Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##8	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Primates	ANCESTRAL SPECIES	13	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.b ##8	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263523.F ##9	ENSGT01100000263523.L ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Catarrhini	ANCESTRAL SPECIES	16	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263523.F ##9	ENSGT01100000263523.L ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025
Rhinopithecus	ANCESTRAL SPECIES	148	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000168702 #18	ENSGT00910000148248 #19	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00960000186717.a #25	ENSGT00940000154301.`b.a #26	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025
Black snub-nosed monkey	MODERN SPECIES	241	ENSRBIG00000043799 #7	ENSRBIG00000037878 #8	ENSRBIG00000029254 #9	PLEKHA3 (ENSRBIG00000003168) #10	FKBP7 (ENSRBIG00000040596) #11	PJVK (ENSRBIG00000034251) #12	ENSRBIG00000014635 #13	PRKRA (ENSRBIG00000035301) #14	OSBPL6 (ENSRBIG00000040280) #15	RBM45 (ENSRBIG00000033680) #16	PDE11A (ENSRBIG00000043623) #17	ENSRBIG00000035583 #18	ENSRBIG00000030274 #19	TTC30A (ENSRBIG00000041155) #20	AGPS (ENSRBIG00000039582) #21	NFE2L2 (ENSRBIG00000042825) #22	ENSRBIG00000012615 #23	MTX2 (ENSRBIG00000043097) #24	ENSRBIG00000042767 #25	ENSRBIG00000032024 #26	HOXD1 (ENSRBIG00000031297) #27	HOXD3 (ENSRBIG00000044829) #28	HOXD4 (ENSRBIG00000027637) #29	HOXD8 (ENSRBIG00000036417) #30	HOXD9 (ENSRBIG00000035340) #31	HOXD10 (ENSRBIG00000030470) #32	HOXD12 (ENSRBIG00000040792) #33	ENSRBIG00000035253 #34	HOXD13 (ENSRBIG00000033719) #35	LNPK (ENSRBIG00000038235) #36	ENSRBIG00000038159 #37
Golden snub-nosed monkey	MODERN SPECIES	722	CWC22 (ENSRROG00000037520)	ZNF385B (ENSRROG00000003706)	SESTD1 (ENSRROG00000029348)	CCDC141 (ENSRROG00000037411)	TTN (ENSRROG00000045525) #9	PLEKHA3 (ENSRROG00000041107) #10	FKBP7 (ENSRROG00000020947) #11	PJVK (ENSRROG00000007464) #12	PRKRA (ENSRROG00000035389) #14	OSBPL6 (ENSRROG00000036096) #15	RBM45 (ENSRROG00000031398) #16	ENSRROG00000041594	PDE11A (ENSRROG00000028809) #17	TTC30A (ENSRROG00000023478) #20	AGPS (ENSRROG00000035068) #21	NFE2L2 (ENSRROG00000045317) #22	ENSRROG00000028794 ##23	MTX2 (ENSRROG00000030249) #24	ENSRROG00000020854	ENSRROG00000042876 #25	ENSRROG00000038369 #26	HOXD1 (ENSRROG00000035364) #27	HOXD3 (ENSRROG00000044509) #28	HOXD4 (ENSRROG00000026646) #29	ENSRROG00000024611 #30	HOXD10 (ENSRROG00000036162) #32	HOXD9 (ENSRROG00000032216) #31	ENSRROG00000043226 #34	HOXD12 (ENSRROG00000043268) #33	HOXD13 (ENSRROG00000040419) #35	EVX2 (ENSRROG00000044705)
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00950000182922.a.a.a.b.a.a.b.b
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000168702 #18	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36
Pig-tailed macaque	MODERN SPECIES	585												PDE11A (ENSMNEG00000037080) #17	TTC30A (ENSMNEG00000000192) #20	TTC30B (ENSMNEG00000011632) ##20	AGPS (ENSMNEG00000043672) #21	NFE2L2 (ENSMNEG00000028208) #22	ENSMNEG00000034936 ##23	ENSMNEG00000026533	MTX2 (ENSMNEG00000032881) #24	HOXD1 (ENSMNEG00000010514) #27	ENSMNEG00000018849	HOXD3 (ENSMNEG00000040202) #28	HOXD4 (ENSMNEG00000030845) #29	HOXD8 (ENSMNEG00000028133) #30	HOXD9 (ENSMNEG00000044938) #31	HOXD10 (ENSMNEG00000033923) #32	HOXD11 (ENSMNEG00000029127) #34	HOXD12 (ENSMNEG00000002891) #33	HOXD13 (ENSMNEG00000027142) #35	EVX2 (ENSMNEG00000028323)	ENSMNEG00000024050
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000168702 #18	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00940000170471.B.a.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025
Crab-eating macaque	MODERN SPECIES	3	SESTD1 (ENSMFAG00000013388)	CCDC141 (ENSMFAG00000000963)	ENSMFAG00000063214 #9	PLEKHA3 (ENSMFAG00000031192) #10	FKBP7 (ENSMFAG00000034329) #11	PJVK (ENSMFAG00000001249) #12	PRKRA (ENSMFAG00000040213) #14	OSBPL6 (ENSMFAG00000003510) #15	ENSMFAG00000060300	RBM45 (ENSMFAG00000042524) #16	ENSMFAG00000034055 #18	PDE11A (ENSMFAG00000042268) #17	TTC30A (ENSMFAG00000053112) #20	TTC30B (ENSMFAG00000057741) ##20	AGPS (ENSMFAG00000038904) #21	NFE2L2 (ENSMFAG00000041108) #22	HNRNPA3 (ENSMFAG00000000823) ##23	ENSMFAG00000058081	ENSMFAG00000065500	MTX2 (ENSMFAG00000026822) #24	HOXD1 (ENSMFAG00000046035) #27	ENSMFAG00000047422	HOXD3 (ENSMFAG00000034065) #28	HOXD4 (ENSMFAG00000052240) #29	HOXD8 (ENSMFAG00000065214) #30	HOXD9 (ENSMFAG00000000099) #31	HOXD10 (ENSMFAG00000031117) #32	ENSMFAG00000043724 #34	HOXD12 (ENSMFAG00000051547) #33	HOXD13 (ENSMFAG00000033237) #35	ENSMFAG00000053875
Rhesus	MODERN SPECIES	3	ZNF385B (ENSMMUG00000003855)	SESTD1 (ENSMMUG00000019690)	ENSMMUG00000019689	TTN (ENSMMUG00000009038) #9	PLEKHA3 (ENSMMUG00000002189) #10	FKBP7 (ENSMMUG00000002187) #11	PJVK (ENSMMUG00000054264) #12	PRKRA (ENSMMUG00000002185) ##14	OSBPL6 (ENSMMUG00000002183) #15	RBM45 (ENSMMUG00000002013) #16	PDE11A (ENSMMUG00000002011) #17	TTC30A (ENSMMUG00000041827) #20	TTC30B (ENSMMUG00000043597) ##20	AGPS (ENSMMUG00000008502) #21	ENSMMUG00000065205	NFE2L2 (ENSMMUG00000001861) #22	HNRNPA3 (ENSMMUG00000001858) ##23	ENSMMUG00000062299	ENSMMUG00000054983	ENSMMUG00000031367	MTX2 (ENSMMUG00000010185) #24	HOXD1 (ENSMMUG00000065344) #27	ENSMMUG00000052177	HOXD3 (ENSMMUG00000051761) #28	HOXD4 (ENSMMUG00000060947) #29	HOXD8 (ENSMMUG00000023504) #30	HOXD9 (ENSMMUG00000032599) #31	HOXD10 (ENSMMUG00000046368) #32	HOXD11 (ENSMMUG00000047915) #34	HOXD12 (ENSMMUG00000023501) #33	HOXD13 (ENSMMUG00000055831) #35
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00950000182922.a.a.a.b.a.a.b.b
