Tetrapoda	ANCESTRAL SPECIES	6	ENSGT01100000263523.G.a.a ##7	ENSGT01100000263523.H ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Amniota	ANCESTRAL SPECIES	6	ENSGT01100000263523.H ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00940000173501	ENSGT00390000001859	ENSGT00940000154298.a.a
Mammalia	ANCESTRAL SPECIES	6	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.A #7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00940000173501	ENSGT00390000001859	ENSGT00940000154298.a.a
Theria	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00940000173501	ENSGT00390000001859	ENSGT00940000154298.a.a
Eutheria	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Glires	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Rodentia	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263523.A #7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Myomorpha	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT01100000263523.B ##7	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Muroidea	ANCESTRAL SPECIES	34	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT01100000263523.B ##7	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Cricetidae	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00900000143159	ENSGT01100000263523.B ##7	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001011105 #7	ENSCGRG00001011823 #8	ENSCGRG00001001535 #9	Plekha3 (ENSCGRG00001002827) #10	Fkbp7 (ENSCGRG00001004871) #11	Pjvk (ENSCGRG00001006219) #12	Prkra (ENSCGRG00001009200) #13	Osbpl6 (ENSCGRG00001002669) #14	Rbm45 (ENSCGRG00001005759) #15	Cyct (ENSCGRG00001008096) #16	Pde11a (ENSCGRG00001011422) #17	ENSCGRG00001003072 #18	Ttc30a1 (ENSCGRG00001000892) #19	Ttc30b (ENSCGRG00001002157) #20	Agps (ENSCGRG00001003863) #21	Nfe2l2 (ENSCGRG00001005715) #22	ENSCGRG00001008592 #23	ENSCGRG00001003235 #24	Mtx2 (ENSCGRG00001014247) #25	ENSCGRG00001014512 #26	Hoxd1 (ENSCGRG00001011572) #27	Hoxd3 (ENSCGRG00001011863) #28	Hoxd4 (ENSCGRG00001012360) #29	Hoxd8 (ENSCGRG00001013130) #30	Hoxd9 (ENSCGRG00001005991) #31	Hoxd10 (ENSCGRG00001008302) #32	Hoxd11 (ENSCGRG00001010386) #33	Hoxd12 (ENSCGRG00001000877) #34	Hoxd13 (ENSCGRG00001001661) #35	Evx2 (ENSCGRG00001003649) #36	ENSCGRG00001006802 #37
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000001413	ENSMAUG00000016510 #7	ENSMAUG00000018214 ##7	ENSMAUG00000018562	ENSMAUG00000019513 #8	ENSMAUG00000018786 #9	Plekha3 (ENSMAUG00000019341) #10	Fkbp7 (ENSMAUG00000016606) #11	Pjvk (ENSMAUG00000018018) #12	Prkra (ENSMAUG00000019631) #13	Osbpl6 (ENSMAUG00000018609) #14	Rbm45 (ENSMAUG00000016948) #15	Cyct (ENSMAUG00000016722) #16	Pde11a (ENSMAUG00000021257) #17	Agps (ENSMAUG00000017317) #21	Nfe2l2 (ENSMAUG00000017700) #22	ENSMAUG00000017462	Mtx2 (ENSMAUG00000017870) #25	Hoxd1 (ENSMAUG00000018401) #27	Hoxd3 (ENSMAUG00000018318) #28	Hoxd4 (ENSMAUG00000018545) #29	Hoxd8 (ENSMAUG00000018092) #30	Hoxd9 (ENSMAUG00000018538) #31	Hoxd10 (ENSMAUG00000016731) #32	ENSMAUG00000020249 #33	Hoxd12 (ENSMAUG00000018416) #34	Hoxd13 (ENSMAUG00000017185) #35	Evx2 (ENSMAUG00000020383) #36	Lnpk (ENSMAUG00000018821)	ENSMAUG00000020495	Atp5g3 (ENSMAUG00000017685)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00900000143154 #8	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Prairie vole	MODERN SPECIES	12	ENSMOCG00000017985 #8	ENSMOCG00000017796 ##7	ENSMOCG00000015811 #9	Plekha3 (ENSMOCG00000004146) #10	Fkbp7 (ENSMOCG00000008125) #11	Pjvk (ENSMOCG00000006830) #12	Prkra (ENSMOCG00000004548) #13	Osbpl6 (ENSMOCG00000017155) #14	Rbm45 (ENSMOCG00000017295) #15	Cyct (ENSMOCG00000021506) #16	Pde11a (ENSMOCG00000005959) #17	Ttc30a2 (ENSMOCG00000002802) ##20	ENSMOCG00000001098	Ttc30b (ENSMOCG00000001580) #20	Agps (ENSMOCG00000017476) #21	Nfe2l2 (ENSMOCG00000020760) #22	ENSMOCG00000019409 ##23	Mtx2 (ENSMOCG00000017110) #25	Hoxd1 (ENSMOCG00000014086) #27	Hoxd4 (ENSMOCG00000013646) #29	Hoxd3 (ENSMOCG00000022552) #28	Hoxd8 (ENSMOCG00000022746) #30	Hoxd9 (ENSMOCG00000005870) #31	Hoxd10 (ENSMOCG00000006052) #32	Hoxd11 (ENSMOCG00000019226) #33	Hoxd12 (ENSMOCG00000018953) #34	Hoxd13 (ENSMOCG00000014618) #35	Evx2 (ENSMOCG00000010466) #36	Lnpk (ENSMOCG00000022345)	ENSMOCG00000012786	Atf2 (ENSMOCG00000015301)
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000028754 ##9	ENSPEMG00000014359 #8	Ttn (ENSPEMG00000022085) #7	Plekha3 (ENSPEMG00000021541) #10	Fkbp7 (ENSPEMG00000011534) #11	Pjvk (ENSPEMG00000013970) #12	Prkra (ENSPEMG00000011967) #13	Osbpl6 (ENSPEMG00000010580) #14	Rbm45 (ENSPEMG00000002470) #15	Cyct (ENSPEMG00000028091) #16	Pde11a (ENSPEMG00000021597) #17	Ttc30a1 (ENSPEMG00000025624) #19	Ttc30b (ENSPEMG00000001902) #20	ENSPEMG00000023662	Agps (ENSPEMG00000010561) #21	Nfe2l2 (ENSPEMG00000023181) #22	Hnrnpa3 (ENSPEMG00000021885) #23	Mtx2 (ENSPEMG00000022093) #25	Hoxd1 (ENSPEMG00000021389) #27	Hoxd3 (ENSPEMG00000028862) #28	Hoxd4 (ENSPEMG00000024627) #29	ENSPEMG00000029322	ENSPEMG00000028623 #30	Hoxd9 (ENSPEMG00000006162) #31	Hoxd10 (ENSPEMG00000030445) #32	ENSPEMG00000018816 #33	Hoxd12 (ENSPEMG00000019240) #34	Hoxd13 (ENSPEMG00000022412) #35	Evx2 (ENSPEMG00000022145) #36	Lnpk (ENSPEMG00000017827)	ENSPEMG00000008662
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #19	ENSGT00390000010116.y.a.b ##20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Mouse	MODERN SPECIES	11	Sestd1 (ENSMUSG00000042272)	Ccdc141 (ENSMUSG00000044033)	Ttn (ENSMUSG00000051747) #7	Plekha3 (ENSMUSG00000002733) #10	Fkbp7 (ENSMUSG00000002732) #11	Pjvk (ENSMUSG00000075267) #12	Prkra (ENSMUSG00000002731) #13	Osbpl6 (ENSMUSG00000042359) #14	Rbm45 (ENSMUSG00000042369) #15	Cyct (ENSMUSG00000056436) #16	Pde11a (ENSMUSG00000075270) #17	Ttc30a1 (ENSMUSG00000075271) #19	Ttc30a2 (ENSMUSG00000075272) ##20	Ttc30b (ENSMUSG00000075273) #20	Agps (ENSMUSG00000042410) #21	Nfe2l2 (ENSMUSG00000015839) #22	Hnrnpa3 (ENSMUSG00000059005) #23	Mtx2 (ENSMUSG00000027099) #25	Hoxd1 (ENSMUSG00000042448) #27	Hoxd4 (ENSMUSG00000101174) #29	Hoxd3 (ENSMUSG00000079277) #28	Hoxd8 (ENSMUSG00000027102) #30	Hoxd9 (ENSMUSG00000043342) #31	Hoxd10 (ENSMUSG00000050368) #32	Hoxd11 (ENSMUSG00000042499) #33	Hoxd12 (ENSMUSG00000001823) #34	Hoxd13 (ENSMUSG00000001819) #35	Evx2 (ENSMUSG00000001815) #36	Lnpk (ENSMUSG00000009207)	Atp5g3 (ENSMUSG00000018770)	Atf2 (ENSMUSG00000027104)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000153458.B.f.e	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b #23	ENSGT00940000153147.m.b ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Steppe mouse	MODERN SPECIES	3326																Nfe2l2 (ENSMSIG00000005673) #22	ENSMSIG00000005709 #23	ENSMSIG00000005981	ENSMSIG00000006005	Mtx2 (ENSMSIG00000006053) #25	Hoxd1 (ENSMSIG00000006137) #27	Hoxd3 (ENSMSIG00000006158) #28	ENSMSIG00000006186 #29	Hoxd8 (ENSMSIG00000006283) #30	Hoxd9 (ENSMSIG00000006304) #31	Hoxd10 (ENSMSIG00000006313) #32	Hoxd11 (ENSMSIG00000006326) #33	Hoxd12 (ENSMSIG00000006333) #34	Hoxd13 (ENSMSIG00000006348) #35	Evx2 (ENSMSIG00000006361) #36	Lnpk (ENSMSIG00000006386)
spretus	MODERN SPECIES	11	Ube2e3 (MGP_SPRETEiJ_G0024618)	Zfp385b (MGP_SPRETEiJ_G0024616)	Sestd1 (MGP_SPRETEiJ_G0024615)	Ccdc141 (MGP_SPRETEiJ_G0024614)	Ttn (MGP_SPRETEiJ_G0024613) #7	Plekha3 (MGP_SPRETEiJ_G0024612) #10	Fkbp7 (MGP_SPRETEiJ_G0024611) #11	Pjvk (MGP_SPRETEiJ_G0024610) #12	Prkra (MGP_SPRETEiJ_G0024609) #13	Osbpl6 (MGP_SPRETEiJ_G0024608) #14	Rbm45 (MGP_SPRETEiJ_G0024607) #15	Cyct (MGP_SPRETEiJ_G0024606) #16	Pde11a (MGP_SPRETEiJ_G0024605) #17	MGP_SPRETEiJ_G0024604 ##20	Agps (MGP_SPRETEiJ_G0024603) #21	Nfe2l2 (MGP_SPRETEiJ_G0024602) #22	MGP_SPRETEiJ_G0024601 ##23	Mtx2 (MGP_SPRETEiJ_G0024600) #25	Hoxd1 (MGP_SPRETEiJ_G0024599) #27	MGP_SPRETEiJ_G0024598 #29	Hoxd4 (MGP_SPRETEiJ_G0024597) #29	Hoxd3 (MGP_SPRETEiJ_G0024596) #28	Hoxd8 (MGP_SPRETEiJ_G0024595) #30	Hoxd9 (MGP_SPRETEiJ_G0024594) #31	Hoxd10 (MGP_SPRETEiJ_G0024593) #32	Hoxd11 (MGP_SPRETEiJ_G0024592) #33	Hoxd12 (MGP_SPRETEiJ_G0024591) #34	Hoxd13 (MGP_SPRETEiJ_G0024590) #35	Evx2 (MGP_SPRETEiJ_G0024589) #36	Lnpk (MGP_SPRETEiJ_G0024588)	Atp5g3 (MGP_SPRETEiJ_G0024587)
Ryukyu mouse	MODERN SPECIES	11	Sestd1 (MGP_CAROLIEiJ_G0023694)	Ccdc141 (MGP_CAROLIEiJ_G0023693)	Ttn (MGP_CAROLIEiJ_G0023692) #7	Plekha3 (MGP_CAROLIEiJ_G0023691) #10	Fkbp7 (MGP_CAROLIEiJ_G0023690) #11	Pjvk (MGP_CAROLIEiJ_G0023689) #12	Prkra (MGP_CAROLIEiJ_G0023688) #13	Osbpl6 (MGP_CAROLIEiJ_G0023687) #14	Rbm45 (MGP_CAROLIEiJ_G0023686) #15	Cyct (MGP_CAROLIEiJ_G0023685) #16	MGP_CAROLIEiJ_G0023684	Pde11a (MGP_CAROLIEiJ_G0023683) #17	MGP_CAROLIEiJ_G0023682 #20	MGP_CAROLIEiJ_G0023681 #20	Agps (MGP_CAROLIEiJ_G0023680) #21	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #22	MGP_CAROLIEiJ_G0023678 #23	Mtx2 (MGP_CAROLIEiJ_G0023677) #25	Hoxd1 (MGP_CAROLIEiJ_G0023676) #27	MGP_CAROLIEiJ_G0023675 #29	Hoxd4 (MGP_CAROLIEiJ_G0023674) #29	Hoxd3 (MGP_CAROLIEiJ_G0023673) #28	Hoxd8 (MGP_CAROLIEiJ_G0023672) #30	Hoxd9 (MGP_CAROLIEiJ_G0023671) #31	Hoxd10 (MGP_CAROLIEiJ_G0023670) #32	Hoxd11 (MGP_CAROLIEiJ_G0023669) #33	Hoxd12 (MGP_CAROLIEiJ_G0023668) #34	Hoxd13 (MGP_CAROLIEiJ_G0023667) #35	Evx2 (MGP_CAROLIEiJ_G0023666) #36	Lnpk (MGP_CAROLIEiJ_G0023665)	Atp5g3 (MGP_CAROLIEiJ_G0023664)
Shrew mouse	MODERN SPECIES	16	Zfp385b (MGP_PahariEiJ_G0025146)	Sestd1 (MGP_PahariEiJ_G0025145)	Ccdc141 (MGP_PahariEiJ_G0025144)	MGP_PahariEiJ_G0025143 #7	Plekha3 (MGP_PahariEiJ_G0025142) #10	Fkbp7 (MGP_PahariEiJ_G0025141) #11	Pjvk (MGP_PahariEiJ_G0025140) #12	Prkra (MGP_PahariEiJ_G0025139) #13	Osbpl6 (MGP_PahariEiJ_G0025138) #14	Rbm45 (MGP_PahariEiJ_G0025137) #15	Cyct (MGP_PahariEiJ_G0025136) #16	Pde11a (MGP_PahariEiJ_G0025135) #17	MGP_PahariEiJ_G0025134 ##20	MGP_PahariEiJ_G0025133 ##20	MGP_PahariEiJ_G0025132 #21	Nfe2l2 (MGP_PahariEiJ_G0025131) #22	Hnrnpa3 (MGP_PahariEiJ_G0025130) #23	Mtx2 (MGP_PahariEiJ_G0025129) #25	Hoxd1 (MGP_PahariEiJ_G0025128) #27	MGP_PahariEiJ_G0025127 #29	Hoxd4 (MGP_PahariEiJ_G0025126) #29	Hoxd3 (MGP_PahariEiJ_G0025125) #28	Hoxd8 (MGP_PahariEiJ_G0025124) #30	Hoxd9 (MGP_PahariEiJ_G0025123) #31	Hoxd10 (MGP_PahariEiJ_G0025122) #32	Hoxd11 (MGP_PahariEiJ_G0025121) #33	Hoxd12 (MGP_PahariEiJ_G0025120) #34	Hoxd13 (MGP_PahariEiJ_G0025119) #35	Evx2 (MGP_PahariEiJ_G0025118) #36	Lnpk (MGP_PahariEiJ_G0025117)	Atp5g3 (MGP_PahariEiJ_G0025116)
Rat	MODERN SPECIES	13	Sestd1 (ENSRNOG00000012603)	Ccdc141 (ENSRNOG00000012580)	Ttn (ENSRNOG00000069271) #7	Plekha3 (ENSRNOG00000011830) #10	Fkbp7 (ENSRNOG00000011758) #11	Pjvk (ENSRNOG00000038165) #12	Prkra (ENSRNOG00000011195) #13	Osbpl6 (ENSRNOG00000010812) #14	Rbm45 (ENSRNOG00000010595) #15	Cyct (ENSRNOG00000024457) #17	Ttc30a (ENSRNOG00000069321) #19	Ttc30a1 (ENSRNOG00000052519) ##20	Ttc30b (ENSRNOG00000059460) #20	Agps (ENSRNOG00000001547) #21	ENSRNOG00000066660	Nfe2l2 (ENSRNOG00000001548) #22	Hnrnpa3 (ENSRNOG00000052968) #23	Mtx2 (ENSRNOG00000001559) #25	Hoxd1 (ENSRNOG00000001572) #27	Hoxd3 (ENSRNOG00000001577) #28	AABR07052559.1 (ENSRNOG00000053144)	Hoxd4 (ENSRNOG00000001578) #29	Hoxd8 (ENSRNOG00000071108) #30	Hoxd9 (ENSRNOG00000001580) #31	Hoxd10 (ENSRNOG00000001581) #32	Hoxd11 (ENSRNOG00000069591) #33	Hoxd12 (ENSRNOG00000001587) #34	Hoxd13 (ENSRNOG00000001588) #35	Evx2 (ENSRNOG00000001589) #36	Lnpk (ENSRNOG00000001593)	Atp5mc3 (ENSRNOG00000001596)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	ENSNGAG00000022834	ENSNGAG00000021249 #8	ENSNGAG00000016600 ##7	ENSNGAG00000021911 #7	Plekha3 (ENSNGAG00000020579) #10	Fkbp7 (ENSNGAG00000022641) #11	Pjvk (ENSNGAG00000022020) #12	Prkra (ENSNGAG00000021816) #13	Osbpl6 (ENSNGAG00000014527) #14	Rbm45 (ENSNGAG00000023886) #15	ENSNGAG00000021016	Cyct (ENSNGAG00000023547) #16	Pde11a (ENSNGAG00000023493) #17	ENSNGAG00000022555 #19	Agps (ENSNGAG00000020263) #21	Nfe2l2 (ENSNGAG00000022809) #22	ENSNGAG00000021745 ##23	Mtx2 (ENSNGAG00000020555) #25	Hoxd1 (ENSNGAG00000021714) #27	Hoxd3 (ENSNGAG00000021055) #28	Hoxd4 (ENSNGAG00000020270) #29	Hoxd8 (ENSNGAG00000011799) #30	Hoxd9 (ENSNGAG00000011105) #31	Hoxd10 (ENSNGAG00000023868) #32	Hoxd11 (ENSNGAG00000023438) #33	Hoxd12 (ENSNGAG00000023455) #34	Hoxd13 (ENSNGAG00000023727) #35	Evx2 (ENSNGAG00000023877) #36	Lnpk (ENSNGAG00000023466)	Atp5g3 (ENSNGAG00000004748)	Atf2 (ENSNGAG00000003870)
Lesser Egyptian jerboa	MODERN SPECIES	75	ENSJJAG00000020744 #7	ENSJJAG00000002374 ##7	ENSJJAG00000002097	ENSJJAG00000009117 #8	ENSJJAG00000015136 #9	Plekha3 (ENSJJAG00000021299) #10	Fkbp7 (ENSJJAG00000012221) #11	Pjvk (ENSJJAG00000012900) #12	Prkra (ENSJJAG00000013031) #13	Osbpl6 (ENSJJAG00000017863) #14	Rbm45 (ENSJJAG00000001312) #15	Pde11a (ENSJJAG00000018583) #17	ENSJJAG00000012087 #20	ENSJJAG00000014867 #20	Agps (ENSJJAG00000016720) #21	Nfe2l2 (ENSJJAG00000019899) #22	ENSJJAG00000000149 ##23	ENSJJAG00000013228 #25	ENSJJAG00000019952	Hoxd1 (ENSJJAG00000019059) #27	Hoxd10 (ENSJJAG00000011932) #32	Hoxd11 (ENSJJAG00000012344) #33	Hoxd12 (ENSJJAG00000016261) #34	Hoxd13 (ENSJJAG00000016388) #35	Evx2 (ENSJJAG00000017484) #36	Lnpk (ENSJJAG00000011710)	ENSJJAG00000013766	Atp5g3 (ENSJJAG00000022403)	Atf2 (ENSJJAG00000015836)	Chn1 (ENSJJAG00000015001)	ENSJJAG00000014124
Kangaroo rat	MODERN SPECIES	324	Sestd1 (ENSDORG00000012622)	ENSDORG00000027337	ENSDORG00000029701 #7	ENSDORG00000029166 #9	Plekha3 (ENSDORG00000015344) #10	Fkbp7 (ENSDORG00000013340) #11	Pjvk (ENSDORG00000013339) #12	Prkra (ENSDORG00000013338) #13	Osbpl6 (ENSDORG00000001912) #14	Rbm45 (ENSDORG00000015831) #15	Cyct (ENSDORG00000004101) #16	ENSDORG00000023150 #20	ENSDORG00000028697 #20	ENSDORG00000028567 #20	Agps (ENSDORG00000006480) #21	Nfe2l2 (ENSDORG00000030173) #22	Hnrnpa3 (ENSDORG00000011155) #23	Mtx2 (ENSDORG00000003848) #25	Hoxd1 (ENSDORG00000009445) #27	Hoxd3 (ENSDORG00000029389) #28	Hoxd4 (ENSDORG00000028681) #29	ENSDORG00000027655 #30	Hoxd10 (ENSDORG00000009436) #32	ENSDORG00000029219 #33	Hoxd12 (ENSDORG00000009434) #34	Evx2 (ENSDORG00000009432) #36	Lnpk (ENSDORG00000015736)	Atp5g3 (ENSDORG00000012973)	Atf2 (ENSDORG00000024409)	Chn1 (ENSDORG00000002182)	Chrna1 (ENSDORG00000001136)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT01100000263523.A #7	ENSGT01100000263523.B ##7	ENSGT00900000143159	ENSGT00900000143154 #8	ENSGT00920000150542	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000014023	ENSCLAG00000015797 #8	ENSCLAG00000015650	ENSCLAG00000016023 #9	PLEKHA3 (ENSCLAG00000014135) #10	PRKRA (ENSCLAG00000010338) #13	PJVK (ENSCLAG00000010713) #12	OSBPL6 (ENSCLAG00000011433) #14	RBM45 (ENSCLAG00000015215) #15	PDE11A (ENSCLAG00000013013) #17	ENSCLAG00000013714 #20	ENSCLAG00000017938 #20	AGPS (ENSCLAG00000013279) #21	ENSCLAG00000013627	ENSCLAG00000012626	NFE2L2 (ENSCLAG00000013122) #22	HNRNPA3 (ENSCLAG00000012855) #23	ENSCLAG00000011088	MTX2 (ENSCLAG00000011598) #25	HOXD1 (ENSCLAG00000012505) #27	ENSCLAG00000013605 #28	HOXD4 (ENSCLAG00000014461) #29	ENSCLAG00000011108 #30	HOXD9 (ENSCLAG00000012447) #31	HOXD10 (ENSCLAG00000012482) #32	ENSCLAG00000012563 #33	HOXD12 (ENSCLAG00000013058) #34	HOXD13 (ENSCLAG00000013095) #35	EVX2 (ENSCLAG00000014389) #36	LNPK (ENSCLAG00000015033)	TRIML1 (ENSCLAG00000014494)
