Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Amniota	ANCESTRAL SPECIES	9	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765
Mammalia	ANCESTRAL SPECIES	47	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000159943 #10	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00980000201734	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Theria	ANCESTRAL SPECIES	3	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173 #32	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Eutheria	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Microbat	DUPLICATION
Microbat	MODERN SPECIES	974	ZFYVE9 (ENSMLUG00000001012) #7	ENSMLUG00000016884 #8	TXNDC12 (ENSMLUG00000016872) #9	RAB3B (ENSMLUG00000016868) #10	NRDC (ENSMLUG00000009233) #11	OSBPL9 (ENSMLUG00000009199) #12	EPS15 (ENSMLUG00000004454) #13	TTC39A (ENSMLUG00000004443) #14	ENSMLUG00000004439 #15	C1orf185 (ENSMLUG00000023716) #16	CDKN2C (ENSMLUG00000006627) #17	FAF1 (ENSMLUG00000006252) #18	DMRTA2 (ENSMLUG00000006249) #19	ELAVL4 (ENSMLUG00000006226) #20	BEND5 (ENSMLUG00000016578) #21	ENSMLUG00000016567 #22	SPATA6 (ENSMLUG00000011417) #23	SLC5A9 (ENSMLUG00000010198) #24	ENSMLUG00000024145 #25	ENSMLUG00000022445 #26	TRABD2B (ENSMLUG00000010918) #27	STIL (ENSMLUG00000006395) #28	TAL1 (ENSMLUG00000006388) #29	PDZK1IP1 (ENSMLUG00000006083) #30	CYP4X1 (ENSMLUG00000011781) #31	ENSMLUG00000002780 #32	ENSMLUG00000025621 #33	ENSMLUG00000024150 #34	CYP4B1 (ENSMLUG00000002776) #35	ENSMLUG00000014593 #36	TEX38 (ENSMLUG00000029002) #37
Microbat	MODERN SPECIES	1681												STX18 (ENSMLUG00000010496)	LYAR (ENSMLUG00000002133)	ENSMLUG00000012706	OTOP1 (ENSMLUG00000009881)	ENSMLUG00000026822 ##22	DRD5 (ENSMLUG00000013453)	ENSMLUG00000013455
Greater horseshoe bat	MODERN SPECIES	27	ENSRFEG00010003696 #8	TXNDC12 (ENSRFEG00010003659) #9	RAB3B (ENSRFEG00010003630) #10	NRDC (ENSRFEG00010003552) #11	OSBPL9 (ENSRFEG00010003405) #12	ENSRFEG00010003316	EPS15 (ENSRFEG00010003189) #13	TTC39A (ENSRFEG00010003039) #14	RNF11 (ENSRFEG00010002953) #15	ENSRFEG00010002937	CDKN2C (ENSRFEG00010002917) #17	FAF1 (ENSRFEG00010002825) #18	DMRTA2 (ENSRFEG00010002791) #19	ELAVL4 (ENSRFEG00010002640) #20	BEND5 (ENSRFEG00010002514) #21	AGBL4 (ENSRFEG00010002410) #22	SPATA6 (ENSRFEG00010002287) #23	ENSRFEG00010002251	SLC5A9 (ENSRFEG00010002222) #24	ENSRFEG00010002204	ENSRFEG00010002180 #25	ENSRFEG00010002154 #26	ENSRFEG00010002138	TRABD2B (ENSRFEG00010002104) #27	FOXD2 (ENSRFEG00010002087)	FOXE3 (ENSRFEG00010002079)	CMPK1 (ENSRFEG00010002044)	ENSRFEG00010002024	STIL (ENSRFEG00010001982) #28	TAL1 (ENSRFEG00010001940) #29	PDZK1IP1 (ENSRFEG00010001905) #30
Megabat	MODERN SPECIES	141															ELAVL4 (ENSPVAG00000003632) #20	AGBL4 (ENSPVAG00000003630) #22	SPATA6 (ENSPVAG00000003628) #23	SLC5A9 (ENSPVAG00000003625) #24
Equus	ANCESTRAL SPECIES	2	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.q.b #32	ENSGT00940000155173.q.a.b #32	ENSGT00940000161441.c.b.a ##33	ENSGT00940000155173.q.a.a #32	ENSGT00940000161441.c.a.a ##33
Donkey	MODERN SPECIES	25	TXNDC12 (ENSEASG00005029657) #9	RAB3B (ENSEASG00005027002) #10	NRDC (ENSEASG00005011045) #11	OSBPL9 (ENSEASG00005010962) #12	ENSEASG00005030901 #12	ENSEASG00005010925	EPS15 (ENSEASG00005010751) #13	TTC39A (ENSEASG00005010736) #14	RNF11 (ENSEASG00005037659) #15	C1orf185 (ENSEASG00005037128) #16	CDKN2C (ENSEASG00005010733) #17	FAF1 (ENSEASG00005010732) #18	DMRTA2 (ENSEASG00005037248) #19	ELAVL4 (ENSEASG00005010728) #20	BEND5 (ENSEASG00005010723) #21	AGBL4 (ENSEASG00005010721) #22	SPATA6 (ENSEASG00005010718) #23	SLC5A9 (ENSEASG00005010710) #24	TRABD2B (ENSEASG00005010700) #27	CMPK1 (ENSEASG00005010695)	STIL (ENSEASG00005010657) #28	ENSEASG00005038126 #29	ENSEASG00005023820 #30	ENSEASG00005034479	ENSEASG00005010647 #31	ENSEASG00005010640 #32	ENSEASG00005010633 #32	ENSEASG00005014485 #32	ENSEASG00005010169 #32	ENSEASG00005037264 ##33	ENSEASG00005010627 #32
Horse	DUPLICATION
Horse	MODERN SPECIES	11	NRDC (ENSECAG00000021612) #11	ENSECAG00000017935 #12	CALR4 (ENSECAG00000015205)	EPS15 (ENSECAG00000020824) #13	TTC39A (ENSECAG00000015196) #14	RNF11 (ENSECAG00000036831) #15	ENSECAG00000055972	C2H1orf185 (ENSECAG00000025041) #16	CDKN2C (ENSECAG00000004817) #17	FAF1 (ENSECAG00000008495) #18	ENSECAG00000044105	DMRTA2 (ENSECAG00000029061) #19	ELAVL4 (ENSECAG00000022284) #20	ENSECAG00000059132 #22	BEND5 (ENSECAG00000051417) #21	ENSECAG00000055301 #22	SPATA6 (ENSECAG00000000158) #23	SLC5A9 (ENSECAG00000011684) #24	TRABD2B (ENSECAG00000022697) #27	FOXE3 (ENSECAG00000049916)	CMPK1 (ENSECAG00000000428)	STIL (ENSECAG00000011152) #28	TAL1 (ENSECAG00000018746) #29	CYP4X1 (ENSECAG00000020100) #31	ENSECAG00000033081 ##33	ENSECAG00000027949 #32	ENSECAG00000045102	ENSECAG00000046409 #32	ENSECAG00000036794 #32	ENSECAG00000048848 ##33	ENSECAG00000028078 #32
Horse	MODERN SPECIES	11	ENSECAG00000032332	RAB3B (ENSECAG00000015669) #10	NRDC (ENSECAG00000021612) #11	ENSECAG00000017935 #12	CALR4 (ENSECAG00000015205)	EPS15 (ENSECAG00000020824) #13	TTC39A (ENSECAG00000015196) #14	RNF11 (ENSECAG00000036831) #15	ENSECAG00000055972	C2H1orf185 (ENSECAG00000025041) #16	CDKN2C (ENSECAG00000004817) #17	FAF1 (ENSECAG00000008495) #18	ENSECAG00000044105	DMRTA2 (ENSECAG00000029061) #19	ELAVL4 (ENSECAG00000022284) #20	ENSECAG00000059132 #22	BEND5 (ENSECAG00000051417) #21	ENSECAG00000055301 #22	SPATA6 (ENSECAG00000000158) #23	SLC5A9 (ENSECAG00000011684) #24	TRABD2B (ENSECAG00000022697) #27	FOXE3 (ENSECAG00000049916)	CMPK1 (ENSECAG00000000428)	STIL (ENSECAG00000011152) #28	TAL1 (ENSECAG00000018746) #29	CYP4X1 (ENSECAG00000020100) #31	ENSECAG00000033081 ##33	ENSECAG00000027949 #32	ENSECAG00000045102	ENSECAG00000046409 #32	ENSECAG00000036794 #32
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831.db.a #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m.e.a.b #32	ENSGT00940000155173.m.e.a.a #32	ENSGT00940000155173.n #32	ENSGT00940000155173.m.f #32	ENSGT00940000161441.d #33
Red fox	MODERN SPECIES	9	RAB3B (ENSVVUG00000004769) #10	NRDC (ENSVVUG00000004788) #11	OSBPL9 (ENSVVUG00000004835) #12	EPS15 (ENSVVUG00000004902) #13	TTC39A (ENSVVUG00000005650) #14	RNF11 (ENSVVUG00000005971) #15	ENSVVUG00000005976	C1orf185 (ENSVVUG00000005980) #16	CDKN2C (ENSVVUG00000006026) #17	FAF1 (ENSVVUG00000006069) #18	ENSVVUG00000006081	ENSVVUG00000006087	ENSVVUG00000006092	ELAVL4 (ENSVVUG00000006175) #20	BEND5 (ENSVVUG00000006293) #21	ENSVVUG00000006309 #22	SPATA6 (ENSVVUG00000006346) #23	SLC5A9 (ENSVVUG00000006359) #24	TRABD2B (ENSVVUG00000006378) #27	CMPK1 (ENSVVUG00000006426)	STIL (ENSVVUG00000006441) #28	ENSVVUG00000006648 #29	PDZK1IP1 (ENSVVUG00000006655) #30	CYP4X1 (ENSVVUG00000006664) #31	ENSVVUG00000006690 #32	ENSVVUG00000006722 #32	ENSVVUG00000006748 #32	ENSVVUG00000006767 #32	CYP4B1 (ENSVVUG00000007000) #33	EFCAB14 (ENSVVUG00000007017) #36	TEX38 (ENSVVUG00000007029) #37
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831.db.a #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m.e.a.b #32	ENSGT00940000155173.m.e.a.a #32	ENSGT00940000155173.m.f #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36
Dingo	DUPLICATION
Dingo	MODERN SPECIES	344	TXNDC12 (ENSCAFG00020011048) #9	RAB3B (ENSCAFG00020011054) #10	NRDC (ENSCAFG00020011213) #11	OSBPL9 (ENSCAFG00020013459) #12	EPS15 (ENSCAFG00020013470) #13	TTC39A (ENSCAFG00020013487) #14	RNF11 (ENSCAFG00020013494) #15	C1orf185 (ENSCAFG00020013497) #16	CDKN2C (ENSCAFG00020013503) #17	ENSCAFG00020013515 #18	ENSCAFG00020013544	ENSCAFG00020013547	DMRTA2 (ENSCAFG00020013554) #19	ELAVL4 (ENSCAFG00020013581) #20	BEND5 (ENSCAFG00020014470) #21	ENSCAFG00020014471 #22	ENSCAFG00020014472 #22	SPATA6 (ENSCAFG00020014474) #23	SLC5A9 (ENSCAFG00020014477) #24	TRABD2B (ENSCAFG00020014503) #27	FOXD2 (ENSCAFG00020014506)	FOXE3 (ENSCAFG00020014507)	CMPK1 (ENSCAFG00020014509)	STIL (ENSCAFG00020014512) #28	TAL1 (ENSCAFG00020014522) #29	PDZK1IP1 (ENSCAFG00020014525) #30	CYP4X1 (ENSCAFG00020014528) #31	ENSCAFG00020014556 #32	ENSCAFG00020014560 #32	ENSCAFG00020014722 #32	ENSCAFG00020014728 #32
Dingo	MODERN SPECIES	344	RAB3B (ENSCAFG00020011054) #10	NRDC (ENSCAFG00020011213) #11	OSBPL9 (ENSCAFG00020013459) #12	EPS15 (ENSCAFG00020013470) #13	TTC39A (ENSCAFG00020013487) #14	RNF11 (ENSCAFG00020013494) #15	C1orf185 (ENSCAFG00020013497) #16	CDKN2C (ENSCAFG00020013503) #17	ENSCAFG00020013515 #18	ENSCAFG00020013544	ENSCAFG00020013547	DMRTA2 (ENSCAFG00020013554) #19	ELAVL4 (ENSCAFG00020013581) #20	BEND5 (ENSCAFG00020014470) #21	ENSCAFG00020014471 #22	ENSCAFG00020014472 #22	SPATA6 (ENSCAFG00020014474) #23	SLC5A9 (ENSCAFG00020014477) #24	TRABD2B (ENSCAFG00020014503) #27	FOXD2 (ENSCAFG00020014506)	FOXE3 (ENSCAFG00020014507)	CMPK1 (ENSCAFG00020014509)	STIL (ENSCAFG00020014512) #28	TAL1 (ENSCAFG00020014522) #29	PDZK1IP1 (ENSCAFG00020014525) #30	CYP4X1 (ENSCAFG00020014528) #31	ENSCAFG00020014556 #32	ENSCAFG00020014560 #32	ENSCAFG00020014722 #32	ENSCAFG00020014728 #32	CYP4B1 (ENSCAFG00020014733) #33
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Ursidae	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT01010000229967	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546.h #24	ENSGT00940000157546.g #24	ENSGT00940000161273 #27	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Ursus	ANCESTRAL SPECIES	19	ENSGT00940000154290.a #7	ENSGT00950000185079.c	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546.h #24	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886	ENSGT00400000024146	ENSGT00940000155505.a
Polar bear	MODERN SPECIES	218	ENSUMAG00000022804	RAB3B (ENSUMAG00000022807) #10	NRDC (ENSUMAG00000022809) #11	OSBPL9 (ENSUMAG00000022814) #12	EPS15 (ENSUMAG00000022892) #13	TTC39A (ENSUMAG00000023064) #14	RNF11 (ENSUMAG00000023091) #15	C1orf185 (ENSUMAG00000023093) #16	CDKN2C (ENSUMAG00000023096) #17	FAF1 (ENSUMAG00000023099) #18	ENSUMAG00000023105	ENSUMAG00000023107	ELAVL4 (ENSUMAG00000023149) #20	ENSUMAG00000023280	ENSUMAG00000023282 #21	ENSUMAG00000023284 #22	SPATA6 (ENSUMAG00000023285) #23	ENSUMAG00000023291 #24	CMPK1 (ENSUMAG00000023298)	STIL (ENSUMAG00000023306) #28	PDZK1IP1 (ENSUMAG00000023333) #30	CYP4X1 (ENSUMAG00000023337) #31	ENSUMAG00000023368 #32	CYP4B1 (ENSUMAG00000023554) #33	EFCAB14 (ENSUMAG00000023556) #36	TEX38 (ENSUMAG00000023557) #37	ATPAF1 (ENSUMAG00000023558)	MOB3C (ENSUMAG00000023559)	MKNK1 (ENSUMAG00000023560)	KNCN (ENSUMAG00000023562)	DMBX1 (ENSUMAG00000023564)
Giant Panda	MODERN SPECIES	11	RAB3B (ENSAMEG00000009140) #10	ENSAMEG00000027180	NRDC (ENSAMEG00000009034) #11	OSBPL9 (ENSAMEG00000008968) #12	EPS15 (ENSAMEG00000017515) #13	TTC39A (ENSAMEG00000017488) #14	RNF11 (ENSAMEG00000017484) #15	C1orf185 (ENSAMEG00000024320) #16	CDKN2C (ENSAMEG00000028782) #17	ENSAMEG00000031167	FAF1 (ENSAMEG00000017472) #18	DMRTA2 (ENSAMEG00000026233) #19	ENSAMEG00000029933	ELAVL4 (ENSAMEG00000017455) #20	BEND5 (ENSAMEG00000009379) #21	AGBL4 (ENSAMEG00000009391) #22	SPATA6 (ENSAMEG00000008559) #23	SLC5A9 (ENSAMEG00000008581) #24	TRABD2B (ENSAMEG00000018869) #27	CMPK1 (ENSAMEG00000000012)	STIL (ENSAMEG00000000013) #28	TAL1 (ENSAMEG00000029725) #29	PDZK1IP1 (ENSAMEG00000024007) #30	CYP4X1 (ENSAMEG00000000016) #31	ENSAMEG00000029837 #32	CYP4B1 (ENSAMEG00000014075) #33	EFCAB14 (ENSAMEG00000014050) #36	TEX38 (ENSAMEG00000020215) #37	ENSAMEG00000025041	ENSAMEG00000014047	MKNK1 (ENSAMEG00000014008)
Mustelinae	ANCESTRAL SPECIES																ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m.d #32	ENSGT00940000155173.m.c.b #32	ENSGT00940000155173.m.c.a.b #32	ENSGT00940000155173.m.c.a.a.a #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36
Ferret	DUPLICATION
Ferret	MODERN SPECIES	167														ENSMPUG00000012350 #22	BEND5 (ENSMPUG00000012351) #21	AGBL4 (ENSMPUG00000012352) #22	SPATA6 (ENSMPUG00000012355) #23	SLC5A9 (ENSMPUG00000012383) #24	TRABD2B (ENSMPUG00000012386) #27	ENSMPUG00000012391	CMPK1 (ENSMPUG00000012394)	STIL (ENSMPUG00000012399) #28	TAL1 (ENSMPUG00000012410) #29	PDZK1IP1 (ENSMPUG00000012421) #30	CYP4X1 (ENSMPUG00000012436) #31	ENSMPUG00000012443 #32	ENSMPUG00000012510 #32	ENSMPUG00000012515 #32	ENSMPUG00000012694 #32	CYP4B1 (ENSMPUG00000012724) #33	EFCAB14 (ENSMPUG00000012730) #36
Ferret	MODERN SPECIES	167																ENSMPUG00000012350 #22	BEND5 (ENSMPUG00000012351) #21	AGBL4 (ENSMPUG00000012352) #22	SPATA6 (ENSMPUG00000012355) #23	SLC5A9 (ENSMPUG00000012383) #24	TRABD2B (ENSMPUG00000012386) #27	ENSMPUG00000012391	CMPK1 (ENSMPUG00000012394)	STIL (ENSMPUG00000012399) #28	TAL1 (ENSMPUG00000012410) #29	PDZK1IP1 (ENSMPUG00000012421) #30	CYP4X1 (ENSMPUG00000012436) #31	ENSMPUG00000012443 #32	ENSMPUG00000012510 #32	ENSMPUG00000012515 #32	ENSMPUG00000012694 #32
American mink	DUPLICATION
American mink	MODERN SPECIES	344															BEND5 (ENSNVIG00000002432) #21	ENSNVIG00000002411 #22	SPATA6 (ENSNVIG00000002346) #23	SLC5A9 (ENSNVIG00000002273) #24	TRABD2B (ENSNVIG00000002254) #27	FOXD2 (ENSNVIG00000002242)	CMPK1 (ENSNVIG00000002204)	STIL (ENSNVIG00000002103) #28	TAL1 (ENSNVIG00000002084) #29	PDZK1IP1 (ENSNVIG00000002077) #30	CYP4X1 (ENSNVIG00000002045) #31	ENSNVIG00000002014 #32	ENSNVIG00000001905 #32
American mink	MODERN SPECIES	591																ENSNVIG00000017521 #22
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m.a.b #32	ENSGT00940000155173.m.a.a #32	ENSGT00940000155173.m.b #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36
Cat	MODERN SPECIES	239	BTF3L4 (ENSFCAG00000024164) #8	TXNDC12 (ENSFCAG00000023885) #10	ENSFCAG00000031410	NRDC (ENSFCAG00000022018) #11	OSBPL9 (ENSFCAG00000010298) #12	EPS15 (ENSFCAG00000027650) #13	TTC39A (ENSFCAG00000014565) #14	RNF11 (ENSFCAG00000035271) #15	CC1H1orf185 (ENSFCAG00000043741) #16	CDKN2C (ENSFCAG00000033306) #17	ENSFCAG00000028644	FAF1 (ENSFCAG00000011327) #18	DMRTA2 (ENSFCAG00000045950) #19	ELAVL4 (ENSFCAG00000010438) #20	ENSFCAG00000022016	AGBL4 (ENSFCAG00000000550) #22	SPATA6 (ENSFCAG00000029729) #23	SLC5A9 (ENSFCAG00000000548) #24	TRABD2B (ENSFCAG00000000546) #27	FOXD2 (ENSFCAG00000044804)	FOXE3 (ENSFCAG00000046511)	CMPK1 (ENSFCAG00000025426)	STIL (ENSFCAG00000012141) #28	TAL1 (ENSFCAG00000045414) #29	PDZK1IP1 (ENSFCAG00000019308) #30	CYP4X1 (ENSFCAG00000007168) #31	CYP4A37 (ENSFCAG00000040744) #32	ENSFCAG00000037991 #32	ENSFCAG00000038068 #32	CYP4B1 (ENSFCAG00000002762) #33	EFCAB14 (ENSFCAG00000004536) #36
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00950000182922.a.a.a.b.a.b.a.a.c.a.a	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m.a.b #32	ENSGT00940000155173.m.a.a #32	ENSGT00940000155173.m.b #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36
Tiger	DUPLICATION
Tiger	MODERN SPECIES	100	TXNDC12 (ENSPTIG00000009168) #9	RAB3B (ENSPTIG00000010883) #10	NRDC (ENSPTIG00000011593) #11	ENSPTIG00000014000	OSBPL9 (ENSPTIG00000014514) #12	EPS15 (ENSPTIG00000021361) #13	TTC39A (ENSPTIG00000006822) #14	RNF11 (ENSPTIG00000012147) #15	C1orf185 (ENSPTIG00000012429) #16	CDKN2C (ENSPTIG00000013155) #17	FAF1 (ENSPTIG00000014264) #18	ELAVL4 (ENSPTIG00000016727) #20	ENSPTIG00000019852 #22	ENSPTIG00000005063	BEND5 (ENSPTIG00000020902) #21	AGBL4 (ENSPTIG00000021182) #22	SPATA6 (ENSPTIG00000021470) #23	SLC5A9 (ENSPTIG00000007011) #24	TRABD2B (ENSPTIG00000009870) #27	CMPK1 (ENSPTIG00000011122)	STIL (ENSPTIG00000011691) #28	TAL1 (ENSPTIG00000017616) #29	PDZK1IP1 (ENSPTIG00000018010) #30	CYP4X1 (ENSPTIG00000018303) #31	CYP4A37 (ENSPTIG00000018827) #32	CYP4A106 (ENSPTIG00000020491) #32	ENSPTIG00000020880 #32	CYP4B1 (ENSPTIG00000021254) #33	EFCAB14 (ENSPTIG00000021900) #36	TEX38 (ENSPTIG00000021969) #37	ATPAF1 (ENSPTIG00000022016)
Tiger	MODERN SPECIES	100	CC2D1B (ENSPTIG00000018871)	ZFYVE9 (ENSPTIG00000020130) #7	ENSPTIG00000006624 #8	TXNDC12 (ENSPTIG00000009168) #9	RAB3B (ENSPTIG00000010883) #10	NRDC (ENSPTIG00000011593) #11	ENSPTIG00000014000	OSBPL9 (ENSPTIG00000014514) #12	EPS15 (ENSPTIG00000021361) #13	TTC39A (ENSPTIG00000006822) #14	RNF11 (ENSPTIG00000012147) #15	C1orf185 (ENSPTIG00000012429) #16	CDKN2C (ENSPTIG00000013155) #17	FAF1 (ENSPTIG00000014264) #18	ELAVL4 (ENSPTIG00000016727) #20	ENSPTIG00000019852 #22	ENSPTIG00000005063	BEND5 (ENSPTIG00000020902) #21	AGBL4 (ENSPTIG00000021182) #22	SPATA6 (ENSPTIG00000021470) #23	SLC5A9 (ENSPTIG00000007011) #24	TRABD2B (ENSPTIG00000009870) #27	CMPK1 (ENSPTIG00000011122)	STIL (ENSPTIG00000011691) #28	TAL1 (ENSPTIG00000017616) #29	PDZK1IP1 (ENSPTIG00000018010) #30	CYP4X1 (ENSPTIG00000018303) #31	CYP4A37 (ENSPTIG00000018827) #32	CYP4A106 (ENSPTIG00000020491) #32	ENSPTIG00000020880 #32	CYP4B1 (ENSPTIG00000021254) #33