Olive baboon	MODERN SPECIES	1	SESTD1 (ENSPANG00000020529)	CCDC141 (ENSPANG00000006772)	TTN (ENSPANG00000022292) #9	PLEKHA3 (ENSPANG00000013332) #10	FKBP7 (ENSPANG00000019540) #11	PJVK (ENSPANG00000014211) #12	PRKRA (ENSPANG00000001046) #14	OSBPL6 (ENSPANG00000016378) #15	ENSPANG00000046096	RBM45 (ENSPANG00000016088) #16	ENSPANG00000029672 #18	PDE11A (ENSPANG00000025222) #17	TTC30A (ENSPANG00000041839) #20	TTC30B (ENSPANG00000046724) ##20	AGPS (ENSPANG00000004764) #21	NFE2L2 (ENSPANG00000039361) #22	ENSPANG00000018337 ##23	ENSPANG00000045287	MTX2 (ENSPANG00000013333) #24	HOXD1 (ENSPANG00000009593) #27	HOXD3 (ENSPANG00000000543) #28	HOXD4 (ENSPANG00000000542) #29	HOXD8 (ENSPANG00000049199) #30	HOXD9 (ENSPANG00000001061) #31	HOXD10 (ENSPANG00000050198) #32	HOXD11 (ENSPANG00000049530) #34	ENSPANG00000044332 #33	ENSPANG00000044695 #35	ENSPANG00000039545	LNPK (ENSPANG00000011787) #36	ATP5MC3 (ENSPANG00000031591)
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00950000182922.a.a.a.b.a.a.b.b
Sooty mangabey	MODERN SPECIES	570	SESTD1 (ENSCATG00000024404)	CCDC141 (ENSCATG00000030397)	TTN (ENSCATG00000041967) #9	PLEKHA3 (ENSCATG00000038850) #10	FKBP7 (ENSCATG00000037065) #11	PJVK (ENSCATG00000035539) #12	PRKRA (ENSCATG00000032736) #14	OSBPL6 (ENSCATG00000040355) #15	RBM45 (ENSCATG00000041082) #16	ENSCATG00000039319	ENSCATG00000008317	PDE11A (ENSCATG00000042325) #17	TTC30A (ENSCATG00000000123) #20	TTC30B (ENSCATG00000004635) ##20	AGPS (ENSCATG00000038387) #21	NFE2L2 (ENSCATG00000036834) #22	ENSCATG00000001855	HNRNPA3 (ENSCATG00000032162) ##23	ENSCATG00000022731	MTX2 (ENSCATG00000039959) #24	HOXD1 (ENSCATG00000032397) #27	ENSCATG00000032250	HOXD3 (ENSCATG00000029355) #28	HOXD4 (ENSCATG00000041719) #29	HOXD8 (ENSCATG00000032148) #30	HOXD9 (ENSCATG00000037190) #31	HOXD11 (ENSCATG00000031157) #34	HOXD10 (ENSCATG00000032256) #32	HOXD12 (ENSCATG00000032043) #33	HOXD13 (ENSCATG00000031889) #35	EVX2 (ENSCATG00000038250)
Drill	MODERN SPECIES	1072			ENSMLEG00000034299 ##9	PLEKHA3 (ENSMLEG00000030446) #10	FKBP7 (ENSMLEG00000015651) #11	PJVK (ENSMLEG00000027972) #12	PRKRA (ENSMLEG00000019578) #14	OSBPL6 (ENSMLEG00000021439) #15	RBM45 (ENSMLEG00000042404) #16	PDE11A (ENSMLEG00000044286) #17	ENSMLEG00000035955 #18	ENSMLEG00000039892 #19	TTC30A (ENSMLEG00000027775) #20	TTC30B (ENSMLEG00000027894) ##20	AGPS (ENSMLEG00000033858) #21	NFE2L2 (ENSMLEG00000042705) #22	MTX2 (ENSMLEG00000002029) #24	HOXD1 (ENSMLEG00000035890) #27	HOXD3 (ENSMLEG00000037278) #28	HOXD4 (ENSMLEG00000024188) #29	ENSMLEG00000042507 #30	HOXD9 (ENSMLEG00000025695) #31	HOXD10 (ENSMLEG00000044067) #32	ENSMLEG00000030792 #34	HOXD12 (ENSMLEG00000032533) #33	HOXD13 (ENSMLEG00000031532) #35	EVX2 (ENSMLEG00000035528)	LNPK (ENSMLEG00000033659) #36	ENSMLEG00000001270 ##37	ATP5MC3 (ENSMLEG00000043816)	ATF2 (ENSMLEG00000035167)
Vervet Monkey	MODERN SPECIES	1	UBE2E3 (ENSCSAG00000012910)	CWC22 (ENSCSAG00000012925)	ZNF385B (ENSCSAG00000012932)	SESTD1 (ENSCSAG00000012944)	CCDC141 (ENSCSAG00000012957)	TTN (ENSCSAG00000013817) #9	PLEKHA3 (ENSCSAG00000014182) #10	FKBP7 (ENSCSAG00000014194) #11	PJVK (ENSCSAG00000014212) #12	OSBPL6 (ENSCSAG00000014221) #15	RBM45 (ENSCSAG00000014231) #16	ENSCSAG00000014240	PDE11A (ENSCSAG00000014313) #17	TTC30A (ENSCSAG00000018651) #20	AGPS (ENSCSAG00000014345) #21	NFE2L2 (ENSCSAG00000014353) #22	ENSCSAG00000014399 ##23	MTX2 (ENSCSAG00000014412) #24	HOXD1 (ENSCSAG00000014419) #27	HOXD3 (ENSCSAG00000014422) #28	HOXD4 (ENSCSAG00000014429) #29	HOXD8 (ENSCSAG00000014437) #30	HOXD9 (ENSCSAG00000014441) #31	HOXD10 (ENSCSAG00000014448) #32	HOXD11 (ENSCSAG00000014457) #34	HOXD12 (ENSCSAG00000014464) #33	HOXD13 (ENSCSAG00000014475) #35	EVX2 (ENSCSAG00000014486)	LNPK (ENSCSAG00000014506) #36	ATF2 (ENSCSAG00000014523)	CHN1 (ENSCSAG00000014539)
Hominoidea	ANCESTRAL SPECIES	15	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263523.F ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025
Hominidae	ANCESTRAL SPECIES	17	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36
Pan	ANCESTRAL SPECIES	12	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618.o.b #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00390000010991.f.b	ENSGT00940000162151 #17	ENSGT00390000010116.kb #20	ENSGT00390000010116.jb ##20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00910000147200	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00910000147400	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36
Bonobo	MODERN SPECIES	15	ENSPPAG00000026551	ENSPPAG00000037260 #8	ENSPPAG00000034897 #9	PLEKHA3 (ENSPPAG00000036608) #10	FKBP7 (ENSPPAG00000043985) #11	PJVK (ENSPPAG00000037654) #12	PRKRA (ENSPPAG00000043306) ##14	OSBPL6 (ENSPPAG00000025663) #15	RBM45 (ENSPPAG00000026278) #16	ENSPPAG00000035494	ENSPPAG00000029280	PDE11A (ENSPPAG00000036387) #17	TTC30A (ENSPPAG00000023829) #20	TTC30B (ENSPPAG00000019313) ##20	AGPS (ENSPPAG00000036868) #21	NFE2L2 (ENSPPAG00000037501) #22	HNRNPA3 (ENSPPAG00000023768) ##23	ENSPPAG00000012679	MTX2 (ENSPPAG00000043265) #24	ENSPPAG00000025118	ENSPPAG00000031665 #27	ENSPPAG00000013988	HOXD3 (ENSPPAG00000031713) #28	HOXD4 (ENSPPAG00000034992) #29	ENSPPAG00000034189 #30	HOXD9 (ENSPPAG00000039242) #31	HOXD10 (ENSPPAG00000036046) #32	ENSPPAG00000028125 #34	HOXD12 (ENSPPAG00000017089) #33	ENSPPAG00000010483 #35	ENSPPAG00000039855
Chimpanzee	MODERN SPECIES	15	SESTD1 (ENSPTRG00000012695)	CCDC141 (ENSPTRG00000012693)	TTN (ENSPTRG00000012691) #9	PLEKHA3 (ENSPTRG00000012690) #10	FKBP7 (ENSPTRG00000012689) #11	PJVK (ENSPTRG00000029126) #12	PRKRA (ENSPTRG00000012688) #14	OSBPL6 (ENSPTRG00000012687) #15	RBM45 (ENSPTRG00000012686) #16	ENSPTRG00000051577	ENSPTRG00000046153	PDE11A (ENSPTRG00000012684) #17	TTC30A (ENSPTRG00000044238) #20	TTC30B (ENSPTRG00000048299) ##20	AGPS (ENSPTRG00000012680) #21	NFE2L2 (ENSPTRG00000012677) #22	HNRNPA3 (ENSPTRG00000012676) ##23	ENSPTRG00000042815	MTX2 (ENSPTRG00000012674) #24	ENSPTRG00000023851	HOXD1 (ENSPTRG00000052716) #27	ENSPTRG00000051348	HOXD3 (ENSPTRG00000012672) #28	HOXD4 (ENSPTRG00000051862) #29	HOXD8 (ENSPTRG00000012669) #30	HOXD9 (ENSPTRG00000043464) #31	HOXD10 (ENSPTRG00000012667) #32	HOXD11 (ENSPTRG00000012666) #34	HOXD12 (ENSPTRG00000012665) #33	HOXD13 (ENSPTRG00000012664) #35	EVX2 (ENSPTRG00000012663)