Degu	MODERN SPECIES	106	ENSODEG00000007812 #8	ENSODEG00000008370	ENSODEG00000008948 #9	PLEKHA3 (ENSODEG00000007880) #10	ENSODEG00000008149 #11	PJVK (ENSODEG00000008177) #12	ENSODEG00000008743 #13	OSBPL6 (ENSODEG00000009667) #14	ENSODEG00000019659	RBM45 (ENSODEG00000007959) #15	ENSODEG00000019574	PDE11A (ENSODEG00000010682) #17	ENSODEG00000019592 #20	ENSODEG00000020058 #20	AGPS (ENSODEG00000008272) #21	NFE2L2 (ENSODEG00000010043) #22	ENSODEG00000009265	ENSODEG00000009697	MTX2 (ENSODEG00000008062) #25	ENSODEG00000008879	HOXD1 (ENSODEG00000008961) #27	HOXD3 (ENSODEG00000009722) #28	HOXD4 (ENSODEG00000010297) #29	ENSODEG00000010496 #30	HOXD9 (ENSODEG00000008626) #31	HOXD10 (ENSODEG00000010382) #32	ENSODEG00000010934 #33	HOXD12 (ENSODEG00000008376) #34	HOXD13 (ENSODEG00000008793) #35	EVX2 (ENSODEG00000010771) #36	ENSODEG00000008992
Guinea pig	MODERN SPECIES	3	CCDC141 (ENSCPOG00000003955)	ENSCPOG00000032370 #7	ENSCPOG00000030784 ##7	ENSCPOG00000038729	ENSCPOG00000034673	ENSCPOG00000036479 #9	PLEKHA3 (ENSCPOG00000003906) #10	FKBP7 (ENSCPOG00000037159) #11	PJVK (ENSCPOG00000037882) #12	ENSCPOG00000003900 #13	OSBPL6 (ENSCPOG00000002816) #14	RBM45 (ENSCPOG00000000684) #15	PDE11A (ENSCPOG00000000682) #17	ENSCPOG00000000681 #20	AGPS (ENSCPOG00000000679) #21	NFE2L2 (ENSCPOG00000031261) #22	ENSCPOG00000004251 #23	ENSCPOG00000027250	MTX2 (ENSCPOG00000011099) #25	HOXD1 (ENSCPOG00000005509) #27	HOXD3 (ENSCPOG00000034932) #28	HOXD4 (ENSCPOG00000036552) #29	HOXD8 (ENSCPOG00000015005) #30	HOXD9 (ENSCPOG00000015006) #31	HOXD10 (ENSCPOG00000011368) #32	ENSCPOG00000019766 #33	HOXD12 (ENSCPOG00000005496) #34	HOXD13 (ENSCPOG00000006722) #35	EVX2 (ENSCPOG00000006711) #36	LNPK (ENSCPOG00000010971)	ATP5MC3 (ENSCPOG00000040161)
Naked mole-rat female	MODERN SPECIES	22	CCDC141 (ENSHGLG00000002888)	TTN (ENSHGLG00000036835) #7	ENSHGLG00000018641 #10	FKBP7 (ENSHGLG00000019268) #11	PJVK (ENSHGLG00000011003) #12	ENSHGLG00000010663 #13	ENSHGLG00000003065 #14	ENSHGLG00000040220	ENSHGLG00000045276	ENSHGLG00000007342 #15	ENSHGLG00000006609	ENSHGLG00000005226 #17	TTC30B (ENSHGLG00000042840) #20	ENSHGLG00000036841 #20	AGPS (ENSHGLG00000007541) #21	NFE2L2 (ENSHGLG00000006475) #22	HNRNPA3 (ENSHGLG00000005451) #23	ENSHGLG00000036655	ENSHGLG00000046644	ENSHGLG00000012734	MTX2 (ENSHGLG00000004177) #25	HOXD1 (ENSHGLG00000004072) #27	HOXD3 (ENSHGLG00000003761) #28	HOXD4 (ENSHGLG00000037842) #29	ENSHGLG00000003577 #30	HOXD10 (ENSHGLG00000033462) #32	HOXD9 (ENSHGLG00000007185) #31	HOXD11 (ENSHGLG00000034527) #33	HOXD12 (ENSHGLG00000005403) #34	HOXD13 (ENSHGLG00000050884) #35	EVX2 (ENSHGLG00000004218) #36
Sciuridae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.xb	ENSGT00940000156582
Marmotini	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.xb.a	ENSGT00940000156582
Alpin marmot	MODERN SPECIES	5															AGPS (ENSMMMG00000023778) #21	NFE2L2 (ENSMMMG00000023776) #22	MTX2 (ENSMMMG00000023772) #25	HOXD3 (ENSMMMG00000023768) #28	HOXD4 (ENSMMMG00000023767) #29	ENSMMMG00000023765 #30	HOXD9 (ENSMMMG00000023764) #31	HOXD10 (ENSMMMG00000023763) #32	ENSMMMG00000023762 #33	HOXD12 (ENSMMMG00000023760) #34	HOXD13 (ENSMMMG00000023759) #35	LNPK (ENSMMMG00000023755)	ENSMMMG00000023748	ATF2 (ENSMMMG00000023733)	ENSMMMG00000023730	CHN1 (ENSMMMG00000023718)	CHRNA1 (ENSMMMG00000023717)
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.xb.a	ENSGT00940000156582
Arctic ground squirrel	MODERN SPECIES	96	ENSUPAG00010005828 ##9	ENSUPAG00010005845 ##9	ENSUPAG00010005849 ##9	ENSUPAG00010005854 #8	ENSUPAG00010005857 #9	PLEKHA3 (ENSUPAG00010005864) #10	FKBP7 (ENSUPAG00010005868) #11	PJVK (ENSUPAG00010005878) #12	PRKRA (ENSUPAG00010005881) #13	OSBPL6 (ENSUPAG00010005891) #14	RBM45 (ENSUPAG00010006036) #15	ENSUPAG00010006054 #16	PDE11A (ENSUPAG00010006062) #17	ENSUPAG00010006082 #20	AGPS (ENSUPAG00010006084) #21	NFE2L2 (ENSUPAG00010006108) #22	HNRNPA3 (ENSUPAG00010006133) #23
Squirrel	MODERN SPECIES	109	ENSSTOG00000034976 ##9	ENSSTOG00000033165	ENSSTOG00000032305 #8	ENSSTOG00000032899 ##7	ENSSTOG00000006208 #9	PLEKHA3 (ENSSTOG00000006191) #10	FKBP7 (ENSSTOG00000006176) #11	PJVK (ENSSTOG00000028411) #12	PRKRA (ENSSTOG00000006156) #13	OSBPL6 (ENSSTOG00000006092) #14	RBM45 (ENSSTOG00000002708) #15	ENSSTOG00000008853 #16	PDE11A (ENSSTOG00000012639) #17	ENSSTOG00000003267 #20	AGPS (ENSSTOG00000012623) #21	NFE2L2 (ENSSTOG00000000313) #22	HNRNPA3 (ENSSTOG00000025125) #23	ENSSTOG00000030884	MTX2 (ENSSTOG00000014688) #25	HOXD1 (ENSSTOG00000012230) #27	HOXD3 (ENSSTOG00000014680) #28	HOXD4 (ENSSTOG00000029055) #29	ENSSTOG00000023453 #30	HOXD9 (ENSSTOG00000026761) #31	HOXD10 (ENSSTOG00000003935) #32	HOXD12 (ENSSTOG00000004918) #34	HOXD13 (ENSSTOG00000004117) #35	EVX2 (ENSSTOG00000014512) #36	LNPK (ENSSTOG00000014498)	ENSSTOG00000013572	ATF2 (ENSSTOG00000014079)
Eurasian red squirrel	MODERN SPECIES	12	CCDC141 (ENSSVLG00005020180)	ENSSVLG00005008368 ##9	PLEKHA3 (ENSSVLG00005005206) #10	FKBP7 (ENSSVLG00005005181) #11	ENSSVLG00005005163	PJVK (ENSSVLG00005005095) #12	PRKRA (ENSSVLG00005005027) #13	OSBPL6 (ENSSVLG00005004465) #14	RBM45 (ENSSVLG00005004137) #15	ENSSVLG00005004113 #16	PDE11A (ENSSVLG00005004050) #17	ENSSVLG00005004018 #20	ENSSVLG00005004006 #20	ENSSVLG00005003996 #20	AGPS (ENSSVLG00005003959) #21	ENSSVLG00005003903 #22	ENSSVLG00005003881 #23	MTX2 (ENSSVLG00005003812) #25	HOXD1 (ENSSVLG00005003762) #27	HOXD4 (ENSSVLG00005003676) #29	HOXD8 (ENSSVLG00005003645) #30	HOXD9 (ENSSVLG00005003618) #31	HOXD10 (ENSSVLG00005003599) #32	HOXD11 (ENSSVLG00005003581) #33	HOXD12 (ENSSVLG00005003565) #34	HOXD13 (ENSSVLG00005003554) #35	EVX2 (ENSSVLG00005003539) #36	LNPK (ENSSVLG00005003500)	ENSSVLG00005003466	ENSSVLG00005003430	ENSSVLG00005003279
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.B ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.K ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Rabbit	MODERN SPECIES	18	ENSOCUG00000035152 ##9	ENSOCUG00000033996 ##7	ENSOCUG00000016777 ##7	PLEKHA3 (ENSOCUG00000005495) #10	FKBP7 (ENSOCUG00000024679) #11	PJVK (ENSOCUG00000005493) #12	PRKRA (ENSOCUG00000005489) #13	OSBPL6 (ENSOCUG00000004078) #14	RBM45 (ENSOCUG00000001125) #15	ENSOCUG00000025342 #16	ENSOCUG00000039559	ENSOCUG00000008038	ENSOCUG00000039012 #20	ENSOCUG00000029884 #20	AGPS (ENSOCUG00000011521) #21	NFE2L2 (ENSOCUG00000001009) #22	ENSOCUG00000002743 #23	ENSOCUG00000030456	ENSOCUG00000025666	MTX2 (ENSOCUG00000008760) #25	HOXD1 (ENSOCUG00000015582) #27	HOXD3 (ENSOCUG00000014119) #28	HOXD4 (ENSOCUG00000002413) #29	ENSOCUG00000035940 #30	HOXD9 (ENSOCUG00000023956) #31	HOXD10 (ENSOCUG00000008964) #32	HOXD11 (ENSOCUG00000013942) #33	HOXD12 (ENSOCUG00000002412) #34	HOXD13 (ENSOCUG00000029547) #35	EVX2 (ENSOCUG00000032776) #36	LNPK (ENSOCUG00000008962)
Pika	MODERN SPECIES	6647													GUCA1A (ENSOPRG00000013964)	GUCA1ANB (ENSOPRG00000018852)	TAF8 (ENSOPRG00000013945)	NFE2L2 (ENSOPRG00000013934) #22
Tree shrew	MODERN SPECIES	650																NFE2L2 (ENSTBEG00000001588) #22
Primates	ANCESTRAL SPECIES	13	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.F ##7	ENSGT01100000263523.L ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Catarrhini	ANCESTRAL SPECIES	16	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.F ##7	ENSGT01100000263523.L ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00950000182922.a.a.a.b.a.a.b.b
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000168702	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859
Pig-tailed macaque	MODERN SPECIES	585												PDE11A (ENSMNEG00000037080) #17	TTC30A (ENSMNEG00000000192) #20	TTC30B (ENSMNEG00000011632) #20	AGPS (ENSMNEG00000043672) #21	NFE2L2 (ENSMNEG00000028208) #22	ENSMNEG00000034936 ##23	ENSMNEG00000026533	MTX2 (ENSMNEG00000032881) #25	HOXD1 (ENSMNEG00000010514) #27	ENSMNEG00000018849	HOXD3 (ENSMNEG00000040202) #28	HOXD4 (ENSMNEG00000030845) #29	HOXD8 (ENSMNEG00000028133) #30	HOXD9 (ENSMNEG00000044938) #31	HOXD10 (ENSMNEG00000033923) #32	HOXD11 (ENSMNEG00000029127) #33	HOXD12 (ENSMNEG00000002891) #34	HOXD13 (ENSMNEG00000027142) #35	EVX2 (ENSMNEG00000028323) #36	ENSMNEG00000024050
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000168702	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000170471.B.a.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36
Crab-eating macaque	MODERN SPECIES	3	SESTD1 (ENSMFAG00000013388)	CCDC141 (ENSMFAG00000000963)	ENSMFAG00000063214 #7	PLEKHA3 (ENSMFAG00000031192) #10	FKBP7 (ENSMFAG00000034329) #11	PJVK (ENSMFAG00000001249) #12	PRKRA (ENSMFAG00000040213) #13	OSBPL6 (ENSMFAG00000003510) #14	ENSMFAG00000060300	RBM45 (ENSMFAG00000042524) #15	ENSMFAG00000034055	PDE11A (ENSMFAG00000042268) #17	TTC30A (ENSMFAG00000053112) #20	TTC30B (ENSMFAG00000057741) #20	AGPS (ENSMFAG00000038904) #21	NFE2L2 (ENSMFAG00000041108) #22	HNRNPA3 (ENSMFAG00000000823) #23	ENSMFAG00000058081	ENSMFAG00000065500	MTX2 (ENSMFAG00000026822) #25	HOXD1 (ENSMFAG00000046035) #27	ENSMFAG00000047422	HOXD3 (ENSMFAG00000034065) #28	HOXD4 (ENSMFAG00000052240) #29	HOXD8 (ENSMFAG00000065214) #30	HOXD9 (ENSMFAG00000000099) #31	HOXD10 (ENSMFAG00000031117) #32	ENSMFAG00000043724 #33	HOXD12 (ENSMFAG00000051547) #34	HOXD13 (ENSMFAG00000033237) #35	ENSMFAG00000053875
Rhesus	MODERN SPECIES	3	ZNF385B (ENSMMUG00000003855)	SESTD1 (ENSMMUG00000019690)	ENSMMUG00000019689	TTN (ENSMMUG00000009038) #7	PLEKHA3 (ENSMMUG00000002189) #10	FKBP7 (ENSMMUG00000002187) #11	PJVK (ENSMMUG00000054264) #12	PRKRA (ENSMMUG00000002185) #13	OSBPL6 (ENSMMUG00000002183) #14	RBM45 (ENSMMUG00000002013) #15	PDE11A (ENSMMUG00000002011) #17	TTC30A (ENSMMUG00000041827) #20	TTC30B (ENSMMUG00000043597) #20	AGPS (ENSMMUG00000008502) #21	ENSMMUG00000065205	NFE2L2 (ENSMMUG00000001861) #22	HNRNPA3 (ENSMMUG00000001858) #23	ENSMMUG00000062299	ENSMMUG00000054983	ENSMMUG00000031367	MTX2 (ENSMMUG00000010185) #25	HOXD1 (ENSMMUG00000065344) #27	ENSMMUG00000052177	HOXD3 (ENSMMUG00000051761) #28	HOXD4 (ENSMMUG00000060947) #29	HOXD8 (ENSMMUG00000023504) #30	HOXD9 (ENSMMUG00000032599) #31	HOXD10 (ENSMMUG00000046368) #32	HOXD11 (ENSMMUG00000047915) #33	HOXD12 (ENSMMUG00000023501) #34	HOXD13 (ENSMMUG00000055831) #35
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00950000182922.a.a.a.b.a.a.b.b
Olive baboon	MODERN SPECIES	1	SESTD1 (ENSPANG00000020529)	CCDC141 (ENSPANG00000006772)	TTN (ENSPANG00000022292) #7	PLEKHA3 (ENSPANG00000013332) #10	FKBP7 (ENSPANG00000019540) #11	PJVK (ENSPANG00000014211) #12	PRKRA (ENSPANG00000001046) #13	OSBPL6 (ENSPANG00000016378) #14	ENSPANG00000046096	RBM45 (ENSPANG00000016088) #15	ENSPANG00000029672	PDE11A (ENSPANG00000025222) #17	TTC30A (ENSPANG00000041839) #20	TTC30B (ENSPANG00000046724) #20	AGPS (ENSPANG00000004764) #21	NFE2L2 (ENSPANG00000039361) #22	ENSPANG00000018337 #23	ENSPANG00000045287	MTX2 (ENSPANG00000013333) #25	HOXD1 (ENSPANG00000009593) #27	HOXD3 (ENSPANG00000000543) #28	HOXD4 (ENSPANG00000000542) #29	HOXD8 (ENSPANG00000049199) #30	HOXD9 (ENSPANG00000001061) #31	HOXD10 (ENSPANG00000050198) #32	HOXD11 (ENSPANG00000049530) #33	ENSPANG00000044332 #34	ENSPANG00000044695 #35	ENSPANG00000039545 #36	LNPK (ENSPANG00000011787)	ATP5MC3 (ENSPANG00000031591)
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00950000182922.a.a.a.b.a.a.b.b
Sooty mangabey	MODERN SPECIES	570	SESTD1 (ENSCATG00000024404)	CCDC141 (ENSCATG00000030397)	TTN (ENSCATG00000041967) #7	PLEKHA3 (ENSCATG00000038850) #10	FKBP7 (ENSCATG00000037065) #11	PJVK (ENSCATG00000035539) #12	PRKRA (ENSCATG00000032736) #13	OSBPL6 (ENSCATG00000040355) #14	RBM45 (ENSCATG00000041082) #15	ENSCATG00000039319 #16	ENSCATG00000008317	PDE11A (ENSCATG00000042325) #17	TTC30A (ENSCATG00000000123) #20	TTC30B (ENSCATG00000004635) #20	AGPS (ENSCATG00000038387) #21	NFE2L2 (ENSCATG00000036834) #22	ENSCATG00000001855	HNRNPA3 (ENSCATG00000032162) #23	ENSCATG00000022731	MTX2 (ENSCATG00000039959) #25	HOXD1 (ENSCATG00000032397) #27	ENSCATG00000032250	HOXD3 (ENSCATG00000029355) #28	HOXD4 (ENSCATG00000041719) #29	HOXD8 (ENSCATG00000032148) #30	HOXD9 (ENSCATG00000037190) #31	HOXD11 (ENSCATG00000031157) #33	HOXD10 (ENSCATG00000032256) #32	HOXD12 (ENSCATG00000032043) #34	HOXD13 (ENSCATG00000031889) #35	EVX2 (ENSCATG00000038250) #36
Drill	MODERN SPECIES	1072			ENSMLEG00000034299 ##7	PLEKHA3 (ENSMLEG00000030446) #10	FKBP7 (ENSMLEG00000015651) #11	PJVK (ENSMLEG00000027972) #12	PRKRA (ENSMLEG00000019578) #13	OSBPL6 (ENSMLEG00000021439) #14	RBM45 (ENSMLEG00000042404) #15	PDE11A (ENSMLEG00000044286) #17	ENSMLEG00000035955	ENSMLEG00000039892	TTC30A (ENSMLEG00000027775) #20	TTC30B (ENSMLEG00000027894) #20	AGPS (ENSMLEG00000033858) #21	NFE2L2 (ENSMLEG00000042705) #22	MTX2 (ENSMLEG00000002029) #25	HOXD1 (ENSMLEG00000035890) #27	HOXD3 (ENSMLEG00000037278) #28	HOXD4 (ENSMLEG00000024188) #29	ENSMLEG00000042507 #30	HOXD9 (ENSMLEG00000025695) #31	HOXD10 (ENSMLEG00000044067) #32	ENSMLEG00000030792 #33	HOXD12 (ENSMLEG00000032533) #34	HOXD13 (ENSMLEG00000031532) #35	EVX2 (ENSMLEG00000035528) #36	LNPK (ENSMLEG00000033659)	ENSMLEG00000001270	ATP5MC3 (ENSMLEG00000043816)	ATF2 (ENSMLEG00000035167)
