Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES	320																ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Gnathostomata	ANCESTRAL SPECIES	171												ENSGT00940000161996	ENSGT00940000157440	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000158974	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B ##28	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00950000185272
Euteleostomi	ANCESTRAL SPECIES	40																ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00940000166277	ENSGT00940000171532	ENSGT00940000156462.B ##28	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000163794
Sarcopterygii	ANCESTRAL SPECIES	199		ENSGT00940000171532.a	ENSGT00940000156462.A ##28	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000163794	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000159677.c.a	ENSGT00940000159677.c.b.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000171532.a	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00950000185272	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Amniota	DUPLICATION
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000159677.c.a	ENSGT00940000159677.c.b.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Mammalia	ANCESTRAL SPECIES	7	ENSGT00940000160683	ENSGT00940000161997.a	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000159677.d	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Theria	ANCESTRAL SPECIES	65			ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000161996	ENSGT00940000157440	ENSGT00390000016151	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000159677.d	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Primates	ANCESTRAL SPECIES	13	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000159041 #10	ENSGT00940000157267.k #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000157267.l ##11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab.m #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.o #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000159041 #10	ENSGT00940000157267.k #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000157267.l ##11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab.m #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.o #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000157267.k #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162757.c #13	ENSGT00940000157267.l ##11	ENSGT00940000162757.d #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab.m #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.o #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267.k #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162757.d #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab.m #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.o #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Pan	ANCESTRAL SPECIES	12	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267.k #11	ENSGT00940000162757.d #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab.m #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.o #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Chimpanzee	MODERN SPECIES	15	INPP5D (ENSPTRG00000013050) #7	ATG16L1 (ENSPTRG00000013051) #8	SAG (ENSPTRG00000013052) #9	DGKD (ENSPTRG00000013053) #10	USP40 (ENSPTRG00000013054) #11	UGT1A3 (ENSPTRG00000013058) #12	ENSPTRG00000047621 #13	ENSPTRG00000044952 #14	MROH2A (ENSPTRG00000048059) #15	HJURP (ENSPTRG00000013062) #16	ENSPTRG00000048514 #17	TRPM8 (ENSPTRG00000013063) #18	SPP2 (ENSPTRG00000013064) #19	ARL4C (ENSPTRG00000013065) #20	SH3BP4 (ENSPTRG00000013066) #21	AGAP1 (ENSPTRG00000013067) #22	GBX2 (ENSPTRG00000013068) #23	ASB18 (ENSPTRG00000013069) #24	IQCA1 (ENSPTRG00000013070) #25	ACKR3 (ENSPTRG00000013071) #26	COPS8 (ENSPTRG00000049076) #27	COL6A3 (ENSPTRG00000013074) #28	MLPH (ENSPTRG00000013075) #29	PRLH (ENSPTRG00000045686) #30	RAB17 (ENSPTRG00000013076) #31	LRRFIP1 (ENSPTRG00000013077) #32	RBM44 (ENSPTRG00000013078) #33	RAMP1 (ENSPTRG00000013080) #34	UBE2F (ENSPTRG00000013081) #35	SCLY (ENSPTRG00000013082) #36	ESPNL (ENSPTRG00000048030) #37
Bonobo	MODERN SPECIES	15	NEU2 (ENSPPAG00000037902)	INPP5D (ENSPPAG00000030895) #7	ATG16L1 (ENSPPAG00000037037) #8	SAG (ENSPPAG00000016519) #9	DGKD (ENSPPAG00000044113) #10	USP40 (ENSPPAG00000044110) #11	UGT1A3 (ENSPPAG00000044118) #12	ENSPPAG00000044111 #15	HJURP (ENSPPAG00000037468) #16	ENSPPAG00000036893 #17	TRPM8 (ENSPPAG00000038881) #18	SPP2 (ENSPPAG00000030789) #19	ARL4C (ENSPPAG00000002191) #20	SH3BP4 (ENSPPAG00000043782) #21	ENSPPAG00000021065	AGAP1 (ENSPPAG00000036184) #22	IQCA1 (ENSPPAG00000029032) #25	ACKR3 (ENSPPAG00000013418) #26	COPS8 (ENSPPAG00000028390) #27	ENSPPAG00000038270 #28	MLPH (ENSPPAG00000042394) #29	PRLH (ENSPPAG00000041641) #30	RAB17 (ENSPPAG00000041650) #31	ENSPPAG00000027436 #32	ENSPPAG00000035768	RAMP1 (ENSPPAG00000035665) #34	UBE2F (ENSPPAG00000041279) #35	SCLY (ENSPPAG00000035663) #36	ESPNL (ENSPPAG00000036961) #37	ENSPPAG00000018534	KLHL30 (ENSPPAG00000042532)
Human	MODERN SPECIES	11	UGT1A8 (ENSG00000242366)	UGT1A10 (ENSG00000242515)	UGT1A9 (ENSG00000241119)	UGT1A7 (ENSG00000244122)	UGT1A6 (ENSG00000167165)	UGT1A5 (ENSG00000288705) #12	UGT1A4 (ENSG00000244474) #12	UGT1A3 (ENSG00000288702) #12	UGT1A1 (ENSG00000241635)	MROH2A (ENSG00000185038) #15	HJURP (ENSG00000123485) #16	TRPM8 (ENSG00000144481) #18	SPP2 (ENSG00000072080) #19	ARL4C (ENSG00000188042) #20	SH3BP4 (ENSG00000130147) #21	AGAP1 (ENSG00000157985) #22	GBX2 (ENSG00000168505) #23	ASB18 (ENSG00000182177) #24	IQCA1 (ENSG00000132321) #25	ACKR3 (ENSG00000144476) #26	COPS8 (ENSG00000198612) #27	COL6A3 (ENSG00000163359) #28	MLPH (ENSG00000115648) #29	PRLH (ENSG00000071677) #30	RAB17 (ENSG00000124839) #31	LRRFIP1 (ENSG00000124831) ##32	RBM44 (ENSG00000177483) #33	RAMP1 (ENSG00000132329) #34	UBE2F (ENSG00000184182) #35	SCLY (ENSG00000132330) #36	ESPNL (ENSG00000144488) #37
Gorilla	MODERN SPECIES	15	INPP5D (ENSGGOG00000000530) #7	ATG16L1 (ENSGGOG00000016433) #8	SAG (ENSGGOG00000011713) #9	ENSGGOG00000011507	DGKD (ENSGGOG00000000308) #10	USP40 (ENSGGOG00000034943) #11	ENSGGOG00000043725 ##11	UGT1A5 (ENSGGOG00000002604) #12	ENSGGOG00000043380 #14	MROH2A (ENSGGOG00000002606) #15	HJURP (ENSGGOG00000002621) #16	TRPM8 (ENSGGOG00000008375) #18	SPP2 (ENSGGOG00000006676) #19	ARL4C (ENSGGOG00000023462) #20	SH3BP4 (ENSGGOG00000013506) #21	ENSGGOG00000005512 #22	ENSGGOG00000036386	GBX2 (ENSGGOG00000005520) #23	ASB18 (ENSGGOG00000005521) #24	IQCA1 (ENSGGOG00000013083) #25	ACKR3 (ENSGGOG00000004275) #26	COPS8 (ENSGGOG00000036194) #27	COL6A3 (ENSGGOG00000002468) #28	MLPH (ENSGGOG00000015075) #29	PRLH (ENSGGOG00000015080) #30	RAB17 (ENSGGOG00000015083) #31	LRRFIP1 (ENSGGOG00000008411) #32	RBM44 (ENSGGOG00000012246) #33	RAMP1 (ENSGGOG00000003956) #34	UBE2F (ENSGGOG00000010709) #35	SCLY (ENSGGOG00000000090) #36