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00950000182922.a.a.a.b.a.b.a.a.c.a.a	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.m.a.b #32	ENSGT00940000155173.m.a.a #32	ENSGT00940000155173.m.b #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36
lion	MODERN SPECIES	8	RAB3B (ENSPLOG00000019621) #10	NRDC (ENSPLOG00000019705) #11	ENSPLOG00000004732	ENSPLOG00000004872 #12	EPS15 (ENSPLOG00000005145) #13	ENSPLOG00000005215	TTC39A (ENSPLOG00000005228) #14	RNF11 (ENSPLOG00000005279) #15	C1orf185 (ENSPLOG00000005287) #16	CDKN2C (ENSPLOG00000005297) #17	FAF1 (ENSPLOG00000005328) #18	ENSPLOG00000005409	DMRTA2 (ENSPLOG00000005423) #19	ENSPLOG00000005447	ELAVL4 (ENSPLOG00000005634) #20	AGBL4 (ENSPLOG00000006006) #22	BEND5 (ENSPLOG00000006114) #21	SPATA6 (ENSPLOG00000006148) #23	SLC5A9 (ENSPLOG00000006218) #24	TRABD2B (ENSPLOG00000006352) #27	FOXD2 (ENSPLOG00000006398)	FOXE3 (ENSPLOG00000006409)	CMPK1 (ENSPLOG00000006430)	STIL (ENSPLOG00000006499) #28	TAL1 (ENSPLOG00000006549) #29	PDZK1IP1 (ENSPLOG00000006576) #30	CYP4X1 (ENSPLOG00000006599) #31	ENSPLOG00000006700 #32	ENSPLOG00000006991 #32	ENSPLOG00000007060 #32	ENSPLOG00000007122 #33
leopard	DUPLICATION
leopard	MODERN SPECIES	16	NRDC (ENSPPRG00000005332) #11	ENSPPRG00000003302	OSBPL9 (ENSPPRG00000002600) #12	EPS15 (ENSPPRG00000014230) #13	ENSPPRG00000011797	TTC39A (ENSPPRG00000010046) #14	RNF11 (ENSPPRG00000007187) #15	C1orf185 (ENSPPRG00000006868) #16	CDKN2C (ENSPPRG00000005623) #17	FAF1 (ENSPPRG00000005301) #18	DMRTA2 (ENSPPRG00000003651) #19	ELAVL4 (ENSPPRG00000002764) #20	ENSPPRG00000001721 #22	ENSPPRG00000017680	BEND5 (ENSPPRG00000022625) #21	AGBL4 (ENSPPRG00000022863) #22	SPATA6 (ENSPPRG00000023213) #23	SLC5A9 (ENSPPRG00000020008) #24	TRABD2B (ENSPPRG00000013314) #27	FOXD2 (ENSPPRG00000017402)	FOXE3 (ENSPPRG00000012774)	ENSPPRG00000012334	STIL (ENSPPRG00000010998) #28	TAL1 (ENSPPRG00000008561) #29	PDZK1IP1 (ENSPPRG00000008341) #30	CYP4X1 (ENSPPRG00000008167) #31	CYP4A37 (ENSPPRG00000007723) #32	CYP4A106 (ENSPPRG00000005233) #32	ENSPPRG00000004202 #32	CYP4B1 (ENSPPRG00000022661) #33	EFCAB14 (ENSPPRG00000023530) #36
leopard	MODERN SPECIES	16	ENSPPRG00000007572 #8	TXNDC12 (ENSPPRG00000006551) #9	RAB3B (ENSPPRG00000006055) #10	NRDC (ENSPPRG00000005332) #11	ENSPPRG00000003302	OSBPL9 (ENSPPRG00000002600) #12	EPS15 (ENSPPRG00000014230) #13	ENSPPRG00000011797	TTC39A (ENSPPRG00000010046) #14	RNF11 (ENSPPRG00000007187) #15	C1orf185 (ENSPPRG00000006868) #16	CDKN2C (ENSPPRG00000005623) #17	FAF1 (ENSPPRG00000005301) #18	DMRTA2 (ENSPPRG00000003651) #19	ELAVL4 (ENSPPRG00000002764) #20	ENSPPRG00000001721 #22	ENSPPRG00000017680	BEND5 (ENSPPRG00000022625) #21	AGBL4 (ENSPPRG00000022863) #22	SPATA6 (ENSPPRG00000023213) #23	SLC5A9 (ENSPPRG00000020008) #24	TRABD2B (ENSPPRG00000013314) #27	FOXD2 (ENSPPRG00000017402)	FOXE3 (ENSPPRG00000012774)	ENSPPRG00000012334	STIL (ENSPPRG00000010998) #28	TAL1 (ENSPPRG00000008561) #29	PDZK1IP1 (ENSPPRG00000008341) #30	CYP4X1 (ENSPPRG00000008167) #31	CYP4A37 (ENSPPRG00000007723) #32	CYP4A106 (ENSPPRG00000005233) #32
Artiodactyla	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Suina	ANCESTRAL SPECIES	27	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b.c #30	ENSGT00940000160927 #31	ENSGT00940000155173.g.a #32	ENSGT00940000154660.b.d.b #30	ENSGT00940000155173.g.b #32	ENSGT00940000161441.d #33	ENSGT00390000011196 #36
Pig	MODERN SPECIES	14	OSBPL9 (ENSSSCG00000021292) #12	ENSSSCG00000059473	EPS15 (ENSSSCG00000003872) #13	ENSSSCG00000055459	TTC39A (ENSSSCG00000003875) #14	RNF11 (ENSSSCG00000031172) #15	C1orf185 (ENSSSCG00000031188) #16	CDKN2C (ENSSSCG00000003876) #17	FAF1 (ENSSSCG00000003877) #18	ENSSSCG00000049732	DMRTA2 (ENSSSCG00000030552) #19	ELAVL4 (ENSSSCG00000037291) #20	ENSSSCG00000052381	ENSSSCG00000049367	BEND5 (ENSSSCG00000063412) #21	ENSSSCG00000031300 #22	SPATA6 (ENSSSCG00000003881) #23	SLC5A9 (ENSSSCG00000003882) #24	TRABD2B (ENSSSCG00000037318) #27	FOXD2 (ENSSSCG00000034880)	FOXE3 (ENSSSCG00000003884)	CMPK1 (ENSSSCG00000003885)	STIL (ENSSSCG00000003888) #28	TAL1 (ENSSSCG00000058056) #29	ENSSSCG00000020872 #30	ENSSSCG00000056639 #32	ENSSSCG00000031778 #31	ENSSSCG00000024129 #31	ENSSSCG00000003892 #32	CYP4A24 (ENSSSCG00000062158) #32	ENSSSCG00000062325 #32
Chacoan peccary	MODERN SPECIES	54	BTF3L4 (ENSCWAG00000003727) #8	TXNDC12 (ENSCWAG00000003757) #9	ENSCWAG00000003778	RAB3B (ENSCWAG00000003795) #10	NRDC (ENSCWAG00000003843) #11	OSBPL9 (ENSCWAG00000004180) #12	ENSCWAG00000004705	EPS15 (ENSCWAG00000004768) #13	TTC39A (ENSCWAG00000004869) #14	RNF11 (ENSCWAG00000005303) #15	C1orf185 (ENSCWAG00000005324) #16	CDKN2C (ENSCWAG00000005386) #17	FAF1 (ENSCWAG00000005411) #18	DMRTA2 (ENSCWAG00000005466) #19	ELAVL4 (ENSCWAG00000005560) #20	AGBL4 (ENSCWAG00000006528) #22	BEND5 (ENSCWAG00000006694) #21	SPATA6 (ENSCWAG00000006748) #23	SLC5A9 (ENSCWAG00000006856) #24	TRABD2B (ENSCWAG00000007013) #27	FOXD2 (ENSCWAG00000007046)	FOXE3 (ENSCWAG00000007053)	CMPK1 (ENSCWAG00000007073)	STIL (ENSCWAG00000007144) #28	TAL1 (ENSCWAG00000007586) #29	ENSCWAG00000007601 #30	ENSCWAG00000007625 #31	ENSCWAG00000007685 #31	ENSCWAG00000007782 #32	ENSCWAG00000007884 #32	ENSCWAG00000008145 #32
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Camelidae	ANCESTRAL SPECIES	11	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173 #32	ENSGT00940000160927 #31	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886
Arabian camel	MODERN SPECIES	4	CC2D1B (ENSCDRG00005006195)	ZFYVE9 (ENSCDRG00005006088) #7	BTF3L4 (ENSCDRG00005006016) #8	TXNDC12 (ENSCDRG00005005982) #9	RAB3B (ENSCDRG00005005964) #10	NRDC (ENSCDRG00005005602) #11	OSBPL9 (ENSCDRG00005005422) #12	EPS15 (ENSCDRG00005005246) #13	TTC39A (ENSCDRG00005004896) #14	C1orf185 (ENSCDRG00005004794) #16	CDKN2C (ENSCDRG00005004767) #17	FAF1 (ENSCDRG00005004702) #18	DMRTA2 (ENSCDRG00005004641) #19	ELAVL4 (ENSCDRG00005004051) #20	BEND5 (ENSCDRG00005003960) #21	AGBL4 (ENSCDRG00005003837) #22	SPATA6 (ENSCDRG00005003747) #23	ENSCDRG00005003726	SLC5A9 (ENSCDRG00005003621) #24	TRABD2B (ENSCDRG00005003535) #27	CMPK1 (ENSCDRG00005019485)	STIL (ENSCDRG00005019454) #28	TAL1 (ENSCDRG00005019418) #29	ENSCDRG00005019396 #30	ENSCDRG00005019371 #32	CYP4X1 (ENSCDRG00005019322) #31	EFCAB14 (ENSCDRG00005019273) #36	TEX38 (ENSCDRG00005019244) #37	ATPAF1 (ENSCDRG00005019231)	MOB3C (ENSCDRG00005019211)	MKNK1 (ENSCDRG00005019138)
Alpaca	MODERN SPECIES	2449														ELAVL4 (ENSVPAG00000011606) #20	BEND5 (ENSVPAG00000011605) #21	AGBL4 (ENSVPAG00000011604) #22
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32	ENSGT00940000161441.d #33
Pecora	ANCESTRAL SPECIES	2	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.b #32	ENSGT00940000155173.k.a.a.b.a #32
Yarkand deer	MODERN SPECIES	12	BTF3L4 (ENSCHYG00000011776) #8	TXNDC12 (ENSCHYG00000011889) #9	RAB3B (ENSCHYG00000011948) #10	NRDC (ENSCHYG00000012147) #11	ENSCHYG00000016488	ENSCHYG00000016631 #12	ENSCHYG00000018015	EPS15 (ENSCHYG00000018363) #13	TTC39A (ENSCHYG00000019043) #14	RNF11 (ENSCHYG00000020010) #15	C1orf185 (ENSCHYG00000020169) #16	CDKN2C (ENSCHYG00000020293) #17	FAF1 (ENSCHYG00000020360) #18	ENSCHYG00000020992	ELAVL4 (ENSCHYG00000021125) #20	AGBL4 (ENSCHYG00000021988) #22	ENSCHYG00000022139	BEND5 (ENSCHYG00000022182) #21	SPATA6 (ENSCHYG00000022292) #23	SLC5A9 (ENSCHYG00000022514) #24	ENSCHYG00000022669	ENSCHYG00000022715 #25	ENSCHYG00000022779 #26	TRABD2B (ENSCHYG00000022894) #27	ENSCHYG00000022932	FOXD2 (ENSCHYG00000022949)	CMPK1 (ENSCHYG00000022970)	STIL (ENSCHYG00000023044) #28	TAL1 (ENSCHYG00000023140) #29	PDZK1IP1 (ENSCHYG00000023171) #30	CYP4X1 (ENSCHYG00000023196) #31
Percora_a	ANCESTRAL SPECIES	1	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.b #32	ENSGT00940000155173.k.a.a.b.a #32
Siberian musk deer	MODERN SPECIES	340	TXNDC12 (ENSMMSG00000010552) #9	RAB3B (ENSMMSG00000010591) #10	NRDC (ENSMMSG00000010652) #11	OSBPL9 (ENSMMSG00000011045) #12	ENSMMSG00000011598	EPS15 (ENSMMSG00000011662) #13	TTC39A (ENSMMSG00000012294) #14	RNF11 (ENSMMSG00000012629) #15	C1orf185 (ENSMMSG00000012641) #16	ENSMMSG00000012725	CDKN2C (ENSMMSG00000012734) #17	FAF1 (ENSMMSG00000012758) #18	ENSMMSG00000012776	DMRTA2 (ENSMMSG00000012786) #19	ELAVL4 (ENSMMSG00000012846) #20	AGBL4 (ENSMMSG00000013891) #22	BEND5 (ENSMMSG00000013981) #21	SPATA6 (ENSMMSG00000014025) #23	SLC5A9 (ENSMMSG00000014113) #24	ENSMMSG00000014251 #25	ENSMMSG00000014278 #26	TRABD2B (ENSMMSG00000014286) #27	FOXD2 (ENSMMSG00000014302)	FOXE3 (ENSMMSG00000014313)	ENSMMSG00000014328	STIL (ENSMMSG00000014379) #28	TAL1 (ENSMMSG00000014528) #29	PDZK1IP1 (ENSMMSG00000014540) #30	CYP4X1 (ENSMMSG00000014557) #31	ENSMMSG00000014713 #32	ENSMMSG00000017845 #32
Bovidae	ANCESTRAL SPECIES	1	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.b #32	ENSGT00940000155173.k.a.a.b.a #32	ENSGT00940000155173.k.a.a.b.b #32
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.b #32	ENSGT00940000155173.k.a.a.b.a.d #32	ENSGT00940000155173.k.a.a.b.a.c #32	ENSGT00940000155173.k.a.a.b.b #32
Goat	MODERN SPECIES	22	TXNDC12 (ENSCHIG00000021386) #9	RAB3B (ENSCHIG00000018985) #10	ENSCHIG00000015938	NRDC (ENSCHIG00000018703) #11	ENSCHIG00000026722 #12	ENSCHIG00000011084	EPS15 (ENSCHIG00000014467) #13	TTC39A (ENSCHIG00000004432) #14	RNF11 (ENSCHIG00000015466) #15	C1orf185 (ENSCHIG00000024707) #16	CDKN2C (ENSCHIG00000018497) #17	FAF1 (ENSCHIG00000023469) #18	DMRTA2 (ENSCHIG00000014219) #19	ELAVL4 (ENSCHIG00000002038) #20	BEND5 (ENSCHIG00000021731) #21	ENSCHIG00000002488 #22	SPATA6 (ENSCHIG00000022098) #23	SLC5A9 (ENSCHIG00000008499) #24	ENSCHIG00000016345 #25	TRABD2B (ENSCHIG00000016346) #27	ENSCHIG00000008212	FOXD2 (ENSCHIG00000000964)	FOXE3 (ENSCHIG00000005171)	CMPK1 (ENSCHIG00000009857)	STIL (ENSCHIG00000018306) #28	TAL1 (ENSCHIG00000023704) #29	PDZK1IP1 (ENSCHIG00000010100) #30	CYP4X1 (ENSCHIG00000017002) #31	CYP4A42 (ENSCHIG00000025289) #32	ENSCHIG00000022081 #32	ENSCHIG00000002358
Bovinae	ANCESTRAL SPECIES	1	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.q #12	ENSGT00960000192687	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831.q.a #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000153095.g.b.b.d.b	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.a.a.b.a #32	ENSGT00940000155173.k.a.a.a #32	ENSGT00940000161441.d #33
American bison	MODERN SPECIES	2971											CDKN2C (ENSBBBG00000009704) #17	FAF1 (ENSBBBG00000009713) #18	ELAVL4 (ENSBBBG00000009727) #20	ENSBBBG00000001599	BEND5 (ENSBBBG00000009734) #21	AGBL4 (ENSBBBG00000009737) #22	SPATA6 (ENSBBBG00000009751) #23	SLC5A9 (ENSBBBG00000009762) #24	ENSBBBG00000009039 #25	ENSBBBG00000009765	ENSBBBG00000009768 #26	TRABD2B (ENSBBBG00000009775) #27	CMPK1 (ENSBBBG00000009782)	STIL (ENSBBBG00000001632) #28	ENSBBBG00000001633 #29	PDZK1IP1 (ENSBBBG00000009801) #30	ENSBBBG00000009802	CYP4X1 (ENSBBBG00000008137) #31	ENSBBBG00000007113 #32	ENSBBBG00000009830 #32	CYP4B1 (ENSBBBG00000009841) #33
Bos	ANCESTRAL SPECIES		ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.q #12	ENSGT00960000192687	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831.q.a #18	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000153095.g.b.b.d.b	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.a.a.b.a.b #32	ENSGT00940000155173.k.a.a.a #32
Bos_a	ANCESTRAL SPECIES	1	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.q #12	ENSGT00960000192687	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831.q.a #18	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00990000203553.c.a.a.a.b	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.a.a.b.a.b #32	ENSGT00940000155173.k.a.a.a #32
Wild yak	MODERN SPECIES	676	RAB3B (ENSBMUG00000016730) #10	NRDC (ENSBMUG00000016703) #11	ENSBMUG00000016543	ENSBMUG00000016376 #12	EPS15 (ENSBMUG00000016038) #13	TTC39A (ENSBMUG00000015807) #14	RNF11 (ENSBMUG00000015733) #15	C1orf185 (ENSBMUG00000015719) #16	CDKN2C (ENSBMUG00000015705) #17	FAF1 (ENSBMUG00000015674) #18	DMRTA2 (ENSBMUG00000015624) #19	ELAVL4 (ENSBMUG00000015604) #20	ENSBMUG00000015445	ENSBMUG00000015436	BEND5 (ENSBMUG00000015425) #21	AGBL4 (ENSBMUG00000015405) #22	ENSBMUG00000015342 #23	ENSBMUG00000015327 #23
Bos_b	ANCESTRAL SPECIES	1	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.a.b.b.a	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.q #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831.q.a #18	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000153095.g.b.b.d.b	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.k.a.a.b.a.b #32	ENSGT00940000155173.k.a.a.b.a.a #32
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005014899	RAB3B (ENSBIXG00005014889) #10	NRDC (ENSBIXG00005014778) #11	ENSBIXG00005014220	OSBPL9 (ENSBIXG00005014176) #12	EPS15 (ENSBIXG00005013837) #13	TTC39A (ENSBIXG00005013555) #14	RNF11 (ENSBIXG00005013258) #15	C1orf185 (ENSBIXG00005013246) #16	CDKN2C (ENSBIXG00005013218) #17	ENSBIXG00005013185 #18	ENSBIXG00005013142	DMRTA2 (ENSBIXG00005013129) #19	ENSBIXG00005013121	ELAVL4 (ENSBIXG00005013087) #20	AGBL4 (ENSBIXG00005012945) #22	ENSBIXG00005001430	BEND5 (ENSBIXG00005012833) #21	SPATA6 (ENSBIXG00005012777) #23	ENSBIXG00005012739	SLC5A9 (ENSBIXG00005012722) #24	ENSBIXG00005012658 #25	TRABD2B (ENSBIXG00005012610) #27	FOXE3 (ENSBIXG00005012567)	CMPK1 (ENSBIXG00005012554)	STIL (ENSBIXG00005001365) #28	TAL1 (ENSBIXG00005001347) #29	PDZK1IP1 (ENSBIXG00005012472) #30	CYP4X1 (ENSBIXG00005012436) #31	ENSBIXG00005012345 #32	CYP4B1 (ENSBIXG00005001270) #33
Cow	DUPLICATION
Cow	MODERN SPECIES	22	RAB3B (ENSBTAG00000005337) #10	NRDC (ENSBTAG00000021174) #11	OSBPL9 (ENSBTAG00000021170) #12	EPS15 (ENSBTAG00000005542) #13	ENSBTAG00000048722	TTC39A (ENSBTAG00000002451) #14	RNF11 (ENSBTAG00000054545) #15	C3H1orf185 (ENSBTAG00000009674) #16	CDKN2C (ENSBTAG00000011059) #17	FAF1 (ENSBTAG00000014482) #18	DMRTA2 (ENSBTAG00000010414) #19	ELAVL4 (ENSBTAG00000021046) #20	ENSBTAG00000054981 #22	ENSBTAG00000053607	BEND5 (ENSBTAG00000009209) #21	ENSBTAG00000012722 #22	SPATA6 (ENSBTAG00000003128) #23	SLC5A9 (ENSBTAG00000014225) #24	ENSBTAG00000054583	SKINT1 (ENSBTAG00000009192) #25	TRABD2B (ENSBTAG00000054324) #27	FOXD2 (ENSBTAG00000045643)	FOXE3 (ENSBTAG00000051575)	CMPK1 (ENSBTAG00000019956)	STIL (ENSBTAG00000017844) #28	TAL1 (ENSBTAG00000005029) #29	PDZK1IP1 (ENSBTAG00000002555) #30	CYP4X1 (ENSBTAG00000015647) #31	CYP4A11 (ENSBTAG00000037890) #32	CYP4A59 (ENSBTAG00000000229) #32	CYP4A22 (ENSBTAG00000013481) #32
Cow	MODERN SPECIES	22	TXNDC12 (ENSBTAG00000011024) #9	ENSBTAG00000052338	ENSBTAG00000049239	RAB3B (ENSBTAG00000005337) #10	NRDC (ENSBTAG00000021174) #11	OSBPL9 (ENSBTAG00000021170) #12	EPS15 (ENSBTAG00000005542) #13	ENSBTAG00000048722	TTC39A (ENSBTAG00000002451) #14	RNF11 (ENSBTAG00000054545) #15	C3H1orf185 (ENSBTAG00000009674) #16	CDKN2C (ENSBTAG00000011059) #17	FAF1 (ENSBTAG00000014482) #18	DMRTA2 (ENSBTAG00000010414) #19	ELAVL4 (ENSBTAG00000021046) #20	ENSBTAG00000054981 #22	ENSBTAG00000053607	BEND5 (ENSBTAG00000009209) #21	ENSBTAG00000012722 #22	SPATA6 (ENSBTAG00000003128) #23	SLC5A9 (ENSBTAG00000014225) #24	ENSBTAG00000054583	SKINT1 (ENSBTAG00000009192) #25	TRABD2B (ENSBTAG00000054324) #27	FOXD2 (ENSBTAG00000045643)	FOXE3 (ENSBTAG00000051575)	CMPK1 (ENSBTAG00000019956)	STIL (ENSBTAG00000017844) #28	TAL1 (ENSBTAG00000005029) #29	PDZK1IP1 (ENSBTAG00000002555) #30	CYP4X1 (ENSBTAG00000015647) #31
Cetacea	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173.j #32	ENSGT00940000160927 #31	ENSGT00940000155173.i.a #32	ENSGT00950000182958.a.b.b.j.l	ENSGT00390000011196 #36	ENSGT00390000016446 #37
Blue whale	MODERN SPECIES		ENSBMSG00010006017	TXNDC12 (ENSBMSG00010006006) #9	RAB3B (ENSBMSG00010005996) #10	NRDC (ENSBMSG00010005952) #11	ENSBMSG00010005842 #12	EPS15 (ENSBMSG00010005767) #13	TTC39A (ENSBMSG00010005702) #14	RNF11 (ENSBMSG00010005680) #15	C1orf185 (ENSBMSG00010005668) #16	CDKN2C (ENSBMSG00010005658) #17	FAF1 (ENSBMSG00010005636) #18	DMRTA2 (ENSBMSG00010005622) #19	ELAVL4 (ENSBMSG00010005482) #20	ENSBMSG00010005423	BEND5 (ENSBMSG00010005413) #21	AGBL4 (ENSBMSG00010005358) #22	SPATA6 (ENSBMSG00010005335) #23	SLC5A9 (ENSBMSG00010005258) #24	TRABD2B (ENSBMSG00010005224) #27	ENSBMSG00010005215	FOXE3 (ENSBMSG00010005194)	CMPK1 (ENSBMSG00010005177)	STIL (ENSBMSG00010005150) #28	TAL1 (ENSBMSG00010005132) #29	PDZK1IP1 (ENSBMSG00010005121) #30	ENSBMSG00010005054 #32	ENSBMSG00010005028 #33	ENSBMSG00010005002 #32	ENSBMSG00010004944 #33	ENSBMSG00010004923	ENSBMSG00010004918