Vervet Monkey	MODERN SPECIES	1	UBE2E3 (ENSCSAG00000012910)	CWC22 (ENSCSAG00000012925)	ZNF385B (ENSCSAG00000012932)	SESTD1 (ENSCSAG00000012944)	CCDC141 (ENSCSAG00000012957)	TTN (ENSCSAG00000013817) #7	PLEKHA3 (ENSCSAG00000014182) #10	FKBP7 (ENSCSAG00000014194) #11	PJVK (ENSCSAG00000014212) #12	OSBPL6 (ENSCSAG00000014221) #14	RBM45 (ENSCSAG00000014231) #15	ENSCSAG00000014240	PDE11A (ENSCSAG00000014313) #17	TTC30A (ENSCSAG00000018651) #20	AGPS (ENSCSAG00000014345) #21	NFE2L2 (ENSCSAG00000014353) #22	ENSCSAG00000014399 #23	MTX2 (ENSCSAG00000014412) #25	HOXD1 (ENSCSAG00000014419) #27	HOXD3 (ENSCSAG00000014422) #28	HOXD4 (ENSCSAG00000014429) #29	HOXD8 (ENSCSAG00000014437) #30	HOXD9 (ENSCSAG00000014441) #31	HOXD10 (ENSCSAG00000014448) #32	HOXD11 (ENSCSAG00000014457) #33	HOXD12 (ENSCSAG00000014464) #34	HOXD13 (ENSCSAG00000014475) #35	EVX2 (ENSCSAG00000014486) #36	LNPK (ENSCSAG00000014506)	ATF2 (ENSCSAG00000014523)	CHN1 (ENSCSAG00000014539)
Rhinopithecus	ANCESTRAL SPECIES	148	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000168702	ENSGT00910000148248	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00960000186717.a	ENSGT00940000154301.`b.a	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36
Golden snub-nosed monkey	MODERN SPECIES	722	CWC22 (ENSRROG00000037520)	ZNF385B (ENSRROG00000003706)	SESTD1 (ENSRROG00000029348)	CCDC141 (ENSRROG00000037411)	TTN (ENSRROG00000045525) #7	PLEKHA3 (ENSRROG00000041107) #10	FKBP7 (ENSRROG00000020947) #11	PJVK (ENSRROG00000007464) #12	PRKRA (ENSRROG00000035389) #13	OSBPL6 (ENSRROG00000036096) #14	RBM45 (ENSRROG00000031398) #15	ENSRROG00000041594	PDE11A (ENSRROG00000028809) #17	TTC30A (ENSRROG00000023478) #20	AGPS (ENSRROG00000035068) #21	NFE2L2 (ENSRROG00000045317) #22	ENSRROG00000028794 #23	MTX2 (ENSRROG00000030249) #25	ENSRROG00000020854	ENSRROG00000042876	ENSRROG00000038369	HOXD1 (ENSRROG00000035364) #27	HOXD3 (ENSRROG00000044509) #28	HOXD4 (ENSRROG00000026646) #29	ENSRROG00000024611 #30	HOXD10 (ENSRROG00000036162) #32	HOXD9 (ENSRROG00000032216) #31	ENSRROG00000043226 #33	HOXD12 (ENSRROG00000043268) #34	HOXD13 (ENSRROG00000040419) #35	EVX2 (ENSRROG00000044705) #36
Black snub-nosed monkey	MODERN SPECIES	241	ENSRBIG00000043799 #7	ENSRBIG00000037878 ##9	ENSRBIG00000029254 #7	PLEKHA3 (ENSRBIG00000003168) #10	FKBP7 (ENSRBIG00000040596) #11	PJVK (ENSRBIG00000034251) #12	ENSRBIG00000014635	PRKRA (ENSRBIG00000035301) #13	OSBPL6 (ENSRBIG00000040280) #14	RBM45 (ENSRBIG00000033680) #15	PDE11A (ENSRBIG00000043623) #17	ENSRBIG00000035583	ENSRBIG00000030274	TTC30A (ENSRBIG00000041155) #20	AGPS (ENSRBIG00000039582) #21	NFE2L2 (ENSRBIG00000042825) #22	ENSRBIG00000012615 ##23	MTX2 (ENSRBIG00000043097) #25	ENSRBIG00000042767	ENSRBIG00000032024	HOXD1 (ENSRBIG00000031297) #27	HOXD3 (ENSRBIG00000044829) #28	HOXD4 (ENSRBIG00000027637) #29	HOXD8 (ENSRBIG00000036417) #30	HOXD9 (ENSRBIG00000035340) #31	HOXD10 (ENSRBIG00000030470) #32	HOXD12 (ENSRBIG00000040792) #34	ENSRBIG00000035253 #33	HOXD13 (ENSRBIG00000033719) #35	LNPK (ENSRBIG00000038235)	ENSRBIG00000038159
Hominoidea	ANCESTRAL SPECIES	15	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.F ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36
Hominidae	ANCESTRAL SPECIES	17	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859
Pan	ANCESTRAL SPECIES	12	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00910000147200	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859
Bonobo	MODERN SPECIES	15	ENSPPAG00000026551	ENSPPAG00000037260 ##9	ENSPPAG00000034897 #7	PLEKHA3 (ENSPPAG00000036608) #10	FKBP7 (ENSPPAG00000043985) #11	PJVK (ENSPPAG00000037654) #12	PRKRA (ENSPPAG00000043306) #13	OSBPL6 (ENSPPAG00000025663) #14	RBM45 (ENSPPAG00000026278) #15	ENSPPAG00000035494 #16	ENSPPAG00000029280	PDE11A (ENSPPAG00000036387) #17	TTC30A (ENSPPAG00000023829) #20	TTC30B (ENSPPAG00000019313) #20	AGPS (ENSPPAG00000036868) #21	NFE2L2 (ENSPPAG00000037501) #22	HNRNPA3 (ENSPPAG00000023768) #23	ENSPPAG00000012679	MTX2 (ENSPPAG00000043265) #25	ENSPPAG00000025118	ENSPPAG00000031665 #27	ENSPPAG00000013988	HOXD3 (ENSPPAG00000031713) #28	HOXD4 (ENSPPAG00000034992) #29	ENSPPAG00000034189 #30	HOXD9 (ENSPPAG00000039242) #31	HOXD10 (ENSPPAG00000036046) #32	ENSPPAG00000028125 #33	HOXD12 (ENSPPAG00000017089) #34	ENSPPAG00000010483 #35	ENSPPAG00000039855 #36
Chimpanzee	MODERN SPECIES	15	SESTD1 (ENSPTRG00000012695)	CCDC141 (ENSPTRG00000012693)	TTN (ENSPTRG00000012691) #7	PLEKHA3 (ENSPTRG00000012690) #10	FKBP7 (ENSPTRG00000012689) #11	PJVK (ENSPTRG00000029126) #12	PRKRA (ENSPTRG00000012688) #13	OSBPL6 (ENSPTRG00000012687) #14	RBM45 (ENSPTRG00000012686) #15	ENSPTRG00000051577 #16	ENSPTRG00000046153	PDE11A (ENSPTRG00000012684) #17	TTC30A (ENSPTRG00000044238) #20	TTC30B (ENSPTRG00000048299) #20	AGPS (ENSPTRG00000012680) #21	NFE2L2 (ENSPTRG00000012677) #22	HNRNPA3 (ENSPTRG00000012676) #23	ENSPTRG00000042815	MTX2 (ENSPTRG00000012674) #25	ENSPTRG00000023851	HOXD1 (ENSPTRG00000052716) #27	ENSPTRG00000051348	HOXD3 (ENSPTRG00000012672) #28	HOXD4 (ENSPTRG00000051862) #29	HOXD8 (ENSPTRG00000012669) #30	HOXD9 (ENSPTRG00000043464) #31	HOXD10 (ENSPTRG00000012667) #32	HOXD11 (ENSPTRG00000012666) #33	HOXD12 (ENSPTRG00000012665) #34	HOXD13 (ENSPTRG00000012664) #35	EVX2 (ENSPTRG00000012663) #36
Human	MODERN SPECIES	11	CWC22 (ENSG00000163510)	ZNF385B (ENSG00000144331)	SESTD1 (ENSG00000187231)	CCDC141 (ENSG00000163492)	TTN (ENSG00000155657) #7	PLEKHA3 (ENSG00000116095) #10	FKBP7 (ENSG00000079150) #11	PJVK (ENSG00000204311) #12	PRKRA (ENSG00000180228) #13	OSBPL6 (ENSG00000079156) #14	RBM45 (ENSG00000155636) #15	PDE11A (ENSG00000128655) #17	TTC30A (ENSG00000197557) #20	TTC30B (ENSG00000196659) #20	AGPS (ENSG00000018510) #21	NFE2L2 (ENSG00000116044) #22	HNRNPA3 (ENSG00000170144) #23	MTX2 (ENSG00000128654) #25	HOXD1 (ENSG00000128645) #27	HOXD4 (ENSG00000170166) #29	HOXD3 (ENSG00000128652) #28	HOXD8 (ENSG00000175879) #30	HOXD9 (ENSG00000128709) #31	HOXD10 (ENSG00000128710) #32	HOXD11 (ENSG00000128713) #33	HOXD12 (ENSG00000170178) #34	HOXD13 (ENSG00000128714) #35	EVX2 (ENSG00000174279) #36	LNPK (ENSG00000144320)	ATP5MC3 (ENSG00000154518)	ATF2 (ENSG00000115966)
Gorilla	MODERN SPECIES	15	SESTD1 (ENSGGOG00000000846)	ENSGGOG00000014468	TTN (ENSGGOG00000007919) #7	PLEKHA3 (ENSGGOG00000012980) #10	FKBP7 (ENSGGOG00000034906) #11	PJVK (ENSGGOG00000011071) #12	PRKRA (ENSGGOG00000005754) #13	OSBPL6 (ENSGGOG00000008266) #14	RBM45 (ENSGGOG00000013981) #15	ENSGGOG00000040977 #16	ENSGGOG00000040822	PDE11A (ENSGGOG00000034968) #17	TTC30A (ENSGGOG00000009811) #20	AGPS (ENSGGOG00000012114) #21	ENSGGOG00000037000	NFE2L2 (ENSGGOG00000001231) #22	HNRNPA3 (ENSGGOG00000006130) #23	ENSGGOG00000043877	ENSGGOG00000037084	MTX2 (ENSGGOG00000044125) #25	ENSGGOG00000040237 #35	ENSGGOG00000040635 #34	ENSGGOG00000041480	HOXD1 (ENSGGOG00000001348) #27	ENSGGOG00000037792	HOXD3 (ENSGGOG00000037089) #28	HOXD4 (ENSGGOG00000042533) #29	ENSGGOG00000009898 #30	HOXD9 (ENSGGOG00000001343) #31	HOXD10 (ENSGGOG00000001341) #32	ENSGGOG00000044084
Orangutan	MODERN SPECIES	15	CWC22 (ENSPPYG00000012986)	ZNF385B (ENSPPYG00000012984)	SESTD1 (ENSPPYG00000012982)	CCDC141 (ENSPPYG00000012981)	TTN (ENSPPYG00000012980) #7	PLEKHA3 (ENSPPYG00000012979) #10	FKBP7 (ENSPPYG00000012978) #11	PJVK (ENSPPYG00000012977) #12	ENSPPYG00000012976 #13	OSBPL6 (ENSPPYG00000012975) #14	RBM45 (ENSPPYG00000012974) #15	PDE11A (ENSPPYG00000012972) #17	TTC30A (ENSPPYG00000038583) #20	TTC30B (ENSPPYG00000034101) #20	AGPS (ENSPPYG00000012969) #21	NFE2L2 (ENSPPYG00000012968) #22	HNRNPA3 (ENSPPYG00000012967) ##23	MTX2 (ENSPPYG00000012966) #25	ENSPPYG00000037565	HOXD1 (ENSPPYG00000012964) #27	HOXD3 (ENSPPYG00000012963) #28	HOXD4 (ENSPPYG00000034536) #29	HOXD8 (ENSPPYG00000037201) #30	HOXD9 (ENSPPYG00000012959) #31	HOXD10 (ENSPPYG00000012958) #32	HOXD11 (ENSPPYG00000031598) #33	HOXD12 (ENSPPYG00000012957) #34	HOXD13 (ENSPPYG00000012956) #35	EVX2 (ENSPPYG00000012955) #36	LNPK (ENSPPYG00000032630)	ATP5MC3 (ENSPPYG00000037033)
Gibbon	MODERN SPECIES	14	ENSNLEG00000006205	ENSNLEG00000006175 #7	ENSNLEG00000032978 ##9	ENSNLEG00000034742 ##7	PLEKHA3 (ENSNLEG00000006150) #10	FKBP7 (ENSNLEG00000006149) #11	PJVK (ENSNLEG00000006144) #12	ENSNLEG00000006120 #13	OSBPL6 (ENSNLEG00000006086) #14	RBM45 (ENSNLEG00000006080) #15	ENSNLEG00000030325	PDE11A (ENSNLEG00000006056) #17	TTC30A (ENSNLEG00000030979) #20	TTC30B (ENSNLEG00000033307) #20	AGPS (ENSNLEG00000006030) #21	NFE2L2 (ENSNLEG00000006029) #22	HNRNPA3 (ENSNLEG00000028401) #23	ENSNLEG00000029348	ENSNLEG00000035565	MTX2 (ENSNLEG00000006020) #25	HOXD1 (ENSNLEG00000006019) #27	ENSNLEG00000027160	HOXD3 (ENSNLEG00000006018) #28	HOXD4 (ENSNLEG00000006014) #29	ENSNLEG00000006003 #30	HOXD9 (ENSNLEG00000006011) #31	HOXD10 (ENSNLEG00000006010) #32	HOXD12 (ENSNLEG00000006006) #34	HOXD13 (ENSNLEG00000029303) #35	EVX2 (ENSNLEG00000005999) #36	LNPK (ENSNLEG00000005977)
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000155611.s	ENSGT00730000111148.s	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00940000155611.s	ENSGT00730000111148.s	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Capuchin	MODERN SPECIES	78	ZNF385B (ENSCCAG00000036046)	SESTD1 (ENSCCAG00000035636)	CCDC141 (ENSCCAG00000022986)	ENSCCAG00000031194 ##9	TTN (ENSCCAG00000034292) #7	PLEKHA3 (ENSCCAG00000021212) #10	FKBP7 (ENSCCAG00000023204) #11	PJVK (ENSCCAG00000036547) #12	PRKRA (ENSCCAG00000024400) #13	OSBPL6 (ENSCCAG00000034516) #14	RBM45 (ENSCCAG00000022783) #15	PDE11A (ENSCCAG00000023473) #17	ENSCCAG00000011267 #20	ENSCCAG00000002151 #20	AGPS (ENSCCAG00000012654) #21	NFE2L2 (ENSCCAG00000033992) #22	ENSCCAG00000032029	ENSCCAG00000020064
Bolivian squirrel monkey	MODERN SPECIES	46	SESTD1 (ENSSBOG00000028940)	CCDC141 (ENSSBOG00000020873)	TTN (ENSSBOG00000021641) #7	ENSSBOG00000032089 ##9	PLEKHA3 (ENSSBOG00000030061) #10	FKBP7 (ENSSBOG00000029794) #11	PJVK (ENSSBOG00000022982) #12	PRKRA (ENSSBOG00000012105) #13	ENSSBOG00000035006	OSBPL6 (ENSSBOG00000020436) #14	RBM45 (ENSSBOG00000005469) #15	PDE11A (ENSSBOG00000026746) #17	ENSSBOG00000018055 #20	ENSSBOG00000019156 #20	AGPS (ENSSBOG00000026720) #21	NFE2L2 (ENSSBOG00000022740) #22	HNRNPA3 (ENSSBOG00000034307) #23	MTX2 (ENSSBOG00000025795) #25	HOXD1 (ENSSBOG00000030906) #27	HOXD3 (ENSSBOG00000031894) #28	HOXD4 (ENSSBOG00000031535) #29	ENSSBOG00000029405 #30	HOXD9 (ENSSBOG00000031095) #31	HOXD10 (ENSSBOG00000020553) #32	HOXD12 (ENSSBOG00000025723) #34	HOXD13 (ENSSBOG00000032579) #35	EVX2 (ENSSBOG00000034364) #36	LNPK (ENSSBOG00000023054)	ATP5MC3 (ENSSBOG00000022688)	ATF2 (ENSSBOG00000025461)	CHN1 (ENSSBOG00000016307)
Marmoset	MODERN SPECIES	18	PLEKHA3 (ENSCJAG00000045213) #10	ENSCJAG00000021525 ##9	CCDC141 (ENSCJAG00000032110)	SESTD1 (ENSCJAG00000021532)	ZNF385B (ENSCJAG00000021534)	ENSCJAG00000084427	ENSCJAG00000047313	ENSCJAG00000072241	ENSCJAG00000021516 #15	PDE11A (ENSCJAG00000014554) #17	ENSCJAG00000081742	ENSCJAG00000081808	AGPS (ENSCJAG00000021508) #21	ENSCJAG00000021732 #20	ENSCJAG00000059559	NFE2L2 (ENSCJAG00000008340) #22	ENSCJAG00000006928 #23	ENSCJAG00000072603	MTX2 (ENSCJAG00000039174) #25	HOXD1 (ENSCJAG00000008290) #27	HOXD3 (ENSCJAG00000063715) #28	HOXD4 (ENSCJAG00000008286) #29	HOXD8 (ENSCJAG00000008284) #30	HOXD9 (ENSCJAG00000046789) #31	HOXD10 (ENSCJAG00000008269) #32	HOXD11 (ENSCJAG00000048503) #33	HOXD12 (ENSCJAG00000079626) #34	HOXD13 (ENSCJAG00000040882) #35	EVX2 (ENSCJAG00000077487) #36	LNPK (ENSCJAG00000008226)	ENSCJAG00000022954
Mas night monkey	MODERN SPECIES	1333													ENSANAG00000025414 #17	ENSANAG00000003240 #20	AGPS (ENSANAG00000019626) #21	NFE2L2 (ENSANAG00000023669) #22	HNRNPA3 (ENSANAG00000002931) #23	MTX2 (ENSANAG00000022501) #25	ENSANAG00000031061	HOXD1 (ENSANAG00000019775) #27	HOXD3 (ENSANAG00000026428) #28	HOXD4 (ENSANAG00000028028) #29	HOXD8 (ENSANAG00000026980) #30	HOXD9 (ENSANAG00000024699) #31	HOXD10 (ENSANAG00000025381) #32	HOXD11 (ENSANAG00000029678) #33	HOXD12 (ENSANAG00000008919) #34	HOXD13 (ENSANAG00000029500) #35	EVX2 (ENSANAG00000031929) #36	LNPK (ENSANAG00000019161)	ENSANAG00000021797
Tarsier	MODERN SPECIES	1208																NFE2L2 (ENSTSYG00000000155) #22	HNRNPA3 (ENSTSYG00000026299) #23
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.B ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.B ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Mouse lemur	MODERN SPECIES	30	ENSMICG00000030550 #7	ENSMICG00000043822 ##9	ENSMICG00000031280 ##7	ENSMICG00000009898 #10	FKBP7 (ENSMICG00000044765) #11	PJVK (ENSMICG00000028765) #12	PRKRA (ENSMICG00000009883) #13	OSBPL6 (ENSMICG00000003793) #14	RBM45 (ENSMICG00000003787) #15	ENSMICG00000047030 #16	PDE11A (ENSMICG00000003770) #17	ENSMICG00000030225	ENSMICG00000046051 #20	ENSMICG00000003768 #20	AGPS (ENSMICG00000003750) #21	NFE2L2 (ENSMICG00000009559) #22	ENSMICG00000027841 ##23	MTX2 (ENSMICG00000004295) #25	HOXD1 (ENSMICG00000044650) #27	HOXD3 (ENSMICG00000004286) #28	HOXD4 (ENSMICG00000043209) #29	HOXD8 (ENSMICG00000004277) #30	HOXD9 (ENSMICG00000031229) #31	HOXD10 (ENSMICG00000028373) #32	HOXD11 (ENSMICG00000048033) #33	HOXD12 (ENSMICG00000002172) #34	HOXD13 (ENSMICG00000002170) #35	EVX2 (ENSMICG00000035343) #36	LNPK (ENSMICG00000027707)	ATP5MC3 (ENSMICG00000006421)	ATF2 (ENSMICG00000006417)
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Greater bamboo lemur	MODERN SPECIES	315	SESTD1 (ENSPSMG00000006407)	CCDC141 (ENSPSMG00000006422)	TTN (ENSPSMG00000006740) #7	ENSPSMG00000006846 ##9	ENSPSMG00000006848 ##9	PLEKHA3 (ENSPSMG00000006866) #10	FKBP7 (ENSPSMG00000006879) #11	PJVK (ENSPSMG00000006888) #12	PRKRA (ENSPSMG00000006915) #13	OSBPL6 (ENSPSMG00000007245) #14	RBM45 (ENSPSMG00000007558) #15	ENSPSMG00000007568 #16	PDE11A (ENSPSMG00000007629) #17	ENSPSMG00000007645 #20	AGPS (ENSPSMG00000007683) #21	NFE2L2 (ENSPSMG00000007760) #22	ENSPSMG00000007769 ##23	TRIM37 (ENSPSMG00000008046)	ENSPSMG00000008167	ENSPSMG00000008202