Orangutan	MODERN SPECIES	15	INPP5D (ENSPPYG00000013288) #7	ATG16L1 (ENSPPYG00000013289) #8	SAG (ENSPPYG00000013290) #9	DGKD (ENSPPYG00000013291) #10	USP40 (ENSPPYG00000013292) #11	UGT1A3 (ENSPPYG00000013293) #12	ENSPPYG00000037449 #14	MROH2A (ENSPPYG00000013295) #15	HJURP (ENSPPYG00000013296) #16	ENSPPYG00000037075 #17	TRPM8 (ENSPPYG00000013297) #18	SPP2 (ENSPPYG00000013298) #19	ARL4C (ENSPPYG00000036860) #20	SH3BP4 (ENSPPYG00000013300) #21	ENSPPYG00000041671	ENSPPYG00000013301 #22	GBX2 (ENSPPYG00000037858) #23	ASB18 (ENSPPYG00000035182) #24	IQCA1 (ENSPPYG00000013305) #25	ACKR3 (ENSPPYG00000013307) #26	COPS8 (ENSPPYG00000013308) #27	COL6A3 (ENSPPYG00000013309) #28	MLPH (ENSPPYG00000013310) #29	PRLH (ENSPPYG00000013311) #30	RAB17 (ENSPPYG00000013312) #31	ENSPPYG00000013313 #32	RBM44 (ENSPPYG00000031452) #33	RAMP1 (ENSPPYG00000030772) #34	UBE2F (ENSPPYG00000013315) #35	SCLY (ENSPPYG00000013316) #36	ESPNL (ENSPPYG00000013317) #37
Gibbon	MODERN SPECIES	14	NGEF (ENSNLEG00000014408)	NEU2 (ENSNLEG00000014420)	INPP5D (ENSNLEG00000008201) #7	ATG16L1 (ENSNLEG00000008221) #8	SAG (ENSNLEG00000008337) #9	DGKD (ENSNLEG00000008355) #10	ENSNLEG00000008375	UGT1A4 (ENSNLEG00000008395) #12	ENSNLEG00000033601 #14	ENSNLEG00000008474	HJURP (ENSNLEG00000008476) #16	ENSNLEG00000008495 #17	TRPM8 (ENSNLEG00000008497) #18	SPP2 (ENSNLEG00000008531) #19	SH3BP4 (ENSNLEG00000008547) #21	ENSNLEG00000010626 #22	GBX2 (ENSNLEG00000010647) #23	ASB18 (ENSNLEG00000010665) #24	IQCA1 (ENSNLEG00000010671) #25	ACKR3 (ENSNLEG00000010701) #26	ENSNLEG00000010706 #27	COL6A3 (ENSNLEG00000010790) #28	MLPH (ENSNLEG00000011006) #29	PRLH (ENSNLEG00000011050) #30	RAB17 (ENSNLEG00000011056) #31	ENSNLEG00000004742	ENSNLEG00000011097 #32	RBM44 (ENSNLEG00000011111) #33	RAMP1 (ENSNLEG00000011146) #34	UBE2F (ENSNLEG00000011152) #35	SCLY (ENSNLEG00000011190) #36
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00390000003140.A	ENSGT00940000160314	ENSGT00940000160138	ENSGT00910000146979	ENSGT00940000157702	ENSGT00390000009002	ENSGT00390000011962	ENSGT00940000154079.a	ENSGT00940000155091	ENSGT00950000182951.B	ENSGT00950000182888.a.a.b	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00390000005554	ENSGT01030000234614.B.b	ENSGT00940000154793.C.ab.n ##22	ENSGT00940000159902	ENSGT00940000159228	ENSGT00390000012166.o	ENSGT00430000032886	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00950000182869.e.a.b.sb.b.a.b.a	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT01100000263517.b.d.m.b.b	ENSGT00900000141021.a
Hominidae	ANCESTRAL SPECIES	6	ENSGT00390000003140.A	ENSGT00940000160314	ENSGT00940000160138	ENSGT00910000146979	ENSGT00940000157702	ENSGT00390000009002	ENSGT00390000011962	ENSGT00940000154079.a	ENSGT00940000155091	ENSGT00950000182951.B	ENSGT00950000182888.a.a.b	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00390000005554	ENSGT01030000234614.B.b	ENSGT00940000154793.C.ab.n ##22	ENSGT00940000159902	ENSGT00940000159228	ENSGT00390000012166.o	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00950000182869.e.a.b.sb.b.a.b.a	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT01100000263517.b.d.m.b.b	ENSGT00900000141021.a	ENSGT00940000155601
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000003140.A	ENSGT00940000160314	ENSGT00940000160138	ENSGT00910000146979	ENSGT00940000157702	ENSGT00390000009002	ENSGT00390000011962	ENSGT00940000154079.a	ENSGT00940000155091	ENSGT00950000182951.B	ENSGT00950000182888.a.a.b	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00390000005554	ENSGT01030000234614.B.b	ENSGT00940000154793.C.ab.n ##22	ENSGT00940000159902	ENSGT00940000159228	ENSGT00390000012166.o	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00950000182869.e.a.b.sb.b.a.b.a	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT01100000263517.b.d.m.b.b	ENSGT00900000141021.a	ENSGT00940000155601
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00390000003140.A	ENSGT00940000160314	ENSGT00940000160138	ENSGT00910000146979	ENSGT00940000157702	ENSGT00390000009002	ENSGT00390000011962	ENSGT00940000154079.a	ENSGT00940000155091	ENSGT00950000182951.B	ENSGT00950000182888.a.a.b	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00390000005554	ENSGT01030000234614.B.b	ENSGT00940000154793.C.ab.n ##22	ENSGT00940000159902	ENSGT00940000159228	ENSGT00390000012166.o	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00950000182869.e.a.b.sb.b.a.b.a	ENSGT00500000044895	ENSGT00390000013003	ENSGT00940000157639	ENSGT01100000263517.b.d.m.b.b	ENSGT00900000141021.a	ENSGT00940000155601
Pan	ANCESTRAL SPECIES		ENSGT00390000003140.A	ENSGT00940000160314	ENSGT00940000160138	ENSGT00910000146979	ENSGT00940000157702	ENSGT00390000009002	ENSGT00390000011962	ENSGT00940000154079.a	ENSGT00940000155091	ENSGT00950000182951.B	ENSGT00950000182888.a.a.b	ENSGT00940000153838.b	ENSGT00950000183081.a.a.a	ENSGT00390000005554	ENSGT01030000234614.B.b	ENSGT00940000154793.C.ab.n ##22	ENSGT00940000159902	ENSGT00940000159228	ENSGT00390000012166.o	ENSGT00390000012166.p	ENSGT00940000155130	ENSGT00940000159504	ENSGT00940000157906	ENSGT00940000157458	ENSGT00950000182869.e.a.b.sb.b.a.b.a	ENSGT00500000044895	ENSGT00390000013003	ENSGT00990000205747	ENSGT00940000157639	ENSGT01100000263517.b.d.m.b.b	ENSGT00900000141021.a
Chimpanzee	MODERN SPECIES		ASTN1 (ENSPTRG00000023115)	BRINP2 (ENSPTRG00000024127)	SEC16B (ENSPTRG00000042690)	RASAL2 (ENSPTRG00000001717)	ENSPTRG00000052709	CLEC20A (ENSPTRG00000050785)	TEX35 (ENSPTRG00000001720)	RALGPS2 (ENSPTRG00000001722)	ANGPTL1 (ENSPTRG00000001724)	FAM20B (ENSPTRG00000001725)	TOR3A (ENSPTRG00000001726)	ABL2 (ENSPTRG00000001727)	SOAT1 (ENSPTRG00000001728)	AXDND1 (ENSPTRG00000001729)	NPHS2 (ENSPTRG00000001731)	ENSPTRG00000043051 ##22	TDRD5 (ENSPTRG00000001732)	ENSPTRG00000049859	FAM163A (ENSPTRG00000041446)	TOR1AIP2 (ENSPTRG00000001734)	TOR1AIP1 (ENSPTRG00000001736)	CEP350 (ENSPTRG00000001738)	QSOX1 (ENSPTRG00000001739)	LHX4 (ENSPTRG00000001740)	ACBD6 (ENSPTRG00000001741)	ENSPTRG00000051293	XPR1 (ENSPTRG00000001743)	KIAA1614 (ENSPTRG00000001744)	ENSPTRG00000048595	STX6 (ENSPTRG00000033764)	MR1 (ENSPTRG00000001746)
Bonobo	MODERN SPECIES		PAPPA2 (ENSPPAG00000036025)	ASTN1 (ENSPPAG00000036233)	BRINP2 (ENSPPAG00000043526)	SEC16B (ENSPPAG00000042449)	RASAL2 (ENSPPAG00000043110)	ENSPPAG00000011200	TEX35 (ENSPPAG00000033252)	RALGPS2 (ENSPPAG00000027492)	ANGPTL1 (ENSPPAG00000029915)	FAM20B (ENSPPAG00000041041)	TOR3A (ENSPPAG00000035693)	ABL2 (ENSPPAG00000043803)	SOAT1 (ENSPPAG00000038722)	AXDND1 (ENSPPAG00000029513)	NPHS2 (ENSPPAG00000029304)	ENSPPAG00000028865 ##22	TDRD5 (ENSPPAG00000034442)	FAM163A (ENSPPAG00000035329)	TOR1AIP2 (ENSPPAG00000039236)	TOR1AIP1 (ENSPPAG00000027535)	CEP350 (ENSPPAG00000035440)	QSOX1 (ENSPPAG00000030296)	ENSPPAG00000034618	LHX4 (ENSPPAG00000043845)	ACBD6 (ENSPPAG00000043016)	ENSPPAG00000036003	XPR1 (ENSPPAG00000023632)	KIAA1614 (ENSPPAG00000041204)	ENSPPAG00000029107	STX6 (ENSPPAG00000042678)	MR1 (ENSPPAG00000019815)