Odontoceti	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000155339.r	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173.i.a #32	ENSGT00940000160927 #31	ENSGT00940000155173.j #32	ENSGT00950000182958.a.b.b.j.l	ENSGT00390000011196 #36
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	15	RAB3B (ENSPCTG00005010036) #10	NRDC (ENSPCTG00005010107) #11	OSBPL9 (ENSPCTG00005010621) #12	ENSPCTG00005011404	EPS15 (ENSPCTG00005011544) #13	TTC39A (ENSPCTG00005011838) #14	RNF11 (ENSPCTG00005012191) #15	ENSPCTG00005012230	CDKN2C (ENSPCTG00005012278) #17	FAF1 (ENSPCTG00005012310) #18	ENSPCTG00005012390 #22	ELAVL4 (ENSPCTG00005012489) #20	ENSPCTG00005013384	ENSPCTG00005013401	BEND5 (ENSPCTG00005013421) #21	AGBL4 (ENSPCTG00005013528) #22	SPATA6 (ENSPCTG00005013649) #23	SLC5A9 (ENSPCTG00005013780) #24	ENSPCTG00005014378	ENSPCTG00005014432	FOXE3 (ENSPCTG00005014461)	CMPK1 (ENSPCTG00005014484)	STIL (ENSPCTG00005014632) #28	TAL1 (ENSPCTG00005014754) #29	PDZK1IP1 (ENSPCTG00005014810) #30	ENSPCTG00005014892 #32	ENSPCTG00005015607 #32	CYP4B1 (ENSPCTG00005016063) #33	ENSPCTG00005016599	ENSPCTG00005016621	EFCAB14 (ENSPCTG00005016666) #36
Sperm whale	MODERN SPECIES	15	ENSPCTG00005014892 #32	PDZK1IP1 (ENSPCTG00005014810) #30	TAL1 (ENSPCTG00005014754) #29	STIL (ENSPCTG00005014632) #28	CMPK1 (ENSPCTG00005014484)	FOXE3 (ENSPCTG00005014461)	ENSPCTG00005014432	ENSPCTG00005014378	SLC5A9 (ENSPCTG00005013780) #24	SPATA6 (ENSPCTG00005013649) #23	AGBL4 (ENSPCTG00005013528) #22	BEND5 (ENSPCTG00005013421) #21	ENSPCTG00005013401	ENSPCTG00005013384	ELAVL4 (ENSPCTG00005012489) #20	ENSPCTG00005012390 #22	FAF1 (ENSPCTG00005012310) #18	CDKN2C (ENSPCTG00005012278) #17	ENSPCTG00005012230	RNF11 (ENSPCTG00005012191) #15	TTC39A (ENSPCTG00005011838) #14	EPS15 (ENSPCTG00005011544) #13	ENSPCTG00005011404	OSBPL9 (ENSPCTG00005010621) #12	NRDC (ENSPCTG00005010107) #11	RAB3B (ENSPCTG00005010036) #10	ENSPCTG00005010014	TXNDC12 (ENSPCTG00005009903) #9	BTF3L4 (ENSPCTG00005009786) #8	ENSPCTG00005009447	ORC1 (ENSPCTG00005009282)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000155339.r	ENSGT00940000161273 #27	ENSGT00940000153412.A.a.c.e.b	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173.i.a #32	ENSGT00940000160927 #31	ENSGT00940000155173.j.a #32	ENSGT00390000011196 #36
Dolphin	MODERN SPECIES	2874														ELAVL4 (ENSTTRG00000012441) #20	BEND5 (ENSTTRG00000012397) #21	AGBL4 (ENSTTRG00000012384) #22	SPATA6 (ENSTTRG00000012366) #23	SLC5A9 (ENSTTRG00000012358) #24	ENSTTRG00000012352 #25
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000155339.r	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173.i.a #32	ENSGT00940000163504	ENSGT00940000161441.c.b.a ##33	ENSGT00940000155173.i.b #32	ENSGT00390000011196 #36
Vaquita	MODERN SPECIES		RAB3B (ENSPSNG00000012890) #10	ENSPSNG00000012757	NRDC (ENSPSNG00000012358) #11	ENSPSNG00000011761 #12	EPS15 (ENSPSNG00000011562) #13	TTC39A (ENSPSNG00000010892) #14	RNF11 (ENSPSNG00000010799) #15	C1orf185 (ENSPSNG00000010619) #16	ENSPSNG00000010600	CDKN2C (ENSPSNG00000010560) #17	FAF1 (ENSPSNG00000010473) #18	DMRTA2 (ENSPSNG00000010437) #19	ELAVL4 (ENSPSNG00000009710) #20	ENSPSNG00000009540	BEND5 (ENSPSNG00000009518) #21	AGBL4 (ENSPSNG00000009355) #22	SPATA6 (ENSPSNG00000009229) #23	SLC5A9 (ENSPSNG00000009041) #24	ENSPSNG00000008987	ENSPSNG00000008955	TRABD2B (ENSPSNG00000008890) #27	FOXD2 (ENSPSNG00000008853)	FOXE3 (ENSPSNG00000008840)	CMPK1 (ENSPSNG00000008760)	STIL (ENSPSNG00000008673) #28	TAL1 (ENSPSNG00000008617) #29	PDZK1IP1 (ENSPSNG00000008584) #30	ENSPSNG00000008499 #32	ENSPSNG00000008408 #32	ENSPSNG00000008156 #32	ENSPSNG00000007825 #32
Monodontidae	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000155339.r	ENSGT00940000161273 #27	ENSGT00940000153412.A.a.c.e.b	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504	ENSGT00940000161441.c.b.a ##33	ENSGT00940000155173.i.b #32	ENSGT00390000011196 #36
Narwhal	MODERN SPECIES	304	TXNDC12 (ENSMMNG00015015235) #9	ENSMMNG00015015254	RAB3B (ENSMMNG00015015267) #10	ENSMMNG00015015285	NRDC (ENSMMNG00015015338) #11	OSBPL9 (ENSMMNG00015015491) #12	ENSMMNG00015015722	EPS15 (ENSMMNG00015015790) #13	TTC39A (ENSMMNG00015015942) #14	RNF11 (ENSMMNG00015016177) #15	ENSMMNG00015016200	CDKN2C (ENSMMNG00015016226) #17	FAF1 (ENSMMNG00015016261) #18	DMRTA2 (ENSMMNG00015016305) #19	ELAVL4 (ENSMMNG00015016468) #20	AGBL4 (ENSMMNG00015016854) #22	ENSMMNG00015017042	BEND5 (ENSMMNG00015017067) #21	SPATA6 (ENSMMNG00015017114) #23	SLC5A9 (ENSMMNG00015017189) #24	ENSMMNG00015017223	TRABD2B (ENSMMNG00015017248) #27	ENSMMNG00015017274	FOXD2 (ENSMMNG00015017290)	FOXE3 (ENSMMNG00015017301)	CMPK1 (ENSMMNG00015017341)	STIL (ENSMMNG00015017497) #28	TAL1 (ENSMMNG00015017573) #29	PDZK1IP1 (ENSMMNG00015017600) #30	ENSMMNG00015017646	ENSMMNG00015017692 ##33
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	74	ENSDLEG00000018017	NRDC (ENSDLEG00000017921) #11	OSBPL9 (ENSDLEG00000016465) #12	ENSDLEG00000016334	EPS15 (ENSDLEG00000016250) #13	TTC39A (ENSDLEG00000016187) #14	RNF11 (ENSDLEG00000016174) #15	C1orf185 (ENSDLEG00000016132) #16	CDKN2C (ENSDLEG00000016125) #17	FAF1 (ENSDLEG00000016028) #18	DMRTA2 (ENSDLEG00000016008) #19	ELAVL4 (ENSDLEG00000015258) #20	ENSDLEG00000015238 #22	ENSDLEG00000015227	BEND5 (ENSDLEG00000015199) #21	AGBL4 (ENSDLEG00000015168) #22	SPATA6 (ENSDLEG00000015119) #23	SLC5A9 (ENSDLEG00000015091) #24	ENSDLEG00000015073	ENSDLEG00000015069	TRABD2B (ENSDLEG00000015057) #27	ENSDLEG00000015052	FOXD2 (ENSDLEG00000015047)	FOXE3 (ENSDLEG00000015041)	CMPK1 (ENSDLEG00000014989)	STIL (ENSDLEG00000014810) #28	TAL1 (ENSDLEG00000014787) #29	PDZK1IP1 (ENSDLEG00000014775) #30	ENSDLEG00000014649 #33	ENSDLEG00000014626 ##33	EFCAB14 (ENSDLEG00000014585) #36
Beluga whale	MODERN SPECIES	74	ENSDLEG00000018063	TXNDC12 (ENSDLEG00000018054) #9	RAB3B (ENSDLEG00000018039) #10	ENSDLEG00000018017	NRDC (ENSDLEG00000017921) #11	OSBPL9 (ENSDLEG00000016465) #12	ENSDLEG00000016334	EPS15 (ENSDLEG00000016250) #13	TTC39A (ENSDLEG00000016187) #14	RNF11 (ENSDLEG00000016174) #15	C1orf185 (ENSDLEG00000016132) #16	CDKN2C (ENSDLEG00000016125) #17	FAF1 (ENSDLEG00000016028) #18	DMRTA2 (ENSDLEG00000016008) #19	ELAVL4 (ENSDLEG00000015258) #20	ENSDLEG00000015238 #22	ENSDLEG00000015227	BEND5 (ENSDLEG00000015199) #21	AGBL4 (ENSDLEG00000015168) #22	SPATA6 (ENSDLEG00000015119) #23	SLC5A9 (ENSDLEG00000015091) #24	ENSDLEG00000015073	ENSDLEG00000015069	TRABD2B (ENSDLEG00000015057) #27	ENSDLEG00000015052	FOXD2 (ENSDLEG00000015047)	FOXE3 (ENSDLEG00000015041)	CMPK1 (ENSDLEG00000014989)	STIL (ENSDLEG00000014810) #28	TAL1 (ENSDLEG00000014787) #29	PDZK1IP1 (ENSDLEG00000014775) #30
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155042.b #22
Common shrew	MODERN SPECIES	6103																AGBL4 (ENSSARG00000001128) #22
Hedgehog	MODERN SPECIES	7761																AGBL4 (ENSEEUG00000010479) #22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Tree shrew	MODERN SPECIES	1418															ELAVL4 (ENSTBEG00000011730) #20	AGBL4 (ENSTBEG00000011525) #22	SPATA6 (ENSTBEG00000011254) #23
Glires	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.a.b ##22	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00980000201734	ENSGT00940000160927 #31	ENSGT00940000155173 #32	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Rabbit	MODERN SPECIES	4	C1orf185 (ENSOCUG00000027363) #16	ENSOCUG00000038347	CDKN2C (ENSOCUG00000008385) #17	FAF1 (ENSOCUG00000031945) #18	DMRTA2 (ENSOCUG00000001019) #19	ELAVL4 (ENSOCUG00000016262) #20	ENSOCUG00000037999	ENSOCUG00000030354	ENSOCUG00000029778	ENSOCUG00000031084	ENSOCUG00000035051	ENSOCUG00000023561	ENSOCUG00000011146	ENSOCUG00000033406 ##22	BEND5 (ENSOCUG00000006471) #21	ENSOCUG00000006460 #22	SPATA6 (ENSOCUG00000008704) #23	ENSOCUG00000021113	SLC5A9 (ENSOCUG00000007119) #24	ENSOCUG00000031714	TRABD2B (ENSOCUG00000035774) #27	CMPK1 (ENSOCUG00000012424)	STIL (ENSOCUG00000013586) #28	TAL1 (ENSOCUG00000017248) #29	ENSOCUG00000038723	ENSOCUG00000030697	CYP4X1 (ENSOCUG00000008267) #31	ENSOCUG00000034966	ENSOCUG00000034574	CYP4A5 (ENSOCUG00000025702) #32	CYP4B1 (ENSOCUG00000011201) #33
Pika	MODERN SPECIES	4127															ENSOPRG00000012392 #21	ENSOPRG00000012378 #22
Rodentia	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.f.a #32
Rodentia_A	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.mb.b #12	ENSGT00940000154690.nb #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.f.a #32
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.mb.b #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988.f #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A.d #25	ENSGT00940000162562.A.c #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31
Marmotini	ANCESTRAL SPECIES		ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.mb.b #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988.f #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.e.a	ENSGT00940000162562.A.d #25	ENSGT00940000164707.e.b	ENSGT00940000162562.A.c #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.mb.b #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751.m #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988.f #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.e.a	ENSGT00940000162562.A.d #25	ENSGT00940000162562.A.c #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31
Arctic ground squirrel	MODERN SPECIES	21	ENSUPAG00010021795	BTF3L4 (ENSUPAG00010021796) #8	TXNDC12 (ENSUPAG00010021798) #9	RAB3B (ENSUPAG00010021800) #10	NRDC (ENSUPAG00010021802) #11	ENSUPAG00010021819 #12	ENSUPAG00010022352	EPS15 (ENSUPAG00010022360) #13	TTC39A (ENSUPAG00010022367) #14	RNF11 (ENSUPAG00010022375) #15	C1orf185 (ENSUPAG00010022379) #16	CDKN2C (ENSUPAG00010022383) #17	FAF1 (ENSUPAG00010022385) #18	DMRTA2 (ENSUPAG00010022391) #19	ELAVL4 (ENSUPAG00010022399) #20	AGBL4 (ENSUPAG00010022463) #22	ENSUPAG00010022464	ENSUPAG00010022466	BEND5 (ENSUPAG00010022467) #21	ENSUPAG00010022468 #23
Squirrel	MODERN SPECIES	74															BEND5 (ENSSTOG00000006997) #21	AGBL4 (ENSSTOG00000006972) #22	SPATA6 (ENSSTOG00000006944) #23	SLC5A9 (ENSSTOG00000006889) #24	ENSSTOG00000023325 #25	ENSSTOG00000024899 #25	ENSSTOG00000023168	TRABD2B (ENSSTOG00000028454) #27	FOXD2 (ENSSTOG00000027420)	FOXE3 (ENSSTOG00000033171)	CMPK1 (ENSSTOG00000007706)	STIL (ENSSTOG00000014333) #28	TAL1 (ENSSTOG00000008396) #29	PDZK1IP1 (ENSSTOG00000024038) #30	CYP4X1 (ENSSTOG00000013556) #31	ENSSTOG00000015913 #32	ENSSTOG00000028206 #32
Alpin marmot	MODERN SPECIES	15	TXNDC12 (ENSMMMG00000016554) #9	RAB3B (ENSMMMG00000016565) #10	NRDC (ENSMMMG00000016570) #11	ENSMMMG00000016694 #12	ENSMMMG00000017393	ENSMMMG00000017404	EPS15 (ENSMMMG00000017432) #13	TTC39A (ENSMMMG00000017526) #14	RNF11 (ENSMMMG00000017539) #15	C1orf185 (ENSMMMG00000017543) #16	ENSMMMG00000017564	CDKN2C (ENSMMMG00000017571) #17	FAF1 (ENSMMMG00000017599) #18	ENSMMMG00000017613	ELAVL4 (ENSMMMG00000017637) #20	AGBL4 (ENSMMMG00000017802) #22	BEND5 (ENSMMMG00000017823) #21	ENSMMMG00000017834 #23	SLC5A9 (ENSMMMG00000017850) #24	ENSMMMG00000017885	ENSMMMG00000017897 #25	ENSMMMG00000017906	ENSMMMG00000017918 #25	ENSMMMG00000017939 #26	TRABD2B (ENSMMMG00000017951) #27	FOXD2 (ENSMMMG00000017982)	CMPK1 (ENSMMMG00000017986)	STIL (ENSMMMG00000018013) #28	ENSMMMG00000018085 #29	PDZK1IP1 (ENSMMMG00000018092) #30	CYP4X1 (ENSMMMG00000018100) #31
Eurasian red squirrel	MODERN SPECIES		NRDC (ENSSVLG00005017058) #11	ENSSVLG00005016989	OSBPL9 (ENSSVLG00005016219) #12	ENSSVLG00005016060	ENSSVLG00005016035	EPS15 (ENSSVLG00005015885) #13	TTC39A (ENSSVLG00005015332) #14	ENSSVLG00005015243 #15	ENSSVLG00005015219	C1orf185 (ENSSVLG00005015015) #16	CDKN2C (ENSSVLG00005014944) #17	FAF1 (ENSSVLG00005014843) #18	DMRTA2 (ENSSVLG00005014792) #19	ELAVL4 (ENSSVLG00005014154) #20	BEND5 (ENSSVLG00005013425) #21	AGBL4 (ENSSVLG00005013331) #22	SPATA6 (ENSSVLG00005013178) #23	SLC5A9 (ENSSVLG00005012665) #24	ENSSVLG00005012469	ENSSVLG00005012369 #25	ENSSVLG00005012317 #26	TRABD2B (ENSSVLG00005012216) #27	FOXD2 (ENSSVLG00005012190)	FOXE3 (ENSSVLG00005012158)	ENSSVLG00005012034	STIL (ENSSVLG00005011246) #28	TAL1 (ENSSVLG00005011145) #29	PDZK1IP1 (ENSSVLG00005011099) #30	CYP4X1 (ENSSVLG00005010957) #31	ENSSVLG00005010122 #32	ENSSVLG00005009845 #32
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.nb #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.f.a #32	ENSGT00940000163570.a	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.nb #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.f.a #32	ENSGT00940000163570.a	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37
Hystricomorpha_b	ANCESTRAL SPECIES	54	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.nb #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000163540	ENSGT00940000160589.k	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000163570.a	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765
Long-tailed chinchilla	MODERN SPECIES	171	TXNDC12 (ENSCLAG00000004403) #9	ENSCLAG00000004470	RAB3B (ENSCLAG00000004516) #10	NRDC (ENSCLAG00000004925) #11	OSBPL9 (ENSCLAG00000006250) #12	ENSCLAG00000009812	ENSCLAG00000004460	EPS15 (ENSCLAG00000005042) #13	TTC39A (ENSCLAG00000005328) #14	ENSCLAG00000006939	C1orf185 (ENSCLAG00000007634) #16	CDKN2C (ENSCLAG00000007763) #17	FAF1 (ENSCLAG00000008153) #18	DMRTA2 (ENSCLAG00000008314) #19	ELAVL4 (ENSCLAG00000005476) #20	AGBL4 (ENSCLAG00000006735) #22	BEND5 (ENSCLAG00000007168) #21	SPATA6 (ENSCLAG00000007504) #23	SLC5A9 (ENSCLAG00000007839) #24	TRABD2B (ENSCLAG00000005900) #27	ENSCLAG00000005985	STIL (ENSCLAG00000006217) #28	TAL1 (ENSCLAG00000006842) #29	PDZK1IP1 (ENSCLAG00000007015) #30	CYP4B1 (ENSCLAG00000007349) #33	ENSCLAG00000004484 #32	ENSCLAG00000005036	ENSCLAG00000005609	EFCAB14 (ENSCLAG00000005792) #36	TEX38 (ENSCLAG00000006425) #37	ATPAF1 (ENSCLAG00000006456)
Degu	MODERN SPECIES	148	RAB3B (ENSODEG00000008282) #10	NRDC (ENSODEG00000007264) #11	OSBPL9 (ENSODEG00000005945) #12	ENSODEG00000007342	EPS15 (ENSODEG00000006324) #13	TTC39A (ENSODEG00000006441) #14	ENSODEG00000009489 #15	ENSODEG00000009865	ENSODEG00000006863	ENSODEG00000007244	CDKN2C (ENSODEG00000010220) #17	FAF1 (ENSODEG00000010743) #18	DMRTA2 (ENSODEG00000006537) #19	ELAVL4 (ENSODEG00000006770) #20	ENSODEG00000007109	AGBL4 (ENSODEG00000009564) #22	ENSODEG00000019354	ENSODEG00000006988	BEND5 (ENSODEG00000007742) #21	SPATA6 (ENSODEG00000006382) #23	SLC5A9 (ENSODEG00000007740) #24	TRABD2B (ENSODEG00000007567) #27	ENSODEG00000008585	ENSODEG00000019646	ENSODEG00000006760	ENSODEG00000007423	STIL (ENSODEG00000007478) #28	TAL1 (ENSODEG00000006602) #29	PDZK1IP1 (ENSODEG00000008906) #30	CYP4X1 (ENSODEG00000007165) #31	ENSODEG00000006889
Guinea pig	MODERN SPECIES	112	BTF3L4 (ENSCPOG00000036248) #8	ENSCPOG00000031935	TXNDC12 (ENSCPOG00000038607) #9	RAB3B (ENSCPOG00000007714) #10	NRDC (ENSCPOG00000010677) #11	OSBPL9 (ENSCPOG00000010663) #12	ENSCPOG00000023884	EPS15 (ENSCPOG00000009273) #13	TTC39A (ENSCPOG00000008138) #14	RNF11 (ENSCPOG00000031987) #15	CDKN2C (ENSCPOG00000031293) #17	FAF1 (ENSCPOG00000001151) #18	ENSCPOG00000030212	ENSCPOG00000002044 #20	BEND5 (ENSCPOG00000013879) #21	AGBL4 (ENSCPOG00000013872) #22	ENSCPOG00000013870 #23
Naked mole-rat female	MODERN SPECIES	10	ENSHGLG00000001774	ENSHGLG00000043012	ENSHGLG00000001708	ENSHGLG00000037669	ENSHGLG00000001660	ENSHGLG00000000829	OLFM3 (ENSHGLG00000036982)	S1PR1 (ENSHGLG00000035961)	ENSHGLG00000037805	DPH5 (ENSHGLG00000001639)	SLC30A7 (ENSHGLG00000001503)	EXTL2 (ENSHGLG00000047823)	ENSHGLG00000001392	ENSHGLG00000041802	ENSHGLG00000032170	ENSHGLG00000041024 #22	ENSHGLG00000001141	ENSHGLG00000001250	ENSHGLG00000001402	PLPPR4 (ENSHGLG00000001471)	ENSHGLG00000046587	PALMD (ENSHGLG00000043255)	FRRS1 (ENSHGLG00000038575)	ENSHGLG00000043942	AGL (ENSHGLG00000001869)	SLC35A3 (ENSHGLG00000001999)	ENSHGLG00000032669	MFSD14A (ENSHGLG00000002043)	SASS6 (ENSHGLG00000002021)	TRMT13 (ENSHGLG00000002164)	LRRC39 (ENSHGLG00000002276)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.f.b.a #32