Human	MODERN SPECIES	11	CWC22 (ENSG00000163510)	ZNF385B (ENSG00000144331)	SESTD1 (ENSG00000187231)	CCDC141 (ENSG00000163492)	TTN (ENSG00000155657) #9	PLEKHA3 (ENSG00000116095) #10	FKBP7 (ENSG00000079150) #11	PJVK (ENSG00000204311) #12	PRKRA (ENSG00000180228) #14	OSBPL6 (ENSG00000079156) #15	RBM45 (ENSG00000155636) #16	PDE11A (ENSG00000128655) #17	TTC30A (ENSG00000197557) #20	TTC30B (ENSG00000196659) ##20	AGPS (ENSG00000018510) #21	NFE2L2 (ENSG00000116044) #22	HNRNPA3 (ENSG00000170144) ##23	MTX2 (ENSG00000128654) #24	HOXD1 (ENSG00000128645) #27	HOXD4 (ENSG00000170166) #29	HOXD3 (ENSG00000128652) #28	HOXD8 (ENSG00000175879) #30	HOXD9 (ENSG00000128709) #31	HOXD10 (ENSG00000128710) #32	HOXD11 (ENSG00000128713) #34	HOXD12 (ENSG00000170178) #33	HOXD13 (ENSG00000128714) #35	EVX2 (ENSG00000174279)	LNPK (ENSG00000144320) #36	ATP5MC3 (ENSG00000154518)	ATF2 (ENSG00000115966)
Gorilla	MODERN SPECIES	15	SESTD1 (ENSGGOG00000000846)	ENSGGOG00000014468	TTN (ENSGGOG00000007919) #9	PLEKHA3 (ENSGGOG00000012980) #10	FKBP7 (ENSGGOG00000034906) #11	PJVK (ENSGGOG00000011071) #12	PRKRA (ENSGGOG00000005754) #14	OSBPL6 (ENSGGOG00000008266) #15	RBM45 (ENSGGOG00000013981) #16	ENSGGOG00000040977	ENSGGOG00000040822	PDE11A (ENSGGOG00000034968) #17	TTC30A (ENSGGOG00000009811) #20	AGPS (ENSGGOG00000012114) #21	ENSGGOG00000037000	NFE2L2 (ENSGGOG00000001231) #22	HNRNPA3 (ENSGGOG00000006130) ##23	ENSGGOG00000043877	ENSGGOG00000037084	MTX2 (ENSGGOG00000044125) #24	ENSGGOG00000040237 #35	ENSGGOG00000040635 #33	ENSGGOG00000041480	HOXD1 (ENSGGOG00000001348) #27	ENSGGOG00000037792	HOXD3 (ENSGGOG00000037089) #28	HOXD4 (ENSGGOG00000042533) #29	ENSGGOG00000009898 #30	HOXD9 (ENSGGOG00000001343) #31	HOXD10 (ENSGGOG00000001341) #32	ENSGGOG00000044084
Orangutan	MODERN SPECIES	15	CWC22 (ENSPPYG00000012986)	ZNF385B (ENSPPYG00000012984)	SESTD1 (ENSPPYG00000012982)	CCDC141 (ENSPPYG00000012981)	TTN (ENSPPYG00000012980) #9	PLEKHA3 (ENSPPYG00000012979) #10	FKBP7 (ENSPPYG00000012978) #11	PJVK (ENSPPYG00000012977) #12	ENSPPYG00000012976 ##14	OSBPL6 (ENSPPYG00000012975) #15	RBM45 (ENSPPYG00000012974) #16	PDE11A (ENSPPYG00000012972) #17	TTC30A (ENSPPYG00000038583) #20	TTC30B (ENSPPYG00000034101) ##20	AGPS (ENSPPYG00000012969) #21	NFE2L2 (ENSPPYG00000012968) #22	HNRNPA3 (ENSPPYG00000012967) #23	MTX2 (ENSPPYG00000012966) #24	ENSPPYG00000037565	HOXD1 (ENSPPYG00000012964) #27	HOXD3 (ENSPPYG00000012963) #28	HOXD4 (ENSPPYG00000034536) #29	HOXD8 (ENSPPYG00000037201) #30	HOXD9 (ENSPPYG00000012959) #31	HOXD10 (ENSPPYG00000012958) #32	HOXD11 (ENSPPYG00000031598) #34	HOXD12 (ENSPPYG00000012957) #33	HOXD13 (ENSPPYG00000012956) #35	EVX2 (ENSPPYG00000012955)	LNPK (ENSPPYG00000032630) #36	ATP5MC3 (ENSPPYG00000037033)
Gibbon	MODERN SPECIES	14	ENSNLEG00000006205	ENSNLEG00000006175 #9	ENSNLEG00000032978 #8	ENSNLEG00000034742 ##9	PLEKHA3 (ENSNLEG00000006150) #10	FKBP7 (ENSNLEG00000006149) #11	PJVK (ENSNLEG00000006144) #12	ENSNLEG00000006120 ##14	OSBPL6 (ENSNLEG00000006086) #15	RBM45 (ENSNLEG00000006080) #16	ENSNLEG00000030325	PDE11A (ENSNLEG00000006056) #17	TTC30A (ENSNLEG00000030979) #20	TTC30B (ENSNLEG00000033307) ##20	AGPS (ENSNLEG00000006030) #21	NFE2L2 (ENSNLEG00000006029) #22	HNRNPA3 (ENSNLEG00000028401) ##23	ENSNLEG00000029348	ENSNLEG00000035565	MTX2 (ENSNLEG00000006020) #24	HOXD1 (ENSNLEG00000006019) #27	ENSNLEG00000027160	HOXD3 (ENSNLEG00000006018) #28	HOXD4 (ENSNLEG00000006014) #29	ENSNLEG00000006003 #30	HOXD9 (ENSNLEG00000006011) #31	HOXD10 (ENSNLEG00000006010) #32	HOXD12 (ENSNLEG00000006006) #33	HOXD13 (ENSNLEG00000029303) #35	EVX2 (ENSNLEG00000005999)	LNPK (ENSNLEG00000005977) #36
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000162151 #17	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000155611.s	ENSGT00730000111148.s	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000162151 #17	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00940000155611.s	ENSGT00730000111148.s	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000162151 #17	ENSGT00390000010116.mb #20	ENSGT00390000010116.lb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Capuchin	MODERN SPECIES	78	ZNF385B (ENSCCAG00000036046)	SESTD1 (ENSCCAG00000035636)	CCDC141 (ENSCCAG00000022986)	ENSCCAG00000031194 #8	TTN (ENSCCAG00000034292) #9	PLEKHA3 (ENSCCAG00000021212) #10	FKBP7 (ENSCCAG00000023204) #11	PJVK (ENSCCAG00000036547) #12	PRKRA (ENSCCAG00000024400) #14	OSBPL6 (ENSCCAG00000034516) #15	RBM45 (ENSCCAG00000022783) #16	PDE11A (ENSCCAG00000023473) #17	ENSCCAG00000011267 #20	ENSCCAG00000002151 #20	AGPS (ENSCCAG00000012654) #21	NFE2L2 (ENSCCAG00000033992) #22	ENSCCAG00000032029	ENSCCAG00000020064
Bolivian squirrel monkey	MODERN SPECIES	46	SESTD1 (ENSSBOG00000028940)	CCDC141 (ENSSBOG00000020873)	TTN (ENSSBOG00000021641) #9	ENSSBOG00000032089 #8	PLEKHA3 (ENSSBOG00000030061) #10	FKBP7 (ENSSBOG00000029794) #11	PJVK (ENSSBOG00000022982) #12	PRKRA (ENSSBOG00000012105) #14	ENSSBOG00000035006	OSBPL6 (ENSSBOG00000020436) #15	RBM45 (ENSSBOG00000005469) #16	PDE11A (ENSSBOG00000026746) #17	ENSSBOG00000018055 #20	ENSSBOG00000019156 #20	AGPS (ENSSBOG00000026720) #21	NFE2L2 (ENSSBOG00000022740) #22	HNRNPA3 (ENSSBOG00000034307) ##23	MTX2 (ENSSBOG00000025795) #24	HOXD1 (ENSSBOG00000030906) #27	HOXD3 (ENSSBOG00000031894) #28	HOXD4 (ENSSBOG00000031535) #29	ENSSBOG00000029405 #30	HOXD9 (ENSSBOG00000031095) #31	HOXD10 (ENSSBOG00000020553) #32	HOXD12 (ENSSBOG00000025723) #33	HOXD13 (ENSSBOG00000032579) #35	EVX2 (ENSSBOG00000034364)	LNPK (ENSSBOG00000023054) #36	ATP5MC3 (ENSSBOG00000022688)	ATF2 (ENSSBOG00000025461)	CHN1 (ENSSBOG00000016307)