Gibbon	MODERN SPECIES	2	ASTN1 (ENSNLEG00000015484)	BRINP2 (ENSNLEG00000015495)	SEC16B (ENSNLEG00000015508)	ENSNLEG00000034595	RASAL2 (ENSNLEG00000015510)	CLEC20A (ENSNLEG00000033644)	TEX35 (ENSNLEG00000015529)	ANGPTL1 (ENSNLEG00000015564)	RALGPS2 (ENSNLEG00000015544)	FAM20B (ENSNLEG00000029048)	TOR3A (ENSNLEG00000015587)	ABL2 (ENSNLEG00000015604)	SOAT1 (ENSNLEG00000015623)	AXDND1 (ENSNLEG00000015679)	NPHS2 (ENSNLEG00000015739)	ENSNLEG00000015748 ##22	TDRD5 (ENSNLEG00000015751)	FAM163A (ENSNLEG00000015804)	TOR1AIP2 (ENSNLEG00000015815)	ENSNLEG00000029703	TOR1AIP1 (ENSNLEG00000015827)	CEP350 (ENSNLEG00000015851)	QSOX1 (ENSNLEG00000015908)	ENSNLEG00000015953	ENSNLEG00000027446	ACBD6 (ENSNLEG00000015957)	XPR1 (ENSNLEG00000015979)	ENSNLEG00000016007	STX6 (ENSNLEG00000016021)	ENSNLEG00000016013	BTF3L4 (ENSNLEG00000016041)
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000162757.e.b.b #14	ENSGT00940000162976 #12	ENSGT00940000162757.e.a #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Rhinopithecus	ANCESTRAL SPECIES	45						ENSGT00940000162757.e.b.b #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.d #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Golden snub-nosed monkey	MODERN SPECIES	1152												SPP2 (ENSRROG00000028127) #19	ARL4C (ENSRROG00000029871) #20	SH3BP4 (ENSRROG00000031461) #21	ENSRROG00000034551	AGAP1 (ENSRROG00000036190) #22	GBX2 (ENSRROG00000035138) #23	ASB18 (ENSRROG00000011244) #24	IQCA1 (ENSRROG00000039851) #25
Black snub-nosed monkey	MODERN SPECIES	1007						ENSRBIG00000027870 #14	ENSRBIG00000038698 #14	UGT1A5 (ENSRBIG00000044273) #12	MROH2A (ENSRBIG00000041109) #15	HJURP (ENSRBIG00000037337) #16	ENSRBIG00000038620 #17	TRPM8 (ENSRBIG00000038917) #18	SPP2 (ENSRBIG00000044900) #19	SH3BP4 (ENSRBIG00000042776) #21	ENSRBIG00000033516	AGAP1 (ENSRBIG00000029245) #22	GBX2 (ENSRBIG00000033693) #23	ASB18 (ENSRBIG00000025110) #24	IQCA1 (ENSRBIG00000030471) #25	ACKR3 (ENSRBIG00000029465) #26	COPS8 (ENSRBIG00000042564) #27	COL6A3 (ENSRBIG00000036666) #28	MLPH (ENSRBIG00000024938) #29	PRLH (ENSRBIG00000039354) #30	ENSRBIG00000029451	RAB17 (ENSRBIG00000024090) #31	ENSRBIG00000041081 #32	RBM44 (ENSRBIG00000027703) #33	RAMP1 (ENSRBIG00000027122) #34
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000162757.e.b.b #14	ENSGT00940000162976 #12	ENSGT00940000162757.e.a #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Vervet Monkey	MODERN SPECIES	1	INPP5D (ENSCSAG00000006368) #7	ATG16L1 (ENSCSAG00000006363) #8	SAG (ENSCSAG00000006351) #9	DGKD (ENSCSAG00000006335) #10	USP40 (ENSCSAG00000006323) #11	ENSCSAG00000006311	UGT1A5 (ENSCSAG00000006310) #12	ENSCSAG00000006305 #14	MROH2A (ENSCSAG00000006299) #15	HJURP (ENSCSAG00000006286) #16	ENSCSAG00000018793	TRPM8 (ENSCSAG00000006269) #18	SPP2 (ENSCSAG00000006237) #19	ARL4C (ENSCSAG00000018795) #20	SH3BP4 (ENSCSAG00000006235) #21	AGAP1 (ENSCSAG00000006230) #22	ENSCSAG00000006225	GBX2 (ENSCSAG00000006222) #23	ASB18 (ENSCSAG00000006216) #24	IQCA1 (ENSCSAG00000006204) #25	ACKR3 (ENSCSAG00000018797) #26	ENSCSAG00000006174	COL6A3 (ENSCSAG00000006162) #28	ENSCSAG00000018799	MLPH (ENSCSAG00000006137) #29	PRLH (ENSCSAG00000006132) #30	RAB17 (ENSCSAG00000006115) #31	LRRFIP1 (ENSCSAG00000006108) ##32	RBM44 (ENSCSAG00000006098) #33	RAMP1 (ENSCSAG00000006090) #34	SCLY (ENSCSAG00000006088) #36
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757.e.a #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00910000147210	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35	ENSGT00940000157773 #36
Macaca	ANCESTRAL SPECIES	15	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757.e.a #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00910000147210	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35	ENSGT00940000157773 #36
Pig-tailed macaque	MODERN SPECIES	525	NEU2 (ENSMNEG00000028399)	INPP5D (ENSMNEG00000028451) #7	ATG16L1 (ENSMNEG00000030017) #8	SAG (ENSMNEG00000041266) #9	DGKD (ENSMNEG00000044349) #10	USP40 (ENSMNEG00000005725) #11	ENSMNEG00000040610 #14	UGT1A1 (ENSMNEG00000029757)	MROH2A (ENSMNEG00000007484) #15	HJURP (ENSMNEG00000040615) #16	TRPM8 (ENSMNEG00000035109) #18	SPP2 (ENSMNEG00000034902) #19	ARL4C (ENSMNEG00000031224) #20	SH3BP4 (ENSMNEG00000039881) #21	ENSMNEG00000037145	AGAP1 (ENSMNEG00000028819) #22	GBX2 (ENSMNEG00000036580) #23	ENSMNEG00000044531	ASB18 (ENSMNEG00000029927) #24	IQCA1 (ENSMNEG00000039533) #25	ACKR3 (ENSMNEG00000008100) #26	COPS8 (ENSMNEG00000044205) #27	ENSMNEG00000019117	COL6A3 (ENSMNEG00000036597) #28	MLPH (ENSMNEG00000032948) #29	PRLH (ENSMNEG00000028766) #30	RAB17 (ENSMNEG00000030785) #31	ENSMNEG00000034659 #32	RBM44 (ENSMNEG00000042905) #33	RAMP1 (ENSMNEG00000045433) #34	UBE2F (ENSMNEG00000034534) #35
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000166673.d.a.a.a.a.b	ENSGT00940000162757.f #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000161627.a.a.a.b.b.b.a.a.b.c.a.b	ENSGT01080000257484.C	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.a.a.b.a.a.a.a	ENSGT01100000263539.b.a.a.a.a.a.a.a.b.b.b.a.b.a.a.a	ENSGT00940000154793.C.`b.a ##22	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00910000147210	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35	ENSGT00940000157773 #36
Crab-eating macaque	MODERN SPECIES	3	UGT1A8 (ENSMFAG00000042349)	ENSMFAG00000056186	ENSMFAG00000039060 #14	MROH2A (ENSMFAG00000045490) #15	HJURP (ENSMFAG00000000886) #16	ENSMFAG00000050196 #17	TRPM8 (ENSMFAG00000043208) #18	SPP2 (ENSMFAG00000044433) #19	ENSMFAG00000062028	ENSMFAG00000049398	ENSMFAG00000045232 #20	SH3BP4 (ENSMFAG00000038422) #21	ENSMFAG00000062617	ENSMFAG00000056989	ENSMFAG00000050981 ##22	ENSMFAG00000038629 #22	GBX2 (ENSMFAG00000031863) #23	ASB18 (ENSMFAG00000042948) #24	IQCA1 (ENSMFAG00000046217) #25	ACKR3 (ENSMFAG00000029542) #26	COPS8 (ENSMFAG00000043944) #27	ENSMFAG00000030220	COL6A3 (ENSMFAG00000043048) #28	MLPH (ENSMFAG00000040090) #29	PRLH (ENSMFAG00000043339) #30	RAB17 (ENSMFAG00000036950) #31	ENSMFAG00000035972 #32	RBM44 (ENSMFAG00000002416) #33	RAMP1 (ENSMFAG00000032812) #34	ENSMFAG00000035899 #35	SCLY (ENSMFAG00000040528) #36
Rhesus	MODERN SPECIES	3	DGKD (ENSMMUG00000005646) #10	USP40 (ENSMMUG00000005650) #11	UGT1A1 (ENSMMUG00000021216)	ENSMMUG00000064188	MROH2A (ENSMMUG00000021219) #15	HJURP (ENSMMUG00000021221) #16	ENSMMUG00000060899 #17	TRPM8 (ENSMMUG00000046155) #18	SPP2 (ENSMMUG00000012173) #19	ENSMMUG00000056429	ENSMMUG00000054595	ARL4C (ENSMMUG00000011516) #20	SH3BP4 (ENSMMUG00000013808) #21	ENSMMUG00000064161	ENSMMUG00000050921	AGAP1 (ENSMMUG00000009346) #22	GBX2 (ENSMMUG00000005911) #23	IQCA1 (ENSMMUG00000017404) #25	ACKR3 (ENSMMUG00000060487) #26	COPS8 (ENSMMUG00000021605) #27	COL6A3 (ENSMMUG00000014049) #28	MLPH (ENSMMUG00000012089) #29	PRLH (ENSMMUG00000050714) #30	RAB17 (ENSMMUG00000012094) #31	LRRFIP1 (ENSMMUG00000003386) #32	RBM44 (ENSMMUG00000008908) #33	ENSMMUG00000063771	RAMP1 (ENSMMUG00000052071) #34	UBE2F (ENSMMUG00000018482) ##35	SCLY (ENSMMUG00000018483) #36	ESPNL (ENSMMUG00000018486) #37
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000162757.e.b.b #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00910000147210	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35	ENSGT00940000157773 #36