Coquerels sifaka	MODERN SPECIES	478	CCDC141 (ENSPCOG00000001783)	ENSPCOG00000025904 #7	ENSPCOG00000024634 ##9	ENSPCOG00000021252 #7	PLEKHA3 (ENSPCOG00000020560) #10	FKBP7 (ENSPCOG00000018941) #11	PJVK (ENSPCOG00000022935) #12	PRKRA (ENSPCOG00000018812) #13	OSBPL6 (ENSPCOG00000010731) #14	ENSPCOG00000005659	RBM45 (ENSPCOG00000021526) #15	ENSPCOG00000028806 #16	ENSPCOG00000025842	PDE11A (ENSPCOG00000025830) #17	AGPS (ENSPCOG00000018665) #21	NFE2L2 (ENSPCOG00000007362) #22	MTX2 (ENSPCOG00000025077) #25	HOXD1 (ENSPCOG00000024445) #27	HOXD3 (ENSPCOG00000017195) #28	HOXD4 (ENSPCOG00000018337) #29	HOXD8 (ENSPCOG00000024233) #30	HOXD9 (ENSPCOG00000026809) #31	HOXD10 (ENSPCOG00000023637) #32	HOXD11 (ENSPCOG00000015055) #33	HOXD12 (ENSPCOG00000022036) #34	HOXD13 (ENSPCOG00000018735) #35	EVX2 (ENSPCOG00000022416) #36	LNPK (ENSPCOG00000026983)	ATP5MC3 (ENSPCOG00000016374)	ATF2 (ENSPCOG00000025416)	CHN1 (ENSPCOG00000018830)
Bushbaby	MODERN SPECIES	163	ZNF385B (ENSOGAG00000008520)	SESTD1 (ENSOGAG00000011106)	CCDC141 (ENSOGAG00000003186)	ENSOGAG00000025603 #7	ENSOGAG00000029563 ##9	PLEKHA3 (ENSOGAG00000002724) #10	FKBP7 (ENSOGAG00000002721) #11	PJVK (ENSOGAG00000033780) #12	PRKRA (ENSOGAG00000013971) #13	OSBPL6 (ENSOGAG00000013765) #14	RBM45 (ENSOGAG00000015195) #15	ENSOGAG00000026648 #16	ENSOGAG00000013191	ENSOGAG00000013189 #20	AGPS (ENSOGAG00000013184) #21	NFE2L2 (ENSOGAG00000034393) #22	ENSOGAG00000028132 ##23	ENSOGAG00000032690	MTX2 (ENSOGAG00000016422) #25	HOXD1 (ENSOGAG00000015712) #27	HOXD3 (ENSOGAG00000015710) #28	HOXD4 (ENSOGAG00000029168) #29	HOXD8 (ENSOGAG00000015707) #30	HOXD9 (ENSOGAG00000015697) #31	HOXD10 (ENSOGAG00000015694) #32	HOXD11 (ENSOGAG00000029520) #33	HOXD12 (ENSOGAG00000015689) #34	HOXD13 (ENSOGAG00000027055) #35	EVX2 (ENSOGAG00000025378) #36	LNPK (ENSOGAG00000030372)	ENSOGAG00000030354
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000182892.a.a.b #22
Hedgehog	MODERN SPECIES	11801																NFE2L2 (ENSEEUG00000011243) #22
Common shrew	MODERN SPECIES	12665																NFE2L2 (ENSSARG00000010915) #22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Cetacea	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Odontoceti	ANCESTRAL SPECIES	13	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263523.L ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##23	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263523.L ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00390000008142.t	ENSGT00940000154298.a.a
Monodontidae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a.hb.b ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00950000182834.A.a.a.t	ENSGT00390000008142.t
Narwhal	MODERN SPECIES	302	ENSMMNG00015008454	TTN (ENSMMNG00015009913) #7	PLEKHA3 (ENSMMNG00015013955) #10	ENSMMNG00015013983	FKBP7 (ENSMMNG00015013990) #11	PJVK (ENSMMNG00015014003) #12	PRKRA (ENSMMNG00015014019) #13	OSBPL6 (ENSMMNG00015014111) #14	RBM45 (ENSMMNG00015014220) #15	ENSMMNG00015014238 #16	PDE11A (ENSMMNG00015014260) #17	ENSMMNG00015014296	ENSMMNG00015007201 #20	ENSMMNG00015007232 #20	AGPS (ENSMMNG00015007255) #21	NFE2L2 (ENSMMNG00015007306) #22	ENSMMNG00015007339 ##23	MTX2 (ENSMMNG00015007394) #25	HOXD1 (ENSMMNG00015007440) #27	HOXD3 (ENSMMNG00015007460) #28	HOXD4 (ENSMMNG00015007477) #29	HOXD8 (ENSMMNG00015007526) #30	HOXD9 (ENSMMNG00015007556) #31	HOXD10 (ENSMMNG00015007571) #32	ENSMMNG00015007589 #33	HOXD12 (ENSMMNG00015007598) #34	HOXD13 (ENSMMNG00015007609) #35	EVX2 (ENSMMNG00015007622) #36	LNPK (ENSMMNG00015007647)	ENSMMNG00015007684	ENSMMNG00015007699
Beluga whale	MODERN SPECIES	84	ENSDLEG00000009909 ##9	ENSDLEG00000009890 #8	ENSDLEG00000009862 #7	ENSDLEG00000009851	PLEKHA3 (ENSDLEG00000009842) #10	FKBP7 (ENSDLEG00000009831) #11	PJVK (ENSDLEG00000009801) #12	PRKRA (ENSDLEG00000009768) #13	OSBPL6 (ENSDLEG00000009570) #14	RBM45 (ENSDLEG00000009507) #15	ENSDLEG00000009493 #16	ENSDLEG00000009481 #17	ENSDLEG00000009469 #20	ENSDLEG00000009463 #20	AGPS (ENSDLEG00000009335) #21	NFE2L2 (ENSDLEG00000009266) #22	ENSDLEG00000009227 ##23	MTX2 (ENSDLEG00000009199) #25	HOXD1 (ENSDLEG00000009181) #27	HOXD3 (ENSDLEG00000009171) #28	HOXD4 (ENSDLEG00000009166) #29	HOXD8 (ENSDLEG00000009104) #30	HOXD9 (ENSDLEG00000009091) #31	HOXD10 (ENSDLEG00000009076) #32	ENSDLEG00000009052 #33	HOXD12 (ENSDLEG00000009038) #34	HOXD13 (ENSDLEG00000009014) #35	EVX2 (ENSDLEG00000008943) #36	LNPK (ENSDLEG00000008885)	ENSDLEG00000008854	ENSDLEG00000008837
Vaquita	MODERN SPECIES	18	ENSPSNG00000006659 ##9	ENSPSNG00000006702 ##9	ENSPSNG00000006762 ##7	PLEKHA3 (ENSPSNG00000006784) #10	ENSPSNG00000006805	FKBP7 (ENSPSNG00000006918) #11	PJVK (ENSPSNG00000006966) #12	PRKRA (ENSPSNG00000007030) #13	OSBPL6 (ENSPSNG00000007225) #14	RBM45 (ENSPSNG00000007527) #15	ENSPSNG00000007564 #16	PDE11A (ENSPSNG00000007618) #17	ENSPSNG00000007902 #20	ENSPSNG00000005284 #20	AGPS (ENSPSNG00000005315) #21	NFE2L2 (ENSPSNG00000005384) #22	ENSPSNG00000005439 ##23	MTX2 (ENSPSNG00000005488) #25	HOXD1 (ENSPSNG00000005524) #27	HOXD3 (ENSPSNG00000005539) #28	HOXD4 (ENSPSNG00000005556) #29	HOXD8 (ENSPSNG00000005602) #30	HOXD9 (ENSPSNG00000005639) #31	HOXD10 (ENSPSNG00000005654) #32	HOXD11 (ENSPSNG00000005666) #33	HOXD12 (ENSPSNG00000005695) #34	HOXD13 (ENSPSNG00000005715) #35	EVX2 (ENSPSNG00000005734) #36	LNPK (ENSPSNG00000005786)	ENSPSNG00000005846	ENSPSNG00000005869
Dolphin	MODERN SPECIES	4341																NFE2L2 (ENSTTRG00000014247) #22	ENSTTRG00000014225 ##23
Sperm whale	MODERN SPECIES	11	ENSPCTG00005009719 ##9	ENSPCTG00005009648 ##9	ENSPCTG00005009577 ##9	TTN (ENSPCTG00005004468) #7	PLEKHA3 (ENSPCTG00005003988) #10	FKBP7 (ENSPCTG00005003977) #11	PRKRA (ENSPCTG00005003951) #13	PJVK (ENSPCTG00005003934) #12	OSBPL6 (ENSPCTG00005003757) #14	RBM45 (ENSPCTG00005003694) #15	ENSPCTG00005003686 #16	PDE11A (ENSPCTG00005003616) #17	ENSPCTG00005003599 #20	ENSPCTG00005003590 #20	AGPS (ENSPCTG00005003530) #21	NFE2L2 (ENSPCTG00005003486) #22	ENSPCTG00005003466 ##23	MTX2 (ENSPCTG00005007528) #25	HOXD1 (ENSPCTG00005007516) #27	HOXD3 (ENSPCTG00005007508) #28	HOXD4 (ENSPCTG00005007493) #29	HOXD8 (ENSPCTG00005007418) #30	HOXD9 (ENSPCTG00005007399) #31	HOXD10 (ENSPCTG00005007393) #32	ENSPCTG00005007381 #33	HOXD12 (ENSPCTG00005007367) #34	HOXD13 (ENSPCTG00005007354) #35	EVX2 (ENSPCTG00005007330) #36	LNPK (ENSPCTG00005007293)	ATP5MC3 (ENSPCTG00005007202)	ATF2 (ENSPCTG00005007004)
Blue whale	MODERN SPECIES	18	ENSBMSG00010006553 ##9	ENSBMSG00010006534 ##7	ENSBMSG00010006522	ENSBMSG00010006506 #10	FKBP7 (ENSBMSG00010006490) #11	PJVK (ENSBMSG00010006471) #12	PRKRA (ENSBMSG00010006442) #13	OSBPL6 (ENSBMSG00010006347) #14	RBM45 (ENSBMSG00010006279) #15	ENSBMSG00010006266 #16	ENSBMSG00010006255	PDE11A (ENSBMSG00010006216) #17	ENSBMSG00010006199 #20	ENSBMSG00010006193 #20	AGPS (ENSBMSG00010006175) #21	NFE2L2 (ENSBMSG00010006157) #22	ENSBMSG00010006149 ##23	MTX2 (ENSBMSG00010006100) #25	HOXD1 (ENSBMSG00010006055) #27	HOXD3 (ENSBMSG00010006046) #28	HOXD4 (ENSBMSG00010006036) #29	HOXD8 (ENSBMSG00010006022) #30	HOXD9 (ENSBMSG00010006014) #31	HOXD10 (ENSBMSG00010006002) #32	HOXD11 (ENSBMSG00010005993) #33	HOXD12 (ENSBMSG00010005987) #34	HOXD13 (ENSBMSG00010005980) #35	EVX2 (ENSBMSG00010005974) #36	LNPK (ENSBMSG00010005955)	ATP5MC3 (ENSBMSG00010005937)	ATF2 (ENSBMSG00010005883)
Pecora	ANCESTRAL SPECIES	24	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Percora_a	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Bovidae	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Bovinae	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000153299.c.a.b.u.a	ENSGT00940000154298.a.a
Bos	ANCESTRAL SPECIES	6	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00390000010116.fc.b #20	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #23	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000153299.c.a.b.u.a
Bos_a	ANCESTRAL SPECIES	4	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000153299.c.a.b.u.a	ENSGT00940000154298.a.a
Wild yak	MODERN SPECIES	1208								OSBPL6 (ENSBMUG00000024336) #14	ENSBMUG00000024374 #16	RBM45 (ENSBMUG00000024394) #15	PDE11A (ENSBMUG00000024453) #17	ENSBMUG00000024477	ENSBMUG00000024480 #20	ENSBMUG00000024488 #20	AGPS (ENSBMUG00000024509) #21	NFE2L2 (ENSBMUG00000024519) #22	ENSBMUG00000024527 ##23
Domestic yak	MODERN SPECIES	11	PLEKHA3 (ENSBGRG00000000848) #10	FKBP7 (ENSBGRG00000000806) #11	PJVK (ENSBGRG00000000796) #12	PRKRA (ENSBGRG00000000775) #13	OSBPL6 (ENSBGRG00000000437) #14	ENSBGRG00000000374	RBM45 (ENSBGRG00000000341) #15	ENSBGRG00000000328 #16	ENSBGRG00000000319	ENSBGRG00000000317	PDE11A (ENSBGRG00000000288) #17	ENSBGRG00000000270 #20	ENSBGRG00000000264	ENSBGRG00000000256 #20	AGPS (ENSBGRG00000000237) #21	NFE2L2 (ENSBGRG00000000213) #22	ENSBGRG00000000202 #23	MTX2 (ENSBGRG00000017363) #25	HOXD1 (ENSBGRG00000017303) #27	HOXD3 (ENSBGRG00000017255) #28	ENSBGRG00000017167 #29	HOXD8 (ENSBGRG00000017045) #30	HOXD9 (ENSBGRG00000017014) #31	HOXD10 (ENSBGRG00000016979) #32	HOXD11 (ENSBGRG00000016923) #33	HOXD12 (ENSBGRG00000016890) #34	HOXD13 (ENSBGRG00000016836) #35	EVX2 (ENSBGRG00000016780) #36	LNPK (ENSBGRG00000016182)	ENSBGRG00000016132	ATP5MC3 (ENSBGRG00000016024)
Bos_b	ANCESTRAL SPECIES	3	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT01100000263474.a.b.b.f.g.a.b	ENSGT00390000010116.fc.b #20	ENSGT01100000263480.a.a.a.b.a.a.a.a.b.a	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.tb.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT01030000234916.g.b	ENSGT00390000001859	ENSGT00940000154298.a.a
Cow	MODERN SPECIES	11	ENSBTAG00000053974 ##9	ENSBTAG00000052348 #8	ENSBTAG00000052709 #9	PLEKHA3 (ENSBTAG00000001098) #10	FKBP7 (ENSBTAG00000001097) #11	PJVK (ENSBTAG00000033254) #12	PRKRA (ENSBTAG00000001096) #13	OSBPL6 (ENSBTAG00000014405) #14	RBM45 (ENSBTAG00000006168) #15	CYCT (ENSBTAG00000039522) #16	PDE11A (ENSBTAG00000016396) #17	ENSBTAG00000049860	TTC30A (ENSBTAG00000027694) #20	TTC30B (ENSBTAG00000027696) #20	AGPS (ENSBTAG00000009897) #21	NFE2L2 (ENSBTAG00000019255) #22	HNRNPA3 (ENSBTAG00000021580) #23	MTX2 (ENSBTAG00000006693) #25	HOXD1 (ENSBTAG00000015840) #27	HOXD3 (ENSBTAG00000004835) #28	HOXD4 (ENSBTAG00000039581) #29	HOXD8 (ENSBTAG00000049845) #30	HOXD9 (ENSBTAG00000016033) #31	HOXD10 (ENSBTAG00000016030) #32	HOXD11 (ENSBTAG00000033330) #33	HOXD12 (ENSBTAG00000004314) #34	HOXD13 (ENSBTAG00000004313) #35	EVX2 (ENSBTAG00000049537) #36	ENSBTAG00000002009	ENSBTAG00000050237	LNPK (ENSBTAG00000018061)
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005029567 ##9	ENSBIXG00005029587 #8	ENSBIXG00005029747 #9	PLEKHA3 (ENSBIXG00005029758) #10	FKBP7 (ENSBIXG00005029776) #11	PJVK (ENSBIXG00005029785) #12	PRKRA (ENSBIXG00005029821) #13	OSBPL6 (ENSBIXG00005029906) #14	RBM45 (ENSBIXG00005030103) #15	ENSBIXG00005030117 #16	PDE11A (ENSBIXG00005030175) #17	ENSBIXG00005030242 #20	ENSBIXG00005030245	ENSBIXG00005030257 #20	AGPS (ENSBIXG00005030278) #21	NFE2L2 (ENSBIXG00005030317) #22	HNRNPA3 (ENSBIXG00005030333) #23	ENSBIXG00005030352	ENSBIXG00005030356	MTX2 (ENSBIXG00005030400) #25	HOXD1 (ENSBIXG00005030413) #27	HOXD3 (ENSBIXG00005030419) #28	HOXD8 (ENSBIXG00005030431) #30	HOXD9 (ENSBIXG00005030437) #31	HOXD10 (ENSBIXG00005005289) #32	HOXD11 (ENSBIXG00005001515) #33	HOXD12 (ENSBIXG00005001517) #34	HOXD13 (ENSBIXG00005001519) #35	EVX2 (ENSBIXG00005005288) #36	ENSBIXG00005029246	ENSBIXG00005029245
American bison	MODERN SPECIES	3320	ENSBBBG00000018488 ##9	ENSBBBG00000018480 #8	ENSBBBG00000018475 #9	PLEKHA3 (ENSBBBG00000004536) #10	FKBP7 (ENSBBBG00000018464) #11	PJVK (ENSBBBG00000004525) #12	PRKRA (ENSBBBG00000018426) #13	OSBPL6 (ENSBBBG00000018398) #14	RBM45 (ENSBBBG00000004406) #15	ENSBBBG00000017912 #16	PDE11A (ENSBBBG00000017894) #17	ENSBBBG00000017839	ENSBBBG00000017832 #20	ENSBBBG00000007701 #20	AGPS (ENSBBBG00000017817) #21	NFE2L2 (ENSBBBG00000017780) #22	ENSBBBG00000007269 #23	MTX2 (ENSBBBG00000017733) #25	ENSBBBG00000017700	ENSBBBG00000004376	HOXD1 (ENSBBBG00000017690) #27	HOXD3 (ENSBBBG00000017682) #28	HOXD4 (ENSBBBG00000017669) #29	HOXD8 (ENSBBBG00000017657) #30	HOXD9 (ENSBBBG00000017650) #31	HOXD10 (ENSBBBG00000006962) #32	HOXD12 (ENSBBBG00000017645) #34	HOXD13 (ENSBBBG00000017641) #35	ENSBBBG00000017638	ENSBBBG00000017634	LNPK (ENSBBBG00000017627)
Caprinae	ANCESTRAL SPECIES	5	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00390000010116.fc.a #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020020356 #7	ENSOARG00020020425 ##9	ENSOARG00020020485 ##9	ENSOARG00020020514 #9	PLEKHA3 (ENSOARG00020020544) #10	FKBP7 (ENSOARG00020020704) #11	PJVK (ENSOARG00020020753) #12	PRKRA (ENSOARG00020020855) #13	OSBPL6 (ENSOARG00020020986) #14	RBM45 (ENSOARG00020022028) #15	ENSOARG00020022078 #16	PDE11A (ENSOARG00020022115) #17	ENSOARG00020022364 #20	ENSOARG00020022373 #20	AGPS (ENSOARG00020022410) #21	NFE2L2 (ENSOARG00020022726) #22	HNRNPA3 (ENSOARG00020000123) #23	MTX2 (ENSOARG00020000188) #25	HOXD1 (ENSOARG00020000237) #27	HOXD3 (ENSOARG00020000257) #28	HOXD4 (ENSOARG00020000275) #29	HOXD8 (ENSOARG00020000297) #30	HOXD9 (ENSOARG00020000321) #31	HOXD10 (ENSOARG00020000330) #32	hoxd11 (ENSOARG00020000346) #33	HOXD12 (ENSOARG00020000357) #34	HOXD13 (ENSOARG00020000373) #35	EVX2 (ENSOARG00020000381) #36	ENSOARG00020000394	LNPK (ENSOARG00020000416)	ATP5MC3 (ENSOARG00020000538)
Goat	MODERN SPECIES	11	ENSCHIG00000016308 ##9	ENSCHIG00000027063 ##9	ENSCHIG00000018472 #9	PLEKHA3 (ENSCHIG00000019515) #10	FKBP7 (ENSCHIG00000017480) #11	PJVK (ENSCHIG00000013011) #12	PRKRA (ENSCHIG00000015333) #13	OSBPL6 (ENSCHIG00000008898) #14	ENSCHIG00000017164	RBM45 (ENSCHIG00000010687) #15	ENSCHIG00000026156 #16	PDE11A (ENSCHIG00000016852) #17	ENSCHIG00000011716 #20	ENSCHIG00000011750 #20	AGPS (ENSCHIG00000015256) #21	NFE2L2 (ENSCHIG00000026055) #22	ENSCHIG00000015430 #23	MTX2 (ENSCHIG00000008892) #25	HOXD1 (ENSCHIG00000017515) #27	HOXD3 (ENSCHIG00000011624) #28	HOXD4 (ENSCHIG00000019702) #29	HOXD8 (ENSCHIG00000013371) #30	HOXD9 (ENSCHIG00000023245) #31	HOXD10 (ENSCHIG00000011771) #32	HOXD11 (ENSCHIG00000026087) #33	HOXD12 (ENSCHIG00000014734) #34	HOXD13 (ENSCHIG00000009994) #35	EVX2 (ENSCHIG00000026644) #36	ENSCHIG00000004992	ENSCHIG00000025787	LNPK (ENSCHIG00000012313)
Siberian musk deer	MODERN SPECIES	342								OSBPL6 (ENSMMSG00000006219) #14	RBM45 (ENSMMSG00000006596) #15	ENSMMSG00000006624 #16	PDE11A (ENSMMSG00000006654) #17	ENSMMSG00000006819 #20	ENSMMSG00000006854 #20	AGPS (ENSMMSG00000006894) #21	ENSMMSG00000006963	NFE2L2 (ENSMMSG00000006992) #22	ENSMMSG00000007068 ##23	MTX2 (ENSMMSG00000007226) #25	HOXD1 (ENSMMSG00000007322) #27	HOXD3 (ENSMMSG00000007343) #28	HOXD4 (ENSMMSG00000007365) #29	HOXD8 (ENSMMSG00000007407) #30	HOXD9 (ENSMMSG00000007480) #31	HOXD10 (ENSMMSG00000007495) #32	HOXD11 (ENSMMSG00000007513) #33	HOXD12 (ENSMMSG00000007530) #34	HOXD13 (ENSMMSG00000007541) #35	EVX2 (ENSMMSG00000007555) #36	LNPK (ENSMMSG00000007582)	ENSMMSG00000007642	ATF2 (ENSMMSG00000007713)
