2l2 (MGP_SPRETEiJ_G0024602) #22	MGP_SPRETEiJ_G0024601 ##23	Mtx2 (MGP_SPRETEiJ_G0024600) #25	Hoxd1 (MGP_SPRETEiJ_G0024599) #27	MGP_SPRETEiJ_G0024598 #29	Hoxd4 (MGP_SPRETEiJ_G0024597) #29	Hoxd3 (MGP_SPRETEiJ_G0024596) #28	Hoxd8 (MGP_SPRETEiJ_G0024595) #30	Hoxd9 (MGP_SPRETEiJ_G0024594) #31	Hoxd10 (MGP_SPRETEiJ_G0024593) #32	Hoxd11 (MGP_SPRETEiJ_G0024592) #33	Hoxd12 (MGP_SPRETEiJ_G0024591) #34	Hoxd13 (MGP_SPRETEiJ_G0024590) #35	Evx2 (MGP_SPRETEiJ_G0024589) #36	Lnpk (MGP_SPRETEiJ_G0024588)	Atp5g3 (MGP_SPRETEiJ_G0024587)
Ryukyu mouse	MODERN SPECIES	11	Sestd1 (MGP_CAROLIEiJ_G0023694)	Ccdc141 (MGP_CAROLIEiJ_G0023693)	Ttn (MGP_CAROLIEiJ_G0023692) #7	Plekha3 (MGP_CAROLIEiJ_G0023691) #10	Fkbp7 (MGP_CAROLIEiJ_G0023690) #11	Pjvk (MGP_CAROLIEiJ_G0023689) #12	Prkra (MGP_CAROLIEiJ_G0023688) #13	Osbpl6 (MGP_CAROLIEiJ_G0023687) #14	Rbm45 (MGP_CAROLIEiJ_G0023686) #15	Cyct (MGP_CAROLIEiJ_G0023685) #16	MGP_CAROLIEiJ_G0023684	Pde11a (MGP_CAROLIEiJ_G0023683) #17	MGP_CAROLIEiJ_G0023682 #20	MGP_CAROLIEiJ_G0023681 #20	Agps (MGP_CAROLIEiJ_G0023680) #21	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #22	MGP_CAROLIEiJ_G0023678 #23	Mtx2 (MGP_CAROLIEiJ_G0023677) #25	Hoxd1 (MGP_CAROLIEiJ_G0023676) #27	MGP_CAROLIEiJ_G0023675 #29	Hoxd4 (MGP_CAROLIEiJ_G0023674) #29	Hoxd3 (MGP_CAROLIEiJ_G0023673) #28	Hoxd8 (MGP_CAROLIEiJ_G0023672) #30	Hoxd9 (MGP_CAROLIEiJ_G0023671) #31	Hoxd10 (MGP_CAROLIEiJ_G0023670) #32	Hoxd11 (MGP_CAROLIEiJ_G0023669) #33	Hoxd12 (MGP_CAROLIEiJ_G0023668) #34	Hoxd13 (MGP_CAROLIEiJ_G0023667) #35	Evx2 (MGP_CAROLIEiJ_G0023666) #36	Lnpk (MGP_CAROLIEiJ_G0023665)	Atp5g3 (MGP_CAROLIEiJ_G0023664)
Shrew mouse	MODERN SPECIES	16	Zfp385b (MGP_PahariEiJ_G0025146)	Sestd1 (MGP_PahariEiJ_G0025145)	Ccdc141 (MGP_PahariEiJ_G0025144)	MGP_PahariEiJ_G0025143 #7	Plekha3 (MGP_PahariEiJ_G0025142) #10	Fkbp7 (MGP_PahariEiJ_G0025141) #11	Pjvk (MGP_PahariEiJ_G0025140) #12	Prkra (MGP_PahariEiJ_G0025139) #13	Osbpl6 (MGP_PahariEiJ_G0025138) #14	Rbm45 (MGP_PahariEiJ_G0025137) #15	Cyct (MGP_PahariEiJ_G0025136) #16	Pde11a (MGP_PahariEiJ_G0025135) #17	MGP_PahariEiJ_G0025134 ##20	MGP_PahariEiJ_G0025133 ##20	MGP_PahariEiJ_G0025132 #21	Nfe2l2 (MGP_PahariEiJ_G0025131) #22	Hnrnpa3 (MGP_PahariEiJ_G0025130) #23	Mtx2 (MGP_PahariEiJ_G0025129) #25	Hoxd1 (MGP_PahariEiJ_G0025128) #27	MGP_PahariEiJ_G0025127 #29	Hoxd4 (MGP_PahariEiJ_G0025126) #29	Hoxd3 (MGP_PahariEiJ_G0025125) #28	Hoxd8 (MGP_PahariEiJ_G0025124) #30	Hoxd9 (MGP_PahariEiJ_G0025123) #31	Hoxd10 (MGP_PahariEiJ_G0025122) #32	Hoxd11 (MGP_PahariEiJ_G0025121) #33	Hoxd12 (MGP_PahariEiJ_G0025120) #34	Hoxd13 (MGP_PahariEiJ_G0025119) #35	Evx2 (MGP_PahariEiJ_G0025118) #36	Lnpk (MGP_PahariEiJ_G0025117)	Atp5g3 (MGP_PahariEiJ_G0025116)