Olive baboon	MODERN SPECIES	1	ATG16L1 (ENSPANG00000024161) #8	SAG (ENSPANG00000008753) #9	DGKD (ENSPANG00000017057) #10	ENSPANG00000025666 #11	ENSPANG00000040648 #11	UGT1A4 (ENSPANG00000018059) #12	ENSPANG00000032206 #14	ENSPANG00000030852 #14	MROH2A (ENSPANG00000018452) #15	HJURP (ENSPANG00000015124) #16	TRPM8 (ENSPANG00000024755) #18	SPP2 (ENSPANG00000019534) #19	ARL4C (ENSPANG00000047505) #20	SH3BP4 (ENSPANG00000005413) #21	ENSPANG00000047269	AGAP1 (ENSPANG00000011986) #22	GBX2 (ENSPANG00000017536) #23	ASB18 (ENSPANG00000005054) #24	IQCA1 (ENSPANG00000014732) #25	ACKR3 (ENSPANG00000007800) #26	COPS8 (ENSPANG00000011780) #27	COL6A3 (ENSPANG00000006369) #28	MLPH (ENSPANG00000018132) #29	PRLH (ENSPANG00000005973) #30	ENSPANG00000041795	RAB17 (ENSPANG00000037034) #31	ENSPANG00000017841 #32	RBM44 (ENSPANG00000010319) #33	RAMP1 (ENSPANG00000051374) #34	UBE2F (ENSPANG00000005411) #35	SCLY (ENSPANG00000000673) #36
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757.e.a #14	ENSGT00940000162757.e.b.b #14	ENSGT00940000159677.d	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00910000147209	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00910000147210	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35	ENSGT00940000157773 #36
Sooty mangabey	MODERN SPECIES	107						ENSCATG00000042377 #14	ENSCATG00000042272 #14	UGT1A1 (ENSCATG00000000047)	MROH2A (ENSCATG00000029168) #15	HJURP (ENSCATG00000033953) #16	TRPM8 (ENSCATG00000032320) #18	SPP2 (ENSCATG00000024118) #19	ARL4C (ENSCATG00000041801) #20	SH3BP4 (ENSCATG00000036213) #21	ENSCATG00000035957	AGAP1 (ENSCATG00000029896) #22	GBX2 (ENSCATG00000034521) #23	ENSCATG00000040015	ASB18 (ENSCATG00000033942) #24	IQCA1 (ENSCATG00000008806) #25	ACKR3 (ENSCATG00000021636) #26	COPS8 (ENSCATG00000033600) #27	ENSCATG00000020622	COL6A3 (ENSCATG00000036982) #28	MLPH (ENSCATG00000044238) #29	PRLH (ENSCATG00000034916) #30	RAB17 (ENSCATG00000030578) #31	ENSCATG00000040003 #32	RBM44 (ENSCATG00000020323) #33	RAMP1 (ENSCATG00000038364) #34	ENSCATG00000028463 #35
Drill	MODERN SPECIES	784	ATG16L1 (ENSMLEG00000028574) #8	SAG (ENSMLEG00000037213) #9	DGKD (ENSMLEG00000043481) #10	USP40 (ENSMLEG00000033899) #11	UGT1A5 (ENSMLEG00000033333) #12	ENSMLEG00000029773 #14	ENSMLEG00000038711 #14	MROH2A (ENSMLEG00000043616) #15	HJURP (ENSMLEG00000040399) #16	ENSMLEG00000036363 #17	TRPM8 (ENSMLEG00000021173) #18	SPP2 (ENSMLEG00000037361) #19	ARL4C (ENSMLEG00000027620) #20	SH3BP4 (ENSMLEG00000037429) #21	ENSMLEG00000036559	AGAP1 (ENSMLEG00000034856) #22	ASB18 (ENSMLEG00000037239) #24	ENSMLEG00000036860	IQCA1 (ENSMLEG00000036394) #25	ACKR3 (ENSMLEG00000000234) #26	COPS8 (ENSMLEG00000036293) #27	ENSMLEG00000017370	COL6A3 (ENSMLEG00000030027) #28	MLPH (ENSMLEG00000034413) #29	PRLH (ENSMLEG00000040440) #30	RAB17 (ENSMLEG00000041001) #31	ENSMLEG00000038517 #32	RBM44 (ENSMLEG00000007850) #33	RAMP1 (ENSMLEG00000029626) #34	ENSMLEG00000033263 #35	SCLY (ENSMLEG00000037681) #36
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a.d #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.b.a ##35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Mas night monkey	MODERN SPECIES	940	NGEF (ENSANAG00000024538)	NEU2 (ENSANAG00000037129)	INPP5D (ENSANAG00000036916) #7	ATG16L1 (ENSANAG00000035256) #8	SAG (ENSANAG00000026665) #9	DGKD (ENSANAG00000033065) #10	USP40 (ENSANAG00000036897) #11	ENSANAG00000035564 #12	HJURP (ENSANAG00000026897) #16	ENSANAG00000026908 #17	TRPM8 (ENSANAG00000026214) #18	SPP2 (ENSANAG00000037484) #19	ARL4C (ENSANAG00000038361) #20	ENSANAG00000036206 #21	ENSANAG00000019899	AGAP1 (ENSANAG00000033262) #22	GBX2 (ENSANAG00000028606) #23	ASB18 (ENSANAG00000038140) #24	IQCA1 (ENSANAG00000014576) #25	ACKR3 (ENSANAG00000008341) #26	COPS8 (ENSANAG00000036385) #27	COL6A3 (ENSANAG00000020236) #28	MLPH (ENSANAG00000037808) #29	PRLH (ENSANAG00000030046) #30	ENSANAG00000037953 #31	ENSANAG00000021311 #32	RBM44 (ENSANAG00000037356) #33	RAMP1 (ENSANAG00000036130) #34
Cebidae	ANCESTRAL SPECIES	11	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a.d #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.b.a ##35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Marmoset	MODERN SPECIES	18	USP40 (ENSCJAG00000014074) #11	UGT1A1 (ENSCJAG00000014130)	ENSCJAG00000075786	HJURP (ENSCJAG00000014161) #16	ENSCJAG00000063077 #17	TRPM8 (ENSCJAG00000014167) #18	SPP2 (ENSCJAG00000071680) #19	ENSCJAG00000079474	ARL4C (ENSCJAG00000042179) #20	ENSCJAG00000072928	SH3BP4 (ENSCJAG00000014272) #21	ENSCJAG00000079787	ENSCJAG00000086812	ENSCJAG00000063144	ENSCJAG00000075736	AGAP1 (ENSCJAG00000004382) #22	GBX2 (ENSCJAG00000004419) #23	ASB18 (ENSCJAG00000004432) #24	IQCA1 (ENSCJAG00000004446) #25	ACKR3 (ENSCJAG00000022033) #26	COPS8 (ENSCJAG00000040503) #27	COL6A3 (ENSCJAG00000002226) #28	MLPH (ENSCJAG00000076633) #29	PRLH (ENSCJAG00000002208) #30	ENSCJAG00000076425 #31	ENSCJAG00000000491 #32	RBM44 (ENSCJAG00000000484) #33	RAMP1 (ENSCJAG00000086220) #34	ENSCJAG00000000476 ##35	SCLY (ENSCJAG00000000471) #36	ESPNL (ENSCJAG00000077549) #37
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a.d #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.b.a.b ##35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Bolivian squirrel monkey	MODERN SPECIES	128	INPP5D (ENSSBOG00000028279) #7	ATG16L1 (ENSSBOG00000024084) #8	ENSSBOG00000021489	SAG (ENSSBOG00000030092) #9	DGKD (ENSSBOG00000032101) #10	USP40 (ENSSBOG00000034189) #11	ENSSBOG00000030178 #12	ENSSBOG00000031447 #14	MROH2A (ENSSBOG00000018561) #15	HJURP (ENSSBOG00000019880) #16	ENSSBOG00000025162 #17	TRPM8 (ENSSBOG00000027957) #18	SPP2 (ENSSBOG00000032899) #19	ARL4C (ENSSBOG00000033162) #20	SH3BP4 (ENSSBOG00000034258) #21	AGAP1 (ENSSBOG00000033198) #22	ASB18 (ENSSBOG00000029537) #24	IQCA1 (ENSSBOG00000029838) #25	ACKR3 (ENSSBOG00000024133) #26	COPS8 (ENSSBOG00000031570) #27	COL6A3 (ENSSBOG00000029543) #28	MLPH (ENSSBOG00000031086) #29	PRLH (ENSSBOG00000032702) #30	RAB17 (ENSSBOG00000002460) #31	ENSSBOG00000021844 #32	RBM44 (ENSSBOG00000020250) #33	RAMP1 (ENSSBOG00000034673) #34	ENSSBOG00000020844 ##35	SCLY (ENSSBOG00000033368) #36	ESPNL (ENSSBOG00000028721) #37	ENSSBOG00000028703
Capuchin	MODERN SPECIES	106	NEU2 (ENSCCAG00000032487)	INPP5D (ENSCCAG00000019399) #7	ATG16L1 (ENSCCAG00000007793) #8	SAG (ENSCCAG00000019531) #9	DGKD (ENSCCAG00000031333) #10	USP40 (ENSCCAG00000026284) #11	ENSCCAG00000024565 #12	ENSCCAG00000033013 #14	MROH2A (ENSCCAG00000027970) #15	HJURP (ENSCCAG00000036106) #16	ENSCCAG00000026708 #17	TRPM8 (ENSCCAG00000022541) #18	SPP2 (ENSCCAG00000024513) #19	ARL4C (ENSCCAG00000024558) #20	SH3BP4 (ENSCCAG00000020741) #21	AGAP1 (ENSCCAG00000036651) #22	GBX2 (ENSCCAG00000031985) #23	ASB18 (ENSCCAG00000024264) #24	IQCA1 (ENSCCAG00000034378) #25	ACKR3 (ENSCCAG00000013268) #26	COPS8 (ENSCCAG00000036165) #27	COL6A3 (ENSCCAG00000037000) #28	MLPH (ENSCCAG00000024406) #29	PRLH (ENSCCAG00000022877) #30	RAB17 (ENSCCAG00000024584) #31	ENSCCAG00000003358 #32	RBM44 (ENSCCAG00000032705) #33	RAMP1 (ENSCCAG00000032734) #34	ENSCCAG00000004088 ##35	SCLY (ENSCCAG00000024192) #36	ESPNL (ENSCCAG00000030132) #37