Yarkand deer	MODERN SPECIES	26	ENSCHYG00000023401 ##9	ENSCHYG00000023464 ##9	ENSCHYG00000023539 #8	PLEKHA3 (ENSCHYG00000023579) #10	FKBP7 (ENSCHYG00000023614) #11	PJVK (ENSCHYG00000023643) #12	PRKRA (ENSCHYG00000023726) #13	OSBPL6 (ENSCHYG00000023926) #14	RBM45 (ENSCHYG00000024364) #15	ENSCHYG00000024431	ENSCHYG00000024445 #16	PDE11A (ENSCHYG00000024466) #17	ENSCHYG00000024550 #20	ENSCHYG00000024559 #20	AGPS (ENSCHYG00000024578) #21	NFE2L2 (ENSCHYG00000024719) #22	ENSCHYG00000015038 #23	ENSCHYG00000015305	MTX2 (ENSCHYG00000015392) #25	HOXD1 (ENSCHYG00000015562) #27	HOXD3 (ENSCHYG00000015650) #28	HOXD4 (ENSCHYG00000015683) #29	HOXD8 (ENSCHYG00000015741) #30	HOXD9 (ENSCHYG00000015808) #31	HOXD10 (ENSCHYG00000015831) #32	ENSCHYG00000015846	HOXD12 (ENSCHYG00000015954) #34	HOXD13 (ENSCHYG00000015985) #35	LNPK (ENSCHYG00000016125)	ENSCHYG00000016391	ENSCHYG00000016417
Camelidae	ANCESTRAL SPECIES	16	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116.fc.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Alpaca	MODERN SPECIES	3699												PDE11A (ENSVPAG00000005129) #17	ENSVPAG00000005128 #20	ENSVPAG00000005127 #20	AGPS (ENSVPAG00000005122) #21	NFE2L2 (ENSVPAG00000005117) #22
Arabian camel	MODERN SPECIES	31	ENSCDRG00005005297 ##9	ENSCDRG00005005276 ##9	ENSCDRG00005005255 ##9	TTN (ENSCDRG00005003286) #7	PLEKHA3 (ENSCDRG00005003046) #10	FKBP7 (ENSCDRG00005003026) #11	PJVK (ENSCDRG00005003020) #12	PRKRA (ENSCDRG00005002991) #13	ENSCDRG00005002982	OSBPL6 (ENSCDRG00005002764) #14	RBM45 (ENSCDRG00005002693) #15	PDE11A (ENSCDRG00005002676) #17	ENSCDRG00005002663 #20	ENSCDRG00005002654 #20	AGPS (ENSCDRG00005002612) #21	NFE2L2 (ENSCDRG00005002588) #22	HNRNPA3 (ENSCDRG00005002567) #23	MTX2 (ENSCDRG00005002532) #25	HOXD3 (ENSCDRG00005002512) #28	HOXD4 (ENSCDRG00005002497) #29	HOXD8 (ENSCDRG00005002477) #30	HOXD9 (ENSCDRG00005002467) #31	HOXD10 (ENSCDRG00005002456) #32	HOXD11 (ENSCDRG00005002440) #33	HOXD12 (ENSCDRG00005002432) #34	HOXD13 (ENSCDRG00005002411) #35	EVX2 (ENSCDRG00005002358) #36	LNPK (ENSCDRG00005002325)	ATP5MC3 (ENSCDRG00005002307)	ATF2 (ENSCDRG00005002159)	CHN1 (ENSCDRG00005002091)
Suina	ANCESTRAL SPECIES	3	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000010491.kb.a	ENSGT00390000001859	ENSGT00940000154298.a.a
Chacoan peccary	MODERN SPECIES	88	SESTD1 (ENSCWAG00000004249)	ENSCWAG00000004196	ENSCWAG00000004147 ##9	ENSCWAG00000004104 ##9	ENSCWAG00000004059 ##9	TTN (ENSCWAG00000002022) #7	PLEKHA3 (ENSCWAG00000001517) #10	FKBP7 (ENSCWAG00000001502) #11	PJVK (ENSCWAG00000001480) #12	PRKRA (ENSCWAG00000001459) #13	OSBPL6 (ENSCWAG00000001227) #14	RBM45 (ENSCWAG00000001104) #15	ENSCWAG00000001084 #16	PDE11A (ENSCWAG00000001000) #17	AGPS (ENSCWAG00000000957) #21	NFE2L2 (ENSCWAG00000000916) #22	HNRNPA3 (ENSCWAG00000000880) #23	MTX2 (ENSCWAG00000000848) #25	HOXD1 (ENSCWAG00000000831) #27	HOXD3 (ENSCWAG00000000815) #28	HOXD4 (ENSCWAG00000000799) #29	HOXD8 (ENSCWAG00000000766) #30	HOXD9 (ENSCWAG00000000750) #31	HOXD10 (ENSCWAG00000000737) #32	HOXD11 (ENSCWAG00000000728) #33	HOXD12 (ENSCWAG00000000716) #34	HOXD13 (ENSCWAG00000000704) #35	EVX2 (ENSCWAG00000000686) #36	ENSCWAG00000000677	LNPK (ENSCWAG00000000637)	ENSCWAG00000000620
Pig	MODERN SPECIES	6	ENSSSCG00000061723 #7	ENSSSCG00000042430 ##9	ENSSSCG00000053021 ##9	ENSSSCG00000034677 ##9	ENSSSCG00000038561 ##9	ENSSSCG00000036052 ##7	PLEKHA3 (ENSSSCG00000049025) #10	FKBP7 (ENSSSCG00000015999) #11	PJVK (ENSSSCG00000015998) #12	PRKRA (ENSSSCG00000038254) #13	OSBPL6 (ENSSSCG00000023133) #14	RBM45 (ENSSSCG00000015996) #15	ENSSSCG00000047774	PDE11A (ENSSSCG00000038903) #17	AGPS (ENSSSCG00000023983) #21	NFE2L2 (ENSSSCG00000015987) #22	ENSSSCG00000015988 ##23	MTX2 (ENSSSCG00000022222) #25	HOXD1 (ENSSSCG00000015986) #27	HOXD3 (ENSSSCG00000015985) #28	HOXD4 (ENSSSCG00000015984) #29	HOXD8 (ENSSSCG00000040349) #30	HOXD9 (ENSSSCG00000015982) #31	HOXD10 (ENSSSCG00000015981) #32	HOXD11 (ENSSSCG00000034741) #33	HOXD12 (ENSSSCG00000015980) #34	HOXD13 (ENSSSCG00000057890) #35	EVX2 (ENSSSCG00000023146) #36	ENSSSCG00000053760	ENSSSCG00000039002	LNPK (ENSSSCG00000015976)
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Greater horseshoe bat	MODERN SPECIES	26	ZNF385B (ENSRFEG00010018087)	SESTD1 (ENSRFEG00010018265)	CCDC141 (ENSRFEG00010018317)	ENSRFEG00010020094 ##9	PLEKHA3 (ENSRFEG00010022147) #10	FKBP7 (ENSRFEG00010022148) #11	DFNB59 (ENSRFEG00010022149) #12	PRKRA (ENSRFEG00010022150) #13	OSBPL6 (ENSRFEG00010022151) #14	RBM45 (ENSRFEG00010022152) #15	ENSRFEG00010022153 #16	PDE11A (ENSRFEG00010022154) #17	ENSRFEG00010022156 #20	ENSRFEG00010022157 #20	ENSRFEG00010022158 #21	NFE2L2 (ENSRFEG00010022160) #22	ENSRFEG00010022161 ##23	MTX2 (ENSRFEG00010022163) #25	HOXD1 (ENSRFEG00010022164) #27	HOXD3 (ENSRFEG00010022165) #28	HOXD4 (ENSRFEG00010022166) #29	HOXD8 (ENSRFEG00010022168) #30	HOXD9 (ENSRFEG00010022169) #31	HOXD10 (ENSRFEG00010022170) #32	HOXD11 (ENSRFEG00010022171) #33	HOXD12 (ENSRFEG00010022172) #34	HOXD13 (ENSRFEG00010022173) #35	EVX2 (ENSRFEG00010000230) #36	LNPK (ENSRFEG00010000270)	ENSRFEG00010000353	ATF2 (ENSRFEG00010000479)
Microbat	MODERN SPECIES	942	TTN (ENSMLUG00000005832) #7	ENSMLUG00000024664 ##9	PLEKHA3 (ENSMLUG00000005823) #10	FKBP7 (ENSMLUG00000005816) #11	PJVK (ENSMLUG00000005814) #12	ENSMLUG00000005810 #13	ENSMLUG00000022423	OSBPL6 (ENSMLUG00000005787) #14	RBM45 (ENSMLUG00000005782) #15	PDE11A (ENSMLUG00000005135) #17	ENSMLUG00000028755	ENSMLUG00000005133 #20	ENSMLUG00000005126 #20	AGPS (ENSMLUG00000005113) #21	ENSMLUG00000025480	NFE2L2 (ENSMLUG00000003909) #22	ENSMLUG00000003906 ##23	MTX2 (ENSMLUG00000015966) #25	ENSMLUG00000029447 #27	HOXD3 (ENSMLUG00000012510) #28	HOXD4 (ENSMLUG00000012508) #29	HOXD8 (ENSMLUG00000028864) #30	HOXD10 (ENSMLUG00000007048) #32	HOXD11 (ENSMLUG00000007030) #33	HOXD12 (ENSMLUG00000007009) #34	HOXD13 (ENSMLUG00000006997) #35	EVX2 (ENSMLUG00000006989) #36	ENSMLUG00000022478	LNPK (ENSMLUG00000006972)	ENSMLUG00000012822	ATF2 (ENSMLUG00000015718)
Megabat	MODERN SPECIES	2191											RBM45 (ENSPVAG00000010390) #15	PDE11A (ENSPVAG00000010389) #17	ENSPVAG00000010388 #20	ENSPVAG00000010387 #20	AGPS (ENSPVAG00000010384) #21	NFE2L2 (ENSPVAG00000010382) #22	ENSPVAG00000010380 ##23
Equus	ANCESTRAL SPECIES	18	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000005569.x.a.a.b	ENSGT00390000001859	ENSGT00940000154298.a.a
Donkey	MODERN SPECIES	24	CCDC141 (ENSEASG00005022349)	TTN (ENSEASG00005024097) #7	ENSEASG00005036015 ##9	ENSEASG00005024821 #8	PLEKHA3 (ENSEASG00005022419) #10	FKBP7 (ENSEASG00005022426) #11	PJVK (ENSEASG00005022430) #12	PRKRA (ENSEASG00005022436) #13	OSBPL6 (ENSEASG00005022455) #14	RBM45 (ENSEASG00005022475) #15	ENSEASG00005026887 #16	PDE11A (ENSEASG00005022489) #17	ENSEASG00005028303 #20	AGPS (ENSEASG00005022514) #21	ENSEASG00005026944 #20	NFE2L2 (ENSEASG00005028739) #22	HNRNPA3 (ENSEASG00005022530) #23	MTX2 (ENSEASG00005022537) #25	HOXD1 (ENSEASG00005030887) #27	HOXD3 (ENSEASG00005022544) #28	HOXD4 (ENSEASG00005024806) #29	HOXD8 (ENSEASG00005033905) #30	HOXD9 (ENSEASG00005023994) #31	HOXD10 (ENSEASG00005022552) #32	HOXD11 (ENSEASG00005030904) #33	HOXD12 (ENSEASG00005022555) #34	HOXD13 (ENSEASG00005029242) #35	EVX2 (ENSEASG00005022562) #36	ENSEASG00005022564	LNPK (ENSEASG00005022567)	ATP5MC3 (ENSEASG00005022573)
Horse	MODERN SPECIES	9	SESTD1 (ENSECAG00000011753)	CCDC141 (ENSECAG00000007805)	TTN (ENSECAG00000042020) #7	PLEKHA3 (ENSECAG00000010715) #10	FKBP7 (ENSECAG00000008092) #11	PJVK (ENSECAG00000007310) #12	PRKRA (ENSECAG00000024263) #13	OSBPL6 (ENSECAG00000020078) #14	RBM45 (ENSECAG00000017129) #15	CYCT (ENSECAG00000016170) #16	ENSECAG00000057854	PDE11A (ENSECAG00000004445) #17	ENSECAG00000000927 #20	ENSECAG00000051775	AGPS (ENSECAG00000008695) #21	NFE2L2 (ENSECAG00000005675) #22	HNRNPA3 (ENSECAG00000059976) #23	MTX2 (ENSECAG00000022464) #25	HOXD1 (ENSECAG00000035437) #27	HOXD3 (ENSECAG00000022129) #28	HOXD4 (ENSECAG00000038429) #29	HOXD8 (ENSECAG00000021980) #30	HOXD9 (ENSECAG00000021845) #31	HOXD10 (ENSECAG00000020599) #32	HOXD11 (ENSECAG00000003045) #33	HOXD13 (ENSECAG00000020388) #35	EVX2 (ENSECAG00000019796) #36	ENSECAG00000043913	LNPK (ENSECAG00000008534)	ATP5MC3 (ENSECAG00000008514)	ATF2 (ENSECAG00000018723)
Carnivora	ANCESTRAL SPECIES	17	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Felidae	ANCESTRAL SPECIES	15	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.wb #20	ENSGT00390000010116.vb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Panthera	ANCESTRAL SPECIES	9	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.wb #20	ENSGT00390000010116.vb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Tiger	MODERN SPECIES	43																NFE2L2 (ENSPTIG00000007874) #22	HNRNPA3 (ENSPTIG00000008598) #23	MTX2 (ENSPTIG00000011503) #25	ENSPTIG00000013485	HOXD4 (ENSPTIG00000015199) #29	ENSPTIG00000015581 #30	ENSPTIG00000006835 #31	HOXD10 (ENSPTIG00000015771) #32	HOXD13 (ENSPTIG00000016212) #35	LNPK (ENSPTIG00000016532)	ATP5MC3 (ENSPTIG00000016881)	ATF2 (ENSPTIG00000017517)	CHN1 (ENSPTIG00000006887)	CHRNA1 (ENSPTIG00000012090)	WIPF1 (ENSPTIG00000016801)	GPR155 (ENSPTIG00000018965)
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.wb #20	ENSGT00390000010116.vb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
lion	MODERN SPECIES	8	CWC22 (ENSPLOG00000004688)	ZNF385B (ENSPLOG00000004710)	SESTD1 (ENSPLOG00000004731)	CCDC141 (ENSPLOG00000004750)	ENSPLOG00000007181 ##9	PLEKHA3 (ENSPLOG00000021313) #10	FKBP7 (ENSPLOG00000021347) #11	PJVK (ENSPLOG00000021374) #12	PRKRA (ENSPLOG00000021458) #13	OSBPL6 (ENSPLOG00000021601) #14	RBM45 (ENSPLOG00000021986) #15	PDE11A (ENSPLOG00000022012) #17	ENSPLOG00000022045 #20	ENSPLOG00000022046 #20	AGPS (ENSPLOG00000022055) #21	NFE2L2 (ENSPLOG00000022123) #22	ENSPLOG00000022134 #23	MTX2 (ENSPLOG00000022148) #25	HOXD1 (ENSPLOG00000022171) #27	HOXD3 (ENSPLOG00000022176) #28	HOXD4 (ENSPLOG00000022180) #29	HOXD8 (ENSPLOG00000022192) #30	HOXD9 (ENSPLOG00000022195) #31	HOXD10 (ENSPLOG00000022198) #32	HOXD11 (ENSPLOG00000022202) #33	HOXD12 (ENSPLOG00000022207) #34	HOXD13 (ENSPLOG00000022213) #35	EVX2 (ENSPLOG00000022219) #36	LNPK (ENSPLOG00000022229)	ATP5MC3 (ENSPLOG00000022249)	ATF2 (ENSPLOG00000022276)
leopard	MODERN SPECIES	1	SESTD1 (ENSPPRG00000001855)	CCDC141 (ENSPPRG00000002134)	ENSPPRG00000003860 ##9	TTN (ENSPPRG00000010584) #7	PLEKHA3 (ENSPPRG00000011583) #10	FKBP7 (ENSPPRG00000011718) #11	PJVK (ENSPPRG00000011834) #12	ENSPPRG00000011982 #13	OSBPL6 (ENSPPRG00000015447) #14	RBM45 (ENSPPRG00000017073) #15	ENSPPRG00000017216 #16	PDE11A (ENSPPRG00000019135) #17	ENSPPRG00000021101 #20	ENSPPRG00000021116 #20	AGPS (ENSPPRG00000020328) #21	NFE2L2 (ENSPPRG00000020872) #22	ENSPPRG00000022322 #23	MTX2 (ENSPPRG00000022475) #25	HOXD1 (ENSPPRG00000023009) #27	HOXD3 (ENSPPRG00000022847) #28	HOXD4 (ENSPPRG00000022845) #29	HOXD8 (ENSPPRG00000022672) #30	HOXD9 (ENSPPRG00000000084) #31	HOXD10 (ENSPPRG00000000139) #32	HOXD11 (ENSPPRG00000000168) #33	HOXD12 (ENSPPRG00000000300) #34	HOXD13 (ENSPPRG00000000349) #35	EVX2 (ENSPPRG00000000389) #36	LNPK (ENSPPRG00000000436)	ATP5MC3 (ENSPPRG00000000490)	ATF2 (ENSPPRG00000001271)
Cat	MODERN SPECIES	239	ENSFCAG00000049768 ##9	ENSFCAG00000046893 ##9	ENSFCAG00000050241 ##9	ENSFCAG00000032293 ##9	TTN (ENSFCAG00000046559) #7	PLEKHA3 (ENSFCAG00000025945) #10	FKBP7 (ENSFCAG00000012540) #11	PJVK (ENSFCAG00000018124) #12	PRKRA (ENSFCAG00000031042) #13	OSBPL6 (ENSFCAG00000012535) #14	RBM45 (ENSFCAG00000018793) #15	PDE11A (ENSFCAG00000022207) #17	ENSFCAG00000049217 #20	ENSFCAG00000048732 #20	AGPS (ENSFCAG00000022316) #21	NFE2L2 (ENSFCAG00000012147) #22	HNRNPA3 (ENSFCAG00000012146) #23	MTX2 (ENSFCAG00000030099) #25	HOXD1 (ENSFCAG00000042171) #27	HOXD3 (ENSFCAG00000022371) #28	HOXD4 (ENSFCAG00000045772) #29	HOXD8 (ENSFCAG00000034788) #30	HOXD9 (ENSFCAG00000035038) #31	HOXD10 (ENSFCAG00000006264) #32	HOXD11 (ENSFCAG00000030594) #33	HOXD12 (ENSFCAG00000044671) #34	HOXD13 (ENSFCAG00000030694) #35	EVX2 (ENSFCAG00000023892) #36	LNPK (ENSFCAG00000033171)	ATP5MC3 (ENSFCAG00000012719)	ATF2 (ENSFCAG00000027595)
Caniformia	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Canidae	ANCESTRAL SPECIES	45	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.B ##7	ENSGT01100000263523.L ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.ub #20	ENSGT00390000010116.tb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.i	ENSGT00940000156582
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.L ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.ub #20	ENSGT00390000010116.tb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.i	ENSGT00940000156582
Dingo	MODERN SPECIES	339	ENSCAFG00020007149 #7	ENSCAFG00020007141 ##9	ENSCAFG00020007129 ##9	ENSCAFG00020007118 ##9	ENSCAFG00020007110 ##7	PLEKHA3 (ENSCAFG00020007100) #10	FKBP7 (ENSCAFG00020007095) #11	PJVK (ENSCAFG00020007088) #12	ENSCAFG00020007071 #13	OSBPL6 (ENSCAFG00020007025) #14	RBM45 (ENSCAFG00020007013) #15	PDE11A (ENSCAFG00020006966) #17	ENSCAFG00020006963 #20	ENSCAFG00020006961 #20	AGPS (ENSCAFG00020006351) #21	NFE2L2 (ENSCAFG00020006313) #22	ENSCAFG00020006299 ##23	MTX2 (ENSCAFG00020006273) #25	HOXD1 (ENSCAFG00020006270) #27	HOXD3 (ENSCAFG00020006263) #28	HOXD4 (ENSCAFG00020006256) #29	HOXD8 (ENSCAFG00020006244) #30	HOXD10 (ENSCAFG00020006239) #32	HOXD11 (ENSCAFG00020006229) #33	HOXD9 (ENSCAFG00020006227) #31	HOXD12 (ENSCAFG00020006216) #34	HOXD13 (ENSCAFG00020006212) #35	EVX2 (ENSCAFG00020006206) #36	LNPK (ENSCAFG00020006192)	ENSCAFG00020006176	ENSCAFG00020006151