Kangaroo rat	MODERN SPECIES	352						ENSDORG00000002718	Cryz (ENSDORG00000002723)	ENSDORG00000010715	Tnni3k (ENSDORG00000010710)	Fpgt (ENSDORG00000028813)	ENSDORG00000023988	Faf1 (ENSDORG00000015487) #18	Dmrta2 (ENSDORG00000015486) #19	Elavl4 (ENSDORG00000012729) #20	Bend5 (ENSDORG00000005815) #21	Agbl4 (ENSDORG00000012728) #22	Spata6 (ENSDORG00000010310) #23	Slc5a9 (ENSDORG00000010547) #24	Trabd2b (ENSDORG00000023562) #27	Foxd2 (ENSDORG00000028126)	Cmpk1 (ENSDORG00000004576)	Stil (ENSDORG00000004571) #28	Tal1 (ENSDORG00000028266) #29	Pdzk1ip1 (ENSDORG00000004566) #30	Cyp4x1 (ENSDORG00000015306) #31	ENSDORG00000027207 #32	ENSDORG00000008850 #32	ENSDORG00000028283	ENSDORG00000024423 #32	ENSDORG00000002019	Cyp4b1 (ENSDORG00000002018) #33
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.f.b.a #32
Muroidea	ANCESTRAL SPECIES	3	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173.f.b.a #32
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	780									Cdkn2c (ENSNGAG00000001881) #17	ENSNGAG00000023426	Faf1 (ENSNGAG00000015466) #18	Dmrta2 (ENSNGAG00000010314) #19	Elavl4 (ENSNGAG00000023123) #20	ENSNGAG00000020205 #22	Bend5 (ENSNGAG00000016052) #21	ENSNGAG00000011566 #22	ENSNGAG00000006899 #23
Upper Galilee mountains blind mole rat	MODERN SPECIES	780											Cdkn2c (ENSNGAG00000001881) #17	ENSNGAG00000023426	Faf1 (ENSNGAG00000015466) #18	Dmrta2 (ENSNGAG00000010314) #19	Elavl4 (ENSNGAG00000023123) #20	ENSNGAG00000020205 #22	Bend5 (ENSNGAG00000016052) #21	ENSNGAG00000011566 #22	ENSNGAG00000006899 #23
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00900000142372	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000163570.e.b
Golden Hamster	MODERN SPECIES	648	Txndc12 (ENSMAUG00000008444) #9	Rab3b (ENSMAUG00000012473) #10	ENSMAUG00000010138	Nrd1 (ENSMAUG00000012215) #11	Osbpl9 (ENSMAUG00000011321) #12	Calr4 (ENSMAUG00000016786)	Eps15 (ENSMAUG00000021661) #13	Ttc39a (ENSMAUG00000013412) #14	Rnf11 (ENSMAUG00000014680) #15	4930522H14Rik (ENSMAUG00000018143) #16	Cdkn2c (ENSMAUG00000019466) #17	Faf1 (ENSMAUG00000011844) #18	Dmrta2 (ENSMAUG00000012169) #19	Elavl4 (ENSMAUG00000021566) #20	Bend5 (ENSMAUG00000007838) #21	Agbl4 (ENSMAUG00000020446) #22	ENSMAUG00000021230 #23	ENSMAUG00000008507 #23	Slc5a9 (ENSMAUG00000016902) #24	ENSMAUG00000020229	ENSMAUG00000008748 #25	ENSMAUG00000004245 #25	ENSMAUG00000013879 #26	Trabd2b (ENSMAUG00000006510) #27	ENSMAUG00000009858	Foxd2 (ENSMAUG00000010964)	Foxe3 (ENSMAUG00000010093)	ENSMAUG00000019205	Stil (ENSMAUG00000018720) #28	Tal1 (ENSMAUG00000001565) #29	Pdzk1ip1 (ENSMAUG00000019882) #30
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001021460 #8	Txndc12 (ENSCGRG00001019312) #9	Rab3b (ENSCGRG00001013853) #10	Nrd1 (ENSCGRG00001022296) #11	Osbpl9 (ENSCGRG00001021068) #12	Calr4 (ENSCGRG00001011514)	Eps15 (ENSCGRG00001009890) #13	Ttc39a (ENSCGRG00001020495) #14	Rnf11 (ENSCGRG00001018595) #15	4930522H14Rik (ENSCGRG00001016306) #16	Cdkn2c (ENSCGRG00001013915) #17	Faf1 (ENSCGRG00001012451) #18	Dmrta2 (ENSCGRG00001010624) #19	Elavl4 (ENSCGRG00001020348) #20	Bend5 (ENSCGRG00001018629) #21	Agbl4 (ENSCGRG00001017075) #22	Spata6 (ENSCGRG00001001168) #23	Slc5a9 (ENSCGRG00001019511) #24	ENSCGRG00001023213	ENSCGRG00001021660 #25	ENSCGRG00001021187 #25	ENSCGRG00001018354 #26	Trabd2b (ENSCGRG00001016130) #27	ENSCGRG00001022727	Foxd2 (ENSCGRG00001010484)	Foxe3 (ENSCGRG00001005301)	Cmpk1 (ENSCGRG00001016283)	Stil (ENSCGRG00001012804) #28	Tal1 (ENSCGRG00001023671) #29	Pdzk1ip1 (ENSCGRG00001022750) #30	Cyp4x1 (ENSCGRG00001021846) #31
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00530000063273.a #9	ENSGT00900000142372	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b #25	ENSGT00940000165990	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000029069	Rab3b (ENSPEMG00000009732) #10	Nrd1 (ENSPEMG00000021266) #11	Osbpl9 (ENSPEMG00000023026) #12	Calr4 (ENSPEMG00000015759)	Eps15 (ENSPEMG00000017501) #13	ENSPEMG00000029734	Ttc39a (ENSPEMG00000021737) #14	Rnf11 (ENSPEMG00000028550) #15	4930522H14Rik (ENSPEMG00000020496) #16	ENSPEMG00000030255	Cdkn2c (ENSPEMG00000029349) #17	Faf1 (ENSPEMG00000022043) #18	Dmrta2 (ENSPEMG00000028558) #19	Elavl4 (ENSPEMG00000021058) #20	Agbl4 (ENSPEMG00000023297) #22	Bend5 (ENSPEMG00000022292) #21	Spata6 (ENSPEMG00000022120) #23	Slc5a9 (ENSPEMG00000021770) #24	ENSPEMG00000021177	Skint1 (ENSPEMG00000011155) #25	ENSPEMG00000021558 #25	ENSPEMG00000030740 #25	ENSPEMG00000026129	ENSPEMG00000023162 #25	ENSPEMG00000008143	Trabd2b (ENSPEMG00000021574) #27	Foxe3 (ENSPEMG00000025577)	Cmpk1 (ENSPEMG00000021852)	Stil (ENSPEMG00000023881) #28	Tal1 (ENSPEMG00000024420) #29
Prairie vole	MODERN SPECIES	1	Txndc12 (ENSMOCG00000007402) #9	ENSMOCG00000008572	Rab3b (ENSMOCG00000013133) #10	Nrd1 (ENSMOCG00000008359) #11	Osbpl9 (ENSMOCG00000017056) #12	ENSMOCG00000017309	Calr4 (ENSMOCG00000002656)	Eps15 (ENSMOCG00000004099) #13	Ttc39a (ENSMOCG00000009418) #14	Rnf11 (ENSMOCG00000014218) #15	4930522H14Rik (ENSMOCG00000014783) #16	Cdkn2c (ENSMOCG00000008425) #17	Faf1 (ENSMOCG00000016469) #18	Dmrta2 (ENSMOCG00000018451) #19	Elavl4 (ENSMOCG00000010309) #20	Agbl4 (ENSMOCG00000016733) #22	Bend5 (ENSMOCG00000003340) #21	ENSMOCG00000021709 #23	Slc5a9 (ENSMOCG00000022328) #24	ENSMOCG00000019561	ENSMOCG00000003588 #25	ENSMOCG00000013586 #25	ENSMOCG00000012467	Trabd2b (ENSMOCG00000002510) #27	Foxd2 (ENSMOCG00000002875)	Foxe3 (ENSMOCG00000008738)	Cmpk1 (ENSMOCG00000019310)	Stil (ENSMOCG00000001995) #28	Tal1 (ENSMOCG00000015608) #29	Pdzk1ip1 (ENSMOCG00000021926) #30	Cyp4x1 (ENSMOCG00000021415) #31
Murinae	ANCESTRAL SPECIES	2	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b #25	ENSGT00940000165990.a	ENSGT00940000165990.b	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30
Mus	ANCESTRAL SPECIES	3	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b #25	ENSGT00940000165990.a	ENSGT00940000165990.b	ENSGT00940000161273 #27	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28
Mus_A	ANCESTRAL SPECIES	3	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b.b #25	ENSGT00940000165990.b.a	ENSGT00940000161273 #27	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29
Mus_B	ANCESTRAL SPECIES	5	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b.b #25	ENSGT00940000165990.b.a	ENSGT00940000161273 #27	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29
Mus_C	ANCESTRAL SPECIES	2	ENSGT00900000142372	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00960000191437	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b #25	ENSGT00940000162562.A.a.a.b.b #25	ENSGT00940000165990.b.a	ENSGT00940000161273 #27	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29
spretus	MODERN SPECIES	13	Txndc12 (MGP_SPRETEiJ_G0027244) #9	MGP_SPRETEiJ_G0027245	Kti12 (MGP_SPRETEiJ_G0027246)	Rab3b (MGP_SPRETEiJ_G0027247) #10	Nrd1 (MGP_SPRETEiJ_G0027248) #11	Osbpl9 (MGP_SPRETEiJ_G0027249) #12	Calr4 (MGP_SPRETEiJ_G0027250)	Eps15 (MGP_SPRETEiJ_G0027251) #13	Ttc39a (MGP_SPRETEiJ_G0027252) #14	Rnf11 (MGP_SPRETEiJ_G0027253) #15	4930522H14Rik (MGP_SPRETEiJ_G0027254) #16	Cdkn2c (MGP_SPRETEiJ_G0027255) #17	Faf1 (MGP_SPRETEiJ_G0027256) #18	Dmrta2 (MGP_SPRETEiJ_G0027257) #19	Elavl4 (MGP_SPRETEiJ_G0027258) #20	Agbl4 (MGP_SPRETEiJ_G0027259) #22	Bend5 (MGP_SPRETEiJ_G0027260) #21	Spata6 (MGP_SPRETEiJ_G0027261) #23	Slc5a9 (MGP_SPRETEiJ_G0027262) #24	Skint7 (MGP_SPRETEiJ_G0027263)	MGP_SPRETEiJ_G0027264	Skint1 (MGP_SPRETEiJ_G0027265) #25	Skint2 (MGP_SPRETEiJ_G0027266) #25	Skint10 (MGP_SPRETEiJ_G0027267)	MGP_SPRETEiJ_G0027269	Trabd2b (MGP_SPRETEiJ_G0027270) #27	MGP_SPRETEiJ_G0027271	Foxd2 (MGP_SPRETEiJ_G0027272)	Foxe3 (MGP_SPRETEiJ_G0027273)	Cmpk1 (MGP_SPRETEiJ_G0027274)	Stil (MGP_SPRETEiJ_G0027275) #28
Mouse	MODERN SPECIES	13	Btf3l4 (ENSMUSG00000028568) #8	Txndc12 (ENSMUSG00000028567) #9	Kti12 (ENSMUSG00000073775)	Rab3b (ENSMUSG00000003411) #10	Nrd1 (ENSMUSG00000053510) #11	Osbpl9 (ENSMUSG00000028559) #12	Calr4 (ENSMUSG00000028558)	Eps15 (ENSMUSG00000028552) #13	Ttc39a (ENSMUSG00000028555) #14	Rnf11 (ENSMUSG00000028557) #15	4930522H14Rik (ENSMUSG00000060491) #16	Cdkn2c (ENSMUSG00000028551) #17	Faf1 (ENSMUSG00000010517) #18	Dmrta2 (ENSMUSG00000047143) #19	Elavl4 (ENSMUSG00000028546) #20	Agbl4 (ENSMUSG00000061298) #22	Bend5 (ENSMUSG00000028545) #21	Spata6 (ENSMUSG00000034401) #23	Slc5a9 (ENSMUSG00000028544) #24	Skint8 (ENSMUSG00000078599)	Skint7 (ENSMUSG00000049214)	Skint1 (ENSMUSG00000089773) #25	Skint4 (ENSMUSG00000055960) #25	Skint3 (ENSMUSG00000070868) #25	Skint9 (ENSMUSG00000049972)	Skint2 (ENSMUSG00000034359) #25	Skint10 (ENSMUSG00000048766)	Skint6 (ENSMUSG00000087194) #25	Skint5 (ENSMUSG00000078598) #25	Skint11 (ENSMUSG00000057977)	Trabd2b (ENSMUSG00000070867) #27
Ryukyu mouse	MODERN SPECIES	13	Txndc12 (MGP_CAROLIEiJ_G0026275) #9	MGP_CAROLIEiJ_G0026276	Kti12 (MGP_CAROLIEiJ_G0026277)	Rab3b (MGP_CAROLIEiJ_G0026278) #10	Nrd1 (MGP_CAROLIEiJ_G0026279) #11	Osbpl9 (MGP_CAROLIEiJ_G0026280) #12	MGP_CAROLIEiJ_G0026281	Eps15 (MGP_CAROLIEiJ_G0026282) #13	Ttc39a (MGP_CAROLIEiJ_G0026283) #14	Rnf11 (MGP_CAROLIEiJ_G0026284) #15	4930522H14Rik (MGP_CAROLIEiJ_G0026285) #16	Cdkn2c (MGP_CAROLIEiJ_G0026286) #17	Faf1 (MGP_CAROLIEiJ_G0026287) #18	Dmrta2 (MGP_CAROLIEiJ_G0026288) #19	Elavl4 (MGP_CAROLIEiJ_G0026289) #20	Agbl4 (MGP_CAROLIEiJ_G0026290) #22	Bend5 (MGP_CAROLIEiJ_G0026291) #21	Spata6 (MGP_CAROLIEiJ_G0026292) #23	Slc5a9 (MGP_CAROLIEiJ_G0026293) #24	MGP_CAROLIEiJ_G0026294	Skint1 (MGP_CAROLIEiJ_G0026296) #25	MGP_CAROLIEiJ_G0026297 #25	Skint10 (MGP_CAROLIEiJ_G0026298)	Trabd2b (MGP_CAROLIEiJ_G0026299) #27	Foxd2 (MGP_CAROLIEiJ_G0026300)	Foxe3 (MGP_CAROLIEiJ_G0026301)	Cmpk1 (MGP_CAROLIEiJ_G0026302)	Stil (MGP_CAROLIEiJ_G0026303) #28	Tal1 (MGP_CAROLIEiJ_G0026304) #29	MGP_CAROLIEiJ_G0026305 #30	Cyp4x1 (MGP_CAROLIEiJ_G0026306) #31
Shrew mouse	MODERN SPECIES	19	Txndc12 (MGP_PahariEiJ_G0028608) #9	MGP_PahariEiJ_G0028609	Kti12 (MGP_PahariEiJ_G0028610)	Rab3b (MGP_PahariEiJ_G0028611) #10	Nrd1 (MGP_PahariEiJ_G0028612) #11	Osbpl9 (MGP_PahariEiJ_G0028613) #12	Calr4 (MGP_PahariEiJ_G0028614)	Eps15 (MGP_PahariEiJ_G0028615) #13	Ttc39a (MGP_PahariEiJ_G0028616) #14	Rnf11 (MGP_PahariEiJ_G0028617) #15	4930522H14Rik (MGP_PahariEiJ_G0028618) #16	Cdkn2c (MGP_PahariEiJ_G0028619) #17	Faf1 (MGP_PahariEiJ_G0028620) #18	Dmrta2 (MGP_PahariEiJ_G0028621) #19	Elavl4 (MGP_PahariEiJ_G0028622) #20	Agbl4 (MGP_PahariEiJ_G0028623) #22	Bend5 (MGP_PahariEiJ_G0028624) #21	Spata6 (MGP_PahariEiJ_G0028625) #23	Slc5a9 (MGP_PahariEiJ_G0028626) #24	MGP_PahariEiJ_G0028627	MGP_PahariEiJ_G0028628	Skint1 (MGP_PahariEiJ_G0028629) #25	MGP_PahariEiJ_G0028630 #25	MGP_PahariEiJ_G0028631	Trabd2b (MGP_PahariEiJ_G0028632) #27	MGP_PahariEiJ_G0028633	Foxd2 (MGP_PahariEiJ_G0028634)	Foxe3 (MGP_PahariEiJ_G0028635)	Cmpk1 (MGP_PahariEiJ_G0028636)	Stil (MGP_PahariEiJ_G0028637) #28	Tal1 (MGP_PahariEiJ_G0028638) #29
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	98	Gng12 (ENSJJAG00000017730)	Fgd4 (ENSJJAG00000018423)	ENSJJAG00000013851	Dnm1l (ENSJJAG00000023169)	Yars2 (ENSJJAG00000000641)	Pkp2 (ENSJJAG00000014586)	Syt10 (ENSJJAG00000019374)	Alg10b (ENSJJAG00000019582)	Cdkn2c (ENSJJAG00000020524) #17	Faf1 (ENSJJAG00000021352) #18	Dmrta2 (ENSJJAG00000021824) #19	ENSJJAG00000014086	Elavl4 (ENSJJAG00000023099) #20	ENSJJAG00000004932 #22	Bend5 (ENSJJAG00000007543) #21	ENSJJAG00000009281 #22	Spata6 (ENSJJAG00000010848) #23	Foxd2 (ENSJJAG00000014328)	ENSJJAG00000013211	Pdzk1ip1 (ENSJJAG00000013927) #30	Cyp4x1 (ENSJJAG00000009131) #31
Lesser Egyptian jerboa	MODERN SPECIES	98	ENSJJAG00000016243	Gadd45a (ENSJJAG00000016764)	Gng12 (ENSJJAG00000017730)	Fgd4 (ENSJJAG00000018423)	ENSJJAG00000013851	Dnm1l (ENSJJAG00000023169)	Yars2 (ENSJJAG00000000641)	Pkp2 (ENSJJAG00000014586)	Syt10 (ENSJJAG00000019374)	Alg10b (ENSJJAG00000019582)	Cdkn2c (ENSJJAG00000020524) #17	Faf1 (ENSJJAG00000021352) #18	Dmrta2 (ENSJJAG00000021824) #19	ENSJJAG00000014086	Elavl4 (ENSJJAG00000023099) #20	ENSJJAG00000004932 #22	Bend5 (ENSJJAG00000007543) #21	ENSJJAG00000009281 #22	Spata6 (ENSJJAG00000010848) #23	Foxd2 (ENSJJAG00000014328)	ENSJJAG00000013211	Pdzk1ip1 (ENSJJAG00000013927) #30	Cyp4x1 (ENSJJAG00000009131) #31
Primates	ANCESTRAL SPECIES	4	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.e #31	ENSGT00940000155173 #32	ENSGT00940000163504
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.e #31	ENSGT00940000163504	ENSGT00940000161441 #33	ENSGT00390000011196 #36
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	274	ZFYVE9 (ENSOGAG00000015445) #7	BTF3L4 (ENSOGAG00000030256) #8	TXNDC12 (ENSOGAG00000003798) #9	RAB3B (ENSOGAG00000003796) #10	ENSOGAG00000003792 #11	OSBPL9 (ENSOGAG00000003787) #12	ENSOGAG00000026601	EPS15 (ENSOGAG00000001077) #13	TTC39A (ENSOGAG00000011685) #14	RNF11 (ENSOGAG00000011682) #15	CDKN2C (ENSOGAG00000003625) #17	FAF1 (ENSOGAG00000003624) #18	ENSOGAG00000033138	DMRTA2 (ENSOGAG00000026143) #19	ELAVL4 (ENSOGAG00000016990) #20	ENSOGAG00000026942 #22	BEND5 (ENSOGAG00000005779) #21	ENSOGAG00000004600 #22	SPATA6 (ENSOGAG00000005014) #23	SLC5A9 (ENSOGAG00000005008) #24
Bushbaby	MODERN SPECIES	274	TXNDC12 (ENSOGAG00000003798) #9	RAB3B (ENSOGAG00000003796) #10	ENSOGAG00000003792 #11	OSBPL9 (ENSOGAG00000003787) #12	ENSOGAG00000026601	EPS15 (ENSOGAG00000001077) #13	TTC39A (ENSOGAG00000011685) #14	RNF11 (ENSOGAG00000011682) #15	CDKN2C (ENSOGAG00000003625) #17	FAF1 (ENSOGAG00000003624) #18	ENSOGAG00000033138	DMRTA2 (ENSOGAG00000026143) #19	ELAVL4 (ENSOGAG00000016990) #20	ENSOGAG00000026942 #22	BEND5 (ENSOGAG00000005779) #21	ENSOGAG00000004600 #22	SPATA6 (ENSOGAG00000005014) #23	SLC5A9 (ENSOGAG00000005008) #24
Lemuriformes	ANCESTRAL SPECIES		ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296.qb.a #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.e #31	ENSGT00940000163504	ENSGT00940000161441 #33	ENSGT00390000011196 #36
Mouse lemur	MODERN SPECIES	11	TXNDC12 (ENSMICG00000042975) #9	RAB3B (ENSMICG00000036580) #10	NRDC (ENSMICG00000002748) #11	ENSMICG00000029083	ENSMICG00000002731 #12	ENSMICG00000044074	ENSMICG00000001200 #13	TTC39A (ENSMICG00000008377) #14	ENSMICG00000047946 #15	ENSMICG00000005503	C1orf185 (ENSMICG00000004061) #16	CDKN2C (ENSMICG00000033935) #17	FAF1 (ENSMICG00000003299) #18	DMRTA2 (ENSMICG00000044233) #19	ELAVL4 (ENSMICG00000003286) #20	AGBL4 (ENSMICG00000003275) #22	ENSMICG00000037766	BEND5 (ENSMICG00000003282) #21	SPATA6 (ENSMICG00000003269) #23	SLC5A9 (ENSMICG00000012426) #24	TRABD2B (ENSMICG00000033266) #27	FOXD2 (ENSMICG00000034204)	FOXE3 (ENSMICG00000029422)	CMPK1 (ENSMICG00000005386)	STIL (ENSMICG00000005402) #28	TAL1 (ENSMICG00000045732) #29	PDZK1IP1 (ENSMICG00000043731) #30	CYP4B1 (ENSMICG00000000962) #33	ENSMICG00000031270	CYP4A11 (ENSMICG00000000965)	EFCAB14 (ENSMICG00000047159) #36
Lemuriformes_a	ANCESTRAL SPECIES	20	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296.qb.a #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.e #31	ENSGT00940000163504	ENSGT00940000161441 #33	ENSGT00390000011196 #36
Greater bamboo lemur	MODERN SPECIES	669				ENSPSMG00000003628 #12	ENSPSMG00000003562	ENSPSMG00000003543	EPS15 (ENSPSMG00000003371) #13	TTC39A (ENSPSMG00000003263) #14	RNF11 (ENSPSMG00000003177) #15	C1orf185 (ENSPSMG00000003162) #16	CDKN2C (ENSPSMG00000003155) #17	FAF1 (ENSPSMG00000003116) #18	DMRTA2 (ENSPSMG00000003033) #19	ELAVL4 (ENSPSMG00000002850) #20	BEND5 (ENSPSMG00000002676) #21	AGBL4 (ENSPSMG00000002663) #22
Coquerels sifaka	MODERN SPECIES	162	ENSPCOG00000026062 #8	TXNDC12 (ENSPCOG00000022275) #9	RAB3B (ENSPCOG00000018696) #10	NRDC (ENSPCOG00000024524) #11	OSBPL9 (ENSPCOG00000027695) #12	ENSPCOG00000012900 #13	TTC39A (ENSPCOG00000018198) #14	RNF11 (ENSPCOG00000015322) #15	C1orf185 (ENSPCOG00000025481) #16	ENSPCOG00000026759	CDKN2C (ENSPCOG00000019258) #17	FAF1 (ENSPCOG00000025141) #18	ENSPCOG00000028658	DMRTA2 (ENSPCOG00000028074) #19	ELAVL4 (ENSPCOG00000024957) #20	AGBL4 (ENSPCOG00000019895) #22	BEND5 (ENSPCOG00000023490) #21	SPATA6 (ENSPCOG00000008715) #23	SLC5A9 (ENSPCOG00000004667) #24
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000155173 #32
Tarsier	MODERN SPECIES	4260															BEND5 (ENSTSYG00000007521) #21	AGBL4 (ENSTSYG00000002596) #22	SPATA6 (ENSTSYG00000004949) #23	ENSTSYG00000033425	SLC5A9 (ENSTSYG00000008041) #24
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000154296.jb.a #8	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000155173 #32
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000154295.y.a.a.b	ENSGT00940000154296.kb #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000163504	ENSGT00940000161441 #33	ENSGT00390000011196 #36