Marmoset	MODERN SPECIES	18	PLEKHA3 (ENSCJAG00000045213) #10	ENSCJAG00000021525 #8	CCDC141 (ENSCJAG00000032110)	SESTD1 (ENSCJAG00000021532)	ZNF385B (ENSCJAG00000021534)	ENSCJAG00000084427	ENSCJAG00000047313	ENSCJAG00000072241	ENSCJAG00000021516 #16	PDE11A (ENSCJAG00000014554) #17	ENSCJAG00000081742	ENSCJAG00000081808	AGPS (ENSCJAG00000021508) #21	ENSCJAG00000021732 #20	ENSCJAG00000059559	NFE2L2 (ENSCJAG00000008340) #22	ENSCJAG00000006928 ##23	ENSCJAG00000072603	MTX2 (ENSCJAG00000039174) #24	HOXD1 (ENSCJAG00000008290) #27	HOXD3 (ENSCJAG00000063715) #28	HOXD4 (ENSCJAG00000008286) #29	HOXD8 (ENSCJAG00000008284) #30	HOXD9 (ENSCJAG00000046789) #31	HOXD10 (ENSCJAG00000008269) #32	HOXD11 (ENSCJAG00000048503) #34	HOXD12 (ENSCJAG00000079626) #33	HOXD13 (ENSCJAG00000040882) #35	EVX2 (ENSCJAG00000077487)	LNPK (ENSCJAG00000008226) #36	ENSCJAG00000022954
Mas night monkey	MODERN SPECIES	1333													ENSANAG00000025414 #17	ENSANAG00000003240 #20	AGPS (ENSANAG00000019626) #21	NFE2L2 (ENSANAG00000023669) #22	HNRNPA3 (ENSANAG00000002931) ##23	MTX2 (ENSANAG00000022501) #24	ENSANAG00000031061	HOXD1 (ENSANAG00000019775) #27	HOXD3 (ENSANAG00000026428) #28	HOXD4 (ENSANAG00000028028) #29	HOXD8 (ENSANAG00000026980) #30	HOXD9 (ENSANAG00000024699) #31	HOXD10 (ENSANAG00000025381) #32	HOXD11 (ENSANAG00000029678) #34	HOXD12 (ENSANAG00000008919) #33	HOXD13 (ENSANAG00000029500) #35	EVX2 (ENSANAG00000031929)	LNPK (ENSANAG00000019161) #36	ENSANAG00000021797
Tarsier	MODERN SPECIES	1208																NFE2L2 (ENSTSYG00000000155) #22	HNRNPA3 (ENSTSYG00000026299) ##23
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.b ##8	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263523.B ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000164264	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263523.B ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Mouse lemur	MODERN SPECIES	30	ENSMICG00000030550 #9	ENSMICG00000043822 #8	ENSMICG00000031280 ##9	ENSMICG00000009898 #10	FKBP7 (ENSMICG00000044765) #11	PJVK (ENSMICG00000028765) #12	PRKRA (ENSMICG00000009883) #14	OSBPL6 (ENSMICG00000003793) #15	RBM45 (ENSMICG00000003787) #16	ENSMICG00000047030	PDE11A (ENSMICG00000003770) #17	ENSMICG00000030225	ENSMICG00000046051 #20	ENSMICG00000003768 #20	AGPS (ENSMICG00000003750) #21	NFE2L2 (ENSMICG00000009559) #22	ENSMICG00000027841 #23	MTX2 (ENSMICG00000004295) #24	HOXD1 (ENSMICG00000044650) #27	HOXD3 (ENSMICG00000004286) #28	HOXD4 (ENSMICG00000043209) #29	HOXD8 (ENSMICG00000004277) #30	HOXD9 (ENSMICG00000031229) #31	HOXD10 (ENSMICG00000028373) #32	HOXD11 (ENSMICG00000048033) #34	HOXD12 (ENSMICG00000002172) #33	HOXD13 (ENSMICG00000002170) #35	EVX2 (ENSMICG00000035343)	LNPK (ENSMICG00000027707) #36	ATP5MC3 (ENSMICG00000006421)	ATF2 (ENSMICG00000006417)
Lemuriformes_a	ANCESTRAL SPECIES	69	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.a #23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Greater bamboo lemur	MODERN SPECIES	315	SESTD1 (ENSPSMG00000006407)	CCDC141 (ENSPSMG00000006422)	TTN (ENSPSMG00000006740) #9	ENSPSMG00000006846 ##8	ENSPSMG00000006848 #8	PLEKHA3 (ENSPSMG00000006866) #10	FKBP7 (ENSPSMG00000006879) #11	PJVK (ENSPSMG00000006888) #12	PRKRA (ENSPSMG00000006915) #14	OSBPL6 (ENSPSMG00000007245) #15	RBM45 (ENSPSMG00000007558) #16	ENSPSMG00000007568	PDE11A (ENSPSMG00000007629) #17	ENSPSMG00000007645 #20	AGPS (ENSPSMG00000007683) #21	NFE2L2 (ENSPSMG00000007760) #22	ENSPSMG00000007769 #23	TRIM37 (ENSPSMG00000008046)	ENSPSMG00000008167	ENSPSMG00000008202
Coquerels sifaka	MODERN SPECIES	478	CCDC141 (ENSPCOG00000001783)	ENSPCOG00000025904 #9	ENSPCOG00000024634 #8	ENSPCOG00000021252 #9	PLEKHA3 (ENSPCOG00000020560) #10	FKBP7 (ENSPCOG00000018941) #11	PJVK (ENSPCOG00000022935) #12	PRKRA (ENSPCOG00000018812) #14	OSBPL6 (ENSPCOG00000010731) #15	ENSPCOG00000005659	RBM45 (ENSPCOG00000021526) #16	ENSPCOG00000028806	ENSPCOG00000025842	PDE11A (ENSPCOG00000025830) #17	AGPS (ENSPCOG00000018665) #21	NFE2L2 (ENSPCOG00000007362) #22	MTX2 (ENSPCOG00000025077) #24	HOXD1 (ENSPCOG00000024445) #27	HOXD3 (ENSPCOG00000017195) #28	HOXD4 (ENSPCOG00000018337) #29	HOXD8 (ENSPCOG00000024233) #30	HOXD9 (ENSPCOG00000026809) #31	HOXD10 (ENSPCOG00000023637) #32	HOXD11 (ENSPCOG00000015055) #34	HOXD12 (ENSPCOG00000022036) #33	HOXD13 (ENSPCOG00000018735) #35	EVX2 (ENSPCOG00000022416)	LNPK (ENSPCOG00000026983) #36	ATP5MC3 (ENSPCOG00000016374)	ATF2 (ENSPCOG00000025416)	CHN1 (ENSPCOG00000018830)
Bushbaby	MODERN SPECIES	163	ZNF385B (ENSOGAG00000008520)	SESTD1 (ENSOGAG00000011106)	CCDC141 (ENSOGAG00000003186)	ENSOGAG00000025603 #9	ENSOGAG00000029563 ##8	PLEKHA3 (ENSOGAG00000002724) #10	FKBP7 (ENSOGAG00000002721) #11	PJVK (ENSOGAG00000033780) #12	PRKRA (ENSOGAG00000013971) #14	OSBPL6 (ENSOGAG00000013765) #15	RBM45 (ENSOGAG00000015195) #16	ENSOGAG00000026648	ENSOGAG00000013191	ENSOGAG00000013189 #20	AGPS (ENSOGAG00000013184) #21	NFE2L2 (ENSOGAG00000034393) #22	ENSOGAG00000028132 #23	ENSOGAG00000032690	MTX2 (ENSOGAG00000016422) #24	HOXD1 (ENSOGAG00000015712) #27	HOXD3 (ENSOGAG00000015710) #28	HOXD4 (ENSOGAG00000029168) #29	HOXD8 (ENSOGAG00000015707) #30	HOXD9 (ENSOGAG00000015697) #31	HOXD10 (ENSOGAG00000015694) #32	HOXD11 (ENSOGAG00000029520) #34	HOXD12 (ENSOGAG00000015689) #33	HOXD13 (ENSOGAG00000027055) #35	EVX2 (ENSOGAG00000025378)	LNPK (ENSOGAG00000030372) #36	ENSOGAG00000030354
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a ##8	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Tree shrew	MODERN SPECIES	650																NFE2L2 (ENSTBEG00000001588) #22