Dog	MODERN SPECIES	29	CCDC141 (ENSCAFG00845025967)	ENSCAFG00845025823 ##9	ENSCAFG00845025741 ##9	ENSCAFG00845025563 ##9	TTN (ENSCAFG00845023220) #7	PLEKHA3 (ENSCAFG00845022559) #10	FKBP7 (ENSCAFG00845022485) #11	ENSCAFG00845022360 #13	PJVK (ENSCAFG00845022256) #12	OSBPL6 (ENSCAFG00845021295) #14	RBM45 (ENSCAFG00845020808) #15	ENSCAFG00845020768 #16	PDE11A (ENSCAFG00845020545) #17	TTC30A (ENSCAFG00845020493) #20	AGPS (ENSCAFG00845020190) #21	NFE2L2 (ENSCAFG00845020022) #22	HNRNPA3 (ENSCAFG00845019864) #23	MTX2 (ENSCAFG00845019381) #25	HOXD1 (ENSCAFG00845019313) #27	HOXD3 (ENSCAFG00845019275) #28	HOXD4 (ENSCAFG00845019072) #29	HOXD10 (ENSCAFG00845019028) #32	HOXD9 (ENSCAFG00845018856) #31	ENSCAFG00845018802 #33	HOXD12 (ENSCAFG00845018775) #34	HOXD13 (ENSCAFG00845018741) #35	EVX2 (ENSCAFG00845018704) #36	LNPK (ENSCAFG00845018510)	ENSCAFG00845018368	ATP5MC3 (ENSCAFG00845018248)	ATF2 (ENSCAFG00845017708)
Red fox	MODERN SPECIES	15	ENSVVUG00000009921 ##9	ENSVVUG00000009932 ##9	ENSVVUG00000009947 ##9	ENSVVUG00000010016 ##7	PLEKHA3 (ENSVVUG00000010019) #10	FKBP7 (ENSVVUG00000010027) #11	PJVK (ENSVVUG00000010029) #12	PRKRA (ENSVVUG00000010032) #13	OSBPL6 (ENSVVUG00000010039) #14	RBM45 (ENSVVUG00000010078) #15	PDE11A (ENSVVUG00000010094) #17	ENSVVUG00000010109 #20	AGPS (ENSVVUG00000010164) #21	ENSVVUG00000012634 #20	ENSVVUG00000012637	NFE2L2 (ENSVVUG00000012641) #22	ENSVVUG00000012651 ##23	ENSVVUG00000012682 #25	ENSVVUG00000012694	HOXD3 (ENSVVUG00000012700) #28	HOXD8 (ENSVVUG00000012714) #30	ENSVVUG00000012717 #31	HOXD10 (ENSVVUG00000012722) #32	ENSVVUG00000012726 #33	HOXD12 (ENSVVUG00000012731) #34	HOXD13 (ENSVVUG00000012734) #35	EVX2 (ENSVVUG00000012735) #36	LNPK (ENSVVUG00000012737)	ATP5MC3 (ENSVVUG00000012759)	ATF2 (ENSVVUG00000012774)	CHN1 (ENSVVUG00000012819)
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Ursidae	ANCESTRAL SPECIES	7	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00900000143154 #8	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00940000153147.m.a.a.a.b.b ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.m.b
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000005421	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.b ##23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.m.b	ENSGT00940000156582
Polar bear	MODERN SPECIES	142	SESTD1 (ENSUMAG00000016664)	CCDC141 (ENSUMAG00000016645)	ENSUMAG00000016620 #7	ENSUMAG00000016607 ##9	ENSUMAG00000016602 ##9	ENSUMAG00000016583 ##7	PLEKHA3 (ENSUMAG00000016580) #10	FKBP7 (ENSUMAG00000016577) #11	PJVK (ENSUMAG00000016572) #12	PRKRA (ENSUMAG00000016566) #13	OSBPL6 (ENSUMAG00000016519) #14	RBM45 (ENSUMAG00000016503) #15	PDE11A (ENSUMAG00000016414) #17	ENSUMAG00000016390 #20	AGPS (ENSUMAG00000015781) #21	NFE2L2 (ENSUMAG00000015689) #22	ENSUMAG00000015686 ##23	MTX2 (ENSUMAG00000015662) #25	HOXD4 (ENSUMAG00000015658) #29	ENSUMAG00000015653 #30	HOXD10 (ENSUMAG00000015650) #32	ENSUMAG00000015649 #33	LNPK (ENSUMAG00000015613)	ATP5MC3 (ENSUMAG00000015579)	ATF2 (ENSUMAG00000015564)	CHN1 (ENSUMAG00000015511)	CHRNA1 (ENSUMAG00000015480)	ENSUMAG00000015473	ENSUMAG00000015461	GPR155 (ENSUMAG00000015425)	SCRN3 (ENSUMAG00000015422)
American black bear	MODERN SPECIES	390																NFE2L2 (ENSUAMG00000007100) #22
Giant Panda	MODERN SPECIES	11	ENSAMEG00000029059 ##9	ENSAMEG00000029868 ##9	ENSAMEG00000028448 ##9	ENSAMEG00000026332 ##9	ENSAMEG00000029399 #8	ENSAMEG00000030666 #9	PLEKHA3 (ENSAMEG00000000774) #10	FKBP7 (ENSAMEG00000027885) #11	PJVK (ENSAMEG00000000801) #12	PRKRA (ENSAMEG00000000803) #13	OSBPL6 (ENSAMEG00000000825) #14	RBM45 (ENSAMEG00000000896) #15	ENSAMEG00000023664	PDE11A (ENSAMEG00000000902) #17	AGPS (ENSAMEG00000011950) #21	NFE2L2 (ENSAMEG00000011937) #22	HNRNPA3 (ENSAMEG00000011920) #23	ENSAMEG00000019906	MTX2 (ENSAMEG00000001799) #25	HOXD1 (ENSAMEG00000028345) #27	HOXD3 (ENSAMEG00000026957) #28	HOXD4 (ENSAMEG00000025663) #29	HOXD8 (ENSAMEG00000023565) #30	HOXD9 (ENSAMEG00000029987) #31	HOXD10 (ENSAMEG00000001849) #32	ENSAMEG00000025193 #33	HOXD12 (ENSAMEG00000023609) #34	HOXD13 (ENSAMEG00000001865) #35	EVX2 (ENSAMEG00000001868) #36	LNPK (ENSAMEG00000001869)	ATP5MC3 (ENSAMEG00000012367)
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00940000153458.B	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
American mink	MODERN SPECIES	222	ENSNVIG00000006216 ##9	ENSNVIG00000006230 ##9	ENSNVIG00000006244 ##9	ENSNVIG00000006252 #8	ENSNVIG00000006264 #7	PLEKHA3 (ENSNVIG00000006265) #10	FKBP7 (ENSNVIG00000006271) #11	PJVK (ENSNVIG00000006274) #12	PRKRA (ENSNVIG00000006320) #13	OSBPL6 (ENSNVIG00000006388) #14	RBM45 (ENSNVIG00000006823) #15	ENSNVIG00000006839 #16	PDE11A (ENSNVIG00000006854) #17	ENSNVIG00000006929	AGPS (ENSNVIG00000006950) #21	NFE2L2 (ENSNVIG00000006995) #22	HNRNPA3 (ENSNVIG00000007022) #23	MTX2 (ENSNVIG00000007075) #25	HOXD1 (ENSNVIG00000007113) #27	HOXD3 (ENSNVIG00000007128) #28	HOXD4 (ENSNVIG00000007138) #29	ENSNVIG00000007149 #30	HOXD9 (ENSNVIG00000007158) #31	HOXD10 (ENSNVIG00000007162) #32	ENSNVIG00000007170 #33	HOXD12 (ENSNVIG00000007175) #34	HOXD13 (ENSNVIG00000007186) #35	EVX2 (ENSNVIG00000007198) #36	LNPK (ENSNVIG00000007208)
Ferret	MODERN SPECIES	359														AGPS (ENSMPUG00000014173) #21	ENSMPUG00000014172	ENSMPUG00000014168 #22	ENSMPUG00000014103 ##23	ENSMPUG00000014101	MTX2 (ENSMPUG00000014094) #25	ENSMPUG00000014088	HOXD1 (ENSMPUG00000014084) #27	ENSMPUG00000014080	HOXD3 (ENSMPUG00000014072) #28	HOXD4 (ENSMPUG00000014070) #29	ENSMPUG00000014067	ENSMPUG00000014060 #30	HOXD9 (ENSMPUG00000014053) #31	HOXD10 (ENSMPUG00000014049) #32	HOXD11 (ENSMPUG00000014029) #33	HOXD12 (ENSMPUG00000014025) #34	HOXD13 (ENSMPUG00000014022) #35
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Xenarthra	ANCESTRAL SPECIES	11	ENSGT00390000005421	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Sloth	MODERN SPECIES	1509																NFE2L2 (ENSCHOG00000005792) #22
Armadillo	MODERN SPECIES	3580	ENSDNOG00000019250	SESTD1 (ENSDNOG00000014724)	CCDC141 (ENSDNOG00000031268)	ENSDNOG00000048097 #7	ENSDNOG00000031177 ##9	PLEKHA3 (ENSDNOG00000002717) #10	FKBP7 (ENSDNOG00000035521) #11	PJVK (ENSDNOG00000019700) #12	PRKRA (ENSDNOG00000019701) #13	OSBPL6 (ENSDNOG00000016352) #14	RBM45 (ENSDNOG00000001973) #15	ENSDNOG00000016006	ENSDNOG00000032224 #20	ENSDNOG00000044838 #20	AGPS (ENSDNOG00000032919) #21	NFE2L2 (ENSDNOG00000019020) #22	HNRNPA3 (ENSDNOG00000019022) #23	MTX2 (ENSDNOG00000034659) #25	HOXD1 (ENSDNOG00000019807) #27	HOXD3 (ENSDNOG00000035593) #28	HOXD4 (ENSDNOG00000019805) #29	HOXD8 (ENSDNOG00000036145) #30	HOXD10 (ENSDNOG00000034389) #32	HOXD11 (ENSDNOG00000044260) #33	HOXD12 (ENSDNOG00000047700) #34	HOXD13 (ENSDNOG00000019799) #35	EVX2 (ENSDNOG00000019797) #36	ENSDNOG00000045361	LNPK (ENSDNOG00000039308)	ENSDNOG00000044678	ATF2 (ENSDNOG00000015229)
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.e	ENSGT00940000156582
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.p #20	ENSGT00390000010116.o #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.e	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Elephant	MODERN SPECIES	301	SESTD1 (ENSLAFG00000010863)	ENSLAFG00000016368	ENSLAFG00000030749 #7	ENSLAFG00000016250 ##9	PLEKHA3 (ENSLAFG00000006385) #10	FKBP7 (ENSLAFG00000016244) #11	PJVK (ENSLAFG00000016082) #12	PRKRA (ENSLAFG00000026940) #13	OSBPL6 (ENSLAFG00000011141) #14	RBM45 (ENSLAFG00000007464) #15	ENSLAFG00000027524 #16	PDE11A (ENSLAFG00000005234) #17	ENSLAFG00000005704 #20	ENSLAFG00000014996 #20	AGPS (ENSLAFG00000014990) #21	NFE2L2 (ENSLAFG00000016263) #22	ENSLAFG00000027712	MTX2 (ENSLAFG00000013982) #25	HOXD3 (ENSLAFG00000005477) #28	HOXD4 (ENSLAFG00000005480) #29	HOXD8 (ENSLAFG00000004364) #30	HOXD9 (ENSLAFG00000011494) #31	HOXD10 (ENSLAFG00000013262) #32	HOXD12 (ENSLAFG00000017497) #34	HOXD13 (ENSLAFG00000027629) #35	EVX2 (ENSLAFG00000013264) #36	LNPK (ENSLAFG00000004502)	ENSLAFG00000010768	ATF2 (ENSLAFG00000006463)	CHN1 (ENSLAFG00000011074)	CHRNA1 (ENSLAFG00000011067)
Hyrax	MODERN SPECIES	1360																NFE2L2 (ENSPCAG00000013845) #22
Tenrec	MODERN SPECIES	14990																NFE2L2 (ENSETEG00000001387) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000153458.B.b	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C.k #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00940000173501	ENSGT00390000001859	ENSGT00940000154298.a.a
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000153458.B.b	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C.k #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00940000173501	ENSGT00390000001859	ENSGT00940000154298.a.a
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT01100000263532.A.a.a.b.b.a.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b.a ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.o.a #23	ENSGT00950000182919.C.k #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00940000173501	ENSGT00390000001859	ENSGT00940000154298.a.a
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT01100000263532.A.a.a.a.b.c.b.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b.a ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850.fb #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00390000006051.d.b.a.a	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.o.a #23	ENSGT00950000182919.C.k.a #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00940000173501	ENSGT00390000001859	ENSGT00940000154298.a.a.a
Common wonbat	MODERN SPECIES	1018	ENSVURG00010018699 #7	ENSVURG00010018702 ##9	ENSVURG00010018707 ##9	ENSVURG00010018717 ##9	ENSVURG00010018731 #9	FKBP7 (ENSVURG00010018739) #11	PJVK (ENSVURG00010018750) #12	PRKRA (ENSVURG00010018771) #13	OSBPL6 (ENSVURG00010018808) #14	RBM45 (ENSVURG00010018862) #15	ENSVURG00010018867 #16	PDE11A (ENSVURG00010018883) #17	ENSVURG00010018908 #20	AGPS (ENSVURG00010018947) #21	ENSVURG00010019089	NFE2L2 (ENSVURG00010019096) #22	ENSVURG00010019105 #23	ENSVURG00010019134	ENSVURG00010019141 #25	HOXD1 (ENSVURG00010019147) #27	HOXD3 (ENSVURG00010019148) #28	HOXD4 (ENSVURG00010019150) #29	HOXD8 (ENSVURG00010019156) #30	HOXD9 (ENSVURG00010019159) #31	HOXD10 (ENSVURG00010019165) #32	ENSVURG00010019168 #33	HOXD12 (ENSVURG00010019173) #34	HOXD13 (ENSVURG00010019176) #35	EVX2 (ENSVURG00010019179) #36	LNPK (ENSVURG00010019192)	ENSVURG00010019213
koala	MODERN SPECIES	40	ENSPCIG00000011294 ##9	ENSPCIG00000035928 ##9	ENSPCIG00000011306 ##9	ENSPCIG00000025366 #9	ENSPCIG00000025368 #10	FKBP7 (ENSPCIG00000025369) #11	PJVK (ENSPCIG00000025370) #12	PRKRA (ENSPCIG00000025371) #13	OSBPL6 (ENSPCIG00000025378) #14	ENSPCIG00000025391	RBM45 (ENSPCIG00000025402) #15	PDE11A (ENSPCIG00000025405) #17	ENSPCIG00000025413 #20	AGPS (ENSPCIG00000025418) #21	ENSPCIG00000025432	NFE2L2 (ENSPCIG00000025438) #22	ENSPCIG00000025443 #23	ENSPCIG00000035345	ENSPCIG00000034180	MTX2 (ENSPCIG00000006277) #25	HOXD1 (ENSPCIG00000026501) #27	HOXD4 (ENSPCIG00000026503) #29	HOXD3 (ENSPCIG00000026502) #28	HOXD8 (ENSPCIG00000029145) #30	HOXD9 (ENSPCIG00000033878) #31	HOXD10 (ENSPCIG00000029143) #32	ENSPCIG00000034132 #33	HOXD12 (ENSPCIG00000029141) #34	HOXD13 (ENSPCIG00000029140) #35	EVX2 (ENSPCIG00000029139) #36	ENSPCIG00000034586
Wallaby	MODERN SPECIES	11787																NFE2L2 (ENSMEUG00000009798) #22
Tasmanian devil	MODERN SPECIES	2	CCDC141 (ENSSHAG00000012666)	ENSSHAG00000011991 ##9	ENSSHAG00000023191 ##9	ENSSHAG00000021730 ##9	ENSSHAG00000026623 ##9	PLEKHA3 (ENSSHAG00000010292) #10	FKBP7 (ENSSHAG00000010178) #11	PJVK (ENSSHAG00000010083) #12	PRKRA (ENSSHAG00000028806) #13	OSBPL6 (ENSSHAG00000007874) #14	RBM45 (ENSSHAG00000005667) #15	ENSSHAG00000005285 #16	PDE11A (ENSSHAG00000030320) #17	AGPS (ENSSHAG00000018507) #21	ENSSHAG00000022926 #20	NFE2L2 (ENSSHAG00000018277) #22	HNRNPA3 (ENSSHAG00000022116) #23	MTX2 (ENSSHAG00000016381) #25	HOXD1 (ENSSHAG00000016187) #27	HOXD4 (ENSSHAG00000024760) #29	HOXD3 (ENSSHAG00000024332) #28	HOXD8 (ENSSHAG00000026470) #30	HOXD9 (ENSSHAG00000021426) #31	HOXD10 (ENSSHAG00000016004) #32	HOXD11 (ENSSHAG00000021515) #33	HOXD12 (ENSSHAG00000021387) #34	HOXD13 (ENSSHAG00000015915) #35	EVX2 (ENSSHAG00000015873) #36	LNPK (ENSSHAG00000031133)	ATP5MC3 (ENSSHAG00000028674)	ATF2 (ENSSHAG00000029247)
Opossum	MODERN SPECIES	3	ENSMODG00000042738 ##9	ENSMODG00000047084 ##9	ENSMODG00000039210 #9	PLEKHA3 (ENSMODG00000009871) #10	FKBP7 (ENSMODG00000009862) #11	PJVK (ENSMODG00000009854) #12	PRKRA (ENSMODG00000009823) #13	OSBPL6 (ENSMODG00000009796) #14	RBM45 (ENSMODG00000009742) #15	ENSMODG00000029563 #16	ENSMODG00000037708	PDE11A (ENSMODG00000036430) #17	ENSMODG00000048807 #20	ENSMODG00000048757	AGPS (ENSMODG00000009686) #21	NFE2L2 (ENSMODG00000009624) #22	MTX2 (ENSMODG00000009617) #25	HOXD1 (ENSMODG00000009604) #27	HOXD3 (ENSMODG00000046524) #28	HOXD4 (ENSMODG00000009598) #29	HOXD8 (ENSMODG00000009593) #30	HOXD9 (ENSMODG00000009591) #31	HOXD10 (ENSMODG00000009577) #32	HOXD11 (ENSMODG00000009565) #33	HOXD12 (ENSMODG00000024741) #34	HOXD13 (ENSMODG00000009550) #35	EVX2 (ENSMODG00000009546) #36	ENSMODG00000009536	ENSMODG00000047401	ENSMODG00000009520	ATF2 (ENSMODG00000009514)
Platypus	MODERN SPECIES	20	SESTD1 (ENSOANG00000008646)	CCDC141 (ENSOANG00000008645)	ENSOANG00000045935 #7	ENSOANG00000008636 ##9	ENSOANG00000043772 ##9	ENSOANG00000045923 ##9	ENSOANG00000045033 ##9	PLEKHA3 (ENSOANG00000008635) #10	FKBP7 (ENSOANG00000044696) #11	PJVK (ENSOANG00000008632) #12	PRKRA (ENSOANG00000008630) #13	OSBPL6 (ENSOANG00000008628) #14	PDE11A (ENSOANG00000008626) #17	ENSOANG00000008625 #20	AGPS (ENSOANG00000008624) #21	NFE2L2 (ENSOANG00000039992) #22	HNRNPA3 (ENSOANG00000008622) #23	MTX2 (ENSOANG00000008621) #25	HOXD1 (ENSOANG00000043961) #27	HOXD3 (ENSOANG00000038024) #28	HOXD4 (ENSOANG00000037495) #29	HOXD8 (ENSOANG00000036079) #30	HOXD9 (ENSOANG00000008615) #31	HOXD10 (ENSOANG00000037187) #32	HOXD11 (ENSOANG00000048827) #33	HOXD12 (ENSOANG00000004743) #34	HOXD13 (ENSOANG00000043790) #35	EVX2 (ENSOANG00000042825) #36	LNPK (ENSOANG00000008614)	ATP5MC3 (ENSOANG00000046084)	ATF2 (ENSOANG00000008612)