Mas night monkey	MODERN SPECIES	679	TTC39A (ENSANAG00000035053) #14	ENSANAG00000035696 #15	C1orf185 (ENSANAG00000033385) #16	ENSANAG00000037551	ENSANAG00000031477	CDKN2C (ENSANAG00000033643) #17	ENSANAG00000037373	ENSANAG00000023034	FAF1 (ENSANAG00000033702) #18	ENSANAG00000028849	ENSANAG00000028980	ENSANAG00000022650	DMRTA2 (ENSANAG00000033164) #19	ELAVL4 (ENSANAG00000030598) #20	ENSANAG00000031055	AGBL4 (ENSANAG00000022272) #22	BEND5 (ENSANAG00000018794) #21	SPATA6 (ENSANAG00000033722) #23	SLC5A9 (ENSANAG00000022766) #24	TRABD2B (ENSANAG00000036722) #27	FOXE3 (ENSANAG00000019840)	CMPK1 (ENSANAG00000033187)	STIL (ENSANAG00000025280) #28	TAL1 (ENSANAG00000018338) #29	PDZK1IP1 (ENSANAG00000037310) #30	CYP4Z1 (ENSANAG00000032825) #31	CYP4X1 (ENSANAG00000034247) #31	ENSANAG00000035850	CYP4A11 (ENSANAG00000019404)	EFCAB14 (ENSANAG00000023693) #36	TEX38 (ENSANAG00000022553) #37
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000154290.a #7	ENSGT00940000154296.kb #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000163504	ENSGT00940000161441 #33	ENSGT00390000011196 #36
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000154290.a #7	ENSGT00940000154296.kb #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000163504	ENSGT00940000161441 #33	ENSGT00390000011196 #36
Bolivian squirrel monkey	MODERN SPECIES	45	ENSSBOG00000000079 #11	OSBPL9 (ENSSBOG00000022113) #12	EPS15 (ENSSBOG00000021478) #13	TTC39A (ENSSBOG00000034095) #14	RNF11 (ENSSBOG00000029247) #15	C1orf185 (ENSSBOG00000034584) #16	CDKN2C (ENSSBOG00000035100) #17	FAF1 (ENSSBOG00000035904) #18	ENSSBOG00000021083	ENSSBOG00000024407	ENSSBOG00000031899	ENSSBOG00000035179	ENSSBOG00000029666	DMRTA2 (ENSSBOG00000025121) #19	ELAVL4 (ENSSBOG00000022965) #20	AGBL4 (ENSSBOG00000031864) #22	BEND5 (ENSSBOG00000015358) #21	SPATA6 (ENSSBOG00000026364) #23	ENSSBOG00000034864	SLC5A9 (ENSSBOG00000031062) #24	TRABD2B (ENSSBOG00000021713) #27	CMPK1 (ENSSBOG00000023132)	STIL (ENSSBOG00000035433) #28	PDZK1IP1 (ENSSBOG00000033779) #30	ENSSBOG00000035852	NR2F2 (ENSSBOG00000020466)	MCTP2 (ENSSBOG00000029271)	RGMA (ENSSBOG00000023291)	CHD2 (ENSSBOG00000023754)	ENSSBOG00000033087	ENSSBOG00000000134
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	430														ENSCCAG00000028237	BEND5 (ENSCCAG00000027560) #21	AGBL4 (ENSCCAG00000026572) #22	ENSCCAG00000025907	SPATA6 (ENSCCAG00000025511) #23	SLC5A9 (ENSCCAG00000024082) #24	TRABD2B (ENSCCAG00000023756) #27	FOXD2 (ENSCCAG00000031918)	FOXE3 (ENSCCAG00000018685)	CMPK1 (ENSCCAG00000013287)
Capuchin	MODERN SPECIES	214	TXNDC12 (ENSCCAG00000021353) #9	RAB3B (ENSCCAG00000035544) #10	NRDC (ENSCCAG00000035997) #11	ENSCCAG00000022769 #12	EPS15 (ENSCCAG00000020337) #13	TTC39A (ENSCCAG00000029112) #14	RNF11 (ENSCCAG00000021392) #15	C1orf185 (ENSCCAG00000035941) #16	ENSCCAG00000024446	ENSCCAG00000020651	CDKN2C (ENSCCAG00000020423) #17	ENSCCAG00000027169	FAF1 (ENSCCAG00000024129) #18	DMRTA2 (ENSCCAG00000026118) #19	ELAVL4 (ENSCCAG00000024797) #20	ENSCCAG00000027782 #22
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000155173 #32
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000163504	ENSGT00940000161441 #33
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000163504.a	ENSGT00940000161441 #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.a.a	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31	ENSGT00940000163504.a.b
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.b	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31
Pan	ANCESTRAL SPECIES		ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00530000063821.b.a #23	ENSGT00990000204587	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.b	ENSGT00940000160927.f #31	ENSGT00940000160927.e #31
Chimpanzee	MODERN SPECIES		RAB3B (ENSPTRG00000000732) #10	NRDC (ENSPTRG00000000731) #11	OSBPL9 (ENSPTRG00000000730) #12	EPS15 (ENSPTRG00000000729) #13	TTC39A (ENSPTRG00000000728) #14	RNF11 (ENSPTRG00000041089) #15	ENSPTRG00000046419	C1H1orf185 (ENSPTRG00000030611) #16	CDKN2C (ENSPTRG00000000726) #17	FAF1 (ENSPTRG00000000725) #18	DMRTA2 (ENSPTRG00000000724) #19	ENSPTRG00000051047	ENSPTRG00000051295	ELAVL4 (ENSPTRG00000000723) #20	BEND5 (ENSPTRG00000000721) #21	AGBL4 (ENSPTRG00000043865) #22	SPATA6 (ENSPTRG00000000718) #23	ENSPTRG00000048491	SLC5A9 (ENSPTRG00000000716) #24	ENSPTRG00000043073 #25	TRABD2B (ENSPTRG00000052213) #27	FOXD2 (ENSPTRG00000030617)	FOXE3 (ENSPTRG00000030618)	CMPK1 (ENSPTRG00000000712)	STIL (ENSPTRG00000000711) #28	TAL1 (ENSPTRG00000051380) #29	PDZK1IP1 (ENSPTRG00000000709) #30	ENSPTRG00000000708	CYP4Z1 (ENSPTRG00000000707) #31	CYP4X1 (ENSPTRG00000000706) #31	CYP4A22 (ENSPTRG00000000705)
Bonobo	MODERN SPECIES		RAB3B (ENSPPAG00000044044) #10	NRDC (ENSPPAG00000034186) #11	OSBPL9 (ENSPPAG00000021541) #12	EPS15 (ENSPPAG00000033044) #13	TTC39A (ENSPPAG00000031439) #14	RNF11 (ENSPPAG00000039746) #15	ENSPPAG00000032042	C1orf185 (ENSPPAG00000024891) #16	CDKN2C (ENSPPAG00000038172) #17	FAF1 (ENSPPAG00000032838) #18	ENSPPAG00000033541 #19	ENSPPAG00000035672	ENSPPAG00000023840	ELAVL4 (ENSPPAG00000042402) #20	BEND5 (ENSPPAG00000040466) #21	AGBL4 (ENSPPAG00000033362) #22	SPATA6 (ENSPPAG00000028728) #23	ENSPPAG00000009942	SLC5A9 (ENSPPAG00000034646) #24	TRABD2B (ENSPPAG00000015081) #27	ENSPPAG00000027235	STIL (ENSPPAG00000037591) #28	TAL1 (ENSPPAG00000033189) #29	PDZK1IP1 (ENSPPAG00000032727) #30	CYP4A22 (ENSPPAG00000030867)	CYP4Z1 (ENSPPAG00000033041) #31	CYP4X1 (ENSPPAG00000034593) #31	CYP4A11 (ENSPPAG00000040374)	CYP4B1 (ENSPPAG00000033977) #33	EFCAB14 (ENSPPAG00000043833) #36	TEX38 (ENSPPAG00000034178) #37
Human	MODERN SPECIES		BTF3L4 (ENSG00000134717) #8	KTI12 (ENSG00000198841)	TXNDC12 (ENSG00000117862) #9	RAB3B (ENSG00000169213) #10	NRDC (ENSG00000078618) #11	OSBPL9 (ENSG00000117859) #12	EPS15 (ENSG00000085832) #13	TTC39A (ENSG00000085831) #14	RNF11 (ENSG00000123091) #15	C1orf185 (ENSG00000204006) #16	CDKN2C (ENSG00000123080) #17	FAF1 (ENSG00000185104) #18	DMRTA2 (ENSG00000142700) #19	ELAVL4 (ENSG00000162374) #20	BEND5 (ENSG00000162373) #21	AGBL4 (ENSG00000186094) #22	SPATA6 (ENSG00000132122) #23	SLC5A9 (ENSG00000117834) #24	TRABD2B (ENSG00000269113) #27	FOXD2 (ENSG00000186564)	FOXE3 (ENSG00000186790)	CMPK1 (ENSG00000162368)	STIL (ENSG00000123473) #28	TAL1 (ENSG00000162367) #29	PDZK1IP1 (ENSG00000162366) #30	CYP4A22 (ENSG00000162365)	CYP4Z1 (ENSG00000186160) #31	CYP4X1 (ENSG00000186377) #31	CYP4A11 (ENSG00000187048)	CYP4B1 (ENSG00000142973) #33	EFCAB14 (ENSG00000159658) #36
Gorilla	MODERN SPECIES		RAB3B (ENSGGOG00000001562) #10	NRDC (ENSGGOG00000004793) #11	OSBPL9 (ENSGGOG00000004787) #12	EPS15 (ENSGGOG00000006160) #13	TTC39A (ENSGGOG00000012965) #14	ENSGGOG00000025934	RNF11 (ENSGGOG00000004919) #15	ENSGGOG00000040829	C1orf185 (ENSGGOG00000015902) #16	CDKN2C (ENSGGOG00000017023) #17	FAF1 (ENSGGOG00000013273) #18	ENSGGOG00000013269 #19	ENSGGOG00000024575	ELAVL4 (ENSGGOG00000000634) #20	BEND5 (ENSGGOG00000003566) #21	AGBL4 (ENSGGOG00000043434) #22	SPATA6 (ENSGGOG00000001284) #23	ENSGGOG00000028320	SLC5A9 (ENSGGOG00000012140) #24	ENSGGOG00000044020 #25	TRABD2B (ENSGGOG00000037702) #27	ENSGGOG00000039974	STIL (ENSGGOG00000000512) #28	TAL1 (ENSGGOG00000043148) #29	PDZK1IP1 (ENSGGOG00000011765) #30	ENSGGOG00000015363	ENSGGOG00000001801 #31	CYP4X1 (ENSGGOG00000000133) #31	ENSGGOG00000021983	CYP4B1 (ENSGGOG00000016855) #33	EFCAB14 (ENSGGOG00000012677) #36
Orangutan	MODERN SPECIES		BTF3L4 (ENSPPYG00000001353) #8	TXNDC12 (ENSPPYG00000001354) #9	RAB3B (ENSPPYG00000040594) #10	NRDC (ENSPPYG00000001357) #11	OSBPL9 (ENSPPYG00000001358) #12	EPS15 (ENSPPYG00000001359) #13	TTC39A (ENSPPYG00000001360) #14	RNF11 (ENSPPYG00000040291) #15	ENSPPYG00000001362	ENSPPYG00000039022	C1orf185 (ENSPPYG00000001364) #16	CDKN2C (ENSPPYG00000001365) #17	FAF1 (ENSPPYG00000029417) #18	DMRTA2 (ENSPPYG00000001366) #19	ELAVL4 (ENSPPYG00000001367) #20	AGBL4 (ENSPPYG00000001368) #22	ENSPPYG00000038734	BEND5 (ENSPPYG00000001371) #21	SPATA6 (ENSPPYG00000001372) #23	SLC5A9 (ENSPPYG00000001373) #24	TRABD2B (ENSPPYG00000001376) #27	FOXD2 (ENSPPYG00000001378)	CMPK1 (ENSPPYG00000001380)	STIL (ENSPPYG00000001381) #28	ENSPPYG00000035408 #29	PDZK1IP1 (ENSPPYG00000001383) #30	CYP4Z1 (ENSPPYG00000001386) #31	CYP4X1 (ENSPPYG00000001384) #31	CYP4A22 (ENSPPYG00000001385)	CYP4B1 (ENSPPYG00000001387) #33	ENSPPYG00000001388
Gibbon	MODERN SPECIES	2	BTF3L4 (ENSNLEG00000016041) #8	TXNDC12 (ENSNLEG00000034609) #9	RAB3B (ENSNLEG00000016065) #10	NRDC (ENSNLEG00000016067) #11	OSBPL9 (ENSNLEG00000016138) #12	ENSNLEG00000016192 #13	TTC39A (ENSNLEG00000016232) #14	ENSNLEG00000033471	ENSNLEG00000029189	CDKN2C (ENSNLEG00000016259) #17	FAF1 (ENSNLEG00000016263) #18	ENSNLEG00000027959 #19	ENSNLEG00000032288	ELAVL4 (ENSNLEG00000016303) #20	BEND5 (ENSNLEG00000033925) #21	AGBL4 (ENSNLEG00000016327) #22	SPATA6 (ENSNLEG00000016340) #23	ENSNLEG00000036336	SLC5A9 (ENSNLEG00000016351) #24	ENSNLEG00000034414 #25	ENSNLEG00000016372 #27	ENSNLEG00000016374	STIL (ENSNLEG00000016386) #28	ENSNLEG00000027215 #29	PDZK1IP1 (ENSNLEG00000016402) #30	ENSNLEG00000016409	EFCAB14 (ENSNLEG00000016421) #36	TEX38 (ENSNLEG00000016440) #37	ENSNLEG00000030967	MOB3C (ENSNLEG00000016442)	MKNK1 (ENSNLEG00000016447)
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000154690.ub.b #12	ENSGT00940000155751 #13	ENSGT00940000154319.u.b.b	ENSGT00950000183073.b.p	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.e #31	ENSGT00940000155173 #32	ENSGT00940000163504.c	ENSGT00940000161441 #33
Rhinopithecus	ANCESTRAL SPECIES	172															ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.e #31	ENSGT00940000163504.c	ENSGT00940000161441 #33	ENSGT00390000011196.e #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT00620000089223
Golden snub-nosed monkey	MODERN SPECIES	2059															BEND5 (ENSRROG00000038073) #21	AGBL4 (ENSRROG00000023433) #22	ENSRROG00000041785 #23
Black snub-nosed monkey	MODERN SPECIES	220																AGBL4 (ENSRBIG00000036871) #22	BEND5 (ENSRBIG00000036850) #21	SPATA6 (ENSRBIG00000038558) #23	SLC5A9 (ENSRBIG00000010075) #24	ENSRBIG00000040410 #25	ENSRBIG00000040965 #26	ENSRBIG00000044514
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690.ub.b #12	ENSGT00940000155751 #13	ENSGT00940000154319.u.b.b	ENSGT00950000183073.b.p	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.d	ENSGT00940000160927.e #31	ENSGT00940000163504.c	ENSGT00940000161441 #33
Vervet Monkey	MODERN SPECIES	12	BTF3L4 (ENSCSAG00000001271) #8	TXNDC12 (ENSCSAG00000001270) #9	RAB3B (ENSCSAG00000001269) #10	NRDC (ENSCSAG00000001268) #11	OSBPL9 (ENSCSAG00000001267) #12	EPS15 (ENSCSAG00000001266) #13	TTC39A (ENSCSAG00000001265) #14	RNF11 (ENSCSAG00000001264) #15	C1orf185 (ENSCSAG00000001262) #16	CDKN2C (ENSCSAG00000001261) #17	FAF1 (ENSCSAG00000001260) #18	DMRTA2 (ENSCSAG00000001259) #19	ENSCSAG00000001258	ELAVL4 (ENSCSAG00000001257) #20	BEND5 (ENSCSAG00000001256) #21	ENSCSAG00000001255 #22	SPATA6 (ENSCSAG00000001254) #23	SLC5A9 (ENSCSAG00000001253) #24	ENSCSAG00000001252 #25	ENSCSAG00000001251 #26	TRABD2B (ENSCSAG00000001250) #27	FOXD2 (ENSCSAG00000000144)	FOXE3 (ENSCSAG00000000143)	CMPK1 (ENSCSAG00000001249)	STIL (ENSCSAG00000001248) #28	TAL1 (ENSCSAG00000001247) #29	PDZK1IP1 (ENSCSAG00000001246) #30	ENSCSAG00000000142	CYP4A22 (ENSCSAG00000001245)	CYP4X1 (ENSCSAG00000001244) #31	ENSCSAG00000001243
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00910000146631	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000154326.a.a.h.f	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399 #20	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.c.a	ENSGT00940000160927.e #31	ENSGT00940000163504.c.b	ENSGT00940000161441 #33
Macaca	ANCESTRAL SPECIES		ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00910000146631	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000154326.a.a.h.f	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399 #20	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589.g.b	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.c.a	ENSGT00940000160927.e #31	ENSGT00940000163504.c.b	ENSGT00940000161441 #33
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000154690.ub.b #12	ENSGT00940000155751 #13	ENSGT00940000154319.u.b.b	ENSGT00950000182917.a.b.a #14	ENSGT00940000163721	ENSGT01030000238095.a.a.b.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399 #20	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.b.b.d	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000160589.h	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.c.a	ENSGT00940000160927.e #31	ENSGT00940000163504.c.b	ENSGT00940000161441 #33	ENSGT00390000011196.e #36	ENSGT00390000016446 #37
Crab-eating macaque	MODERN SPECIES		NRDC (ENSMFAG00000036148) #11	OSBPL9 (ENSMFAG00000043512) #12	EPS15 (ENSMFAG00000044060) #13	ENSMFAG00000038258	ENSMFAG00000053090	TTC39A (ENSMFAG00000037823) #14	ENSMFAG00000003664	ENSMFAG00000047249	ENSMFAG00000003545	C1orf185 (ENSMFAG00000000049) #16	CDKN2C (ENSMFAG00000024172) #17	FAF1 (ENSMFAG00000031563) #18	DMRTA2 (ENSMFAG00000062675) #19	ENSMFAG00000020472	ELAVL4 (ENSMFAG00000039866) #20	AGBL4 (ENSMFAG00000032630) #22	ENSMFAG00000030500	ENSMFAG00000051495	SLC5A9 (ENSMFAG00000035463) #24	ENSMFAG00000049065 #25	ENSMFAG00000003658 #26	TRABD2B (ENSMFAG00000003902) #27	ENSMFAG00000035854	STIL (ENSMFAG00000024408) #28	ENSMFAG00000063835	TAL1 (ENSMFAG00000047639) #29	PDZK1IP1 (ENSMFAG00000002324) #30	CYP4A45P (ENSMFAG00000042796)	CYP4X1 (ENSMFAG00000000631) #31	CYP4A11 (ENSMFAG00000032544)	CYP4B1 (ENSMFAG00000031207) #33
Rhesus	MODERN SPECIES		RAB3B (ENSMMUG00000014035) #10	ENSMMUG00000047290	NRDC (ENSMMUG00000004738) #11	OSBPL9 (ENSMMUG00000004735) #12	EPS15 (ENSMMUG00000012055) #13	ENSMMUG00000043311	ENSMMUG00000058438	TTC39A (ENSMMUG00000004564) #14	RNF11 (ENSMMUG00000012112)	ENSMMUG00000058388	C1H1orf185 (ENSMMUG00000006651) #16	CDKN2C (ENSMMUG00000019057) #17	FAF1 (ENSMMUG00000019056) #18	DMRTA2 (ENSMMUG00000052908) #19	ELAVL4 (ENSMMUG00000021933) #20	BEND5 (ENSMMUG00000008828) #22	ENSMMUG00000056990	SPATA6 (ENSMMUG00000009282) #23	SLC5A9 (ENSMMUG00000007558) #24	ENSMMUG00000049296	TRABD2B (ENSMMUG00000032139) #27	ENSMMUG00000057159	FOXD2 (ENSMMUG00000018556)	FOXE3 (ENSMMUG00000064635)	CMPK1 (ENSMMUG00000017375)	STIL (ENSMMUG00000020389) #28	PDZK1IP1 (ENSMMUG00000061850) #29	CYP4A11 (ENSMMUG00000032143)	CYP4X1 (ENSMMUG00000018867) #31	CYP4A45 (ENSMMUG00000019871)	CYP4B1 (ENSMMUG00000019873) #33
Pig-tailed macaque	MODERN SPECIES	217	TTC39A (ENSMNEG00000043223) #14	RNF11 (ENSMNEG00000044248) #15	ENSMNEG00000043444	C1orf185 (ENSMNEG00000034636) #16	ENSMNEG00000042352	ENSMNEG00000039144	CDKN2C (ENSMNEG00000031706) #17	FAF1 (ENSMNEG00000029437) #18	DMRTA2 (ENSMNEG00000036377) #19	ENSMNEG00000029667	ENSMNEG00000014551	ENSMNEG00000021112	ELAVL4 (ENSMNEG00000035576) #20	ENSMNEG00000030170	BEND5 (ENSMNEG00000030902) #21	AGBL4 (ENSMNEG00000028894) #22	SPATA6 (ENSMNEG00000036437) #23	SLC5A9 (ENSMNEG00000028284) #24	ENSMNEG00000042343 #25	ENSMNEG00000023828 #26	TRABD2B (ENSMNEG00000028952) #27	FOXD2 (ENSMNEG00000024922)	FOXE3 (ENSMNEG00000009558)	CMPK1 (ENSMNEG00000037131)	STIL (ENSMNEG00000044743) #28	TAL1 (ENSMNEG00000043031) #29	PDZK1IP1 (ENSMNEG00000034766) #30	ENSMNEG00000026248	CYP4X1 (ENSMNEG00000024746) #31	CYP4B1 (ENSMNEG00000041426) #33	EFCAB14 (ENSMNEG00000041371) #36
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797 #16	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00910000146631	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000154326.a.a.h.f	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399 #20	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000162562.B #26	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927.e #31	ENSGT00940000155173 #32	ENSGT00940000163504.c.b	ENSGT00940000163504.d
Olive baboon	MODERN SPECIES		RAB3B (ENSPANG00000018024) #10	NRDC (ENSPANG00000017224) #11	OSBPL9 (ENSPANG00000005884) #12	ENSPANG00000039561	ENSPANG00000032379	EPS15 (ENSPANG00000002942) #13	TTC39A (ENSPANG00000018680) #14	RNF11 (ENSPANG00000019410) #15	ENSPANG00000029418	C1orf185 (ENSPANG00000005045) #16	CDKN2C (ENSPANG00000035708) #17	FAF1 (ENSPANG00000015883) #18	DMRTA2 (ENSPANG00000012592) #19	ENSPANG00000033296	ELAVL4 (ENSPANG00000017754) #20	AGBL4 (ENSPANG00000034366) #22	SPATA6 (ENSPANG00000014017) #23	ENSPANG00000021593	ENSPANG00000005788	ENSPANG00000011532 #25	ENSPANG00000001010 #26	TRABD2B (ENSPANG00000012233) #27	FOXD2 (ENSPANG00000017227)	FOXE3 (ENSPANG00000011983)	CMPK1 (ENSPANG00000019968)	STIL (ENSPANG00000020258) #28	TAL1 (ENSPANG00000009893) #29	PDZK1IP1 (ENSPANG00000035359) #30	ENSPANG00000044971	ENSPANG00000039694	CYP4X1 (ENSPANG00000009894) #31