Glires	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.b.b.a.a ##8	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.B ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT01100000263523.K ##9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00940000164264	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Rabbit	MODERN SPECIES	18	ENSOCUG00000035152 #8	ENSOCUG00000033996 ##9	ENSOCUG00000016777 ##9	PLEKHA3 (ENSOCUG00000005495) #10	FKBP7 (ENSOCUG00000024679) #11	PJVK (ENSOCUG00000005493) #12	PRKRA (ENSOCUG00000005489) #14	OSBPL6 (ENSOCUG00000004078) #15	RBM45 (ENSOCUG00000001125) #16	ENSOCUG00000025342	ENSOCUG00000039559	ENSOCUG00000008038	ENSOCUG00000039012 #20	ENSOCUG00000029884 #20	AGPS (ENSOCUG00000011521) #21	NFE2L2 (ENSOCUG00000001009) #22	ENSOCUG00000002743 ##23	ENSOCUG00000030456	ENSOCUG00000025666	MTX2 (ENSOCUG00000008760) #24	HOXD1 (ENSOCUG00000015582) #27	HOXD3 (ENSOCUG00000014119) #28	HOXD4 (ENSOCUG00000002413) #29	ENSOCUG00000035940 #30	HOXD9 (ENSOCUG00000023956) #31	HOXD10 (ENSOCUG00000008964) #32	HOXD11 (ENSOCUG00000013942) #34	HOXD12 (ENSOCUG00000002412) #33	HOXD13 (ENSOCUG00000029547) #35	EVX2 (ENSOCUG00000032776)	LNPK (ENSOCUG00000008962) #36
Pika	MODERN SPECIES	6647													GUCA1A (ENSOPRG00000013964)	GUCA1ANB (ENSOPRG00000018852)	TAF8 (ENSOPRG00000013945)	NFE2L2 (ENSOPRG00000013934) #22
Rodentia	ANCESTRAL SPECIES	14	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263523.B ##9	ENSGT01100000263523.A #9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Myomorpha	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT01100000263523.B ##9	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Muroidea	ANCESTRAL SPECIES	34	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT01100000263523.B ##9	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Cricetidae	ANCESTRAL SPECIES	12	ENSGT01100000263532.A.a.a.a.b.c.b ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00900000143159	ENSGT01100000263523.B ##9	ENSGT00900000143154	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001011105 #9	ENSCGRG00001011823	ENSCGRG00001001535 ##8	Plekha3 (ENSCGRG00001002827) #10	Fkbp7 (ENSCGRG00001004871) #11	Pjvk (ENSCGRG00001006219) #12	Prkra (ENSCGRG00001009200) #14	Osbpl6 (ENSCGRG00001002669) #15	Rbm45 (ENSCGRG00001005759) #16	Cyct (ENSCGRG00001008096)	Pde11a (ENSCGRG00001011422) #17	ENSCGRG00001003072	Ttc30a1 (ENSCGRG00001000892) #20	Ttc30b (ENSCGRG00001002157) #20	Agps (ENSCGRG00001003863) #21	Nfe2l2 (ENSCGRG00001005715) #22	ENSCGRG00001008592 ##23	ENSCGRG00001003235	Mtx2 (ENSCGRG00001014247) #24	ENSCGRG00001014512	Hoxd1 (ENSCGRG00001011572) #27	Hoxd3 (ENSCGRG00001011863) #28	Hoxd4 (ENSCGRG00001012360) #29	Hoxd8 (ENSCGRG00001013130) #30	Hoxd9 (ENSCGRG00001005991) #31	Hoxd10 (ENSCGRG00001008302) #32	Hoxd11 (ENSCGRG00001010386) #34	Hoxd12 (ENSCGRG00001000877) #33	Hoxd13 (ENSCGRG00001001661) #35	Evx2 (ENSCGRG00001003649)	ENSCGRG00001006802
Golden Hamster	MODERN SPECIES	618	ENSMAUG00000001413	ENSMAUG00000016510 #9	ENSMAUG00000018214 ##9	ENSMAUG00000018562	ENSMAUG00000019513	ENSMAUG00000018786 ##8	Plekha3 (ENSMAUG00000019341) #10	Fkbp7 (ENSMAUG00000016606) #11	Pjvk (ENSMAUG00000018018) #12	Prkra (ENSMAUG00000019631) #14	Osbpl6 (ENSMAUG00000018609) #15	Rbm45 (ENSMAUG00000016948) #16	Cyct (ENSMAUG00000016722)	Pde11a (ENSMAUG00000021257) #17	Agps (ENSMAUG00000017317) #21	Nfe2l2 (ENSMAUG00000017700) #22	ENSMAUG00000017462	Mtx2 (ENSMAUG00000017870) #24	Hoxd1 (ENSMAUG00000018401) #27	Hoxd3 (ENSMAUG00000018318) #28	Hoxd4 (ENSMAUG00000018545) #29	Hoxd8 (ENSMAUG00000018092) #30	Hoxd9 (ENSMAUG00000018538) #31	Hoxd10 (ENSMAUG00000016731) #32	ENSMAUG00000020249 #34	Hoxd12 (ENSMAUG00000018416) #33	Hoxd13 (ENSMAUG00000017185) #35	Evx2 (ENSMAUG00000020383)	Lnpk (ENSMAUG00000018821) #36	ENSMAUG00000020495	Atp5g3 (ENSMAUG00000017685)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00900000143154	ENSGT01100000263523.A #9	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Prairie vole	MODERN SPECIES	12	ENSMOCG00000017985	ENSMOCG00000017796 ##9	ENSMOCG00000015811 ##8	Plekha3 (ENSMOCG00000004146) #10	Fkbp7 (ENSMOCG00000008125) #11	Pjvk (ENSMOCG00000006830) #12	Prkra (ENSMOCG00000004548) #14	Osbpl6 (ENSMOCG00000017155) #15	Rbm45 (ENSMOCG00000017295) #16	Cyct (ENSMOCG00000021506)	Pde11a (ENSMOCG00000005959) #17	Ttc30a2 (ENSMOCG00000002802) #20	ENSMOCG00000001098	Ttc30b (ENSMOCG00000001580) #20	Agps (ENSMOCG00000017476) #21	Nfe2l2 (ENSMOCG00000020760) #22	ENSMOCG00000019409 ##23	Mtx2 (ENSMOCG00000017110) #24	Hoxd1 (ENSMOCG00000014086) #27	Hoxd4 (ENSMOCG00000013646) #29	Hoxd3 (ENSMOCG00000022552) #28	Hoxd8 (ENSMOCG00000022746) #30	Hoxd9 (ENSMOCG00000005870) #31	Hoxd10 (ENSMOCG00000006052) #32	Hoxd11 (ENSMOCG00000019226) #34	Hoxd12 (ENSMOCG00000018953) #33	Hoxd13 (ENSMOCG00000014618) #35	Evx2 (ENSMOCG00000010466)	Lnpk (ENSMOCG00000022345) #36	ENSMOCG00000012786	Atf2 (ENSMOCG00000015301)
Northern American deer mouse	MODERN SPECIES	17	ENSPEMG00000028754 #8	ENSPEMG00000014359	Ttn (ENSPEMG00000022085) #9	Plekha3 (ENSPEMG00000021541) #10	Fkbp7 (ENSPEMG00000011534) #11	Pjvk (ENSPEMG00000013970) #12	Prkra (ENSPEMG00000011967) #14	Osbpl6 (ENSPEMG00000010580) #15	Rbm45 (ENSPEMG00000002470) #16	Cyct (ENSPEMG00000028091)	Pde11a (ENSPEMG00000021597) #17	Ttc30a1 (ENSPEMG00000025624) #20	Ttc30b (ENSPEMG00000001902) #20	ENSPEMG00000023662	Agps (ENSPEMG00000010561) #21	Nfe2l2 (ENSPEMG00000023181) #22	Hnrnpa3 (ENSPEMG00000021885) ##23	Mtx2 (ENSPEMG00000022093) #24	Hoxd1 (ENSPEMG00000021389) #27	Hoxd3 (ENSPEMG00000028862) #28	Hoxd4 (ENSPEMG00000024627) #29	ENSPEMG00000029322	ENSPEMG00000028623 #30	Hoxd9 (ENSPEMG00000006162) #31	Hoxd10 (ENSPEMG00000030445) #32	ENSPEMG00000018816 #34	Hoxd12 (ENSPEMG00000019240) #33	Hoxd13 (ENSPEMG00000022412) #35	Evx2 (ENSPEMG00000022145)	Lnpk (ENSPEMG00000017827) #36	ENSPEMG00000008662