Sauria	ANCESTRAL SPECIES		ENSGT01100000263523.J ##7	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Archelosauria	ANCESTRAL SPECIES	8	ENSGT01100000263523.H ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.E ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Archosauria	ANCESTRAL SPECIES	6	ENSGT01100000263523.G.a.a ##7	ENSGT01100000263523.H ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.E ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Aves	ANCESTRAL SPECIES	8	ENSGT01100000263523.B ##7	ENSGT01100000263523.G.b ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Neognathae	ANCESTRAL SPECIES	6	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Galloanserae	ANCESTRAL SPECIES	7	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.E.q ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653.c.a #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Anatidae	ANCESTRAL SPECIES	10	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.E.q ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000157270 #29	ENSGT00940000160027 #28	ENSGT00940000161653.c.a #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Pink-footed goose	MODERN SPECIES	20	ENSABRG00000004203	ENSABRG00000004180 ##9	ENSABRG00000004141 ##9	ENSABRG00000004053 ##9	ENSABRG00000003603 ##7	ENSABRG00000003426 ##7	PLEKHA3 (ENSABRG00000003409) #10	FKBP7 (ENSABRG00000003404) #11	PJVK (ENSABRG00000003243) #12	OSBPL6 (ENSABRG00000003210) #14	RBM45 (ENSABRG00000003201) #15	ENSABRG00000003166 #16	PDE11A (ENSABRG00000002784) #17	ENSABRG00000002659 #20	AGPS (ENSABRG00000002617) #21	NFE2L2 (ENSABRG00000002594) #22	HNRNPA3 (ENSABRG00000002552) #23	ENSABRG00000002541	MTX2 (ENSABRG00000002506) #25	HOXD1 (ENSABRG00000002496) #27	HOXD4 (ENSABRG00000002472) #29	HOXD3 (ENSABRG00000002455) #28	HOXD8 (ENSABRG00000002447) #30	HOXD9 (ENSABRG00000002443) #31	HOXD10 (ENSABRG00000002435) #32	HOXD11 (ENSABRG00000002426) #33	HOXD12 (ENSABRG00000002420) #34	HOXD13 (ENSABRG00000002397) #35	EVX2 (ENSABRG00000002357) #36	LNPK (ENSABRG00000002302)	ATP5MC3 (ENSABRG00000002218)
Duck	MODERN SPECIES	25	ENSAPLG00000017682 ##9	ENSAPLG00000022613 #7	ENSAPLG00000026953 ##7	ENSAPLG00000026806 ##7	ENSAPLG00000022307 ##7	ENSAPLG00000021067 ##7	PLEKHA3 (ENSAPLG00000013080) #10	FKBP7 (ENSAPLG00000013044) #11	PJVK (ENSAPLG00000012766) #12	OSBPL6 (ENSAPLG00000011717) #14	RBM45 (ENSAPLG00000011049) #15	ENSAPLG00000010932 #16	ENSAPLG00000010831	ENSAPLG00000002228 #20	AGPS (ENSAPLG00000010251) #21	NFE2L2 (ENSAPLG00000010103) #22	HNRNPA3 (ENSAPLG00000009620) #23	MTX2 (ENSAPLG00000009123) #25	HOXD4 (ENSAPLG00000008983) #29	HOXD3 (ENSAPLG00000025122) #28	HOXD8 (ENSAPLG00000008959) #30	HOXD9 (ENSAPLG00000023656) #31	HOXD10 (ENSAPLG00000008956) #32	HOXD11 (ENSAPLG00000020921) #33	HOXD12 (ENSAPLG00000008820) #34	HOXD13 (ENSAPLG00000008742) #35	ENSAPLG00000021400	LNPK (ENSAPLG00000008383)	ATP5MC3 (ENSAPLG00000025020)	ATF2 (ENSAPLG00000007673)	CHN1 (ENSAPLG00000007680)
Phasianidae	ANCESTRAL SPECIES	8	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.I.a.b ##7	ENSGT01100000263523.H ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.E.q ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653.c.a #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.I.a.b ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.C.a.b ##7	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653.c.a #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Turkey	MODERN SPECIES	27	ENSMGAG00000021022 ##9	ENSMGAG00000022630 ##7	ENSMGAG00000020675 ##7	ENSMGAG00000021039 ##7	ENSMGAG00000021104 ##7	ENSMGAG00000018810 #7	PLEKHA3 (ENSMGAG00000009483) #10	FKBP7 (ENSMGAG00000018583) #11	PJVK (ENSMGAG00000009475) #12	OSBPL6 (ENSMGAG00000009454) #14	RBM45 (ENSMGAG00000009496) #15	ENSMGAG00000009612 #17	ENSMGAG00000009509 #20	ENSMGAG00000021341	AGPS (ENSMGAG00000009510) #21	NFE2L2 (ENSMGAG00000009534) #22	HNRNPA3 (ENSMGAG00000009565) #23	MTX2 (ENSMGAG00000009647) #25	ENSMGAG00000016851	ENSMGAG00000018655 #32	HOXD4 (ENSMGAG00000015896) #29	ENSMGAG00000018628	ENSMGAG00000017873	ENSMGAG00000018245	ENSMGAG00000011730	ENSMGAG00000011716	ENSMGAG00000011706	ENSMGAG00000011696	ENSMGAG00000011685	ENSMGAG00000011667	ENSMGAG00000011684
Chicken	MODERN SPECIES	36	UBE2E3 (ENSGALG00010026078)	CWC22 (ENSGALG00010026114)	ZNF385B (ENSGALG00010026154)	SESTD1 (ENSGALG00010026183)	CCDC141 (ENSGALG00010026242)	TTN (ENSGALG00010022969) #7	PLEKHA3 (ENSGALG00010023496) #10	FKBP7 (ENSGALG00010023533) #11	PJVK (ENSGALG00010023559) #12	OSBPL6 (ENSGALG00010023623) #14	RBM45 (ENSGALG00010023793) #15	ENSGALG00010023848 #16	ENSGALG00010023920	TTC30B (ENSGALG00010026261) #20	AGPS (ENSGALG00010024011) #21	NFE2L2 (ENSGALG00010024107) #22	HNRNPA3 (ENSGALG00010024144) #23	MTX2 (ENSGALG00010024183) #25	HOXD3 (ENSGALG00010024724) #28	HOXD4 (ENSGALG00010024746) #29	HOXD8 (ENSGALG00010024753) #30	HOXD9 (ENSGALG00010024763) #31	HOXD10 (ENSGALG00010026746) #32	HOXD11 (ENSGALG00010024780) #33	HOXD12 (ENSGALG00010024782) #34	HOXD13 (ENSGALG00010024790) #35	EVX2 (ENSGALG00010025816) #36	LNPK (ENSGALG00010022433)	ATP5G3 (ENSGALG00010022456)	ATF2 (ENSGALG00010022485)	CHN1 (ENSGALG00010026697)
Japanese quail	MODERN SPECIES	25	ENSCJPG00005017339 ##7	ENSCJPG00005017340 ##7	ENSCJPG00005017341 ##7	ENSCJPG00005017342 ##7	ENSCJPG00005017343 ##7	PLEKHA3 (ENSCJPG00005017344) #10	ENSCJPG00005017345 #11	ENSCJPG00005017346 #11	PJVK (ENSCJPG00005017347) #12	OSBPL6 (ENSCJPG00005017349) #14	RBM45 (ENSCJPG00005017714) #15	ENSCJPG00005017715 #16	PDE11A (ENSCJPG00005017716) #17	ENSCJPG00005017717 #20	AGPS (ENSCJPG00005017718) #21	NFE2L2 (ENSCJPG00005017719) #22	HNRNPA3 (ENSCJPG00005017720) #23	MTX2 (ENSCJPG00005017723) #25	HOXD1 (ENSCJPG00005017724) #27	HOXD3 (ENSCJPG00005017726) #28	HOXD4 (ENSCJPG00005017727) #29	HOXD8 (ENSCJPG00005017729) #30	HOXD9 (ENSCJPG00005017730) #31	HOXD10 (ENSCJPG00005017731) #32	HOXD11 (ENSCJPG00005017732) #33	HOXD12 (ENSCJPG00005017733) #34	HOXD13 (ENSCJPG00005017734) #35	EVX2 (ENSCJPG00005017735) #36	LNPK (ENSCJPG00005017736)	ATP5MC3 (ENSCJPG00005017742)	ATF2 (ENSCJPG00005017743)
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Passeriformes	ANCESTRAL SPECIES	6	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Great tit	MODERN SPECIES	27	ENSPMJG00000018390 ##9	ENSPMJG00000018396 ##7	ENSPMJG00000018397 ##7	ENSPMJG00000018398 ##7	ENSPMJG00000018399 #9	PLEKHA3 (ENSPMJG00000018400) #10	FKBP7 (ENSPMJG00000018401) #11	PJVK (ENSPMJG00000018402) #12	OSBPL6 (ENSPMJG00000018403) #14	RBM45 (ENSPMJG00000018404) #15	ENSPMJG00000018405	ENSPMJG00000018406	ENSPMJG00000018407 #17	ENSPMJG00000018408 #20	AGPS (ENSPMJG00000018409) #21	NFE2L2 (ENSPMJG00000018516) #22	HNRNPA3 (ENSPMJG00000018517) #23	MTX2 (ENSPMJG00000018521) #25	HOXD3 (ENSPMJG00000018522) #28	HOXD4 (ENSPMJG00000018523) #29	HOXD8 (ENSPMJG00000018525) #30	HOXD9 (ENSPMJG00000018527) #31	HOXD10 (ENSPMJG00000018528) #32	HOXD11 (ENSPMJG00000018529) #33	HOXD12 (ENSPMJG00000018530) #34	HOXD13 (ENSPMJG00000018531) #35	EVX2 (ENSPMJG00000018532) #36	LNPK (ENSPMJG00000018533)	ATP5MC3 (ENSPMJG00000018536)	ATF2 (ENSPMJG00000018537)	CHN1 (ENSPMJG00000018538)
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Flycatcher	MODERN SPECIES	26	ENSFALG00000023965 ##9	ENSFALG00000028245 ##7	ENSFALG00000026318 ##7	ENSFALG00000026058 ##7	ENSFALG00000025310 ##7	ENSFALG00000028946 #7	ENSFALG00000023020 #9	PLEKHA3 (ENSFALG00000027197) #10	FKBP7 (ENSFALG00000003417) #11	PJVK (ENSFALG00000003412) #12	OSBPL6 (ENSFALG00000003369) #14	RBM45 (ENSFALG00000003330) #15	PDE11A (ENSFALG00000003284) #17	ENSFALG00000015252 #20	AGPS (ENSFALG00000003257) #21	NFE2L2 (ENSFALG00000003227) #22	HNRNPA3 (ENSFALG00000003215) #23	MTX2 (ENSFALG00000003201) #25	HOXD3 (ENSFALG00000003190) #28	HOXD4 (ENSFALG00000026047) #29	HOXD8 (ENSFALG00000027818) #30	HOXD9 (ENSFALG00000025965) #31	HOXD10 (ENSFALG00000003142) #32	HOXD11 (ENSFALG00000014318) #33	HOXD12 (ENSFALG00000003122) #34	HOXD13 (ENSFALG00000003118) #35	EVX2 (ENSFALG00000003109) #36	LNPK (ENSFALG00000003104)	ATP5MC3 (ENSFALG00000003095)	ATF2 (ENSFALG00000003087)	CHN1 (ENSFALG00000003058)
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Passeroidea	ANCESTRAL SPECIES	8	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263523.E ##7	ENSGT01100000263523.B ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Common canary	MODERN SPECIES	8	ENSSCAG00000000211 ##7	ENSSCAG00000000177 ##7	ENSSCAG00000000135 ##7	ENSSCAG00000000118 ##7	ENSSCAG00000016286 ##7	PLEKHA3 (ENSSCAG00000016282) #10	ENSSCAG00000016281 #11	ENSSCAG00000016278 #11	PJVK (ENSSCAG00000016277) #12	OSBPL6 (ENSSCAG00000016275) #14	ENSSCAG00000016274	RBM45 (ENSSCAG00000016272) #15	ENSSCAG00000016248	ENSSCAG00000016236 #20	AGPS (ENSSCAG00000016170) #21	NFE2L2 (ENSSCAG00000016126) #22	HNRNPA3 (ENSSCAG00000016118) #23	MTX2 (ENSSCAG00000016113) #25	HOXD3 (ENSSCAG00000016112) #28	HOXD4 (ENSSCAG00000016111) #29	HOXD8 (ENSSCAG00000016107) #30	ENSSCAG00000016106	HOXD10 (ENSSCAG00000016104) #32	HOXD11 (ENSSCAG00000016103) #33	HOXD12 (ENSSCAG00000016102) #34	HOXD13 (ENSSCAG00000016098) #35	LNPK (ENSSCAG00000016094)	ATP5MC3 (ENSSCAG00000016089)	ATF2 (ENSSCAG00000016084)	CHN1 (ENSSCAG00000016062)	CHRNA1 (ENSSCAG00000016051)
Zebra finch	MODERN SPECIES	29	ENSTGUG00000026482 ##9	ENSTGUG00000026972 ##9	ENSTGUG00000022812 ##7	ENSTGUG00000020806 ##7	ENSTGUG00000022753 ##7	ENSTGUG00000026449 ##7	ENSTGUG00000025243 ##7	ENSTGUG00000023205 #9	PLEKHA3 (ENSTGUG00000009194) #10	FKBP7 (ENSTGUG00000009189) #11	PJVK (ENSTGUG00000009184) #12	OSBPL6 (ENSTGUG00000009140) #14	RBM45 (ENSTGUG00000009116) #15	ENSTGUG00000009073	AGPS (ENSTGUG00000009031) #21	NFE2L2 (ENSTGUG00000009026) #22	HNRNPA3 (ENSTGUG00000008996) #23	MTX2 (ENSTGUG00000019630) #25	HOXD3 (ENSTGUG00000025792) #28	HOXD4 (ENSTGUG00000008959) #29	HOXD8 (ENSTGUG00000022095) #30	HOXD9 (ENSTGUG00000008955) #31	HOXD10 (ENSTGUG00000008948) #32	HOXD11 (ENSTGUG00000008941) #33	HOXD12 (ENSTGUG00000008938) #34	HOXD13 (ENSTGUG00000022083) #35	EVX2 (ENSTGUG00000008931) #36	LNPK (ENSTGUG00000021038)	ATP5MC3 (ENSTGUG00000008907)	ATF2 (ENSTGUG00000008880)	CHN1 (ENSTGUG00000008848)
Medium ground finch	MODERN SPECIES	1	ENSGFOG00000002584 ##7	ENSGFOG00000007233 ##7	ENSGFOG00000007209 ##7	ENSGFOG00000007202 ##7	ENSGFOG00000007184 ##7	ENSGFOG00000007175 #9	PLEKHA3 (ENSGFOG00000007165) #10	FKBP7 (ENSGFOG00000007132) #11	PJVK (ENSGFOG00000007120) #12	OSBPL6 (ENSGFOG00000007096) #14	RBM45 (ENSGFOG00000007073) #15	ENSGFOG00000007056	ENSGFOG00000007051 #17	ENSGFOG00000007048 #20	AGPS (ENSGFOG00000006623) #21	NFE2L2 (ENSGFOG00000006575) #22	HNRNPA3 (ENSGFOG00000006562) #23	MTX2 (ENSGFOG00000006557) #25	ENSGFOG00000006552 #28	HOXD4 (ENSGFOG00000006548) #29	HOXD8 (ENSGFOG00000006540) #30	ENSGFOG00000006539 #31	ENSGFOG00000006537	HOXD10 (ENSGFOG00000006531) #32	HOXD11 (ENSGFOG00000006526) #33	HOXD12 (ENSGFOG00000006522) #34	HOXD13 (ENSGFOG00000006517) #35	LNPK (ENSGFOG00000006507)	ATP5MC3 (ENSGFOG00000006500)	ATF2 (ENSGFOG00000006478)	ENSGFOG00000006464
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT01100000263532.A.a.a.a.b.c.a ##9	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.I.a.b ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.E ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a
Kakapo	MODERN SPECIES	22	ENSSHBG00005009083 ##9	ENSSHBG00005000726 ##9	ENSSHBG00005000750 #9	ENSSHBG00005000771 ##7	ENSSHBG00005000787 ##7	ENSSHBG00005000796 ##7	PLEKHA3 (ENSSHBG00005000809) #10	FKBP7 (ENSSHBG00005001990) #11	PJVK (ENSSHBG00005002010) #12	OSBPL6 (ENSSHBG00005002344) #14	RBM45 (ENSSHBG00005003026) #15	ENSSHBG00005003038 #16	ENSSHBG00005003059	ENSSHBG00005003095 #20	AGPS (ENSSHBG00005003110) #21	NFE2L2 (ENSSHBG00005003133) #22	HNRNPA3 (ENSSHBG00005003156) #23	MTX2 (ENSSHBG00005003180) #25	HOXD3 (ENSSHBG00005003209) #28	HOXD4 (ENSSHBG00005003224) #29	HOXD8 (ENSSHBG00005003238) #30	HOXD9 (ENSSHBG00005003249) #31	HOXD10 (ENSSHBG00005003256) #32	HOXD11 (ENSSHBG00005003263) #33	HOXD12 (ENSSHBG00005003274) #34	HOXD13 (ENSSHBG00005003286) #35	EVX2 (ENSSHBG00005003303) #36	LNPK (ENSSHBG00005003318)	ATP5MC3 (ENSSHBG00005003340)	ATF2 (ENSSHBG00005003358)	CHN1 (ENSSHBG00005003384)
Golden eagle	MODERN SPECIES	22	ENSACCG00020003250 ##9	ENSACCG00020003292 ##7	ENSACCG00020003357 ##7	ENSACCG00020003401 ##7	ENSACCG00020003422 ##7	ENSACCG00020003442 #9	PLEKHA3 (ENSACCG00020003458) #10	FKBP7 (ENSACCG00020003479) #11	PJVK (ENSACCG00020003494) #12	OSBPL6 (ENSACCG00020003534) #14	RBM45 (ENSACCG00020003596) #15	ENSACCG00020003614 #16	ENSACCG00020003639	ENSACCG00020003656 #20	AGPS (ENSACCG00020003672) #21	NFE2L2 (ENSACCG00020003695) #22	HNRNPA3 (ENSACCG00020003720) #23	MTX2 (ENSACCG00020003762) #25	HOXD3 (ENSACCG00020003777) #28	HOXD4 (ENSACCG00020003785) #29	HOXD8 (ENSACCG00020003802) #30	HOXD9 (ENSACCG00020003811) #31	HOXD10 (ENSACCG00020003829) #32	HOXD11 (ENSACCG00020003844) #33	HOXD12 (ENSACCG00020003850) #34	HOXD13 (ENSACCG00020003861) #35	EVX2 (ENSACCG00020003885) #36	LNPK (ENSACCG00020003901)	ATP5MC3 (ENSACCG00020003917)	ATF2 (ENSACCG00020003942)	CHN1 (ENSACCG00020003968)
African ostrich	MODERN SPECIES	152											RBM45 (ENSSCUG00000003150) #15	ENSSCUG00000003143 #16	PDE11A (ENSSCUG00000003133) #17	ENSSCUG00000003126 #20	AGPS (ENSSCUG00000003124) #21	NFE2L2 (ENSSCUG00000003120) #22	HNRNPA3 (ENSSCUG00000003116) #23
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005013581	ENSCPRG00005013585 #9	ENSCPRG00005013594 ##7	ENSCPRG00005013604 ##7	ENSCPRG00005013628 ##7	PLEKHA3 (ENSCPRG00005013653) #10	ENSCPRG00005013671 ##7	ENSCPRG00005013675 #9	FKBP7 (ENSCPRG00005013688) #11	OSBPL6 (ENSCPRG00005013696) #14	RBM45 (ENSCPRG00005013721) #15	ENSCPRG00005013733 #16	ENSCPRG00005013750	ENSCPRG00005013775 #20	AGPS (ENSCPRG00005013779) #21	NFE2L2 (ENSCPRG00005013780) #22	HNRNPA3 (ENSCPRG00005013786) #23	ENSCPRG00005013800	MTX2 (ENSCPRG00005013807) #25	HOXD1 (ENSCPRG00005013818) #27	HOXD3 (ENSCPRG00005013823) #28	HOXD4 (ENSCPRG00005013826) #29	HOXD8 (ENSCPRG00005013830) #30	HOXD9 (ENSCPRG00005013832) #31	HOXD10 (ENSCPRG00005013834) #32	HOXD11 (ENSCPRG00005013836) #33	HOXD12 (ENSCPRG00005013839) #34	HOXD13 (ENSCPRG00005013840) #35	EVX2 (ENSCPRG00005013841) #36	LNPK (ENSCPRG00005013854)	ATP5MC3 (ENSCPRG00005013858)