Tarsier	MODERN SPECIES	3662																AGAP1 (ENSTSYG00000006629) #22	ASB18 (ENSTSYG00000027790) #24	IQCA1 (ENSTSYG00000004713) #25
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Lemuriformes_a	ANCESTRAL SPECIES	80							ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Coquerels sifaka	MODERN SPECIES	419									UGT1A1 (ENSPCOG00000021463)	MROH2A (ENSPCOG00000017544) #15	HJURP (ENSPCOG00000025953) #16	TRPM8 (ENSPCOG00000022642) #18	SPP2 (ENSPCOG00000007506) #19	ARL4C (ENSPCOG00000028187) #20	SH3BP4 (ENSPCOG00000001218) #21	AGAP1 (ENSPCOG00000018131) #22	GBX2 (ENSPCOG00000018530) #23	ASB18 (ENSPCOG00000021286) #24	IQCA1 (ENSPCOG00000014907) #25	ACKR3 (ENSPCOG00000003989) #26	COPS8 (ENSPCOG00000027995) #27	COL6A3 (ENSPCOG00000028385) #28	MLPH (ENSPCOG00000028337) #29	PRLH (ENSPCOG00000022175) #30	RAB17 (ENSPCOG00000016444) #31	LRRFIP1 (ENSPCOG00000024174) #32	RBM44 (ENSPCOG00000020553) #33	RAMP1 (ENSPCOG00000004479) #34	ENSPCOG00000004278 #35	SCLY (ENSPCOG00000028757) #36	ESPNL (ENSPCOG00000026475) #37
Greater bamboo lemur	MODERN SPECIES	196														ARL4C (ENSPSMG00000015570) #20	SH3BP4 (ENSPSMG00000015563) #21	AGAP1 (ENSPSMG00000015260) #22	GBX2 (ENSPSMG00000014982) #23	ASB18 (ENSPSMG00000014970) #24	IQCA1 (ENSPSMG00000014961) #25	ACKR3 (ENSPSMG00000014942) #26	COPS8 (ENSPSMG00000014918) #27	COL6A3 (ENSPSMG00000014666) #28	MLPH (ENSPSMG00000014212) #29	PRLH (ENSPSMG00000014161) #30	RAB17 (ENSPSMG00000014157) #31
Mouse lemur	MODERN SPECIES	30	NEU2 (ENSMICG00000037724)	INPP5D (ENSMICG00000006753) #7	ATG16L1 (ENSMICG00000010261) #8	SAG (ENSMICG00000010273) #9	DGKD (ENSMICG00000010285) #10	ENSMICG00000045220 #11	ENSMICG00000045171 #11	ENSMICG00000042700 #14	MROH2A (ENSMICG00000014627) #15	HJURP (ENSMICG00000014679) #16	TRPM8 (ENSMICG00000014693) #18	SPP2 (ENSMICG00000028114) #19	ARL4C (ENSMICG00000017503) #20	ENSMICG00000034713	SH3BP4 (ENSMICG00000004598) #21	AGAP1 (ENSMICG00000008660) #22	GBX2 (ENSMICG00000028176) #23	ASB18 (ENSMICG00000042020) #24	IQCA1 (ENSMICG00000008062) #25	ACKR3 (ENSMICG00000008095) #26	ENSMICG00000000206 #27	ENSMICG00000047235 #28	ENSMICG00000017470	RTP5 (ENSMICG00000045438)	PDCD1 (ENSMICG00000032951)	NEU4 (ENSMICG00000034826)	GAL3ST2 (ENSMICG00000016500)	D2HGDH (ENSMICG00000016497)	ING5 (ENSMICG00000028191)	DTYMK (ENSMICG00000013135)	ENSMICG00000042660
Bushbaby	MODERN SPECIES	248																AGAP1 (ENSOGAG00000005907) #22	GBX2 (ENSOGAG00000034320) #23	ASB18 (ENSOGAG00000027887) #24	IQCA1 (ENSOGAG00000005917) #25	ACKR3 (ENSOGAG00000027445) #26	COPS8 (ENSOGAG00000007872) #27	COL6A3 (ENSOGAG00000016050) #28	ENSOGAG00000032294	MLPH (ENSOGAG00000015356) #29	PRLH (ENSOGAG00000034435) #30	RAB17 (ENSOGAG00000012997) #31	LRRFIP1 (ENSOGAG00000013001) #32	RBM44 (ENSOGAG00000004247) #33	ENSOGAG00000004248 #34	UBE2F (ENSOGAG00000005308) #35	SCLY (ENSOGAG00000009623) #36
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Tree shrew	MODERN SPECIES	2822																AGAP1 (ENSTBEG00000015873) #22
Glires	ANCESTRAL SPECIES	14	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	320	ENSDORG00000026631	Neu2 (ENSDORG00000025920)	Inpp5d (ENSDORG00000015370) #7	Atg16l1 (ENSDORG00000000191) #8	Sag (ENSDORG00000000192) #9	Dgkd (ENSDORG00000013135) #10	ENSDORG00000026319 #11	ENSDORG00000007480	ENSDORG00000024133 #14	ENSDORG00000029743 #14	Mroh2a (ENSDORG00000007483) #15	Trpm8 (ENSDORG00000001000) #18	Spp2 (ENSDORG00000025268) #19	Arl4c (ENSDORG00000028955) #20	Sh3bp4 (ENSDORG00000008492) #21	ENSDORG00000028590 #22	ENSDORG00000005374 #22	Gbx2 (ENSDORG00000026040) #23	Iqca (ENSDORG00000014321) #25	Ackr3 (ENSDORG00000007573) #26	ENSDORG00000013459 #27	Col6a3 (ENSDORG00000016705) #28	Mlph (ENSDORG00000011783) #29	Prlh (ENSDORG00000015671) #30	Rab17 (ENSDORG00000028745) #31	ENSDORG00000013588 #32	Ramp1 (ENSDORG00000024593) #34	Ube2f (ENSDORG00000009774) #35	Scly (ENSDORG00000013372) #36	Espnl (ENSDORG00000013375) #37	Klhl30 (ENSDORG00000013380)
Kangaroo rat	MODERN SPECIES	320	Neu2 (ENSDORG00000025920)	Inpp5d (ENSDORG00000015370) #7	Atg16l1 (ENSDORG00000000191) #8	Sag (ENSDORG00000000192) #9	Dgkd (ENSDORG00000013135) #10	ENSDORG00000026319 #11	ENSDORG00000007480	ENSDORG00000024133 #14	ENSDORG00000029743 #14	Mroh2a (ENSDORG00000007483) #15	Trpm8 (ENSDORG00000001000) #18	Spp2 (ENSDORG00000025268) #19	Arl4c (ENSDORG00000028955) #20	Sh3bp4 (ENSDORG00000008492) #21	ENSDORG00000028590 #22	ENSDORG00000005374 #22	Gbx2 (ENSDORG00000026040) #23	Iqca (ENSDORG00000014321) #25	Ackr3 (ENSDORG00000007573) #26	ENSDORG00000013459 #27	Col6a3 (ENSDORG00000016705) #28	Mlph (ENSDORG00000011783) #29	Prlh (ENSDORG00000015671) #30	Rab17 (ENSDORG00000028745) #31	ENSDORG00000013588 #32	Ramp1 (ENSDORG00000024593) #34	Ube2f (ENSDORG00000009774) #35	Scly (ENSDORG00000013372) #36	Espnl (ENSDORG00000013375) #37	Klhl30 (ENSDORG00000013380)	Ilkap (ENSDORG00000008921)
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764.b	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Muroidea	ANCESTRAL SPECIES	20	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764.b	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a.h #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764.b	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a.h #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Golden Hamster	MODERN SPECIES	741	Snorc (ENSMAUG00000019733)	ENSMAUG00000016226	Neu2 (ENSMAUG00000011638)	Inpp5d (ENSMAUG00000007862) #7	Atg16l1 (ENSMAUG00000000887) #8	Sag (ENSMAUG00000009306) #9	ENSMAUG00000013820 #10	ENSMAUG00000018423 #11	Dnajb3 (ENSMAUG00000006882) #14	Ugt1a1 (ENSMAUG00000003905)	Mroh2a (ENSMAUG00000019179) #15	Hjurp (ENSMAUG00000017670) #16	ENSMAUG00000020036 #18	Spp2 (ENSMAUG00000019000) #19	Sh3bp4 (ENSMAUG00000015955) #21	Agap1 (ENSMAUG00000013197) #22	Gbx2 (ENSMAUG00000021102) #23	Asb18 (ENSMAUG00000011343) #24	Iqca (ENSMAUG00000012478) #25	Ackr3 (ENSMAUG00000001290) #26	Cops8 (ENSMAUG00000016566) #27	Col6a3 (ENSMAUG00000018474) #28	Mlph (ENSMAUG00000012730) #29	Prlh (ENSMAUG00000007380) #30	Rab17 (ENSMAUG00000000642) #31	ENSMAUG00000008054 #32	Rbm44 (ENSMAUG00000022041) #33	Ramp1 (ENSMAUG00000013655) #34	ENSMAUG00000011807	Ube2f (ENSMAUG00000016797) #35	Scly (ENSMAUG00000015726) #36
Chinese hamster chok1gshd	MODERN SPECIES	1	Atg16l1 (ENSCGRG00001024596) #8	Sag (ENSCGRG00001024487) #9	Dgkd (ENSCGRG00001024793) #10	Usp40 (ENSCGRG00001007804) #11	ENSCGRG00001000882	Dnajb3 (ENSCGRG00001009691) #14	Mroh2a (ENSCGRG00001000590) #15	Hjurp (ENSCGRG00001024392) #16	Trpm8 (ENSCGRG00001024258) #18	Spp2 (ENSCGRG00001024730) #19	Arl4c (ENSCGRG00001010866) #20	ENSCGRG00001024628	Sh3bp4 (ENSCGRG00001009956) #21	ENSCGRG00001024137	ENSCGRG00001009648	Agap1 (ENSCGRG00001001480) #22	Gbx2 (ENSCGRG00001024158) #23	Asb18 (ENSCGRG00001024506) #24	Iqca (ENSCGRG00001024459) #25	Ackr3 (ENSCGRG00001010122) #26	Cops8 (ENSCGRG00001024515) #27	Col6a3 (ENSCGRG00001024539) #28	ENSCGRG00001024654 #32	Rbm44 (ENSCGRG00001001293) #33	Ramp1 (ENSCGRG00001024580) #34	ENSCGRG00001010672 #35	Scly (ENSCGRG00001024710) #36	Espnl (ENSCGRG00001024719) #37	Klhl30 (ENSCGRG00001024698)	Erfe (ENSCGRG00001003481)	Ilkap (ENSCGRG00001007174)