Murinae	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Mus	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a
Mus_A	ANCESTRAL SPECIES		ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##23	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.a.a #20	ENSGT00390000010116.y.a.b #20	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.a ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Mouse	MODERN SPECIES	11	Sestd1 (ENSMUSG00000042272)	Ccdc141 (ENSMUSG00000044033)	Ttn (ENSMUSG00000051747) #9	Plekha3 (ENSMUSG00000002733) #10	Fkbp7 (ENSMUSG00000002732) #11	Pjvk (ENSMUSG00000075267) #12	Prkra (ENSMUSG00000002731) #14	Osbpl6 (ENSMUSG00000042359) #15	Rbm45 (ENSMUSG00000042369) #16	Cyct (ENSMUSG00000056436)	Pde11a (ENSMUSG00000075270) #17	Ttc30a1 (ENSMUSG00000075271) #20	Ttc30a2 (ENSMUSG00000075272) #20	Ttc30b (ENSMUSG00000075273) #20	Agps (ENSMUSG00000042410) #21	Nfe2l2 (ENSMUSG00000015839) #22	Hnrnpa3 (ENSMUSG00000059005) ##23	Mtx2 (ENSMUSG00000027099) #24	Hoxd1 (ENSMUSG00000042448) #27	Hoxd4 (ENSMUSG00000101174) #29	Hoxd3 (ENSMUSG00000079277) #28	Hoxd8 (ENSMUSG00000027102) #30	Hoxd9 (ENSMUSG00000043342) #31	Hoxd10 (ENSMUSG00000050368) #32	Hoxd11 (ENSMUSG00000042499) #34	Hoxd12 (ENSMUSG00000001823) #33	Hoxd13 (ENSMUSG00000001819) #35	Evx2 (ENSMUSG00000001815)	Lnpk (ENSMUSG00000009207) #36	Atp5g3 (ENSMUSG00000018770)	Atf2 (ENSMUSG00000027104)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000153458.B.f.e	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.y.b #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b.p.a.b ##23	ENSGT00940000153147.m.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a
Steppe mouse	MODERN SPECIES	3326																Nfe2l2 (ENSMSIG00000005673) #22	ENSMSIG00000005709 ##23	ENSMSIG00000005981	ENSMSIG00000006005	Mtx2 (ENSMSIG00000006053) #24	Hoxd1 (ENSMSIG00000006137) #27	Hoxd3 (ENSMSIG00000006158) #28	ENSMSIG00000006186 #29	Hoxd8 (ENSMSIG00000006283) #30	Hoxd9 (ENSMSIG00000006304) #31	Hoxd10 (ENSMSIG00000006313) #32	Hoxd11 (ENSMSIG00000006326) #34	Hoxd12 (ENSMSIG00000006333) #33	Hoxd13 (ENSMSIG00000006348) #35	Evx2 (ENSMSIG00000006361)	Lnpk (ENSMSIG00000006386) #36
spretus	MODERN SPECIES	11	Ube2e3 (MGP_SPRETEiJ_G0024618)	Zfp385b (MGP_SPRETEiJ_G0024616)	Sestd1 (MGP_SPRETEiJ_G0024615)	Ccdc141 (MGP_SPRETEiJ_G0024614)	Ttn (MGP_SPRETEiJ_G0024613) #9	Plekha3 (MGP_SPRETEiJ_G0024612) #10	Fkbp7 (MGP_SPRETEiJ_G0024611) #11	Pjvk (MGP_SPRETEiJ_G0024610) #12	Prkra (MGP_SPRETEiJ_G0024609) #14	Osbpl6 (MGP_SPRETEiJ_G0024608) #15	Rbm45 (MGP_SPRETEiJ_G0024607) #16	Cyct (MGP_SPRETEiJ_G0024606)	Pde11a (MGP_SPRETEiJ_G0024605) #17	MGP_SPRETEiJ_G0024604 #20	Agps (MGP_SPRETEiJ_G0024603) #21	Nfe2l2 (MGP_SPRETEiJ_G0024602) #22	MGP_SPRETEiJ_G0024601 ##23	Mtx2 (MGP_SPRETEiJ_G0024600) #24	Hoxd1 (MGP_SPRETEiJ_G0024599) #27	MGP_SPRETEiJ_G0024598 #29	Hoxd4 (MGP_SPRETEiJ_G0024597) #29	Hoxd3 (MGP_SPRETEiJ_G0024596) #28	Hoxd8 (MGP_SPRETEiJ_G0024595) #30	Hoxd9 (MGP_SPRETEiJ_G0024594) #31	Hoxd10 (MGP_SPRETEiJ_G0024593) #32	Hoxd11 (MGP_SPRETEiJ_G0024592) #34	Hoxd12 (MGP_SPRETEiJ_G0024591) #33	Hoxd13 (MGP_SPRETEiJ_G0024590) #35	Evx2 (MGP_SPRETEiJ_G0024589)	Lnpk (MGP_SPRETEiJ_G0024588) #36	Atp5g3 (MGP_SPRETEiJ_G0024587)
Ryukyu mouse	MODERN SPECIES	11	Sestd1 (MGP_CAROLIEiJ_G0023694)	Ccdc141 (MGP_CAROLIEiJ_G0023693)	Ttn (MGP_CAROLIEiJ_G0023692) #9	Plekha3 (MGP_CAROLIEiJ_G0023691) #10	Fkbp7 (MGP_CAROLIEiJ_G0023690) #11	Pjvk (MGP_CAROLIEiJ_G0023689) #12	Prkra (MGP_CAROLIEiJ_G0023688) #14	Osbpl6 (MGP_CAROLIEiJ_G0023687) #15	Rbm45 (MGP_CAROLIEiJ_G0023686) #16	Cyct (MGP_CAROLIEiJ_G0023685)	MGP_CAROLIEiJ_G0023684	Pde11a (MGP_CAROLIEiJ_G0023683) #17	MGP_CAROLIEiJ_G0023682 #20	MGP_CAROLIEiJ_G0023681 #20	Agps (MGP_CAROLIEiJ_G0023680) #21	Nfe2l2 (MGP_CAROLIEiJ_G0023679) #22	MGP_CAROLIEiJ_G0023678 ##23	Mtx2 (MGP_CAROLIEiJ_G0023677) #24	Hoxd1 (MGP_CAROLIEiJ_G0023676) #27	MGP_CAROLIEiJ_G0023675 #29	Hoxd4 (MGP_CAROLIEiJ_G0023674) #29	Hoxd3 (MGP_CAROLIEiJ_G0023673) #28	Hoxd8 (MGP_CAROLIEiJ_G0023672) #30	Hoxd9 (MGP_CAROLIEiJ_G0023671) #31	Hoxd10 (MGP_CAROLIEiJ_G0023670) #32	Hoxd11 (MGP_CAROLIEiJ_G0023669) #34	Hoxd12 (MGP_CAROLIEiJ_G0023668) #33	Hoxd13 (MGP_CAROLIEiJ_G0023667) #35	Evx2 (MGP_CAROLIEiJ_G0023666)	Lnpk (MGP_CAROLIEiJ_G0023665) #36	Atp5g3 (MGP_CAROLIEiJ_G0023664)
Shrew mouse	MODERN SPECIES	16	Zfp385b (MGP_PahariEiJ_G0025146)	Sestd1 (MGP_PahariEiJ_G0025145)	Ccdc141 (MGP_PahariEiJ_G0025144)	MGP_PahariEiJ_G0025143 #9	Plekha3 (MGP_PahariEiJ_G0025142) #10	Fkbp7 (MGP_PahariEiJ_G0025141) #11	Pjvk (MGP_PahariEiJ_G0025140) #12	Prkra (MGP_PahariEiJ_G0025139) #14	Osbpl6 (MGP_PahariEiJ_G0025138) #15	Rbm45 (MGP_PahariEiJ_G0025137) #16	Cyct (MGP_PahariEiJ_G0025136)	Pde11a (MGP_PahariEiJ_G0025135) #17	MGP_PahariEiJ_G0025134 #20	MGP_PahariEiJ_G0025133 #20	MGP_PahariEiJ_G0025132 #21	Nfe2l2 (MGP_PahariEiJ_G0025131) #22	Hnrnpa3 (MGP_PahariEiJ_G0025130) ##23	Mtx2 (MGP_PahariEiJ_G0025129) #24	Hoxd1 (MGP_PahariEiJ_G0025128) #27	MGP_PahariEiJ_G0025127 #29	Hoxd4 (MGP_PahariEiJ_G0025126) #29	Hoxd3 (MGP_PahariEiJ_G0025125) #28	Hoxd8 (MGP_PahariEiJ_G0025124) #30	Hoxd9 (MGP_PahariEiJ_G0025123) #31	Hoxd10 (MGP_PahariEiJ_G0025122) #32	Hoxd11 (MGP_PahariEiJ_G0025121) #34	Hoxd12 (MGP_PahariEiJ_G0025120) #33	Hoxd13 (MGP_PahariEiJ_G0025119) #35	Evx2 (MGP_PahariEiJ_G0025118)	Lnpk (MGP_PahariEiJ_G0025117) #36	Atp5g3 (MGP_PahariEiJ_G0025116)