Cryptodira	ANCESTRAL SPECIES	5	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.E ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.E ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964.c #11	ENSGT00940000159964.d #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Emydidae	ANCESTRAL SPECIES	4	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.E ##7	ENSGT00940000155850 #10	ENSGT00940000159964.c #11	ENSGT00940000159964.d #11	ENSGT00950000183140.a.b.c #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
painted turtle	MODERN SPECIES	2363	ENSCPBG00000002467 #9	ENSCPBG00000002548 ##7	ENSCPBG00000002601 ##7	ENSCPBG00000002702 ##7	ENSCPBG00000002842 ##7	PLEKHA3 (ENSCPBG00000003014) #10	ENSCPBG00000003031 #11	ENSCPBG00000003042 #11	ENSCPBG00000003060 #12	OSBPL6 (ENSCPBG00000003121) #14	RBM45 (ENSCPBG00000003246) #15	ENSCPBG00000003254 #16	ENSCPBG00000003283	ENSCPBG00000003305 #20	AGPS (ENSCPBG00000003348) #21	NFE2L2 (ENSCPBG00000003397) #22	HNRNPA3 (ENSCPBG00000003430) #23	MTX2 (ENSCPBG00000003480) #25	HOXD1 (ENSCPBG00000003489) #27	HOXD3 (ENSCPBG00000003500) #28	HOXD4 (ENSCPBG00000003507) #29	HOXD8 (ENSCPBG00000003524) #30	ENSCPBG00000003539	HOXD10 (ENSCPBG00000003567) #32	HOXD11 (ENSCPBG00000003578) #33	HOXD12 (ENSCPBG00000003590) #34	HOXD13 (ENSCPBG00000003603) #35	EVX2 (ENSCPBG00000003612) #36	LNPK (ENSCPBG00000003649)	ENSCPBG00000003699	ATP5MC3 (ENSCPBG00000003721)
Three-toed box turtle	MODERN SPECIES	25	ENSTMTG00000017734 ##7	ENSTMTG00000017718 ##7	ENSTMTG00000017593 ##7	ENSTMTG00000017496 ##9	ENSTMTG00000017378 ##7	PLEKHA3 (ENSTMTG00000017351) #10	FKBP7 (ENSTMTG00000017327) #11	PJVK (ENSTMTG00000017294) #12	PRKRA (ENSTMTG00000017277) #13	OSBPL6 (ENSTMTG00000016769) #14	RBM45 (ENSTMTG00000016722) #15	ENSTMTG00000016712 #16	ENSTMTG00000016667	ENSTMTG00000016654 #20	AGPS (ENSTMTG00000016599) #21	NFE2L2 (ENSTMTG00000016586) #22	HNRNPA3 (ENSTMTG00000016553) #23	MTX2 (ENSTMTG00000016539) #25	HOXD1 (ENSTMTG00000016527) #27	HOXD3 (ENSTMTG00000016516) #28	HOXD4 (ENSTMTG00000016507) #29	HOXD8 (ENSTMTG00000016482) #30	HOXD9 (ENSTMTG00000016450) #31	HOXD10 (ENSTMTG00000016440) #32	HOXD11 (ENSTMTG00000016420) #33	HOXD12 (ENSTMTG00000016406) #34	HOXD13 (ENSTMTG00000016398) #35	EVX2 (ENSTMTG00000016382) #36	LNPK (ENSTMTG00000016336)	ATP5MC3 (ENSTMTG00000016312)	ATF2 (ENSTMTG00000016268)
Testudinidae	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.a.a ##9	ENSGT01100000263532.A.a.a.a.b.c.b.c.a ##9	ENSGT01100000263523.G.a.a ##7	ENSGT01100000263523.E ##7	ENSGT00940000155850 #10	ENSGT00940000159964.c #11	ENSGT00940000159964.d #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a.a
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005018884 ##7	ENSGEVG00005018991 ##7	ENSGEVG00005019129 ##7	ENSGEVG00005019169 ##7	PLEKHA3 (ENSGEVG00005019213) #10	ENSGEVG00005019223 #11	ENSGEVG00005019232 #11	PJVK (ENSGEVG00005019241) #12	PRKRA (ENSGEVG00005019255) #13	OSBPL6 (ENSGEVG00005019328) #14	RBM45 (ENSGEVG00005019483) #15	ENSGEVG00005019493 #16	ENSGEVG00005019504	ENSGEVG00005019518 #20	AGPS (ENSGEVG00005019755) #21	NFE2L2 (ENSGEVG00005020090) #22	HNRNPA3 (ENSGEVG00005020097) #23	MTX2 (ENSGEVG00005020106) #25	HOXD1 (ENSGEVG00005009340) #27	HOXD3 (ENSGEVG00005009410) #28	HOXD4 (ENSGEVG00005009454) #29	HOXD8 (ENSGEVG00005009500) #30	ENSGEVG00005009551	HOXD10 (ENSGEVG00005009665) #32	HOXD11 (ENSGEVG00005009700) #33	HOXD12 (ENSGEVG00005009748) #34	HOXD13 (ENSGEVG00005009780) #35	EVX2 (ENSGEVG00005009804) #36	LNPK (ENSGEVG00005009864)	ENSGEVG00005009994	ATF2 (ENSGEVG00005010051)
Abingdon island giant tortoise	MODERN SPECIES	2642	ENSCABG00000018554 ##7	ENSCABG00000018552 ##7	ENSCABG00000018551 ##7	ENSCABG00000018550 ##7	ENSCABG00000018549 #9	PLEKHA3 (ENSCABG00000018548) #10	FKBP7 (ENSCABG00000018543) #11	PJVK (ENSCABG00000018540) #12	PRKRA (ENSCABG00000018538) #13	OSBPL6 (ENSCABG00000018068) #14	RBM45 (ENSCABG00000018047) #15	ENSCABG00000018044 #16	ENSCABG00000018026	ENSCABG00000018022 #20	AGPS (ENSCABG00000018012) #21	NFE2L2 (ENSCABG00000018010) #22	HNRNPA3 (ENSCABG00000018007) #23	ENSCABG00000018005	RPRM (ENSCABG00000018004)
Chinese turtle	MODERN SPECIES	780	TTN (ENSPSIG00000011160) #7	ENSPSIG00000002792 #10	FKBP7 (ENSPSIG00000002815) #11	ENSPSIG00000001476 #12	ENSPSIG00000002819 #12	PRKRA (ENSPSIG00000002848) #13	ENSPSIG00000002859 #14	ENSPSIG00000002862 #14	ENSPSIG00000002871 #14	RBM45 (ENSPSIG00000002884) #15	ENSPSIG00000002892 #16	ENSPSIG00000002895	ENSPSIG00000002897 #17	ENSPSIG00000001485 #20	AGPS (ENSPSIG00000002901) #21	NFE2L2 (ENSPSIG00000003007) #22	ENSPSIG00000001493	HNRNPA3 (ENSPSIG00000003011) #23	ENSPSIG00000001503	MTX2 (ENSPSIG00000003052) #25	HOXD1 (ENSPSIG00000003058) #27	HOXD3 (ENSPSIG00000003067) #28	HOXD4 (ENSPSIG00000003079) #29	HOXD10 (ENSPSIG00000003088) #32	HOXD11 (ENSPSIG00000003098) #33	HOXD12 (ENSPSIG00000003112) #34	HOXD13 (ENSPSIG00000003141) #35	EVX2 (ENSPSIG00000003143) #36	LNPK (ENSPSIG00000003146)	ATP5MC3 (ENSPSIG00000003200)	ATF2 (ENSPSIG00000003225)
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT01100000263523.C.a.b ##7	ENSGT01100000263523.E ##7	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Episquamata	ANCESTRAL SPECIES		ENSGT01100000263532.A.a.a.b.b.a.a ##9	ENSGT01100000263532.A.a.a.b.b.a.b.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a
Toxicofera	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.b ##9	ENSGT01100000263532.A.a.b ##9	ENSGT01100000263532.A.a.a.b.b.a.b.b ##9	ENSGT01100000263532.A.a.a.a.b.c.b ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Elapidae	ANCESTRAL SPECIES		ENSGT00440000038972	ENSGT01100000263523.A #7	ENSGT01100000263532.A.a.a.a.b.d ##9	ENSGT01100000263532.B ##9	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00940000157883.a.b.e.a.d #16	ENSGT00940000162151 #17	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a.c
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.a.b.d ##9	ENSGT01100000263532.B ##9	ENSGT01100000263523.I.a.b.a ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00940000157883.a.b.e.a.d #16	ENSGT00940000162151 #17	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.lc	ENSGT00940000156582	ENSGT01000000218334
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT01100000263532.B ##9	ENSGT01100000263532.A.a.a.a.b.d ##9	ENSGT01100000263523.I.a.b.a ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00940000157883.a.b.e.a.d #16	ENSGT00940000162151 #17	ENSGT00390000010116.i #20	ENSGT00390000010116.j #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a.lc	ENSGT00940000156582	ENSGT01030000234635.a.b.a.b.b.a.a.c
Eastern brown snake	MODERN SPECIES	7	ENSPTXG00000003569 ##9	ENSPTXG00000003571 ##7	ENSPTXG00000003573 ##7	ENSPTXG00000003574 #9	ENSPTXG00000003575 ##7	ENSPTXG00000003576 #10	FKBP7 (ENSPTXG00000003577) #11	PJVK (ENSPTXG00000003578) #12	PRKRA (ENSPTXG00000003579) #13	OSBPL6 (ENSPTXG00000003580) #14	ENSPTXG00000003584 #16	PDE11A (ENSPTXG00000003586) #17	ENSPTXG00000003587 #20	ENSPTXG00000003590 #20	AGPS (ENSPTXG00000003592) #21	NFE2L2 (ENSPTXG00000003594) #22	ENSPTXG00000003601	MTX2 (ENSPTXG00000003605) #25	HOXD1 (ENSPTXG00000003611) #27	HOXD3 (ENSPTXG00000003613) #28	HOXD4 (ENSPTXG00000003615) #29	HOXD8 (ENSPTXG00000003619) #30	HOXD9 (ENSPTXG00000003620) #31	HOXD10 (ENSPTXG00000003623) #32	HOXD13 (ENSPTXG00000000024) #35	EVX2 (ENSPTXG00000000029) #36	LNPK (ENSPTXG00000000058)	ENSPTXG00000000082	ATF2 (ENSPTXG00000000105)	CHN1 (ENSPTXG00000000161)	CHRNA1 (ENSPTXG00000000220)
Mainland tiger snake	MODERN SPECIES	21	ENSNSUG00000015622 ##7	ENSNSUG00000015623 ##9	ENSNSUG00000015624 #9	ENSNSUG00000015625 #7	PLEKHA3 (ENSNSUG00000015626) #10	FKBP7 (ENSNSUG00000015627) #11	PJVK (ENSNSUG00000015628) #12	ENSNSUG00000015629 #13	ENSNSUG00000015630 #13	OSBPL6 (ENSNSUG00000015631) #14	ENSNSUG00000015966 #16	PDE11A (ENSNSUG00000015967) #17	ENSNSUG00000015968 #20	ENSNSUG00000015969 #20	AGPS (ENSNSUG00000015970) #21	NFE2L2 (ENSNSUG00000016001) #22	ENSNSUG00000016003
Blue-lipped sea krait	MODERN SPECIES	1351																NFE2L2 (ENSLLTG00000004478) #22	ENSLLTG00000004463
Indian cobra	MODERN SPECIES		ENSNNAG00000000007 #9	ENSNNAG00000000016 ##7	ENSNNAG00000000027 ##7	ENSNNAG00000000030 ##7	ENSNNAG00000000032 ##7	ENSNNAG00000000033 #9	PLEKHA3 (ENSNNAG00000000036) #10	FKBP7 (ENSNNAG00000000038) #11	PJVK (ENSNNAG00000000041) #12	OSBPL6 (ENSNNAG00000000050) #14	PRKRA (ENSNNAG00000000071) #13	ENSNNAG00000000074 #16	PDE11A (ENSNNAG00000000076) #17	ENSNNAG00000000080 #20	AGPS (ENSNNAG00000000082) #21	NFE2L2 (ENSNNAG00000000084) #22	ENSNNAG00000000087	MTX2 (ENSNNAG00000000088) #25	ENSNNAG00000000090	HOXD1 (ENSNNAG00000000092) #27	HOXD3 (ENSNNAG00000000093) #28	HOXD4 (ENSNNAG00000000094) #29	HOXD8 (ENSNNAG00000000096) #30	HOXD9 (ENSNNAG00000000098) #31	HOXD10 (ENSNNAG00000000100) #32	HOXD11 (ENSNNAG00000000101) #33	HOXD13 (ENSNNAG00000000102) #35	EVX2 (ENSNNAG00000000104) #36	LNPK (ENSNNAG00000000108)	ATP5MC3 (ENSNNAG00000000110)	ATF2 (ENSNNAG00000000112)
Lizard	MODERN SPECIES	1024												ENSACAG00000029156 #16	PDE11A (ENSACAG00000012077) #17	ENSACAG00000012154 #20	AGPS (ENSACAG00000012169) #21	NFE2L2 (ENSACAG00000012216) #22	ENSACAG00000012234	ENSACAG00000042605
Laterata	ANCESTRAL SPECIES	30	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.b ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147 #23	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000159938 #34	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582
Common wall lizard	MODERN SPECIES		ENSPMRG00000003284 ##7	ENSPMRG00000003298 ##7	ENSPMRG00000003318 ##7	ENSPMRG00000003366 ##7	ENSPMRG00000003374 ##7	ENSPMRG00000003385 #9	PLEKHA3 (ENSPMRG00000003392) #10	FKBP7 (ENSPMRG00000003396) #11	PJVK (ENSPMRG00000003405) #12	ENSPMRG00000003417 #13	OSBPL6 (ENSPMRG00000003515) #14	ENSPMRG00000004105 #16	PDE11A (ENSPMRG00000004113) #17	ENSPMRG00000004125 #20	AGPS (ENSPMRG00000004129) #21	NFE2L2 (ENSPMRG00000004147) #22	HNRNPA3 (ENSPMRG00000004153) #23	MTX2 (ENSPMRG00000004174) #25	HOXD1 (ENSPMRG00000004218) #27	HOXD3 (ENSPMRG00000004224) #28	HOXD4 (ENSPMRG00000004227) #29	HOXD8 (ENSPMRG00000004233) #30	HOXD10 (ENSPMRG00000004241) #32	HOXD11 (ENSPMRG00000004246) #33	HOXD12 (ENSPMRG00000004249) #34	HOXD13 (ENSPMRG00000004253) #35	EVX2 (ENSPMRG00000004255) #36	LNPK (ENSPMRG00000004264)	ENSPMRG00000004309	ENSPMRG00000004311	ATF2 (ENSPMRG00000004321)
Argentine black and white tegu	MODERN SPECIES	18	ENSSMRG00000018242 ##7	ENSSMRG00000018241 ##7	ENSSMRG00000018240 ##7	ENSSMRG00000018239 #9	PLEKHA3 (ENSSMRG00000018238) #10	FKBP7 (ENSSMRG00000018237) #11	ENSSMRG00000018236	PJVK (ENSSMRG00000018235) #12	PRKRA (ENSSMRG00000018234) #13	OSBPL6 (ENSSMRG00000018233) #14	ENSSMRG00000018232 #15	ENSSMRG00000018231 #15	ENSSMRG00000018230 #16	ENSSMRG00000018228	AGPS (ENSSMRG00000018227) #21	NFE2L2 (ENSSMRG00000018226) #22	ENSSMRG00000018224	MTX2 (ENSSMRG00000018218) #25	HOXD1 (ENSSMRG00000018217) #27	HOXD4 (ENSSMRG00000018216) #29	HOXD3 (ENSSMRG00000018215) #28	HOXD8 (ENSSMRG00000018213) #30	HOXD9 (ENSSMRG00000018212) #31	HOXD10 (ENSSMRG00000018211) #32	HOXD11 (ENSSMRG00000018210) #33	HOXD12 (ENSSMRG00000018209) #34	HOXD13 (ENSSMRG00000018208) #35	EVX2 (ENSSMRG00000018207) #36	LNPK (ENSSMRG00000018206)	ENSSMRG00000018204	ATF2 (ENSSMRG00000018203)
tuatara	MODERN SPECIES	1466	ENSSPUG00000006310	ENSSPUG00000006275 #7	ENSSPUG00000006245 ##9	ENSSPUG00000006235 ##7	ENSSPUG00000006213 #9	PLEKHA3 (ENSSPUG00000006195) #10	ENSSPUG00000006183 #11	ENSSPUG00000006173 #11	PJVK (ENSSPUG00000006152) #12	PRKRA (ENSSPUG00000006140) #13	OSBPL6 (ENSSPUG00000005829) #14	RBM45 (ENSSPUG00000005740) #15	ENSSPUG00000005695 #16	ENSSPUG00000005529	AGPS (ENSSPUG00000005469) #21	NFE2L2 (ENSSPUG00000005456) #22	HNRNPA3 (ENSSPUG00000005423) #23	MTX2 (ENSSPUG00000005399) #25	ENSSPUG00000005391	HOXD4 (ENSSPUG00000005347) #29	HOXD10 (ENSSPUG00000005271) #32	HOXD11 (ENSSPUG00000005263) #33	HOXD12 (ENSSPUG00000005253) #34	HOXD13 (ENSSPUG00000005247) #35	ENSSPUG00000005190	LNPK (ENSSPUG00000005091)
Anura	ANCESTRAL SPECIES	7	ENSGT01100000263523.G.a.b.b ##7	ENSGT01100000263523.G.a.a ##7	ENSGT01100000263523.J ##7	ENSGT01100000263523.I.a.a.b ##7	ENSGT01100000263523.F ##7	ENSGT01100000263532.C.c.b #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #13	ENSGT00940000156791 #14	ENSGT00680000100059 #15	ENSGT00940000157883.a.b.e.a #16	ENSGT00940000164264	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #25	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #33	ENSGT00940000161457 #35	ENSGT00940000161025 #36	ENSGT00390000001859	ENSGT00940000154298.a.a	ENSGT00940000156582	ENSGT00940000156851
Frog	MODERN SPECIES	9	sp3 (ENSXETG00000008503)	ola1 (ENSXETG00000008500)	ENSXETG00000046285	sp9 (ENSXETG00000030987)	cir1 (ENSXETG00000036152)	scrn3 (ENSXETG00000008487)	gpr155 (ENSXETG00000008486)	ENSXETG00000046227	wipf1 (ENSXETG00000008476)	chrna1.2 (ENSXETG00000044131)	cyct (ENSXETG00000008472) #16	ENSXETG00000008473	pde11a (ENSXETG00000008465)	agps (ENSXETG00000008462) #21	ENSXETG00000045596	nfe2l2 (ENSXETG00000001808) #22	hnrnpa3 (ENSXETG00000001806)	ENSXETG00000047117	mtx2 (ENSXETG00000001802) #25	hoxd1 (ENSXETG00000001801) #27	hoxd3 (ENSXETG00000037804) #28	HOXD4 (ENSXETG00000001799) #29	hoxd8 (ENSXETG00000040128) #30	ENSXETG00000043675	ENSXETG00000027973	hoxd10 (ENSXETG00000032416) #33	hoxd9 (ENSXETG00000045288) #31	hoxd13 (ENSXETG00000007575) #35	evx2 (ENSXETG00000040812) #36	lnpk (ENSXETG00000007570)	chn1 (ENSXETG00000015003)
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000029796 ##9	ENSLLEG00000029681 ##7	ENSLLEG00000029480 ##7	ENSLLEG00000029336 #9	PLEKHA3 (ENSLLEG00000029298) #10	FKBP7 (ENSLLEG00000029265) #11	PJVK (ENSLLEG00000029208) #12	PRKRA (ENSLLEG00000029174) #13	OSBPL6 (ENSLLEG00000029061) #14	RBM45 (ENSLLEG00000029039) #15	ENSLLEG00000029028	ENSLLEG00000029018 #16	ENSLLEG00000028901	AGPS (ENSLLEG00000028535) #21	ENSLLEG00000028487	NFE2L2 (ENSLLEG00000028454) #22	ENSLLEG00000028371	ENSLLEG00000028342	ENSLLEG00000028331	ENSLLEG00000028320	ENSLLEG00000028308	ENSLLEG00000028297	MTX2 (ENSLLEG00000028232) #25	HOXD1 (ENSLLEG00000028203) #27	HOXD3 (ENSLLEG00000028179) #28	HOXD4 (ENSLLEG00000028161) #29	ENSLLEG00000028121	HOXD9 (ENSLLEG00000028108) #31	HOXD10 (ENSLLEG00000028079) #32	HOXD11 (ENSLLEG00000028065) #33	HOXD13 (ENSLLEG00000028045) #35