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a.h #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764.b	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Prairie vole	MODERN SPECIES	354	Ngef (ENSMOCG00000019945)	Neu2 (ENSMOCG00000016430)	Inpp5d (ENSMOCG00000020774) #7	Atg16l1 (ENSMOCG00000022107) #8	Sag (ENSMOCG00000010548) #9	Dgkd (ENSMOCG00000013358) #10	Usp40 (ENSMOCG00000013866) #11	Dnajb3 (ENSMOCG00000005295) #14	Ugt1a1 (ENSMOCG00000006377)	Mroh2a (ENSMOCG00000016439) #15	Hjurp (ENSMOCG00000013256) #16	Trpm8 (ENSMOCG00000011314) #18	Spp2 (ENSMOCG00000019546) #19	Arl4c (ENSMOCG00000006232) #20	Sh3bp4 (ENSMOCG00000008692) #21	Agap1 (ENSMOCG00000017793) #22	Gbx2 (ENSMOCG00000000815) #23	ENSMOCG00000022588	Asb18 (ENSMOCG00000021264) #24	Iqca (ENSMOCG00000001121) #25	Ackr3 (ENSMOCG00000011622) #26	ENSMOCG00000010460 #27	Col6a3 (ENSMOCG00000012323) #28	Mlph (ENSMOCG00000002134) #29	Prlh (ENSMOCG00000018025) #30	Rab17 (ENSMOCG00000006448) #31	ENSMOCG00000017590 #32	Rbm44 (ENSMOCG00000001523) #33	Ramp1 (ENSMOCG00000020434) #34	Ube2f (ENSMOCG00000015739) #35	Scly (ENSMOCG00000000935) #36
Northern American deer mouse	MODERN SPECIES	4	Sag (ENSPEMG00000004231) #9	Dgkd (ENSPEMG00000009119) #10	Usp40 (ENSPEMG00000013853) #11	Ugt1a1 (ENSPEMG00000023160)	ENSPEMG00000031422	Dnajb3 (ENSPEMG00000002492) #14	Mroh2a (ENSPEMG00000015776) #15	ENSPEMG00000021817 #16	ENSPEMG00000025738 #16	Trpm8 (ENSPEMG00000022258) #18	Spp2 (ENSPEMG00000024148) #19	ENSPEMG00000026110	Arl4c (ENSPEMG00000006610) #20	Sh3bp4 (ENSPEMG00000022888) #21	ENSPEMG00000028272	Agap1 (ENSPEMG00000021872) #22	Gbx2 (ENSPEMG00000024862) #23	Asb18 (ENSPEMG00000021968) #24	Iqca (ENSPEMG00000023730) #25	Ackr3 (ENSPEMG00000022737) #26	Cops8 (ENSPEMG00000022562) #27	Col6a3 (ENSPEMG00000023168) #28	Mlph (ENSPEMG00000010755) #29	Prlh (ENSPEMG00000022011) #30	Rab17 (ENSPEMG00000022598) #31	ENSPEMG00000022605 #32	Rbm44 (ENSPEMG00000022866) #33	Ramp1 (ENSPEMG00000030486) #34	Ube2f (ENSPEMG00000023549) #35	Scly (ENSPEMG00000021410) #36	Espnl (ENSPEMG00000022478) #37
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Mus	ANCESTRAL SPECIES	5	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163820	ENSGT00940000162976.g #12	ENSGT00940000163976	ENSGT00940000162976.f #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00860000136022	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976.g #12	ENSGT00940000162976.f #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00860000136022	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.q #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000163976.g.b	ENSGT00940000163976.g.a	ENSGT00940000163976.h	ENSGT00940000163820	ENSGT00940000162976.g #12	ENSGT00940000162976.f #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00860000136022	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.q #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Mouse	MODERN SPECIES		Ugt1a8 (ENSMUSG00000089675)	Ugt1a7c (ENSMUSG00000090124)	Ugt1a6b (ENSMUSG00000090145)	Ugt1a6a (ENSMUSG00000054545)	Ugt1a5 (ENSMUSG00000089943) #12	Ugt1a2 (ENSMUSG00000090171) #12	Dnajb3 (ENSMUSG00000081984) #14	Ugt1a1 (ENSMUSG00000089960)	Mroh2a (ENSMUSG00000079429) #15	Hjurp (ENSMUSG00000044783) #16	Trpm8 (ENSMUSG00000036251) #18	Spp2 (ENSMUSG00000026295) #19	Glrp1 (ENSMUSG00000062310)	Arl4c (ENSMUSG00000049866) #20	Sh3bp4 (ENSMUSG00000036206) #21	Agap1 (ENSMUSG00000055013) #22	Gbx2 (ENSMUSG00000034486) #23	Asb18 (ENSMUSG00000067081) #24	Iqca (ENSMUSG00000026301) #25	Ackr3 (ENSMUSG00000044337) #26	Cops8 (ENSMUSG00000034432) #27	Col6a3 (ENSMUSG00000048126) #28	Mlph (ENSMUSG00000026303) #29	Prlh (ENSMUSG00000090550) #30	Rab17 (ENSMUSG00000026304) #31	Lrrfip1 (ENSMUSG00000026305) #32	Rbm44 (ENSMUSG00000070732) #33	Ramp1 (ENSMUSG00000034353) #34	Ube2f (ENSMUSG00000034343) #35	Scly (ENSMUSG00000026307) #36	Espnl (ENSMUSG00000049515) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000157267 #11	ENSGT00940000163976.g.a	ENSGT00940000163976.h	ENSGT00940000163820	ENSGT00940000162976.g #12	ENSGT00940000162976.f #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00860000136022	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.q #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Steppe mouse	MODERN SPECIES	3264				Dnajb3 (ENSMSIG00000026596) #14	Ugt1a1 (ENSMSIG00000026581)	Mroh2a (ENSMSIG00000026486) #15	ENSMSIG00000026481	Hjurp (ENSMSIG00000026452) #16	Trpm8 (ENSMSIG00000026361) #18	Spp2 (ENSMSIG00000026338) #19	ENSMSIG00000026335	ENSMSIG00000026330	Arl4c (ENSMSIG00000026322) #20	Sh3bp4 (ENSMSIG00000026285) #21	ENSMSIG00000026271	Agap1 (ENSMSIG00000026135) #22	Gbx2 (ENSMSIG00000026131) #23	Asb18 (ENSMSIG00000026105) #24	Iqca (ENSMSIG00000026003) #25	Ackr3 (ENSMSIG00000025992) #26	Cops8 (ENSMSIG00000025975) #27	ENSMSIG00000025965	Col6a3 (ENSMSIG00000025643) #28	Mlph (ENSMSIG00000025599) #29	Prlh (ENSMSIG00000025590) #30	ENSMSIG00000025514 #31	Lrrfip1 (ENSMSIG00000025383) #32	Rbm44 (ENSMSIG00000025367) #33	ENSMSIG00000025346	Ube2f (ENSMSIG00000025282) #35	ENSMSIG00000025274
spretus	MODERN SPECIES		Ugt1a8 (MGP_SPRETEiJ_G0015193)	MGP_SPRETEiJ_G0015194	MGP_SPRETEiJ_G0015196	MGP_SPRETEiJ_G0015195	Ugt1a5 (MGP_SPRETEiJ_G0015197) #12	Ugt1a2 (MGP_SPRETEiJ_G0015198) #12	Dnajb3 (MGP_SPRETEiJ_G0015199) #14	Ugt1a1 (MGP_SPRETEiJ_G0015200)	Mroh2a (MGP_SPRETEiJ_G0015201) #15	Hjurp (MGP_SPRETEiJ_G0015202) #16	Trpm8 (MGP_SPRETEiJ_G0015203) #18	Spp2 (MGP_SPRETEiJ_G0015204) #19	MGP_SPRETEiJ_G0015205	Arl4c (MGP_SPRETEiJ_G0015206) #20	Sh3bp4 (MGP_SPRETEiJ_G0015207) #21	MGP_SPRETEiJ_G0015208 #22	Gbx2 (MGP_SPRETEiJ_G0015209) #23	Asb18 (MGP_SPRETEiJ_G0015210) #24	Iqca (MGP_SPRETEiJ_G0015211) #25	MGP_SPRETEiJ_G0015212	Cops8 (MGP_SPRETEiJ_G0015213) #27	Col6a3 (MGP_SPRETEiJ_G0015214) #28	Mlph (MGP_SPRETEiJ_G0015215) #29	Prlh (MGP_SPRETEiJ_G0015216) #30	Rab17 (MGP_SPRETEiJ_G0015217) #31	Lrrfip1 (MGP_SPRETEiJ_G0015218) #32	Rbm44 (MGP_SPRETEiJ_G0015219) #33	Ramp1 (MGP_SPRETEiJ_G0015220) #34	Ube2f (MGP_SPRETEiJ_G0015221) #35	Scly (MGP_SPRETEiJ_G0015222) #36	Espnl (MGP_SPRETEiJ_G0015223) #37