Cercopithecinae_d	ANCESTRAL SPECIES	191															ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000162562.A #25	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000163504.c.b	ENSGT00940000155173 #32	ENSGT00940000160927.e #31	ENSGT00940000160927.f #31
Drill	MODERN SPECIES	299															BEND5 (ENSMLEG00000030818) #21	AGBL4 (ENSMLEG00000030070) #22
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	360															BEND5 (ENSCATG00000007212) #21	AGBL4 (ENSCATG00000015277) #22	SPATA6 (ENSCATG00000012461) #23	SLC5A9 (ENSCATG00000003291) #24	ENSCATG00000002046 #25	TRABD2B (ENSCATG00000006160) #27	FOXD2 (ENSCATG00000024535)	FOXE3 (ENSCATG00000043314)	CMPK1 (ENSCATG00000013741)	STIL (ENSCATG00000034015) #28	TAL1 (ENSCATG00000015002) #29	PDZK1IP1 (ENSCATG00000037237) #30	CYP4A11 (ENSCATG00000037461)	CYP4X1 (ENSCATG00000037770) #31	CYP4Z1 (ENSCATG00000033296) #31
Sooty mangabey	MODERN SPECIES	357	EPS15 (ENSCATG00000040033) #13	ENSCATG00000034910	ENSCATG00000040273	TTC39A (ENSCATG00000037731) #14	RNF11 (ENSCATG00000015957) #15	ENSCATG00000033774	C1orf185 (ENSCATG00000035564) #16	CDKN2C (ENSCATG00000028763) #17	ENSCATG00000030251	FAF1 (ENSCATG00000006210) #18	DMRTA2 (ENSCATG00000036373) #19	ENSCATG00000033016	ENSCATG00000036372	ENSCATG00000043475	ELAVL4 (ENSCATG00000029867) #20	ENSCATG00000037973 #22	ENSCATG00000033836	ENSCATG00000037935 #21
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000163721	ENSGT00390000000797 #16	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000160927 #31	ENSGT00940000155173 #32	ENSGT00940000161441 #33	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Elephant	MODERN SPECIES	145	TXNDC12 (ENSLAFG00000016116) #9	RAB3B (ENSLAFG00000016112) #10	NRDC (ENSLAFG00000001255) #11	OSBPL9 (ENSLAFG00000001251) #12	ENSLAFG00000016931	EPS15 (ENSLAFG00000012528) #13	TTC39A (ENSLAFG00000021966) #14	ENSLAFG00000026503	C1orf185 (ENSLAFG00000030448) #16	CDKN2C (ENSLAFG00000009338) #17	ENSLAFG00000032567	FAF1 (ENSLAFG00000012030) #18	DMRTA2 (ENSLAFG00000021953) #19	ELAVL4 (ENSLAFG00000001087) #20	BEND5 (ENSLAFG00000003490) #21	ENSLAFG00000012535 #22	SPATA6 (ENSLAFG00000016279) #23	SLC5A9 (ENSLAFG00000016268) #24	ENSLAFG00000032111 #27	FOXD2 (ENSLAFG00000026547)	ENSLAFG00000006582	STIL (ENSLAFG00000006255) #28	TAL1 (ENSLAFG00000013880) #29	PDZK1IP1 (ENSLAFG00000029973) #30	ENSLAFG00000002985 #31	ENSLAFG00000027061	ENSLAFG00000011889 #32	CYP4B1 (ENSLAFG00000011142) #33	EFCAB14 (ENSLAFG00000011146) #36	TEX38 (ENSLAFG00000032346) #37	ATPAF1 (ENSLAFG00000022494)
Hyrax	MODERN SPECIES	6450															BEND5 (ENSPCAG00000010667) #21	AGBL4 (ENSPCAG00000010564) #22
Tenrec	MODERN SPECIES	7662																AGBL4 (ENSETEG00000017839) #22
Xenarthra	ANCESTRAL SPECIES	1218															ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24
Sloth	MODERN SPECIES	6856																AGBL4 (ENSCHOG00000007231) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1563													ENSDNOG00000005297	ENSDNOG00000048168 #22	BEND5 (ENSDNOG00000044786) #21	ENSDNOG00000032524 #22	SPATA6 (ENSDNOG00000037466) #23	SLC5A9 (ENSDNOG00000004042) #24
Armadillo	MODERN SPECIES	1563															ENSDNOG00000005297	ENSDNOG00000048168 #22	BEND5 (ENSDNOG00000044786) #21	ENSDNOG00000032524 #22	SPATA6 (ENSDNOG00000037466) #23	SLC5A9 (ENSDNOG00000004042) #24
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399.n #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546.j #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173.x.a #32	ENSGT00940000155173.x.b #32	ENSGT00940000161441.a #33	ENSGT00940000155173.w.b #32	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00390000002443	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399.n #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546.j #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173.x.a #32	ENSGT00940000155173.x.b #32	ENSGT00940000161441.a #33	ENSGT00940000155173.w.a #32	ENSGT00940000155173.w.b #32	ENSGT00390000011196 #36	ENSGT00390000016446 #37
Tasmanian devil	MODERN SPECIES	3	BTF3L4 (ENSSHAG00000025846) #8	TXNDC12 (ENSSHAG00000022310) #9	KTI12 (ENSSHAG00000032395)	RAB3B (ENSSHAG00000028384) #10	NRDC (ENSSHAG00000002791) #11	OSBPL9 (ENSSHAG00000004308) #12	ENSSHAG00000006819	EPS15 (ENSSHAG00000007854) #13	TTC39A (ENSSHAG00000008699) #14	ENSSHAG00000029224	ENSSHAG00000032332	CDKN2C (ENSSHAG00000028975) #17	FAF1 (ENSSHAG00000011175) #18	ELAVL4 (ENSSHAG00000030056) #20	ENSSHAG00000028157 #21	ENSSHAG00000008897 #22	SPATA6 (ENSSHAG00000009732) #23	ENSSHAG00000011466 #27	FOXD2 (ENSSHAG00000020552)	CMPK1 (ENSSHAG00000009766)	STIL (ENSSHAG00000010095) #28	TAL1 (ENSSHAG00000023407) #29	ENSSHAG00000025781 #30	ENSSHAG00000011157 #32	ENSSHAG00000030071 #32	ENSSHAG00000003731 #33	ENSSHAG00000002195 #33	ENSSHAG00000031091 #32	ENSSHAG00000024463 #32	ENSSHAG00000029874 #32	ENSSHAG00000000201 #32
Diprotodontia	ANCESTRAL SPECIES	80	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399.n #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546.j #24	ENSGT00940000161273 #27
Wallaby	MODERN SPECIES	9255																ENSMEUG00000006556 #22
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399.n #20	ENSGT00390000001724 #21	ENSGT00940000155042.b #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546.j #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000155173.x.a #32	ENSGT00940000155173.x.b #32	ENSGT00940000161441.a #33	ENSGT00940000161441.b.a.a #33	ENSGT00940000155173.w.a #32	ENSGT00940000155173.w.b #32	ENSGT00390000011196 #36
Common wonbat	MODERN SPECIES	1060	BTF3L4 (ENSVURG00010018442) #8	KTI12 (ENSVURG00010018437)	TXNDC12 (ENSVURG00010018423) #9	NRDC (ENSVURG00010018372) #11	OSBPL9 (ENSVURG00010018296) #12	ENSVURG00010018275	EPS15 (ENSVURG00010018256) #13	TTC39A (ENSVURG00010018213) #14	RNF11 (ENSVURG00010018204) #15	CDKN2C (ENSVURG00010018190) #17	FAF1 (ENSVURG00010018181) #18	DMRTA2 (ENSVURG00010018172) #19	ELAVL4 (ENSVURG00010017721) #20	ENSVURG00010017690	BEND5 (ENSVURG00010017683) #21	ENSVURG00010017676 #22	SPATA6 (ENSVURG00010017656) #23	SLC5A9 (ENSVURG00010017646) #24	TRABD2B (ENSVURG00010017643) #27	FOXD2 (ENSVURG00010017640)	ENSVURG00010017639	CMPK1 (ENSVURG00010017630)	STIL (ENSVURG00010017620) #28	TAL1 (ENSVURG00010017608) #29	PDZK1IP1 (ENSVURG00010017600) #30	ENSVURG00010017586 #32	ENSVURG00010017579 #32	ENSVURG00010017567 #33	ENSVURG00010017542 #33	ENSVURG00010017535	ENSVURG00010017522 #32
koala	DUPLICATION
koala	MODERN SPECIES	29	KTI12 (ENSPCIG00000031326)	TXNDC12 (ENSPCIG00000024201) #9	RAB3B (ENSPCIG00000024200) #10	NRDC (ENSPCIG00000024193) #11	OSBPL9 (ENSPCIG00000024185) #12	ENSPCIG00000030211	EPS15 (ENSPCIG00000030216) #13	TTC39A (ENSPCIG00000006797) #14	RNF11 (ENSPCIG00000017406) #15	CDKN2C (ENSPCIG00000001502) #17	FAF1 (ENSPCIG00000001340) #18	DMRTA2 (ENSPCIG00000030921) #19	ELAVL4 (ENSPCIG00000032142) #20	ENSPCIG00000033716 #22	BEND5 (ENSPCIG00000004124) #21	ENSPCIG00000012506 #22	SPATA6 (ENSPCIG00000004132) #23	SLC5A9 (ENSPCIG00000019164) #24	TRABD2B (ENSPCIG00000036779) #27	FOXD2 (ENSPCIG00000024785)	ENSPCIG00000016604	ENSPCIG00000016606	STIL (ENSPCIG00000006238) #28	TAL1 (ENSPCIG00000033850) #29	PDZK1IP1 (ENSPCIG00000006233) #30	ENSPCIG00000006228 #32	ENSPCIG00000026491 #33	ENSPCIG00000026492 #33	ENSPCIG00000036724 #33	ENSPCIG00000026493 #32	ENSPCIG00000026495 #32
koala	MODERN SPECIES	29	ZFYVE9 (ENSPCIG00000024205) #7	ENSPCIG00000024202 #8	KTI12 (ENSPCIG00000031326)	TXNDC12 (ENSPCIG00000024201) #9	RAB3B (ENSPCIG00000024200) #10	NRDC (ENSPCIG00000024193) #11	OSBPL9 (ENSPCIG00000024185) #12	ENSPCIG00000030211	EPS15 (ENSPCIG00000030216) #13	TTC39A (ENSPCIG00000006797) #14	RNF11 (ENSPCIG00000017406) #15	CDKN2C (ENSPCIG00000001502) #17	FAF1 (ENSPCIG00000001340) #18	DMRTA2 (ENSPCIG00000030921) #19	ELAVL4 (ENSPCIG00000032142) #20	ENSPCIG00000033716 #22	BEND5 (ENSPCIG00000004124) #21	ENSPCIG00000012506 #22	SPATA6 (ENSPCIG00000004132) #23	SLC5A9 (ENSPCIG00000019164) #24	TRABD2B (ENSPCIG00000036779) #27	FOXD2 (ENSPCIG00000024785)	ENSPCIG00000016604	ENSPCIG00000016606	STIL (ENSPCIG00000006238) #28	TAL1 (ENSPCIG00000033850) #29	PDZK1IP1 (ENSPCIG00000006233) #30	ENSPCIG00000006228 #32	ENSPCIG00000026491 #33	ENSPCIG00000026492 #33	ENSPCIG00000036724 #33
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	7	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c	ENSGT00390000011196 #36
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a.c	ENSGT00940000161527.d.b.b	ENSGT00940000161527.c
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT01030000234712.a	ENSGT00940000163630.Q.e.a	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a.d	ENSGT00940000161527.c	ENSGT00390000011196 #36	ENSGT00960000192856
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724.d #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196 #36	ENSGT00960000192856	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	2	RAB3B (ENSNNAG00000011777) #10	ENSNNAG00000011679 #11	OSBPL9 (ENSNNAG00000011517) #12	ENSNNAG00000011439	EPS15 (ENSNNAG00000011248) #13	TTC39A (ENSNNAG00000011153) #14	RNF11 (ENSNNAG00000011128) #15	CDKN2C (ENSNNAG00000011113) #17	ENSNNAG00000011091	ENSNNAG00000011066	FAF1 (ENSNNAG00000010998) #18	DMRTA2 (ENSNNAG00000010977) #19	ELAVL4 (ENSNNAG00000010818) #20	ENSNNAG00000010783 #22	BEND5 (ENSNNAG00000010746) #21	ENSNNAG00000010704 #22	SPATA6 (ENSNNAG00000010665) #23	SLC5A9 (ENSNNAG00000010629) #24	TRABD2B (ENSNNAG00000010576) #27	FOXD2 (ENSNNAG00000010546)	ENSNNAG00000010525	CMPK1 (ENSNNAG00000010501)	STIL (ENSNNAG00000010456) #28	TAL1 (ENSNNAG00000010424) #29	ENSNNAG00000009996	ENSNNAG00000009903	EFCAB14 (ENSNNAG00000009832) #36	ENSNNAG00000009790	ATPAF1 (ENSNNAG00000009764)	MOB3C (ENSNNAG00000009741)	ENSNNAG00000009684
Indian cobra	MODERN SPECIES	2	BTF3L4 (ENSNNAG00000011810) #8	TXNDC12 (ENSNNAG00000011791) #9	RAB3B (ENSNNAG00000011777) #10	ENSNNAG00000011679 #11	OSBPL9 (ENSNNAG00000011517) #12	ENSNNAG00000011439	EPS15 (ENSNNAG00000011248) #13	TTC39A (ENSNNAG00000011153) #14	RNF11 (ENSNNAG00000011128) #15	CDKN2C (ENSNNAG00000011113) #17	ENSNNAG00000011091	ENSNNAG00000011066	FAF1 (ENSNNAG00000010998) #18	DMRTA2 (ENSNNAG00000010977) #19	ELAVL4 (ENSNNAG00000010818) #20	ENSNNAG00000010783 #22	BEND5 (ENSNNAG00000010746) #21	ENSNNAG00000010704 #22	SPATA6 (ENSNNAG00000010665) #23	SLC5A9 (ENSNNAG00000010629) #24	TRABD2B (ENSNNAG00000010576) #27	FOXD2 (ENSNNAG00000010546)	ENSNNAG00000010525	CMPK1 (ENSNNAG00000010501)	STIL (ENSNNAG00000010456) #28	TAL1 (ENSNNAG00000010424) #29	ENSNNAG00000009996	ENSNNAG00000009903	EFCAB14 (ENSNNAG00000009832) #36	ENSNNAG00000009790	ATPAF1 (ENSNNAG00000009764)
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724.d #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196 #36	ENSGT00960000192856	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724.d #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00980000201417	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196 #36	ENSGT00960000192856	ENSGT00390000012765
Eastern brown snake	MODERN SPECIES	34	TXNDC12 (ENSPTXG00000001903) #9	RAB3B (ENSPTXG00000001902) #10	ENSPTXG00000001900 #11	OSBPL9 (ENSPTXG00000001894) #12	ENSPTXG00000001890	EPS15 (ENSPTXG00000001884) #13	TTC39A (ENSPTXG00000001883) #14	RNF11 (ENSPTXG00000001882) #15	CDKN2C (ENSPTXG00000001881) #17	FAF1 (ENSPTXG00000001880) #18	DMRTA2 (ENSPTXG00000001879) #19	ENSPTXG00000001878	ELAVL4 (ENSPTXG00000001627) #20	ENSPTXG00000001605	BEND5 (ENSPTXG00000001603) #21	AGBL4 (ENSPTXG00000001598) #22	SPATA6 (ENSPTXG00000001592) #23	SLC5A9 (ENSPTXG00000001588) #24	TRABD2B (ENSPTXG00000001584) #27	FOXD2 (ENSPTXG00000001582)	ENSPTXG00000001580	ENSPTXG00000001577	STIL (ENSPTXG00000001553) #28	ENSPTXG00000001547 #29	ENSPTXG00000001545	ENSPTXG00000001532	ENSPTXG00000001527	EFCAB14 (ENSPTXG00000001523) #36	ENSPTXG00000001516	ATPAF1 (ENSPTXG00000001511)	MOB3C (ENSPTXG00000001507)
Mainland tiger snake	MODERN SPECIES	13	ZFYVE9 (ENSNSUG00000018187) #7	BTF3L4 (ENSNSUG00000018186) #8	TXNDC12 (ENSNSUG00000018185) #9	RAB3B (ENSNSUG00000018184) #10	ENSNSUG00000017629 #11	OSBPL9 (ENSNSUG00000016390) #12	ENSNSUG00000016329	EPS15 (ENSNSUG00000016327) #13	TTC39A (ENSNSUG00000016326) #14	CDKN2C (ENSNSUG00000016325) #17	FAF1 (ENSNSUG00000016324) #18	DMRTA2 (ENSNSUG00000016323) #19	ELAVL4 (ENSNSUG00000016302) #20	ENSNSUG00000016301 #22	BEND5 (ENSNSUG00000016300) #21	ENSNSUG00000016299 #22	SPATA6 (ENSNSUG00000016298) #23	SLC5A9 (ENSNSUG00000016192) #24	TRABD2B (ENSNSUG00000016185) #27	FOXD2 (ENSNSUG00000016181)	ENSNSUG00000016180	CMPK1 (ENSNSUG00000016179)	STIL (ENSNSUG00000016176) #28	TAL1 (ENSNSUG00000016175) #29	ENSNSUG00000016174	ENSNSUG00000016173	ENSNSUG00000016172	EFCAB14 (ENSNSUG00000016171) #36	ENSNSUG00000016170	ATPAF1 (ENSNSUG00000016169)	MOB3C (ENSNSUG00000016168)
Lizard	MODERN SPECIES	863																ENSACAG00000028425 #22	ENSACAG00000005675 #23	ENSACAG00000043550	ENSACAG00000044494	ENSACAG00000041750	ENSACAG00000005693 #24	ENSACAG00000005879	ENSACAG00000044679	ENSACAG00000043050	ENSACAG00000042624	TRABD2B (ENSACAG00000029091) #27	FOXD2 (ENSACAG00000005885)	ENSACAG00000009553	CMPK1 (ENSACAG00000040184)	STIL (ENSACAG00000005943) #28	TAL1 (ENSACAG00000005980) #29
Laterata	ANCESTRAL SPECIES	3	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a.c	ENSGT00940000161527.d.b.a.c	ENSGT00940000161527.d.b.b	ENSGT00940000161527.c	ENSGT00390000011196 #36
Common wall lizard	MODERN SPECIES	14	ENSPMRG00000005468 #11	OSBPL9 (ENSPMRG00000005493) #12	ENSPMRG00000005528	EPS15 (ENSPMRG00000005708) #13	TTC39A (ENSPMRG00000005792) #14	RNF11 (ENSPMRG00000005930) #15	CDKN2C (ENSPMRG00000005936) #17	FAF1 (ENSPMRG00000005947) #18	DMRTA2 (ENSPMRG00000005970) #19	ENSPMRG00000005978	ELAVL4 (ENSPMRG00000005996) #20	ENSPMRG00000006025 #22	ENSPMRG00000006039	ENSPMRG00000006044	BEND5 (ENSPMRG00000006049) #21	ENSPMRG00000006060 #22	SPATA6 (ENSPMRG00000006072) #23	ENSPMRG00000007706	SLC5A9 (ENSPMRG00000007711) #24	TRABD2B (ENSPMRG00000007718) #27	FOXD2 (ENSPMRG00000007722)	ENSPMRG00000007733	ENSPMRG00000007758	STIL (ENSPMRG00000007767) #28	TAL1 (ENSPMRG00000007774) #29	PDZK1IP1 (ENSPMRG00000007777) #30	ENSPMRG00000007789	ENSPMRG00000007850	ENSPMRG00000007855	ENSPMRG00000007867	ENSPMRG00000007869
Argentine black and white tegu	MODERN SPECIES	16	TXNDC12 (ENSSMRG00000018284) #9	RAB3B (ENSSMRG00000018285) #10	ENSSMRG00000018286 #11	OSBPL9 (ENSSMRG00000018287) #12	ENSSMRG00000018288	EPS15 (ENSSMRG00000018289) #13	RNF11 (ENSSMRG00000018290) #15	TTC39A (ENSSMRG00000018291) #14	CDKN2C (ENSSMRG00000018292) #17	FAF1 (ENSSMRG00000018293) #18	DMRTA2 (ENSSMRG00000018294) #19	ENSSMRG00000018296	ELAVL4 (ENSSMRG00000018298) #20	ENSSMRG00000018299 #22	BEND5 (ENSSMRG00000018300) #21	ENSSMRG00000018301 #22	SPATA6 (ENSSMRG00000018302) #23	ENSSMRG00000018303	SLC5A9 (ENSSMRG00000018304) #24	ENSSMRG00000018306	ENSSMRG00000018307	ENSSMRG00000018308	STIL (ENSSMRG00000018309) #28	TAL1 (ENSSMRG00000018311) #29	PDZK1IP1 (ENSSMRG00000018312) #30	ENSSMRG00000018313	ENSSMRG00000018315	ENSSMRG00000018331	EFCAB14 (ENSSMRG00000018332) #36	ATPAF1 (ENSSMRG00000018333)	MOB3C (ENSSMRG00000018334)
tuatara	MODERN SPECIES	1725	BTF3L4 (ENSSPUG00000013095) #8	TXNDC12 (ENSSPUG00000013056) #9	RAB3B (ENSSPUG00000013039) #10	ENSSPUG00000013001 #11	OSBPL9 (ENSSPUG00000012142) #12	ENSSPUG00000011884 #12	ENSSPUG00000011863	EPS15 (ENSSPUG00000011819) #13	TTC39A (ENSSPUG00000011783) #14	RNF11 (ENSSPUG00000011773) #15	CDKN2C (ENSSPUG00000011758) #17	FAF1 (ENSSPUG00000011732) #18	ELAVL4 (ENSSPUG00000011636) #20	ENSSPUG00000011621 #22	ENSSPUG00000011602 #21	ENSSPUG00000011592 #22	SPATA6 (ENSSPUG00000011583) #23	SLC5A9 (ENSSPUG00000011544) #24	FOXD2 (ENSSPUG00000011531)	ENSSPUG00000011518	ENSSPUG00000011504	STIL (ENSSPUG00000011248) #28	TAL1 (ENSSPUG00000011173) #29	CYP4B38 (ENSSPUG00000010929)	CYP4B37 (ENSSPUG00000010107)	CYP4B36 (ENSSPUG00000009899)	CYP4B35 (ENSSPUG00000009557) #33	CYP4B1 (ENSSPUG00000009405)	EFCAB14 (ENSSPUG00000009350) #36	ATPAF1 (ENSSPUG00000009006)	MOB3C (ENSSPUG00000008916)