Rat	MODERN SPECIES	13	Sestd1 (ENSRNOG00000012603)	Ccdc141 (ENSRNOG00000012580)	Ttn (ENSRNOG00000069271) #7	Plekha3 (ENSRNOG00000011830) #10	Fkbp7 (ENSRNOG00000011758) #11	Pjvk (ENSRNOG00000038165) #12	Prkra (ENSRNOG00000011195) #13	Osbpl6 (ENSRNOG00000010812) #14	Rbm45 (ENSRNOG00000010595) #15	Cyct (ENSRNOG00000024457) #17	Ttc30a (ENSRNOG00000069321) #19	Ttc30a1 (ENSRNOG00000052519) ##20	Ttc30b (ENSRNOG00000059460) #20	Agps (ENSRNOG00000001547) #21	ENSRNOG00000066660	Nfe2l2 (ENSRNOG00000001548) #22	Hnrnpa3 (ENSRNOG00000052968) #23	Mtx2 (ENSRNOG00000001559) #25	Hoxd1 (ENSRNOG00000001572) #27	Hoxd3 (ENSRNOG00000001577) #28	AABR07052559.1 (ENSRNOG00000053144)	Hoxd4 (ENSRNOG00000001578) #29	Hoxd8 (ENSRNOG00000071108) #30	Hoxd9 (ENSRNOG00000001580) #31	Hoxd10 (ENSRNOG00000001581) #32	Hoxd11 (ENSRNOG00000069591) #33	Hoxd12 (ENSRNOG00000001587) #34	Hoxd13 (ENSRNOG00000001588) #35	Evx2 (ENSRNOG00000001589) #36	Lnpk (ENSRNOG00000001593)	Atp5mc3 (ENSRNOG00000001596)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	ENSNGAG00000022834	ENSNGAG00000021249 #8	ENSNGAG00000016600 ##7	ENSNGAG00000021911 #7	Plekha3 (ENSNGAG00000020579) #10	Fkbp7 (ENSNGAG00000022641) #11	Pjvk (ENSNGAG00000022020) #12	Prkra (ENSNGAG00000021816) #13	Osbpl6 (ENSNGAG00000014527) #14	Rbm45 (ENSNGAG00000023886) #15	ENSNGAG00000021016	Cyct (ENSNGAG00000023547) #16	Pde11a (ENSNGAG00000023493) #17	ENSNGAG00000022555 #19	Agps (ENSNGAG00000020263) #21	Nfe2l2 (ENSNGAG00000022809) #22	ENSNGAG00000021745 ##23	Mtx2 (ENSNGAG00000020555) #25	Hoxd1 (ENSNGAG00000021714) #27	Hoxd3 (ENSNGAG00000021055) #28	Hoxd4 (ENSNGAG00000020270) #29	Hoxd8 (ENSNGAG00000011799) #30	Hoxd9 (ENSNGAG00000011105) #31	Hoxd10 (ENSNGAG00000023868) #32	Hoxd11 (ENSNGAG00000023438) #33	Hoxd12 (ENSNGAG00000023455) #34	Hoxd13 (ENSNGAG00000023727) #35	Evx2 (ENSNGAG00000023877) #36	Lnpk (ENSNGAG00000023466)	Atp5g3 (ENSNGAG00000004748)	Atf2 (ENSNGAG00000003870)
Lesser Egyptian jerboa	MODERN SPECIES	75	ENSJJAG00000020744 #7	ENSJJAG00000002374 ##7	ENSJJAG00000002097	ENSJJAG00000009117 #8	ENSJJAG00000015136 #9	Plekha3 (ENSJJAG00000021299) #10	Fkbp7 (ENSJJAG00000012221) #11	Pjvk (ENSJJAG00000012900) #12	Prkra (ENSJJAG00000013031) #13	Osbpl6 (ENSJJAG00000017863) #14	Rbm45 (ENSJJAG00000001312) #15	Pde11a (ENSJJAG00000018583) #17	ENSJJAG00000012087 #20	ENSJJAG00000014867 #20	Agps (ENSJJAG00000016720) #21	Nfe2l2 (ENSJJAG00000019899) #22	ENSJJAG00000000149 ##23	ENSJJAG00000013228 #25	ENSJJAG00000019952	Hoxd1 (ENSJJAG00000019059) #27	Hoxd10 (ENSJJAG00000011932) #32	Hoxd11 (ENSJJAG00000012344) #33	Hoxd12 (ENSJJAG00000016261) #34	Hoxd13 (ENSJJAG00000016388) #35	Evx2 (ENSJJAG00000017484) #36	Lnpk (ENSJJAG00000011710)	ENSJJAG00000013766	Atp5g3 (ENSJJAG00000022403)	Atf2 (ENSJJAG00000015836)	Chn1 (ENSJJAG00000015001)	ENSJJAG00000014124