Rat	MODERN SPECIES	13	Sestd1 (ENSRNOG00000012603)	Ccdc141 (ENSRNOG00000012580)	Ttn (ENSRNOG00000069271) #9	Plekha3 (ENSRNOG00000011830) #10	Fkbp7 (ENSRNOG00000011758) #11	Pjvk (ENSRNOG00000038165) #12	Prkra (ENSRNOG00000011195) #14	Osbpl6 (ENSRNOG00000010812) #15	Rbm45 (ENSRNOG00000010595) #16	Cyct (ENSRNOG00000024457) #17	Ttc30a (ENSRNOG00000069321) #20	Ttc30a1 (ENSRNOG00000052519) #20	Ttc30b (ENSRNOG00000059460) #20	Agps (ENSRNOG00000001547) #21	ENSRNOG00000066660	Nfe2l2 (ENSRNOG00000001548) #22	Hnrnpa3 (ENSRNOG00000052968) ##23	Mtx2 (ENSRNOG00000001559) #24	Hoxd1 (ENSRNOG00000001572) #27	Hoxd3 (ENSRNOG00000001577) #28	AABR07052559.1 (ENSRNOG00000053144)	Hoxd4 (ENSRNOG00000001578) #29	Hoxd8 (ENSRNOG00000071108) #30	Hoxd9 (ENSRNOG00000001580) #31	Hoxd10 (ENSRNOG00000001581) #32	Hoxd11 (ENSRNOG00000069591) #34	Hoxd12 (ENSRNOG00000001587) #33	Hoxd13 (ENSRNOG00000001588) #35	Evx2 (ENSRNOG00000001589)	Lnpk (ENSRNOG00000001593) #36	Atp5mc3 (ENSRNOG00000001596)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1735	ENSNGAG00000022834	ENSNGAG00000021249	ENSNGAG00000016600 ##9	ENSNGAG00000021911 #9	Plekha3 (ENSNGAG00000020579) #10	Fkbp7 (ENSNGAG00000022641) #11	Pjvk (ENSNGAG00000022020) #12	Prkra (ENSNGAG00000021816) #14	Osbpl6 (ENSNGAG00000014527) #15	Rbm45 (ENSNGAG00000023886) #16	ENSNGAG00000021016	Cyct (ENSNGAG00000023547)	Pde11a (ENSNGAG00000023493) #17	ENSNGAG00000022555 #20	Agps (ENSNGAG00000020263) #21	Nfe2l2 (ENSNGAG00000022809) #22	ENSNGAG00000021745 ##23	Mtx2 (ENSNGAG00000020555) #24	Hoxd1 (ENSNGAG00000021714) #27	Hoxd3 (ENSNGAG00000021055) #28	Hoxd4 (ENSNGAG00000020270) #29	Hoxd8 (ENSNGAG00000011799) #30	Hoxd9 (ENSNGAG00000011105) #31	Hoxd10 (ENSNGAG00000023868) #32	Hoxd11 (ENSNGAG00000023438) #34	Hoxd12 (ENSNGAG00000023455) #33	Hoxd13 (ENSNGAG00000023727) #35	Evx2 (ENSNGAG00000023877)	Lnpk (ENSNGAG00000023466) #36	Atp5g3 (ENSNGAG00000004748)	Atf2 (ENSNGAG00000003870)
Lesser Egyptian jerboa	MODERN SPECIES	75	ENSJJAG00000020744 #9	ENSJJAG00000002374 ##9	ENSJJAG00000002097	ENSJJAG00000009117	ENSJJAG00000015136 ##8	Plekha3 (ENSJJAG00000021299) #10	Fkbp7 (ENSJJAG00000012221) #11	Pjvk (ENSJJAG00000012900) #12	Prkra (ENSJJAG00000013031) #14	Osbpl6 (ENSJJAG00000017863) #15	Rbm45 (ENSJJAG00000001312) #16	Pde11a (ENSJJAG00000018583) #17	ENSJJAG00000012087 #20	ENSJJAG00000014867 #20	Agps (ENSJJAG00000016720) #21	Nfe2l2 (ENSJJAG00000019899) #22	ENSJJAG00000000149 ##23	ENSJJAG00000013228 #24	ENSJJAG00000019952	Hoxd1 (ENSJJAG00000019059) #27	Hoxd10 (ENSJJAG00000011932) #32	Hoxd11 (ENSJJAG00000012344) #34	Hoxd12 (ENSJJAG00000016261) #33	Hoxd13 (ENSJJAG00000016388) #35	Evx2 (ENSJJAG00000017484)	Lnpk (ENSJJAG00000011710) #36	ENSJJAG00000013766	Atp5g3 (ENSJJAG00000022403)	Atf2 (ENSJJAG00000015836)	Chn1 (ENSJJAG00000015001)	ENSJJAG00000014124
Kangaroo rat	MODERN SPECIES	324	Sestd1 (ENSDORG00000012622)	ENSDORG00000027337	ENSDORG00000029701 #9	ENSDORG00000029166 ##8	Plekha3 (ENSDORG00000015344) #10	Fkbp7 (ENSDORG00000013340) #11	Pjvk (ENSDORG00000013339) #12	Prkra (ENSDORG00000013338) #14	Osbpl6 (ENSDORG00000001912) #15	Rbm45 (ENSDORG00000015831) #16	Cyct (ENSDORG00000004101)	ENSDORG00000023150 #20	ENSDORG00000028697 #20	ENSDORG00000028567 #20	Agps (ENSDORG00000006480) #21	Nfe2l2 (ENSDORG00000030173) #22	Hnrnpa3 (ENSDORG00000011155) ##23	Mtx2 (ENSDORG00000003848) #24	Hoxd1 (ENSDORG00000009445) #27	Hoxd3 (ENSDORG00000029389) #28	Hoxd4 (ENSDORG00000028681) #29	ENSDORG00000027655 #30	Hoxd10 (ENSDORG00000009436) #32	ENSDORG00000029219 #34	Hoxd12 (ENSDORG00000009434) #33	Evx2 (ENSDORG00000009432)	Lnpk (ENSDORG00000015736) #36	Atp5g3 (ENSDORG00000012973)	Atf2 (ENSDORG00000024409)	Chn1 (ENSDORG00000002182)	Chrna1 (ENSDORG00000001136)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT01100000263532.A.a.a.b.b.a.a ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00440000038972	ENSGT01100000263523.A #9	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT01100000263523.A #9	ENSGT01100000263523.B ##9	ENSGT00900000143159	ENSGT00900000143154	ENSGT00920000150542	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000154808.a.a	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a	ENSGT00940000156582
Long-tailed chinchilla	MODERN SPECIES	110	ENSCLAG00000014023	ENSCLAG00000015797	ENSCLAG00000015650	ENSCLAG00000016023 ##8	PLEKHA3 (ENSCLAG00000014135) #10	PRKRA (ENSCLAG00000010338) #14	PJVK (ENSCLAG00000010713) #12	OSBPL6 (ENSCLAG00000011433) #15	RBM45 (ENSCLAG00000015215) #16	PDE11A (ENSCLAG00000013013) #17	ENSCLAG00000013714 #20	ENSCLAG00000017938 #20	AGPS (ENSCLAG00000013279) #21	ENSCLAG00000013627	ENSCLAG00000012626	NFE2L2 (ENSCLAG00000013122) #22	HNRNPA3 (ENSCLAG00000012855) ##23	ENSCLAG00000011088	MTX2 (ENSCLAG00000011598) #24	HOXD1 (ENSCLAG00000012505) #27	ENSCLAG00000013605 #28	HOXD4 (ENSCLAG00000014461) #29	ENSCLAG00000011108 #30	HOXD9 (ENSCLAG00000012447) #31	HOXD10 (ENSCLAG00000012482) #32	ENSCLAG00000012563 #34	HOXD12 (ENSCLAG00000013058) #33	HOXD13 (ENSCLAG00000013095) #35	EVX2 (ENSCLAG00000014389)	LNPK (ENSCLAG00000015033) #36	TRIML1 (ENSCLAG00000014494)
Degu	MODERN SPECIES	106	ENSODEG00000007812	ENSODEG00000008370	ENSODEG00000008948 ##8	PLEKHA3 (ENSODEG00000007880) #10	ENSODEG00000008149 #11	PJVK (ENSODEG00000008177) #12	ENSODEG00000008743 #14	OSBPL6 (ENSODEG00000009667) #15	ENSODEG00000019659	RBM45 (ENSODEG00000007959) #16	ENSODEG00000019574	PDE11A (ENSODEG00000010682) #17	ENSODEG00000019592 #20	ENSODEG00000020058 #20	AGPS (ENSODEG00000008272) #21	NFE2L2 (ENSODEG00000010043) #22	ENSODEG00000009265	ENSODEG00000009697	MTX2 (ENSODEG00000008062) #24	ENSODEG00000008879	HOXD1 (ENSODEG00000008961) #27	HOXD3 (ENSODEG00000009722) #28	HOXD4 (ENSODEG00000010297) #29	ENSODEG00000010496 #30	HOXD9 (ENSODEG00000008626) #31	HOXD10 (ENSODEG00000010382) #32	ENSODEG00000010934 #34	HOXD12 (ENSODEG00000008376) #33	HOXD13 (ENSODEG00000008793) #35	EVX2 (ENSODEG00000010771)	ENSODEG00000008992