Ryukyu mouse	MODERN SPECIES		MGP_CAROLIEiJ_G0014389	MGP_CAROLIEiJ_G0014391	MGP_CAROLIEiJ_G0014390	MGP_CAROLIEiJ_G0014392	Ugt1a5 (MGP_CAROLIEiJ_G0014393) #12	Ugt1a2 (MGP_CAROLIEiJ_G0014394) #12	Dnajb3 (MGP_CAROLIEiJ_G0014395) #14	Ugt1a1 (MGP_CAROLIEiJ_G0014396)	MGP_CAROLIEiJ_G0014397 #15	Hjurp (MGP_CAROLIEiJ_G0014398) #16	Trpm8 (MGP_CAROLIEiJ_G0014399) #18	Spp2 (MGP_CAROLIEiJ_G0014400) #19	MGP_CAROLIEiJ_G0014401	Arl4c (MGP_CAROLIEiJ_G0014402) #20	Sh3bp4 (MGP_CAROLIEiJ_G0014403) #21	MGP_CAROLIEiJ_G0014404 #22	Gbx2 (MGP_CAROLIEiJ_G0014405) #23	Asb18 (MGP_CAROLIEiJ_G0014406) #24	Iqca (MGP_CAROLIEiJ_G0014407) #25	Ackr3 (MGP_CAROLIEiJ_G0014408) #26	Cops8 (MGP_CAROLIEiJ_G0014409) #27	Col6a3 (MGP_CAROLIEiJ_G0014410) #28	Mlph (MGP_CAROLIEiJ_G0014411) #29	Prlh (MGP_CAROLIEiJ_G0014412) #30	Rab17 (MGP_CAROLIEiJ_G0014413) #31	Lrrfip1 (MGP_CAROLIEiJ_G0014414) #32	MGP_CAROLIEiJ_G0014415 #33	Ramp1 (MGP_CAROLIEiJ_G0014416) #34	Ube2f (MGP_CAROLIEiJ_G0014417) #35	Scly (MGP_CAROLIEiJ_G0014418) #36	Espnl (MGP_CAROLIEiJ_G0014419) #37
Shrew mouse	MODERN SPECIES	18	Usp40 (MGP_PahariEiJ_G0027625) #11	MGP_PahariEiJ_G0027626	MGP_PahariEiJ_G0027627	MGP_PahariEiJ_G0027628	MGP_PahariEiJ_G0027629	Ugt1a2 (MGP_PahariEiJ_G0027630) #12	Dnajb3 (MGP_PahariEiJ_G0027631) #14	Ugt1a1 (MGP_PahariEiJ_G0027632)	Mroh2a (MGP_PahariEiJ_G0027633) #15	Hjurp (MGP_PahariEiJ_G0027634) #16	Trpm8 (MGP_PahariEiJ_G0027635) #18	Spp2 (MGP_PahariEiJ_G0027636) #19	MGP_PahariEiJ_G0027637	Arl4c (MGP_PahariEiJ_G0027638) #20	Sh3bp4 (MGP_PahariEiJ_G0027639) #21	MGP_PahariEiJ_G0027640 #22	Gbx2 (MGP_PahariEiJ_G0027641) #23	Asb18 (MGP_PahariEiJ_G0027642) #24	Iqca (MGP_PahariEiJ_G0027643) #25	Ackr3 (MGP_PahariEiJ_G0027644) #26	Cops8 (MGP_PahariEiJ_G0027645) #27	Col6a3 (MGP_PahariEiJ_G0027646) #28	Mlph (MGP_PahariEiJ_G0027647) #29	MGP_PahariEiJ_G0027648 #30	MGP_PahariEiJ_G0027649 #31	Lrrfip1 (MGP_PahariEiJ_G0027650) #32	Rbm44 (MGP_PahariEiJ_G0027651) #33	Ramp1 (MGP_PahariEiJ_G0027652) #34	MGP_PahariEiJ_G0027653 #35	Scly (MGP_PahariEiJ_G0027654) #36	Espnl (MGP_PahariEiJ_G0027655) #37
Rat	MODERN SPECIES	19	Neu2 (ENSRNOG00000016962)	Inpp5d (ENSRNOG00000017020) #7	Atg16l1 (ENSRNOG00000017913) #8	Sag (ENSRNOG00000018185) #9	Dgkd (ENSRNOG00000023238) #10	Usp40 (ENSRNOG00000018395) #11	Ugt1a8 (ENSRNOG00000018740)	Dnajb3 (ENSRNOG00000023172) #14	Mroh2a (ENSRNOG00000042182) #15	Hjurp (ENSRNOG00000022911) #16	Trpm8 (ENSRNOG00000019035) #18	Spp2 (ENSRNOG00000053244) #19	Arl4c (ENSRNOG00000069663) #20	Sh3bp4 (ENSRNOG00000019316) #21	ENSRNOG00000067510	Agap1 (ENSRNOG00000019476) #22	Gbx2 (ENSRNOG00000019495) #23	Asb18 (ENSRNOG00000019557) #24	Iqca1 (ENSRNOG00000019592) #25	Ackr3 (ENSRNOG00000019622) #26	Cops8 (ENSRNOG00000019635) #27	Col6a3 (ENSRNOG00000019648) #28	Mlph (ENSRNOG00000019763) #29	Prlh (ENSRNOG00000019871) #30	Rab17 (ENSRNOG00000052979) #31	Lrrfip1 (ENSRNOG00000019892) #32	Rbm44 (ENSRNOG00000024878) #33	ENSRNOG00000066608	Ramp1 (ENSRNOG00000019926) #34	Ube2f (ENSRNOG00000019953) #35	Scly (ENSRNOG00000020083) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1843																Agap1 (ENSNGAG00000014729) #22	Gbx2 (ENSNGAG00000011592) #23	ENSNGAG00000016636 #24	Iqca (ENSNGAG00000021300) #25	Ackr3 (ENSNGAG00000019155) #26	Cops8 (ENSNGAG00000012304) #27	Col6a3 (ENSNGAG00000014907) #28	Mlph (ENSNGAG00000010976) #29	Prlh (ENSNGAG00000000550) #30	Rab17 (ENSNGAG00000020760) #31	ENSNGAG00000010993 #32	Rbm44 (ENSNGAG00000017208) #33	Ramp1 (ENSNGAG00000007276) #34
Lesser Egyptian jerboa	MODERN SPECIES	90	ENSJJAG00000022856	Ngef (ENSJJAG00000016912)	Neu2 (ENSJJAG00000019484)	Inpp5d (ENSJJAG00000022473) #7	Atg16l1 (ENSJJAG00000015516) #8	Sag (ENSJJAG00000018663) #9	Dgkd (ENSJJAG00000017454) #10	Ugt1a1 (ENSJJAG00000008443)	Mroh2a (ENSJJAG00000016234) #15	ENSJJAG00000015930 #16	Trpm8 (ENSJJAG00000021473) #18	Spp2 (ENSJJAG00000019044) #19	Arl4c (ENSJJAG00000010006) #20	ENSJJAG00000018097	Sh3bp4 (ENSJJAG00000024353) #21	Agap1 (ENSJJAG00000013750) #22	Gbx2 (ENSJJAG00000012862) #23	Iqca (ENSJJAG00000018469) #25	Ackr3 (ENSJJAG00000007446) #26	ENSJJAG00000012612 #27	Col6a3 (ENSJJAG00000022723) #28	Mlph (ENSJJAG00000016422) #29	Prlh (ENSJJAG00000010297) #30	Rab17 (ENSJJAG00000016906) #31	Lrrfip1 (ENSJJAG00000018949) #32	ENSJJAG00000021774 #32	Ramp1 (ENSJJAG00000015227) #34	ENSJJAG00000015457 #35	ENSJJAG00000023531 #35	Steap4 (ENSJJAG00000016754)	ENSJJAG00000022868
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.x.a #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.x.a #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Marmotini_b	ANCESTRAL SPECIES	41	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.x.a #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.bb #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Arctic ground squirrel	MODERN SPECIES	164						UGT1A1 (ENSUPAG00010020723)	ENSUPAG00010020741 #14	MROH2A (ENSUPAG00010020747) #15	ENSUPAG00010020787 #16	ENSUPAG00010020812 #18	ENSUPAG00010020817 #18	SPP2 (ENSUPAG00010020834) #19	ARL4C (ENSUPAG00010020852) #20	SH3BP4 (ENSUPAG00010020855) #21	ENSUPAG00010020859	AGAP1 (ENSUPAG00010020866) #22	GBX2 (ENSUPAG00010020920) #23	ASB18 (ENSUPAG00010020926) #24	IQCA1 (ENSUPAG00010020947) #25	ACKR3 (ENSUPAG00010020966) #26	COPS8 (ENSUPAG00010020976) #27	COL6A3 (ENSUPAG00010020987) #28	MLPH (ENSUPAG00010021088) #29	PRLH (ENSUPAG00010021113) #30	RAB17 (ENSUPAG00010021120) #31	LRRFIP1 (ENSUPAG00010021139) #32	RBM44 (ENSUPAG00010021290) #33	RAMP1 (ENSUPAG00010021322) #34	UBE2F (ENSUPAG00010021329) #35	SCLY (ENSUPAG00010021351) #36	ESPNL (ENSUPAG00010021353) #37
Squirrel	MODERN SPECIES	125	NEU2 (ENSSTOG00000028510)	INPP5D (ENSSTOG00000011273) #7	ATG16L1 (ENSSTOG00000027288) #8	SAG (ENSSTOG00000011295) #9	DGKD (ENSSTOG00000011312) #10	USP40 (ENSSTOG00000011333) #11	ENSSTOG00000020425 #14	ENSSTOG00000031804	ENSSTOG00000031047	MROH2A (ENSSTOG00000004577) #15	ENSSTOG00000033781	TRPM8 (ENSSTOG00000014749) #18	SPP2 (ENSSTOG00000023763) #19	ARL4C (ENSSTOG00000023217) #20	SH3BP4 (ENSSTOG00000016367) #21	AGAP1 (ENSSTOG00000005826) #22	GBX2 (ENSSTOG00000010654) #23	ASB18 (ENSSTOG00000022409) #24	IQCA1 (ENSSTOG00000010661) #25	ENSSTOG00000023053 #26	COPS8 (ENSSTOG00000022662) #27	COL6A3 (ENSSTOG00000002685) #28	MLPH (ENSSTOG00000019648) #29	PRLH (ENSSTOG00000024225) #30	RAB17 (ENSSTOG00000019957) #31	LRRFIP1 (ENSSTOG00000028433) #32	RBM44 (ENSSTOG00000008768) #33	RAMP1 (ENSSTOG00000029736) #34	ENSSTOG00000014039 #35	SCLY (ENSSTOG00000014054) #36	ESPNL (ENSSTOG00000022149) #37
Alpin marmot	MODERN SPECIES	8	NGEF (ENSMMMG00000002453)	NEU2 (ENSMMMG00000002492)	INPP5D (ENSMMMG00000002532) #7	ATG16L1 (ENSMMMG00000002802) #8	SAG (ENSMMMG00000003012) #9	DGKD (ENSMMMG00000003046) #10	USP40 (ENSMMMG00000003147) #11	UGT1A6 (ENSMMMG00000003279)	ENSMMMG00000003353 #14	MROH2A (ENSMMMG00000003365) #15	ENSMMMG00000003423 #16	TRPM8 (ENSMMMG00000003533) #18	SPP2 (ENSMMMG00000003655) #19	ARL4C (ENSMMMG00000003661) #20	SH3BP4 (ENSMMMG00000003701) #21	AGAP1 (ENSMMMG00000003728) #22	GBX2 (ENSMMMG00000003792) #23	ENSMMMG00000003806 #24	IQCA1 (ENSMMMG00000003823) #25	ENSMMMG00000003861	ENSMMMG00000003879 #26	COPS8 (ENSMMMG00000003891) #27	COL6A3 (ENSMMMG00000003940) #28	ENSMMMG00000004550 #29	PRLH (ENSMMMG00000004553) #30	RAB17 (ENSMMMG00000004563) #31	ENSMMMG00000004610 #32	RBM44 (ENSMMMG00000004797) #33	RAMP1 (ENSMMMG00000004869) #34	UBE2F (ENSMMMG00000004879) #35	SCLY (ENSMMMG00000004889) #36