Kangaroo rat	MODERN SPECIES	324	Sestd1 (ENSDORG00000012622)	ENSDORG00000027337	ENSDORG00000029701 #7	ENSDORG00000029166 #9	Plekha3 (ENSDORG00000015344) #10	Fkbp7 (ENSDORG00000013340) #11	Pjvk (ENSDORG00000013339) #12	Prkra (ENSDORG00000013338) #13	Osbpl6 (ENSDORG00000001912) #14	Rbm45 (ENSDORG00000015831) #15	Cyct (ENSDORG00000004101) #16	ENSDORG00000023150 #20	ENSDORG00000028697 #20	ENSDORG00000028567 #20	Agps (ENSDORG00000006480) #21	Nfe2l2 (ENSDORG00000030173) #22	Hnrnpa3 (ENSDORG00000011155) #23	Mtx2 (ENSDORG00000003848) #25	Hoxd1 (ENSDORG00000009445) #27	Hoxd3 (ENSDORG00000029389) #28	Hoxd4 (ENSDORG00000028681) #29	ENSDORG00000027655 #30	Hoxd10 (ENSDORG00000009436) #32	ENSDORG00000029219 #33	Hoxd12 (ENSDORG00000009434) #34	Evx2 (ENSDORG00000009432) #36	Lnpk (ENSDORG00000015736)	Atp5g3 (ENSDORG00000012973)	Atf2 (ENSDORG00000024409)	Chn1 (ENSDORG00000002182)	Chrna1 (ENSDORG00000001136)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT00900000143159	ENSGT00900000143154 #8	ENSGT00920000150542	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000014023	ENSCLAG00000015797 #8	ENSCLAG00000015650	ENSCLAG00000016023 #9	PLEKHA3 (ENSCLAG00000014135) #10	PRKRA (ENSCLAG00000010338) #13	PJVK (ENSCLAG00000010713) #12	OSBPL6 (ENSCLAG00000011433) #14	RBM45 (ENSCLAG00000015215) #15	PDE11A (ENSCLAG00000013013) #17	ENSCLAG00000013714 #20	ENSCLAG00000017938 #20	AGPS (ENSCLAG00000013279) #21	ENSCLAG00000013627	ENSCLAG00000012626	NFE2L2 (ENSCLAG00000013122) #22	HNRNPA3 (ENSCLAG00000012855) #23	ENSCLAG00000011088	MTX2 (ENSCLAG00000011598) #25	HOXD1 (ENSCLAG00000012505) #27	ENSCLAG00000013605 #28	HOXD4 (ENSCLAG00000014461) #29	ENSCLAG00000011108 #30	HOXD9 (ENSCLAG00000012447) #31	HOXD10 (ENSCLAG00000012482) #32	ENSCLAG00000012563 #33	HOXD12 (ENSCLAG00000013058) #34	HOXD13 (ENSCLAG00000013095) #35	EVX2 (ENSCLAG00000014389) #36	LNPK (ENSCLAG00000015033)	TRIML1 (ENSCLAG00000014494)
Degu	MODERN SPECIES	106	ENSODEG00000007812 #8	ENSODEG00000008370	ENSODEG00000008948 #9	PLEKHA3 (ENSODEG00000007880) #10	ENSODEG00000008149 #11	PJVK (ENSODEG00000008177) #12	ENSODEG00000008743 #13	OSBPL6 (ENSODEG00000009667) #14	ENSODEG00000019659	RBM45 (ENSODEG00000007959) #15	ENSODEG00000019574	PDE11A (ENSODEG00000010682) #17	ENSODEG00000019592 #20	ENSODEG00000020058 #20	AGPS (ENSODEG00000008272) #21	NFE2L2 (ENSODEG00000010043) #22	ENSODEG00000009265	ENSODEG00000009697	MTX2 (ENSODEG00000008062) #25	ENSODEG00000008879	HOXD1 (ENSODEG00000008961) #27	HOXD3 (ENSODEG00000009722) #28	HOXD4 (ENSODEG00000010297) #29	ENSODEG00000010496 #30	HOXD9 (ENSODEG00000008626) #31	HOXD10 (ENSODEG00000010382) #32	ENSODEG00000010934 #33	HOXD12 (ENSODEG00000008376) #34	HOXD13 (ENSODEG00000008793) #35	EVX2 (ENSODEG00000010771) #36	ENSODEG00000008992