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000161273 #27	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.b	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000016446 #37
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Emydidae	ANCESTRAL SPECIES	22	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000016446 #37	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	45										ENSTMTG00000004899 #17	ENSTMTG00000004990 #18	ENSTMTG00000005788 #19	ENSTMTG00000005832 #20	ENSTMTG00000006344 #22	ENSTMTG00000006380 #21	ENSTMTG00000006433 #22	ENSTMTG00000006448 #23	ENSTMTG00000006516 #24	ENSTMTG00000006952	ENSTMTG00000006961
Three-toed box turtle	MODERN SPECIES	46									ENSTMTG00000007006 #17	ENSTMTG00000007057 #18	ENSTMTG00000007877 #19	ENSTMTG00000007898 #20	ENSTMTG00000007902 #20	ENSTMTG00000007916 #22	ENSTMTG00000007936 #21	ENSTMTG00000008028 #22	ENSTMTG00000008048 #23	ENSTMTG00000008099 #24	ENSTMTG00000008578
painted turtle	MODERN SPECIES	698			RAB3B (ENSCPBG00000012333) #10	ENSCPBG00000010301 #11	OSBPL9 (ENSCPBG00000010097) #12	EPS15 (ENSCPBG00000010066) #13	TTC39A (ENSCPBG00000010051) #14	RNF11 (ENSCPBG00000010042) #15	CDKN2C (ENSCPBG00000010037) #17	FAF1 (ENSCPBG00000010024) #18	DMRTA2 (ENSCPBG00000010018) #19	ELAVL4 (ENSCPBG00000010017) #20	ENSCPBG00000010014	ENSCPBG00000010011 #22	BEND5 (ENSCPBG00000010006) #21	ENSCPBG00000009998 #22	SPATA6 (ENSCPBG00000009991) #23	SLC5A9 (ENSCPBG00000009981) #24	ENSCPBG00000009979	ENSCPBG00000009977	ENSCPBG00000009970	ENSCPBG00000009969	STIL (ENSCPBG00000009963) #28	TAL1 (ENSCPBG00000009956) #29	PDZK1IP1 (ENSCPBG00000009955) #30	ENSCPBG00000009909	ENSCPBG00000009792	ENSCPBG00000009551	ENSCPBG00000009505	ENSCPBG00000009470	ENSCPBG00000009449
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000016446 #37
Goode s thornscrub tortoise	MODERN SPECIES	22	ZFYVE9 (ENSGEVG00005015772) #7	BTF3L4 (ENSGEVG00005015799) #8	TXNDC12 (ENSGEVG00005015860) #9	RAB3B (ENSGEVG00005015931) #10	ENSGEVG00005015994 #11	OSBPL9 (ENSGEVG00005016164) #12	EPS15 (ENSGEVG00005016380) #13	TTC39A (ENSGEVG00005016642) #14	RNF11 (ENSGEVG00005017825) #15	CDKN2C (ENSGEVG00005017834) #17	FAF1 (ENSGEVG00005017857) #18	DMRTA2 (ENSGEVG00005017905) #19	ELAVL4 (ENSGEVG00005017971) #20	ENSGEVG00005018302 #22	BEND5 (ENSGEVG00005018332) #21	ENSGEVG00005018360 #22	SPATA6 (ENSGEVG00005018413) #23	SLC5A9 (ENSGEVG00005018452) #24	FOXD2 (ENSGEVG00005018509)	ENSGEVG00005018529	ENSGEVG00005018548	STIL (ENSGEVG00005018571) #28	TAL1 (ENSGEVG00005018730) #29	PDZK1IP1 (ENSGEVG00005018742) #30	ENSGEVG00005018800	ENSGEVG00005019175	ENSGEVG00005019318	ENSGEVG00005019451	EFCAB14 (ENSGEVG00005019524) #36	TEX38 (ENSGEVG00005019533) #37	ATPAF1 (ENSGEVG00005019541)
Abingdon island giant tortoise	MODERN SPECIES	469															BEND5 (ENSCABG00000009039) #21	ENSCABG00000009031 #22
Chinese turtle	MODERN SPECIES	1294	TXNDC12 (ENSPSIG00000009183) #9	ENSPSIG00000000608 #10	ENSPSIG00000009351 #10	ENSPSIG00000009906 #11	OSBPL9 (ENSPSIG00000014233) #12	EPS15 (ENSPSIG00000015754) #13	TTC39A (ENSPSIG00000017765) #14	RNF11 (ENSPSIG00000006280) #15	CDKN2C (ENSPSIG00000006283) #17	FAF1 (ENSPSIG00000006306) #18	ENSPSIG00000008525	ELAVL4 (ENSPSIG00000008545) #20	ENSPSIG00000000289	BEND5 (ENSPSIG00000008975) #21	ENSPSIG00000000294	ENSPSIG00000008990 #22	SPATA6 (ENSPSIG00000009039) #23	SLC5A9 (ENSPSIG00000009335) #24	ENSPSIG00000000298	ENSPSIG00000000303	ENSPSIG00000010057 #27	ENSPSIG00000010073	ENSPSIG00000010159	STIL (ENSPSIG00000010417) #28	TAL1 (ENSPSIG00000010614) #29	ENSPSIG00000010643	ENSPSIG00000012049
Archosauria	ANCESTRAL SPECIES	11	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Aves	ANCESTRAL SPECIES	7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Neognathae	ANCESTRAL SPECIES	8	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Golden eagle	MODERN SPECIES	3	ZFYVE9 (ENSACCG00020007605) #7	BTF3L4 (ENSACCG00020007446) #8	TXNDC12 (ENSACCG00020007281) #9	RAB3B (ENSACCG00020007161) #10	NRDC (ENSACCG00020006735) #11	OSBPL9 (ENSACCG00020005731) #12	EPS15 (ENSACCG00020005155) #13	TTC39A (ENSACCG00020003801) #14	RNF11 (ENSACCG00020002601) #15	CDKN2C (ENSACCG00020002458) #17	FAF1 (ENSACCG00020009672) #18	DMRTA2 (ENSACCG00020009658) #19	ELAVL4 (ENSACCG00020009639) #20	ENSACCG00020009618 #22	BEND5 (ENSACCG00020009603) #21	ENSACCG00020009573 #22	SPATA6 (ENSACCG00020009549) #23	ENSACCG00020009515	TRABD2B (ENSACCG00020009471) #27	FOXD2 (ENSACCG00020009458)	ENSACCG00020009444	ENSACCG00020009431	ENSACCG00020009428	STIL (ENSACCG00020009378) #28	TAL1 (ENSACCG00020009310) #29	PDZK1IP1 (ENSACCG00020009303) #30	ENSACCG00020009286	ENSACCG00020009272	EFCAB14 (ENSACCG00020009253) #36	ATPAF1 (ENSACCG00020009237)	MOB3C (ENSACCG00020009219)
Kakapo	MODERN SPECIES	25	ZFYVE9 (ENSSHBG00005008377) #7	BTF3L4 (ENSSHBG00005008362) #8	TXNDC12 (ENSSHBG00005008357) #9	RAB3B (ENSSHBG00005008352) #10	NRDC (ENSSHBG00005008330) #11	OSBPL9 (ENSSHBG00005007839) #12	EPS15 (ENSSHBG00005007582) #13	TTC39A (ENSSHBG00005007564) #14	RNF11 (ENSSHBG00005007556) #15	CDKN2C (ENSSHBG00005007538) #17	FAF1 (ENSSHBG00005007518) #18	DMRTA2 (ENSSHBG00005007507) #19	ELAVL4 (ENSSHBG00005007474) #20	ENSSHBG00005007432 #22	BEND5 (ENSSHBG00005007417) #21	ENSSHBG00005007400 #22	ENSSHBG00005007379 #23	ENSSHBG00005007361	ENSSHBG00005007346 #23	SLC5A9 (ENSSHBG00005007272) #24	TRABD2B (ENSSHBG00005007228) #27	FOXD2 (ENSSHBG00005007218)	ENSSHBG00005007192	ENSSHBG00005007170	STIL (ENSSHBG00005007114) #28	TAL1 (ENSSHBG00005007088) #29	PDZK1IP1 (ENSSHBG00005007075) #30	ENSSHBG00005006437	ENSSHBG00005006306	EFCAB14 (ENSSHBG00005006278) #36	ATPAF1 (ENSSHBG00005006246)
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Zebra finch	MODERN SPECIES	30	CC2D1B (ENSTGUG00000008952)	ZFYVE9 (ENSTGUG00000008916) #7	BTF3L4 (ENSTGUG00000027297) #8	TXNDC12 (ENSTGUG00000008899) #9	RAB3B (ENSTGUG00000008894) #10	NRDC (ENSTGUG00000008815) #11	OSBPL9 (ENSTGUG00000008771) #12	EPS15 (ENSTGUG00000008685) #13	TTC39A (ENSTGUG00000008658) #14	RNF11 (ENSTGUG00000022215) #15	CDKN2C (ENSTGUG00000026124) #17	FAF1 (ENSTGUG00000008610) #18	DMRTA2 (ENSTGUG00000028863) #19	ELAVL4 (ENSTGUG00000008597) #20	BEND5 (ENSTGUG00000008591) #21	AGBL4 (ENSTGUG00000008586) #22	SPATA6 (ENSTGUG00000025010) #23	SLC5A9 (ENSTGUG00000028559) #24	TRABD2B (ENSTGUG00000028844) #27	FOXD2 (ENSTGUG00000023676)	ENSTGUG00000023854	ENSTGUG00000008563	STIL (ENSTGUG00000008545) #28	TAL1 (ENSTGUG00000008542) #29	PDZK1IP1 (ENSTGUG00000008532) #30	ENSTGUG00000008524	ENSTGUG00000008418	EFCAB14 (ENSTGUG00000008408) #36	ENSTGUG00000019172	ATPAF1 (ENSTGUG00000008394)	MOB3C (ENSTGUG00000008386)
Common canary	MODERN SPECIES	9	CC2D1B (ENSSCAG00000005820)	ZFYVE9 (ENSSCAG00000005814) #7	BTF3L4 (ENSSCAG00000005810) #8	TXNDC12 (ENSSCAG00000005806) #9	RAB3B (ENSSCAG00000005800) #10	NRDC (ENSSCAG00000004323) #11	OSBPL9 (ENSSCAG00000003797) #12	EPS15 (ENSSCAG00000003714) #13	TTC39A (ENSSCAG00000003706) #14	ENSSCAG00000003699	CDKN2C (ENSSCAG00000003689) #17	FAF1 (ENSSCAG00000003680) #18	ELAVL4 (ENSSCAG00000003671) #20	ENSSCAG00000003665 #22	BEND5 (ENSSCAG00000003637) #21	ENSSCAG00000003625 #22	SPATA6 (ENSSCAG00000003616) #23	SLC5A9 (ENSSCAG00000003587) #24	TRABD2B (ENSSCAG00000003575) #27	FOXE1 (ENSSCAG00000003549)	ENSSCAG00000003547	STIL (ENSSCAG00000003537) #28	ENSSCAG00000003518 #29	PDZK1IP1 (ENSSCAG00000003514) #30	ENSSCAG00000003305	ENSSCAG00000003281	EFCAB14 (ENSSCAG00000003273) #36	ATPAF1 (ENSSCAG00000003265)	MOB3C (ENSSCAG00000003260)	ENSSCAG00000003252	TMEM275 (ENSSCAG00000003248)
Flycatcher	MODERN SPECIES	27	ZFYVE9 (ENSFALG00000005568) #7	BTF3L4 (ENSFALG00000023382) #8	TXNDC12 (ENSFALG00000027173) #9	RAB3B (ENSFALG00000005545) #10	NRDC (ENSFALG00000005499) #11	OSBPL9 (ENSFALG00000005477) #12	EPS15 (ENSFALG00000005442) #13	TTC39A (ENSFALG00000005395) #14	ENSFALG00000005378	CDKN2C (ENSFALG00000005371) #17	FAF1 (ENSFALG00000005360) #18	DMRTA2 (ENSFALG00000005353) #19	ELAVL4 (ENSFALG00000025747) #20	AGBL4 (ENSFALG00000025862) #22	BEND5 (ENSFALG00000005315) #21	ENSFALG00000005309 #22	SPATA6 (ENSFALG00000005303) #23	ENSFALG00000025840	SLC5A9 (ENSFALG00000005278) #24	TRABD2B (ENSFALG00000005263) #27	ENSFALG00000009291	ENSFALG00000025721	STIL (ENSFALG00000009298) #28	TAL1 (ENSFALG00000009303) #29	PDZK1IP1 (ENSFALG00000009311) #30	ENSFALG00000009327	ENSFALG00000009359	EFCAB14 (ENSFALG00000009363) #36	ATPAF1 (ENSFALG00000028925)	MOB3C (ENSFALG00000009374)	ENSFALG00000009378
Great tit	MODERN SPECIES	28	BTF3L4 (ENSPMJG00000001056) #8	KTI12 (ENSPMJG00000001054)	TXNDC12 (ENSPMJG00000001041) #9	RAB3B (ENSPMJG00000001022) #10	NRDC (ENSPMJG00000000992) #11	OSBPL9 (ENSPMJG00000000976) #12	EPS15 (ENSPMJG00000000916) #13	TTC39A (ENSPMJG00000000876) #14	RNF11 (ENSPMJG00000000863) #15	CDKN2C (ENSPMJG00000000777) #17	FAF1 (ENSPMJG00000000748) #18	DMRTA2 (ENSPMJG00000000744) #19	ELAVL4 (ENSPMJG00000000678) #20	ENSPMJG00000000668	BEND5 (ENSPMJG00000000641) #21	AGBL4 (ENSPMJG00000000580) #22	ENSPMJG00000000555	SPATA6 (ENSPMJG00000000488) #23	SLC5A9 (ENSPMJG00000000463) #24	TRABD2B (ENSPMJG00000000435) #27	FOXD2 (ENSPMJG00000000414)	FOXE1 (ENSPMJG00000000299)	ENSPMJG00000000275	STIL (ENSPMJG00000000254) #28	TAL1 (ENSPMJG00000000238) #29	PDZK1IP1 (ENSPMJG00000000226) #30	ENSPMJG00000000216	ENSPMJG00000000189	EFCAB14 (ENSPMJG00000000135) #36	ATPAF1 (ENSPMJG00000000092)	MOB3C (ENSPMJG00000000048)
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Duck	MODERN SPECIES	26	BTF3L4 (ENSAPLG00000009079) #8	TXNDC12 (ENSAPLG00000022816) #9	RAB3B (ENSAPLG00000004148) #10	ENSAPLG00000002870 #11	OSBPL9 (ENSAPLG00000001003) #12	EPS15 (ENSAPLG00000004292) #13	TTC39A (ENSAPLG00000003729) #14	RNF11 (ENSAPLG00000022113) #15	CDKN2C (ENSAPLG00000027339) #17	FAF1 (ENSAPLG00000002930) #18	DMRTA2 (ENSAPLG00000029740) #19	ELAVL4 (ENSAPLG00000030449) #20	ENSAPLG00000023647 #22	ENSAPLG00000018496	BEND5 (ENSAPLG00000008052) #21	ENSAPLG00000007966 #22	SPATA6 (ENSAPLG00000007793) #23	ENSAPLG00000020726	SLC5A9 (ENSAPLG00000007144) #24	ENSAPLG00000022301	TRABD2B (ENSAPLG00000007124) #27	ENSAPLG00000028912	ENSAPLG00000029939	STIL (ENSAPLG00000010138) #28	ENSAPLG00000009571	EFCAB14 (ENSAPLG00000026113) #36	ATPAF1 (ENSAPLG00000009308)	MOB3C (ENSAPLG00000009181)	ENSAPLG00000008479	TMEM275 (ENSAPLG00000018210)	DMBX1 (ENSAPLG00000008404)
Pink-footed goose	MODERN SPECIES	1	ZFYVE9 (ENSABRG00000007459) #7	BTF3L4 (ENSABRG00000008061) #8	TXNDC12 (ENSABRG00000008071) #9	RAB3B (ENSABRG00000008096) #10	ENSABRG00000008367 #11	OSBPL9 (ENSABRG00000011975) #12	EPS15 (ENSABRG00000014091) #13	TTC39A (ENSABRG00000015248) #14	RNF11 (ENSABRG00000015288) #15	CDKN2C (ENSABRG00000015292) #17	FAF1 (ENSABRG00000015320) #18	DMRTA2 (ENSABRG00000015596) #19	ELAVL4 (ENSABRG00000015613) #20	AGBL4 (ENSABRG00000015624) #22	BEND5 (ENSABRG00000015631) #21	ENSABRG00000015638 #22	SPATA6 (ENSABRG00000015644) #23	SLC5A9 (ENSABRG00000015750) #24	TRABD2B (ENSABRG00000016692) #27	ENSABRG00000016705	ENSABRG00000016710	STIL (ENSABRG00000016714) #28	TAL1 (ENSABRG00000016716) #29	PDZK1IP1 (ENSABRG00000016718) #30	ENSABRG00000016720	ENSABRG00000016721	EFCAB14 (ENSABRG00000016757) #36	ATPAF1 (ENSABRG00000016766)	MOB3C (ENSABRG00000016771)	ENSABRG00000016779	TMEM275 (ENSABRG00000016800)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690.hc.b #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a.b #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690.hc.b #12	ENSGT00940000154690.gc #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a.b #14	ENSGT00940000163721	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Chicken	MODERN SPECIES	37	BTF3L4 (ENSGALG00010024840) #8	TXNDC12 (ENSGALG00010024836) #9	RAB3B (ENSGALG00010024642) #10	OSBPL9 (ENSGALG00010027084) #12	NRDC (ENSGALG00010024623) #11	ENSGALG00010024599 #12	EPS15 (ENSGALG00010024596) #13	TTC39A (ENSGALG00010024588) #14	RNF11 (ENSGALG00010024551)	CDKN2C (ENSGALG00010024533) #17	FAF1 (ENSGALG00010024514) #18	DMRTA2 (ENSGALG00010022784) #19	ELAVL4 (ENSGALG00010022760) #20	ENSGALG00010024774	BEND5 (ENSGALG00010024659) #21	AGBL4 (ENSGALG00010027088) #22	ENSGALG00010024768	SPATA6 (ENSGALG00010024758) #23	SLC5A9 (ENSGALG00010024728) #24	TRABD2B (ENSGALG00010024695) #27	ENSGALG00010026936	CMPK1 (ENSGALG00010024686)	STIL (ENSGALG00010024669) #28	TAL1 (ENSGALG00010022991) #29	PDZK1IP1 (ENSGALG00010022948) #30	CYP4B7 (ENSGALG00010022917)	EFCAB14 (ENSGALG00010022874) #36	ATPAF1 (ENSGALG00010022867)	MOB3C (ENSGALG00010022860)	MKNK1 (ENSGALG00010023356)	DMBX1 (ENSGALG00010022675)
Japanese quail	MODERN SPECIES	26	CC2D1B (ENSCJPG00005011893)	ZFYVE9 (ENSCJPG00005011892) #7	BTF3L4 (ENSCJPG00005011891) #8	TXNDC12 (ENSCJPG00005011890) #9	RAB3B (ENSCJPG00005011888) #10	NRDC (ENSCJPG00005011887) #11	OSBPL9 (ENSCJPG00005011698) #12	EPS15 (ENSCJPG00005010459) #13	TTC39A (ENSCJPG00005010447) #14	RNF11 (ENSCJPG00005010446) #15	CDKN2C (ENSCJPG00005010445) #17	FAF1 (ENSCJPG00005010278) #18	DMRTA2 (ENSCJPG00005010277) #19	ELAVL4 (ENSCJPG00005010275) #20	BEND5 (ENSCJPG00005010274) #21	AGBL4 (ENSCJPG00005010272) #22	ENSCJPG00005010271	SPATA6 (ENSCJPG00005010270) #23	SLC5A9 (ENSCJPG00005010085) #24	TRABD2B (ENSCJPG00005010082) #27	FOXD2 (ENSCJPG00005010080)	ENSCJPG00005010079	ENSCJPG00005010078	STIL (ENSCJPG00005010077) #28	TAL1 (ENSCJPG00005010076) #29	ENSCJPG00005010075	ENSCJPG00005010074	EFCAB14 (ENSCJPG00005010073) #36	ATPAF1 (ENSCJPG00005010072)	MOB3C (ENSCJPG00005010071)	ENSCJPG00005010070
African ostrich	MODERN SPECIES	578															BEND5 (ENSSCUG00000012326) #21	AGBL4 (ENSSCUG00000012327) #22	SPATA6 (ENSSCUG00000012330) #23	SLC5A9 (ENSSCUG00000012331) #24	TRABD2B (ENSSCUG00000012332) #27	ENSSCUG00000012336	STIL (ENSSCUG00000012337) #28	TAL1 (ENSSCUG00000012338) #29	PDZK1IP1 (ENSSCUG00000012339) #30	ENSSCUG00000012340	ENSSCUG00000012342	EFCAB14 (ENSSCUG00000012343) #36	ATPAF1 (ENSSCUG00000012344)	MOB3C (ENSSCUG00000012345)	ENSSCUG00000012346	DMBX1 (ENSSCUG00000012347)	ENSSCUG00000012348
Australian saltwater crocodile	MODERN SPECIES	28	CC2D1B (ENSCPRG00005002551)	ZFYVE9 (ENSCPRG00005002533) #7	BTF3L4 (ENSCPRG00005002529) #8	TXNDC12 (ENSCPRG00005002525) #9	RAB3B (ENSCPRG00005002515) #10	ENSCPRG00005000992 #11	OSBPL9 (ENSCPRG00005000700) #12	EPS15 (ENSCPRG00005000597) #13	TTC39A (ENSCPRG00005000251) #14	ENSCPRG00005018102	CDKN2C (ENSCPRG00005018099) #17	FAF1 (ENSCPRG00005018094) #18	ELAVL4 (ENSCPRG00005018078) #20	ENSCPRG00005018070 #22	BEND5 (ENSCPRG00005018063) #21	ENSCPRG00005018057 #22	SPATA6 (ENSCPRG00005018049) #23	SLC5A9 (ENSCPRG00005018045) #24	TRABD2B (ENSCPRG00005018038) #27	ENSCPRG00005018033	STIL (ENSCPRG00005018027) #28	TAL1 (ENSCPRG00005018024) #29	ENSCPRG00005018022	ENSCPRG00005017986	ENSCPRG00005017973	EFCAB14 (ENSCPRG00005017964) #36	ENSCPRG00005017961	ATPAF1 (ENSCPRG00005017958)	MOB3C (ENSCPRG00005017953)	ENSCPRG00005017951	TMEM275 (ENSCPRG00005017950)
Sauria	ANCESTRAL SPECIES	7	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a.c
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT01030000234712.a	ENSGT00940000163630.Q.e.a	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a.d	ENSGT00940000161527.c
Lizard	MODERN SPECIES	3	BTF3L4 (ENSACAG00000038457) #8	TXNDC12 (ENSACAG00000008073) #9	RAB3B (ENSACAG00000043816) #10	ENSACAG00000007741 #11	OSBPL9 (ENSACAG00000007574) #12	ENSACAG00000022598	EPS15 (ENSACAG00000007433) #13	RNF11 (ENSACAG00000007410) #15	CDKN2C (ENSACAG00000039282) #17	FAF1 (ENSACAG00000007308) #18	DMRTA2 (ENSACAG00000007289) #19	ENSACAG00000042237	ELAVL4 (ENSACAG00000004527) #20	ENSACAG00000037944	ENSACAG00000043345	ENSACAG00000035349 #22	ENSACAG00000041940	ENSACAG00000034569	ENSACAG00000001833	ENSACAG00000034956	ENSACAG00000001870	ENSACAG00000001932	ENSACAG00000001951	ENSACAG00000029353	ENSACAG00000028412	ENSACAG00000001984	FAAH (ENSACAG00000002040)	NSUN4 (ENSACAG00000043184)	ENSACAG00000002194	LRRC41 (ENSACAG00000002210)	RAD54L (ENSACAG00000002312)
Elapidae	ANCESTRAL SPECIES	1	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724.d #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196 #36	ENSGT00960000192856
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724.d #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196 #36	ENSGT00960000192856
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724.d #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00980000201417	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196 #36