Guinea pig	MODERN SPECIES	3	CCDC141 (ENSCPOG00000003955)	ENSCPOG00000032370 #9	ENSCPOG00000030784 ##9	ENSCPOG00000038729	ENSCPOG00000034673	ENSCPOG00000036479 ##8	PLEKHA3 (ENSCPOG00000003906) #10	FKBP7 (ENSCPOG00000037159) #11	PJVK (ENSCPOG00000037882) #12	ENSCPOG00000003900 #14	OSBPL6 (ENSCPOG00000002816) #15	RBM45 (ENSCPOG00000000684) #16	PDE11A (ENSCPOG00000000682) #17	ENSCPOG00000000681 #20	AGPS (ENSCPOG00000000679) #21	NFE2L2 (ENSCPOG00000031261) #22	ENSCPOG00000004251 ##23	ENSCPOG00000027250	MTX2 (ENSCPOG00000011099) #24	HOXD1 (ENSCPOG00000005509) #27	HOXD3 (ENSCPOG00000034932) #28	HOXD4 (ENSCPOG00000036552) #29	HOXD8 (ENSCPOG00000015005) #30	HOXD9 (ENSCPOG00000015006) #31	HOXD10 (ENSCPOG00000011368) #32	ENSCPOG00000019766 #34	HOXD12 (ENSCPOG00000005496) #33	HOXD13 (ENSCPOG00000006722) #35	EVX2 (ENSCPOG00000006711)	LNPK (ENSCPOG00000010971) #36	ATP5MC3 (ENSCPOG00000040161)
Naked mole-rat female	MODERN SPECIES	22	CCDC141 (ENSHGLG00000002888)	TTN (ENSHGLG00000036835) #9	ENSHGLG00000018641 #10	FKBP7 (ENSHGLG00000019268) #11	PJVK (ENSHGLG00000011003) #12	ENSHGLG00000010663 #14	ENSHGLG00000003065 #15	ENSHGLG00000040220	ENSHGLG00000045276	ENSHGLG00000007342 #16	ENSHGLG00000006609	ENSHGLG00000005226 #17	TTC30B (ENSHGLG00000042840) #20	ENSHGLG00000036841 #20	AGPS (ENSHGLG00000007541) #21	NFE2L2 (ENSHGLG00000006475) #22	HNRNPA3 (ENSHGLG00000005451) ##23	ENSHGLG00000036655	ENSHGLG00000046644	ENSHGLG00000012734	MTX2 (ENSHGLG00000004177) #24	HOXD1 (ENSHGLG00000004072) #27	HOXD3 (ENSHGLG00000003761) #28	HOXD4 (ENSHGLG00000037842) #29	ENSHGLG00000003577 #30	HOXD10 (ENSHGLG00000033462) #32	HOXD9 (ENSHGLG00000007185) #31	HOXD11 (ENSHGLG00000034527) #34	HOXD12 (ENSHGLG00000005403) #33	HOXD13 (ENSHGLG00000050884) #35	EVX2 (ENSHGLG00000004218)
Sciuridae	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116 #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a.xb	ENSGT00940000156582
Marmotini	ANCESTRAL SPECIES	2	ENSGT01100000263532.A.a.a.b.b.a.a ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a.xb.a	ENSGT00940000156582
Alpin marmot	MODERN SPECIES	5															AGPS (ENSMMMG00000023778) #21	NFE2L2 (ENSMMMG00000023776) #22	MTX2 (ENSMMMG00000023772) #24	HOXD3 (ENSMMMG00000023768) #28	HOXD4 (ENSMMMG00000023767) #29	ENSMMMG00000023765 #30	HOXD9 (ENSMMMG00000023764) #31	HOXD10 (ENSMMMG00000023763) #32	ENSMMMG00000023762 #34	HOXD12 (ENSMMMG00000023760) #33	HOXD13 (ENSMMMG00000023759) #35	LNPK (ENSMMMG00000023755) #36	ENSMMMG00000023748	ATF2 (ENSMMMG00000023733)	ENSMMMG00000023730	CHN1 (ENSMMMG00000023718)	CHRNA1 (ENSMMMG00000023717)
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT01100000263532.A.a.a.b.b.a.a ##8	ENSGT01100000263532.A.a.a.a.b.c.a #8	ENSGT00900000143154	ENSGT01100000263523.B ##9	ENSGT01100000263532.C.c.b ##8	ENSGT00940000155850 #10	ENSGT00940000159964 #11	ENSGT00950000183140.a.b #12	ENSGT00940000157618 #14	ENSGT00940000156791 #15	ENSGT00680000100059 #16	ENSGT00940000157883.a.b.e.a	ENSGT00940000162151 #17	ENSGT00390000010116.gb #20	ENSGT00940000156112 #21	ENSGT00950000182892.a.a.b #22	ENSGT00940000153147.m.a.a.a.b.a.b ##23	ENSGT00950000182919.C #24	ENSGT00940000161892 #27	ENSGT00940000160027 #28	ENSGT00940000157270 #29	ENSGT00940000161653 #30	ENSGT00940000161503 #31	ENSGT00940000158266 #32	ENSGT00940000161308 #34	ENSGT00940000159938 #33	ENSGT00940000161457 #35	ENSGT00940000161025	ENSGT00390000001859 #36	ENSGT00940000154298.a.a.xb.a	ENSGT00940000156582
Arctic ground squirrel	MODERN SPECIES	96	ENSUPAG00010005828 ##8	ENSUPAG00010005845 ##8	ENSUPAG00010005849 #8	ENSUPAG00010005854	ENSUPAG00010005857 ##8	PLEKHA3 (ENSUPAG00010005864) #10	FKBP7 (ENSUPAG00010005868) #11	PJVK (ENSUPAG00010005878) #12	PRKRA (ENSUPAG00010005881) #14	OSBPL6 (ENSUPAG00010005891) #15	RBM45 (ENSUPAG00010006036) #16	ENSUPAG00010006054	PDE11A (ENSUPAG00010006062) #17	ENSUPAG00010006082 #20	AGPS (ENSUPAG00010006084) #21	NFE2L2 (ENSUPAG00010006108) #22	HNRNPA3 (ENSUPAG00010006133) ##23
Squirrel	MODERN SPECIES	109	ENSSTOG00000034976 #8	ENSSTOG00000033165	ENSSTOG00000032305	ENSSTOG00000032899 ##9	ENSSTOG00000006208 ##8	PLEKHA3 (ENSSTOG00000006191) #10	FKBP7 (ENSSTOG00000006176) #11	PJVK (ENSSTOG00000028411) #12	PRKRA (ENSSTOG00000006156) #14	OSBPL6 (ENSSTOG00000006092) #15	RBM45 (ENSSTOG00000002708) #16	ENSSTOG00000008853	PDE11A (ENSSTOG00000012639) #17	ENSSTOG00000003267 #20	AGPS (ENSSTOG00000012623) #21	NFE2L2 (ENSSTOG00000000313) #22	HNRNPA3 (ENSSTOG00000025125) ##23	ENSSTOG00000030884	MTX2 (ENSSTOG00000014688) #24	HOXD1 (ENSSTOG00000012230) #27	HOXD3 (ENSSTOG00000014680) #28	HOXD4 (ENSSTOG00000029055) #29	ENSSTOG00000023453 #30	HOXD9 (ENSSTOG00000026761) #31	HOXD10 (ENSSTOG00000003935) #32	HOXD12 (ENSSTOG00000004918) #33	HOXD13 (ENSSTOG00000004117) #35	EVX2 (ENSSTOG00000014512)	LNPK (ENSSTOG00000014498) #36	ENSSTOG00000013572	ATF2 (ENSSTOG00000014079)
Eurasian red squirrel	MODERN SPECIES	12	CCDC141 (ENSSVLG00005020180)	ENSSVLG00005008368 ##8	PLEKHA3 (ENSSVLG00005005206) #10	FKBP7 (ENSSVLG00005005181) #11	ENSSVLG00005005163	PJVK (ENSSVLG00005005095) #12	PRKRA (ENSSVLG00005005027) #14	OSBPL6 (ENSSVLG00005004465) #15	RBM45 (ENSSVLG00005004137) #16	ENSSVLG00005004113	PDE11A (ENSSVLG00005004050) #17	ENSSVLG00005004018 #20	ENSSVLG00005004006 #20	ENSSVLG00005003996 #20	AGPS (ENSSVLG00005003959) #21	ENSSVLG00005003903 #22	ENSSVLG00005003881 ##23	MTX2 (ENSSVLG00005003812) #24	HOXD1 (ENSSVLG00005003762) #27	HOXD4 (ENSSVLG00005003676) #29	HOXD8 (ENSSVLG00005003645) #30	HOXD9 (ENSSVLG00005003618) #31	HOXD10 (ENSSVLG00005003599) #32	HOXD11 (ENSSVLG00005003581) #34	HOXD12 (ENSSVLG00005003565) #33	HOXD13 (ENSSVLG00005003554) #35	EVX2 (ENSSVLG00005003539)	LNPK (ENSSVLG00005003500) #36	ENSSVLG00005003466	ENSSVLG00005003430	ENSSVLG00005003279