Guinea pig	MODERN SPECIES	3	CCDC141 (ENSCPOG00000003955)	ENSCPOG00000032370 #7	ENSCPOG00000030784 ##7	ENSCPOG00000038729	ENSCPOG00000034673	ENSCPOG00000036479 #9	PLEKHA3 (ENSCPOG00000003906) #10	FKBP7 (ENSCPOG00000037159) #11	PJVK (ENSCPOG00000037882) #12	ENSCPOG00000003900 #13	OSBPL6 (ENSCPOG00000002816) #14	RBM45 (ENSCPOG00000000684) #15	PDE11A (ENSCPOG00000000682) #17	ENSCPOG00000000681 #20	AGPS (ENSCPOG00000000679) #21	NFE2L2 (ENSCPOG00000031261) #22	ENSCPOG00000004251 #23	ENSCPOG00000027250	MTX2 (ENSCPOG00000011099) #25	HOXD1 (ENSCPOG00000005509) #27	HOXD3 (ENSCPOG00000034932) #28	HOXD4 (ENSCPOG00000036552) #29	HOXD8 (ENSCPOG00000015005) #30	HOXD9 (ENSCPOG00000015006) #31	HOXD10 (ENSCPOG00000011368) #32	ENSCPOG00000019766 #33	HOXD12 (ENSCPOG00000005496) #34	HOXD13 (ENSCPOG00000006722) #35	EVX2 (ENSCPOG00000006711) #36	LNPK (ENSCPOG00000010971)	ATP5MC3 (ENSCPOG00000040161)
Naked mole-rat female	MODERN SPECIES	22	CCDC141 (ENSHGLG00000002888)	TTN (ENSHGLG00000036835) #7	ENSHGLG00000018641 #10	FKBP7 (ENSHGLG00000019268) #11	PJVK (ENSHGLG00000011003) #12	ENSHGLG00000010663 #13	ENSHGLG00000003065 #14	ENSHGLG00000040220	ENSHGLG00000045276	ENSHGLG00000007342 #15	ENSHGLG00000006609	ENSHGLG00000005226 #17	TTC30B (ENSHGLG00000042840) #20	ENSHGLG00000036841 #20	AGPS (ENSHGLG00000007541) #21	NFE2L2 (ENSHGLG00000006475) #22	HNRNPA3 (ENSHGLG00000005451) #23	ENSHGLG00000036655	ENSHGLG00000046644	ENSHGLG00000012734	MTX2 (ENSHGLG00000004177) #25	HOXD1 (ENSHGLG00000004072) #27	HOXD3 (ENSHGLG00000003761) #28	HOXD4 (ENSHGLG00000037842) #29	ENSHGLG00000003577 #30	HOXD10 (ENSHGLG00000033462) #32	HOXD9 (ENSHGLG00000007185) #31	HOXD11 (ENSHGLG00000034527) #33	HOXD12 (ENSHGLG00000005403) #34	HOXD13 (ENSHGLG00000050884) #35	EVX2 (ENSHGLG00000004218) #36
Sciuridae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.xb	ENSGT00940000156582
Marmotini	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.xb.a	ENSGT00940000156582
Alpin marmot	MODERN SPECIES	5															AGPS (ENSMMMG00000023778) #21	NFE2L2 (ENSMMMG00000023776) #22	MTX2 (ENSMMMG00000023772) #25	HOXD3 (ENSMMMG00000023768) #28	HOXD4 (ENSMMMG00000023767) #29	ENSMMMG00000023765 #30	HOXD9 (ENSMMMG00000023764) #31	HOXD10 (ENSMMMG00000023763) #32	ENSMMMG00000023762 #33	HOXD12 (ENSMMMG00000023760) #34	HOXD13 (ENSMMMG00000023759) #35	LNPK (ENSMMMG00000023755)	ENSMMMG00000023748	ATF2 (ENSMMMG00000023733)	ENSMMMG00000023730	CHN1 (ENSMMMG00000023718)	CHRNA1 (ENSMMMG00000023717)