Mainland tiger snake	MODERN SPECIES	13	ORC1 (ENSNSUG00000018308)	CC2D1B (ENSNSUG00000018188)	ZFYVE9 (ENSNSUG00000018187) #7	BTF3L4 (ENSNSUG00000018186) #8	TXNDC12 (ENSNSUG00000018185) #9	RAB3B (ENSNSUG00000018184) #10	ENSNSUG00000017629 #11	OSBPL9 (ENSNSUG00000016390) #12	ENSNSUG00000016329	EPS15 (ENSNSUG00000016327) #13	TTC39A (ENSNSUG00000016326) #14	CDKN2C (ENSNSUG00000016325) #17	FAF1 (ENSNSUG00000016324) #18	DMRTA2 (ENSNSUG00000016323) #19	ELAVL4 (ENSNSUG00000016302) #20	ENSNSUG00000016301 #22	BEND5 (ENSNSUG00000016300) #21	ENSNSUG00000016299 #22	SPATA6 (ENSNSUG00000016298) #23	SLC5A9 (ENSNSUG00000016192) #24	TRABD2B (ENSNSUG00000016185) #27	FOXD2 (ENSNSUG00000016181)	ENSNSUG00000016180	CMPK1 (ENSNSUG00000016179)	STIL (ENSNSUG00000016176) #28	TAL1 (ENSNSUG00000016175) #29	ENSNSUG00000016174	ENSNSUG00000016173	ENSNSUG00000016172	EFCAB14 (ENSNSUG00000016171) #36	ENSNSUG00000016170
Laterata	ANCESTRAL SPECIES	3	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a.c	ENSGT00940000161527.d.b.a.c	ENSGT00940000161527.d.b.b
Argentine black and white tegu	MODERN SPECIES	16	ZFYVE9 (ENSSMRG00000018282) #7	ENSSMRG00000018283 #8	TXNDC12 (ENSSMRG00000018284) #9	RAB3B (ENSSMRG00000018285) #10	ENSSMRG00000018286 #11	OSBPL9 (ENSSMRG00000018287) #12	ENSSMRG00000018288	EPS15 (ENSSMRG00000018289) #13	RNF11 (ENSSMRG00000018290) #15	TTC39A (ENSSMRG00000018291) #14	CDKN2C (ENSSMRG00000018292) #17	FAF1 (ENSSMRG00000018293) #18	DMRTA2 (ENSSMRG00000018294) #19	ENSSMRG00000018296	ELAVL4 (ENSSMRG00000018298) #20	ENSSMRG00000018299 #22	BEND5 (ENSSMRG00000018300) #21	ENSSMRG00000018301 #22	SPATA6 (ENSSMRG00000018302) #23	ENSSMRG00000018303	SLC5A9 (ENSSMRG00000018304) #24	ENSSMRG00000018306	ENSSMRG00000018307	ENSSMRG00000018308	STIL (ENSSMRG00000018309) #28	TAL1 (ENSSMRG00000018311) #29	PDZK1IP1 (ENSSMRG00000018312) #30	ENSSMRG00000018313	ENSSMRG00000018315	ENSSMRG00000018331	EFCAB14 (ENSSMRG00000018332) #36
Common wall lizard	MODERN SPECIES	14	ZFYVE9 (ENSPMRG00000005429) #7	BTF3L4 (ENSPMRG00000005442) #8	TXNDC12 (ENSPMRG00000005450) #9	RAB3B (ENSPMRG00000005462) #10	ENSPMRG00000005468 #11	OSBPL9 (ENSPMRG00000005493) #12	ENSPMRG00000005528	EPS15 (ENSPMRG00000005708) #13	TTC39A (ENSPMRG00000005792) #14	RNF11 (ENSPMRG00000005930) #15	CDKN2C (ENSPMRG00000005936) #17	FAF1 (ENSPMRG00000005947) #18	DMRTA2 (ENSPMRG00000005970) #19	ENSPMRG00000005978	ELAVL4 (ENSPMRG00000005996) #20	ENSPMRG00000006025 #22	ENSPMRG00000006039	ENSPMRG00000006044	BEND5 (ENSPMRG00000006049) #21	ENSPMRG00000006060 #22	SPATA6 (ENSPMRG00000006072) #23	ENSPMRG00000007706	SLC5A9 (ENSPMRG00000007711) #24	TRABD2B (ENSPMRG00000007718) #27	FOXD2 (ENSPMRG00000007722)	ENSPMRG00000007733	ENSPMRG00000007758	STIL (ENSPMRG00000007767) #28	TAL1 (ENSPMRG00000007774) #29	PDZK1IP1 (ENSPMRG00000007777) #30	ENSPMRG00000007789
tuatara	MODERN SPECIES	1725	CC2D1B (ENSSPUG00000013186)	ZFYVE9 (ENSSPUG00000013150) #7	BTF3L4 (ENSSPUG00000013095) #8	TXNDC12 (ENSSPUG00000013056) #9	RAB3B (ENSSPUG00000013039) #10	ENSSPUG00000013001 #11	OSBPL9 (ENSSPUG00000012142) #12	ENSSPUG00000011884 #12	ENSSPUG00000011863	EPS15 (ENSSPUG00000011819) #13	TTC39A (ENSSPUG00000011783) #14	RNF11 (ENSSPUG00000011773) #15	CDKN2C (ENSSPUG00000011758) #17	FAF1 (ENSSPUG00000011732) #18	ELAVL4 (ENSSPUG00000011636) #20	ENSSPUG00000011621 #22	ENSSPUG00000011602 #21	ENSSPUG00000011592 #22	SPATA6 (ENSSPUG00000011583) #23	SLC5A9 (ENSSPUG00000011544) #24	FOXD2 (ENSSPUG00000011531)	ENSSPUG00000011518	ENSSPUG00000011504	STIL (ENSSPUG00000011248) #28	TAL1 (ENSSPUG00000011173) #29	CYP4B38 (ENSSPUG00000010929)	CYP4B37 (ENSSPUG00000010107)	CYP4B36 (ENSSPUG00000009899)	CYP4B35 (ENSSPUG00000009557) #33	CYP4B1 (ENSSPUG00000009405)	EFCAB14 (ENSSPUG00000009350) #36
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000161273 #27	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.b	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c.f
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e
Goode s thornscrub tortoise	MODERN SPECIES	22	ORC1 (ENSGEVG00005015593)	CC2D1B (ENSGEVG00005015662)	ZFYVE9 (ENSGEVG00005015772) #7	BTF3L4 (ENSGEVG00005015799) #8	TXNDC12 (ENSGEVG00005015860) #9	RAB3B (ENSGEVG00005015931) #10	ENSGEVG00005015994 #11	OSBPL9 (ENSGEVG00005016164) #12	EPS15 (ENSGEVG00005016380) #13	TTC39A (ENSGEVG00005016642) #14	RNF11 (ENSGEVG00005017825) #15	CDKN2C (ENSGEVG00005017834) #17	FAF1 (ENSGEVG00005017857) #18	DMRTA2 (ENSGEVG00005017905) #19	ELAVL4 (ENSGEVG00005017971) #20	ENSGEVG00005018302 #22	BEND5 (ENSGEVG00005018332) #21	ENSGEVG00005018360 #22	SPATA6 (ENSGEVG00005018413) #23	SLC5A9 (ENSGEVG00005018452) #24	FOXD2 (ENSGEVG00005018509)	ENSGEVG00005018529	ENSGEVG00005018548	STIL (ENSGEVG00005018571) #28	TAL1 (ENSGEVG00005018730) #29	PDZK1IP1 (ENSGEVG00005018742) #30	ENSGEVG00005018800	ENSGEVG00005019175	ENSGEVG00005019318	ENSGEVG00005019451	EFCAB14 (ENSGEVG00005019524) #36
Abingdon island giant tortoise	MODERN SPECIES	2513															ELAVL4 (ENSCABG00000003809) #20	ENSCABG00000003804 #22
Emydidae	ANCESTRAL SPECIES	22	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441 #33	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000016446 #37
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	45												ENSTMTG00000004899 #17	ENSTMTG00000004990 #18	ENSTMTG00000005788 #19	ENSTMTG00000005832 #20	ENSTMTG00000006344 #22	ENSTMTG00000006380 #21	ENSTMTG00000006433 #22	ENSTMTG00000006448 #23	ENSTMTG00000006516 #24	ENSTMTG00000006952	ENSTMTG00000006961
Three-toed box turtle	MODERN SPECIES	46											ENSTMTG00000007006 #17	ENSTMTG00000007057 #18	ENSTMTG00000007877 #19	ENSTMTG00000007898 #20	ENSTMTG00000007902 #20	ENSTMTG00000007916 #22	ENSTMTG00000007936 #21	ENSTMTG00000008028 #22	ENSTMTG00000008048 #23	ENSTMTG00000008099 #24	ENSTMTG00000008578
painted turtle	MODERN SPECIES	698					RAB3B (ENSCPBG00000012333) #10	ENSCPBG00000010301 #11	OSBPL9 (ENSCPBG00000010097) #12	EPS15 (ENSCPBG00000010066) #13	TTC39A (ENSCPBG00000010051) #14	RNF11 (ENSCPBG00000010042) #15	CDKN2C (ENSCPBG00000010037) #17	FAF1 (ENSCPBG00000010024) #18	DMRTA2 (ENSCPBG00000010018) #19	ELAVL4 (ENSCPBG00000010017) #20	ENSCPBG00000010014	ENSCPBG00000010011 #22	BEND5 (ENSCPBG00000010006) #21	ENSCPBG00000009998 #22	SPATA6 (ENSCPBG00000009991) #23	SLC5A9 (ENSCPBG00000009981) #24	ENSCPBG00000009979	ENSCPBG00000009977	ENSCPBG00000009970	ENSCPBG00000009969	STIL (ENSCPBG00000009963) #28	TAL1 (ENSCPBG00000009956) #29	PDZK1IP1 (ENSCPBG00000009955) #30	ENSCPBG00000009909	ENSCPBG00000009792	ENSCPBG00000009551	ENSCPBG00000009505
Archosauria	ANCESTRAL SPECIES	11	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Aves	ANCESTRAL SPECIES	7	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Neognathae	ANCESTRAL SPECIES	8	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Anatidae	ANCESTRAL SPECIES	5	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765
Duck	MODERN SPECIES	26	PRPF38A (ENSAPLG00000005827)	ORC1 (ENSAPLG00000005106)	ZFYVE9 (ENSAPLG00000004605) #7	BTF3L4 (ENSAPLG00000009079) #8	TXNDC12 (ENSAPLG00000022816) #9	RAB3B (ENSAPLG00000004148) #10	ENSAPLG00000002870 #11	OSBPL9 (ENSAPLG00000001003) #12	EPS15 (ENSAPLG00000004292) #13	TTC39A (ENSAPLG00000003729) #14	RNF11 (ENSAPLG00000022113) #15	CDKN2C (ENSAPLG00000027339) #17	FAF1 (ENSAPLG00000002930) #18	DMRTA2 (ENSAPLG00000029740) #19	ELAVL4 (ENSAPLG00000030449) #20	ENSAPLG00000023647 #22	ENSAPLG00000018496	BEND5 (ENSAPLG00000008052) #21	ENSAPLG00000007966 #22	SPATA6 (ENSAPLG00000007793) #23	ENSAPLG00000020726	SLC5A9 (ENSAPLG00000007144) #24	ENSAPLG00000022301	TRABD2B (ENSAPLG00000007124) #27	ENSAPLG00000028912	ENSAPLG00000029939	STIL (ENSAPLG00000010138) #28	ENSAPLG00000009571	EFCAB14 (ENSAPLG00000026113) #36	ATPAF1 (ENSAPLG00000009308)	MOB3C (ENSAPLG00000009181)
Pink-footed goose	MODERN SPECIES	1	ORC1 (ENSABRG00000007186)	CC2D1B (ENSABRG00000007260)	ZFYVE9 (ENSABRG00000007459) #7	BTF3L4 (ENSABRG00000008061) #8	TXNDC12 (ENSABRG00000008071) #9	RAB3B (ENSABRG00000008096) #10	ENSABRG00000008367 #11	OSBPL9 (ENSABRG00000011975) #12	EPS15 (ENSABRG00000014091) #13	TTC39A (ENSABRG00000015248) #14	RNF11 (ENSABRG00000015288) #15	CDKN2C (ENSABRG00000015292) #17	FAF1 (ENSABRG00000015320) #18	DMRTA2 (ENSABRG00000015596) #19	ELAVL4 (ENSABRG00000015613) #20	AGBL4 (ENSABRG00000015624) #22	BEND5 (ENSABRG00000015631) #21	ENSABRG00000015638 #22	SPATA6 (ENSABRG00000015644) #23	SLC5A9 (ENSABRG00000015750) #24	TRABD2B (ENSABRG00000016692) #27	ENSABRG00000016705	ENSABRG00000016710	STIL (ENSABRG00000016714) #28	TAL1 (ENSABRG00000016716) #29	PDZK1IP1 (ENSABRG00000016718) #30	ENSABRG00000016720	ENSABRG00000016721	EFCAB14 (ENSABRG00000016757) #36	ATPAF1 (ENSABRG00000016766)	MOB3C (ENSABRG00000016771)
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000155042.b.d #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000155042.b.d #22
Turkey	MODERN SPECIES	1	ENSMGAG00000010722	ENSMGAG00000010730	ENSMGAG00000010732	ENSMGAG00000010747 #36	ENSMGAG00000010784	ENSMGAG00000010752	ENSMGAG00000010823 #29	ENSMGAG00000010795 #28	ENSMGAG00000010814	ENSMGAG00000010792	TRABD2B (ENSMGAG00000017913) #27	ENSMGAG00000021374 #23	ENSMGAG00000010829 #24	ENSMGAG00000010855 #23	ENSMGAG00000010874 #21	ENSMGAG00000019230 #22	ELAVL4 (ENSMGAG00000010928) #20	ENSMGAG00000010948 #18	ENSMGAG00000022627 #17	ENSMGAG00000010982 #14	ENSMGAG00000010980	ENSMGAG00000022271 #14	EPS15 (ENSMGAG00000010996) #13	ENSMGAG00000019881 #12	ENSMGAG00000011057 #11	ENSMGAG00000011030 #12	RAB3B (ENSMGAG00000018796) #10	ENSMGAG00000011090	ENSMGAG00000011102 #9	ENSMGAG00000018625	ENSMGAG00000011113 #8
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00390000002443	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00990000204056	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765
Common canary	MODERN SPECIES	9	PRPF38A (ENSSCAG00000005834)	ORC1 (ENSSCAG00000005826)	CC2D1B (ENSSCAG00000005820)	ZFYVE9 (ENSSCAG00000005814) #7	BTF3L4 (ENSSCAG00000005810) #8	TXNDC12 (ENSSCAG00000005806) #9	RAB3B (ENSSCAG00000005800) #10	NRDC (ENSSCAG00000004323) #11	OSBPL9 (ENSSCAG00000003797) #12	EPS15 (ENSSCAG00000003714) #13	TTC39A (ENSSCAG00000003706) #14	ENSSCAG00000003699	CDKN2C (ENSSCAG00000003689) #17	FAF1 (ENSSCAG00000003680) #18	ELAVL4 (ENSSCAG00000003671) #20	ENSSCAG00000003665 #22	BEND5 (ENSSCAG00000003637) #21	ENSSCAG00000003625 #22	SPATA6 (ENSSCAG00000003616) #23	SLC5A9 (ENSSCAG00000003587) #24	TRABD2B (ENSSCAG00000003575) #27	FOXE1 (ENSSCAG00000003549)	ENSSCAG00000003547	STIL (ENSSCAG00000003537) #28	ENSSCAG00000003518 #29	PDZK1IP1 (ENSSCAG00000003514) #30	ENSSCAG00000003305	ENSSCAG00000003281	EFCAB14 (ENSSCAG00000003273) #36	ATPAF1 (ENSSCAG00000003265)	MOB3C (ENSSCAG00000003260)
Flycatcher	MODERN SPECIES	27	ORC1 (ENSFALG00000005588)	CC2D1B (ENSFALG00000005577)	ZFYVE9 (ENSFALG00000005568) #7	BTF3L4 (ENSFALG00000023382) #8	TXNDC12 (ENSFALG00000027173) #9	RAB3B (ENSFALG00000005545) #10	NRDC (ENSFALG00000005499) #11	OSBPL9 (ENSFALG00000005477) #12	EPS15 (ENSFALG00000005442) #13	TTC39A (ENSFALG00000005395) #14	ENSFALG00000005378	CDKN2C (ENSFALG00000005371) #17	FAF1 (ENSFALG00000005360) #18	DMRTA2 (ENSFALG00000005353) #19	ELAVL4 (ENSFALG00000025747) #20	AGBL4 (ENSFALG00000025862) #22	BEND5 (ENSFALG00000005315) #21	ENSFALG00000005309 #22	SPATA6 (ENSFALG00000005303) #23	ENSFALG00000025840	SLC5A9 (ENSFALG00000005278) #24	TRABD2B (ENSFALG00000005263) #27	ENSFALG00000009291	ENSFALG00000025721	STIL (ENSFALG00000009298) #28	TAL1 (ENSFALG00000009303) #29	PDZK1IP1 (ENSFALG00000009311) #30	ENSFALG00000009327	ENSFALG00000009359	EFCAB14 (ENSFALG00000009363) #36	ATPAF1 (ENSFALG00000028925)
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00530000063498.B	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026.k.a.a #11	ENSGT00940000154690 #12	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b.d #22	ENSGT00390000001724 #21	ENSGT00940000155042.b.c #22	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196 #36	ENSGT00390000012765
Golden eagle	MODERN SPECIES	3	ORC1 (ENSACCG00020008273)	CC2D1B (ENSACCG00020007951)	ZFYVE9 (ENSACCG00020007605) #7	BTF3L4 (ENSACCG00020007446) #8	TXNDC12 (ENSACCG00020007281) #9	RAB3B (ENSACCG00020007161) #10	NRDC (ENSACCG00020006735) #11	OSBPL9 (ENSACCG00020005731) #12	EPS15 (ENSACCG00020005155) #13	TTC39A (ENSACCG00020003801) #14	RNF11 (ENSACCG00020002601) #15	CDKN2C (ENSACCG00020002458) #17	FAF1 (ENSACCG00020009672) #18	DMRTA2 (ENSACCG00020009658) #19	ELAVL4 (ENSACCG00020009639) #20	ENSACCG00020009618 #22	BEND5 (ENSACCG00020009603) #21	ENSACCG00020009573 #22	SPATA6 (ENSACCG00020009549) #23	ENSACCG00020009515	TRABD2B (ENSACCG00020009471) #27	FOXD2 (ENSACCG00020009458)	ENSACCG00020009444	ENSACCG00020009431	ENSACCG00020009428	STIL (ENSACCG00020009378) #28	TAL1 (ENSACCG00020009310) #29	PDZK1IP1 (ENSACCG00020009303) #30	ENSACCG00020009286	ENSACCG00020009272	EFCAB14 (ENSACCG00020009253) #36
Kakapo	MODERN SPECIES	25	ORC1 (ENSSHBG00005008482)	CC2D1B (ENSSHBG00005008448)	ZFYVE9 (ENSSHBG00005008377) #7	BTF3L4 (ENSSHBG00005008362) #8	TXNDC12 (ENSSHBG00005008357) #9	RAB3B (ENSSHBG00005008352) #10	NRDC (ENSSHBG00005008330) #11	OSBPL9 (ENSSHBG00005007839) #12	EPS15 (ENSSHBG00005007582) #13	TTC39A (ENSSHBG00005007564) #14	RNF11 (ENSSHBG00005007556) #15	CDKN2C (ENSSHBG00005007538) #17	FAF1 (ENSSHBG00005007518) #18	DMRTA2 (ENSSHBG00005007507) #19	ELAVL4 (ENSSHBG00005007474) #20	ENSSHBG00005007432 #22	BEND5 (ENSSHBG00005007417) #21	ENSSHBG00005007400 #22	ENSSHBG00005007379 #23	ENSSHBG00005007361	ENSSHBG00005007346 #23	SLC5A9 (ENSSHBG00005007272) #24	TRABD2B (ENSSHBG00005007228) #27	FOXD2 (ENSSHBG00005007218)	ENSSHBG00005007192	ENSSHBG00005007170	STIL (ENSSHBG00005007114) #28	TAL1 (ENSSHBG00005007088) #29	PDZK1IP1 (ENSSHBG00005007075) #30	ENSSHBG00005006437	ENSSHBG00005006306
Australian saltwater crocodile	MODERN SPECIES	28	PRPF38A (ENSCPRG00005002609)	ORC1 (ENSCPRG00005002601)	CC2D1B (ENSCPRG00005002551)	ZFYVE9 (ENSCPRG00005002533) #7	BTF3L4 (ENSCPRG00005002529) #8	TXNDC12 (ENSCPRG00005002525) #9	RAB3B (ENSCPRG00005002515) #10	ENSCPRG00005000992 #11	OSBPL9 (ENSCPRG00005000700) #12	EPS15 (ENSCPRG00005000597) #13	TTC39A (ENSCPRG00005000251) #14	ENSCPRG00005018102	CDKN2C (ENSCPRG00005018099) #17	FAF1 (ENSCPRG00005018094) #18	ELAVL4 (ENSCPRG00005018078) #20	ENSCPRG00005018070 #22	BEND5 (ENSCPRG00005018063) #21	ENSCPRG00005018057 #22	SPATA6 (ENSCPRG00005018049) #23	SLC5A9 (ENSCPRG00005018045) #24	TRABD2B (ENSCPRG00005018038) #27	ENSCPRG00005018033	STIL (ENSCPRG00005018027) #28	TAL1 (ENSCPRG00005018024) #29	ENSCPRG00005018022	ENSCPRG00005017986	ENSCPRG00005017973	EFCAB14 (ENSCPRG00005017964) #36	ENSCPRG00005017961	ATPAF1 (ENSCPRG00005017958)	MOB3C (ENSCPRG00005017953)
Anura	ANCESTRAL SPECIES	6	ENSGT00390000009595.a	ENSGT00940000154290.a #7	ENSGT00940000154296 #8	ENSGT00530000063273.a #9	ENSGT00940000159943 #10	ENSGT00940000155026 #11	ENSGT00940000154690 #12	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751 #13	ENSGT00950000182917.a.b.a #14	ENSGT00730000110988 #15	ENSGT00940000160194 #17	ENSGT00940000154831 #18	ENSGT00940000161649 #19	ENSGT00940000157399 #20	ENSGT00940000155042.b #22	ENSGT00390000001724 #21	ENSGT00940000175969	ENSGT00530000063821.b.a #23	ENSGT00940000157546 #24	ENSGT00940000161273 #27	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000160589	ENSGT00390000007310 #28	ENSGT00940000159889 #29	ENSGT00940000154660.b #30	ENSGT00940000161527.a.b.b	ENSGT00940000161527.b	ENSGT00940000161527.a.b.a	ENSGT00390000011196 #36
Leishan spiny toad	MODERN SPECIES	11	CC2D1B (ENSLLEG00000030657)	ZFYVE9 (ENSLLEG00000030631) #7	BTF3L4 (ENSLLEG00000030622) #8	TXNDC12 (ENSLLEG00000030607) #9	RAB3B (ENSLLEG00000030594) #10	NRDC (ENSLLEG00000030530) #11	OSBPL9 (ENSLLEG00000030207) #12	ENSLLEG00000030037	EPS15 (ENSLLEG00000029949) #13	TTC39A (ENSLLEG00000029871) #14	RNF11 (ENSLLEG00000029850) #15	CDKN2C (ENSLLEG00000029841) #17	ENSLLEG00000029835	DMRTA2 (ENSLLEG00000029483) #19	ELAVL4 (ENSLLEG00000029217) #20	ENSLLEG00000029175 #22	ENSLLEG00000029162	ENSLLEG00000029154	ENSLLEG00000029143	ENSLLEG00000029132	BEND5 (ENSLLEG00000029117) #21	ENSLLEG00000029098	ENSLLEG00000029090	SPATA6 (ENSLLEG00000029043) #23	ENSLLEG00000029040	ENSLLEG00000028872 #24	ENSLLEG00000028790 #24	ENSLLEG00000028776	TRABD2B (ENSLLEG00000028753) #27	FOXD2 (ENSLLEG00000028734)	ENSLLEG00000028721