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.xb.a	ENSGT00940000156582
Arctic ground squirrel	MODERN SPECIES	96	ENSUPAG00010005828 ##9	ENSUPAG00010005845 ##9	ENSUPAG00010005849 ##9	ENSUPAG00010005854 #8	ENSUPAG00010005857 #9	PLEKHA3 (ENSUPAG00010005864) #10	FKBP7 (ENSUPAG00010005868) #11	PJVK (ENSUPAG00010005878) #12	PRKRA (ENSUPAG00010005881) #13	OSBPL6 (ENSUPAG00010005891) #14	RBM45 (ENSUPAG00010006036) #15	ENSUPAG00010006054 #16	PDE11A (ENSUPAG00010006062) #17	ENSUPAG00010006082 #20	AGPS (ENSUPAG00010006084) #21	NFE2L2 (ENSUPAG00010006108) #22	HNRNPA3 (ENSUPAG00010006133) #23
Squirrel	MODERN SPECIES	109	ENSSTOG00000034976 ##9	ENSSTOG00000033165	ENSSTOG00000032305 #8	ENSSTOG00000032899 ##7	ENSSTOG00000006208 #9	PLEKHA3 (ENSSTOG00000006191) #10	FKBP7 (ENSSTOG00000006176) #11	PJVK (ENSSTOG00000028411) #12	PRKRA (ENSSTOG00000006156) #13	OSBPL6 (ENSSTOG00000006092) #14	RBM45 (ENSSTOG00000002708) #15	ENSSTOG00000008853 #16	PDE11A (ENSSTOG00000012639) #17	ENSSTOG00000003267 #20	AGPS (ENSSTOG00000012623) #21	NFE2L2 (ENSSTOG00000000313) #22	HNRNPA3 (ENSSTOG00000025125) #23	ENSSTOG00000030884	MTX2 (ENSSTOG00000014688) #25	HOXD1 (ENSSTOG00000012230) #27	HOXD3 (ENSSTOG00000014680) #28	HOXD4 (ENSSTOG00000029055) #29	ENSSTOG00000023453 #30	HOXD9 (ENSSTOG00000026761) #31	HOXD10 (ENSSTOG00000003935) #32	HOXD12 (ENSSTOG00000004918) #34	HOXD13 (ENSSTOG00000004117) #35	EVX2 (ENSSTOG00000014512) #36	LNPK (ENSSTOG00000014498)	ENSSTOG00000013572	ATF2 (ENSSTOG00000014079)
Eurasian red squirrel	MODERN SPECIES	12	CCDC141 (ENSSVLG00005020180)	ENSSVLG00005008368 ##9	PLEKHA3 (ENSSVLG00005005206) #10	FKBP7 (ENSSVLG00005005181) #11	ENSSVLG00005005163	PJVK (ENSSVLG00005005095) #12	PRKRA (ENSSVLG00005005027) #13	OSBPL6 (ENSSVLG00005004465) #14	RBM45 (ENSSVLG00005004137) #15	ENSSVLG00005004113 #16	PDE11A (ENSSVLG00005004050) #17	ENSSVLG00005004018 #20	ENSSVLG00005004006 #20	ENSSVLG00005003996 #20	AGPS (ENSSVLG00005003959) #21	ENSSVLG00005003903 #22	ENSSVLG00005003881 #23	MTX2 (ENSSVLG00005003812) #25	HOXD1 (ENSSVLG00005003762) #27	HOXD4 (ENSSVLG00005003676) #29	HOXD8 (ENSSVLG00005003645) #30	HOXD9 (ENSSVLG00005003618) #31	HOXD10 (ENSSVLG00005003599) #32	HOXD11 (ENSSVLG00005003581) #33	HOXD12 (ENSSVLG00005003565) #34	HOXD13 (ENSSVLG00005003554) #35	EVX2 (ENSSVLG00005003539) #36	LNPK (ENSSVLG00005003500)	ENSSVLG00005003466	ENSSVLG00005003430	ENSSVLG00005003279