Eurasian red squirrel	MODERN SPECIES	12	NEU2 (ENSSVLG00005017599)	INPP5D (ENSSVLG00005017670) #7	ATG16L1 (ENSSVLG00005018238) #8	SAG (ENSSVLG00005018394) #9	DGKD (ENSSVLG00005018560) #10	USP40 (ENSSVLG00005018876) #11	UGT1A1 (ENSSVLG00005019841)	ENSSVLG00005020320 #14	MROH2A (ENSSVLG00005020369) #15	ENSSVLG00005020986 #16	TRPM8 (ENSSVLG00005021126) #18	ENSSVLG00005021538 #19	ARL4C (ENSSVLG00005021610) #20	SH3BP4 (ENSSVLG00005021655) #21	ENSSVLG00005021682	AGAP1 (ENSSVLG00005021722) #22	GBX2 (ENSSVLG00005021888) #23	ASB18 (ENSSVLG00005021908) #24	IQCA1 (ENSSVLG00005022036) #25	ENSSVLG00005022369 #26	COPS8 (ENSSVLG00005022383) #27	COL6A3 (ENSSVLG00005022505) #28	ENSSVLG00005022994 #29	ENSSVLG00005023016 #29	PRLH (ENSSVLG00005023077) #30	ENSSVLG00005023144	ENSSVLG00005023170	ENSSVLG00005023224 #32	RBM44 (ENSSVLG00005023463) #33	RAMP1 (ENSSVLG00005023605) #34	ENSSVLG00005023661 #35
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.y #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00900000143236	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.y #35	ENSGT00940000157773 #36
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00900000143236	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.y #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Long-tailed chinchilla	MODERN SPECIES	160	NEU2 (ENSCLAG00000012674)	INPP5D (ENSCLAG00000015629) #7	ATG16L1 (ENSCLAG00000010328) #8	SAG (ENSCLAG00000009439) #9	DGKD (ENSCLAG00000011641) #10	USP40 (ENSCLAG00000008763) #11	ENSCLAG00000011557	ENSCLAG00000014326	ENSCLAG00000011830 #12	MROH2A (ENSCLAG00000016264) #15	HJURP (ENSCLAG00000012207) #16	TRPM8 (ENSCLAG00000013665) #18	SPP2 (ENSCLAG00000016002) #19	ARL4C (ENSCLAG00000010525) #20	SH3BP4 (ENSCLAG00000009544) #21	AGAP1 (ENSCLAG00000015901) #22	GBX2 (ENSCLAG00000008221) #23	ENSCLAG00000007670 #24	IQCA1 (ENSCLAG00000008889) #25	ACKR3 (ENSCLAG00000008658) #26
Degu	MODERN SPECIES	130	NEU2 (ENSODEG00000008947)	INPP5D (ENSODEG00000008216) #7	ENSODEG00000019603	ATG16L1 (ENSODEG00000008154) #8	SAG (ENSODEG00000008121) #9	DGKD (ENSODEG00000008384) #10	ENSODEG00000019500	ENSODEG00000007995	ENSODEG00000008578 #11	UGT1A6 (ENSODEG00000009095)	MROH2A (ENSODEG00000008630) #15	TRPM8 (ENSODEG00000012967) #18	SPP2 (ENSODEG00000008199) #19	ARL4C (ENSODEG00000019668) #20	SH3BP4 (ENSODEG00000008911) #21	AGAP1 (ENSODEG00000009204) #22	GBX2 (ENSODEG00000008224) #23	ASB18 (ENSODEG00000008270) #24	IQCA1 (ENSODEG00000009201) #25	ACKR3 (ENSODEG00000019748) #26	COPS8 (ENSODEG00000008319) #27	COL6A3 (ENSODEG00000008236) #28	ENSODEG00000009039	MLPH (ENSODEG00000009468) #29	PRLH (ENSODEG00000010289) #30	ENSODEG00000010103 #32	ENSODEG00000011179 #32	RBM44 (ENSODEG00000011354) #33	ENSODEG00000009348 #34	ENSODEG00000008602 #35	SCLY (ENSODEG00000009146) #36
Guinea pig	MODERN SPECIES	13	NGEF (ENSCPOG00000013080)	NEU2 (ENSCPOG00000009389)	INPP5D (ENSCPOG00000011364) #7	ATG16L1 (ENSCPOG00000011372) #8	SAG (ENSCPOG00000013680) #9	DGKD (ENSCPOG00000009544) #10	USP40 (ENSCPOG00000003324) #11	ENSCPOG00000035407 #12	UGT1A6 (ENSCPOG00000038016)	MROH2A (ENSCPOG00000006472) #15	ENSCPOG00000004994 #16	Trpm8 (ENSCPOG00000005510) #18	SPP2 (ENSCPOG00000014773) #19	ENSCPOG00000038150 #20	SH3BP4 (ENSCPOG00000023889) #21	AGAP1 (ENSCPOG00000021863) #22	GBX2 (ENSCPOG00000020471) #23	ASB18 (ENSCPOG00000008264) #24	IQCA1 (ENSCPOG00000015228) #25	ACKR3 (ENSCPOG00000014142) #26	COPS8 (ENSCPOG00000031921) #27	COL6A3 (ENSCPOG00000011331) #28	ENSCPOG00000031355	MLPH (ENSCPOG00000026459) #29	PRLH (ENSCPOG00000020075) #30	ENSCPOG00000032081	RAB17 (ENSCPOG00000015131) #31	LRRFIP1 (ENSCPOG00000006777) #32	RBM44 (ENSCPOG00000023598) #33	RAMP1 (ENSCPOG00000026974) #34	UBE2F (ENSCPOG00000006368) #35
Naked mole-rat female	MODERN SPECIES	17	ATG16L1 (ENSHGLG00000019537) #8	SAG (ENSHGLG00000007228) #9	USP40 (ENSHGLG00000009619) #11	ENSHGLG00000047617	ENSHGLG00000047348	ENSHGLG00000047101	ENSHGLG00000039591	ENSHGLG00000002754	ENSHGLG00000003078 #16	ENSHGLG00000050789 #16	TRPM8 (ENSHGLG00000003296) #18	SPP2 (ENSHGLG00000003921) #19	ARL4C (ENSHGLG00000020294) #20	ENSHGLG00000049334	SH3BP4 (ENSHGLG00000019412) #21	AGAP1 (ENSHGLG00000019295) #22	GBX2 (ENSHGLG00000018155) #23	ASB18 (ENSHGLG00000018519) #24	IQCA1 (ENSHGLG00000018573) #25	ACKR3 (ENSHGLG00000008401) #26	COPS8 (ENSHGLG00000008745) #27	COL6A3 (ENSHGLG00000012006) #28	MLPH (ENSHGLG00000002426) #29	PRLH (ENSHGLG00000002592) #30	ENSHGLG00000003183 #32	RBM44 (ENSHGLG00000004621) #33	ENSHGLG00000043226	ENSHGLG00000044706 #34	ENSHGLG00000047734	ENSHGLG00000006249 #35	SCLY (ENSHGLG00000006999) #36
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000154793.C.ab #22
Pika	MODERN SPECIES	2502																ENSOPRG00000003440 #22
Rabbit	MODERN SPECIES	680																AGAP1 (ENSOCUG00000012670) #22
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00950000185133	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163820	ENSGT00940000167884	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Cat	MODERN SPECIES	239	NGEF (ENSFCAG00000032214)	NEU2 (ENSFCAG00000038619)	INPP5D (ENSFCAG00000011321) #7	ATG16L1 (ENSFCAG00000011322) #8	SAG (ENSFCAG00000011323) #9	DGKD (ENSFCAG00000002072) #10	ENSFCAG00000028768	UGT1A1 (ENSFCAG00000009700)	ENSFCAG00000025084 #14	MROH2A (ENSFCAG00000019012) #15	HJURP (ENSFCAG00000045340) #16	TRPM8 (ENSFCAG00000009701) #18	SPP2 (ENSFCAG00000009703) #19	ARL4C (ENSFCAG00000033226) #20	SH3BP4 (ENSFCAG00000023910) #21	AGAP1 (ENSFCAG00000000441) #22	GBX2 (ENSFCAG00000031943) #23	ASB18 (ENSFCAG00000025253) #24	IQCA1 (ENSFCAG00000008499) #25	ACKR3 (ENSFCAG00000012557) #26	COPS8 (ENSFCAG00000013789) #27	COL6A3 (ENSFCAG00000012720) #28	MLPH (ENSFCAG00000012722) #29	PRLH (ENSFCAG00000023990) #30	RAB17 (ENSFCAG00000012724) #31	LRRFIP1 (ENSFCAG00000012725) #32	RBM44 (ENSFCAG00000024366) #33	RAMP1 (ENSFCAG00000027462) #34	UBE2F (ENSFCAG00000001839) #35	SCLY (ENSFCAG00000025440) #36	ESPNL (ENSFCAG00000026252) #37
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163820	ENSGT00940000167884	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Panthera_a	ANCESTRAL SPECIES	6	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000167884	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
leopard	MODERN SPECIES	12	NEU2 (ENSPPRG00000009351)	INPP5D (ENSPPRG00000011130) #7	ATG16L1 (ENSPPRG00000013858) #8	SAG (ENSPPRG00000016263) #9	DGKD (ENSPPRG00000022746) #10	ENSPPRG00000001460	ENSPPRG00000016397 #14	ENSPPRG00000002019	MROH2A (ENSPPRG00000005126) #15	ENSPPRG00000005246 #16	ENSPPRG00000006139 #18	ENSPPRG00000007515 #18	SPP2 (ENSPPRG00000008027) #19	ARL4C (ENSPPRG00000016572) #20	SH3BP4 (ENSPPRG00000008510) #21	AGAP1 (ENSPPRG00000010171) #22	GBX2 (ENSPPRG00000010648) #23	ASB18 (ENSPPRG00000010778) #24	IQCA1 (ENSPPRG00000012535) #25	ACKR3 (ENSPPRG00000016797) #26	COPS8 (ENSPPRG00000013932) #27	COL6A3 (ENSPPRG00000002843) #28	MLPH (ENSPPRG00000003394) #29	PRLH (ENSPPRG00000003621) #30	RAB17 (ENSPPRG00000003974) #31	LRRFIP1 (ENSPPRG00000005304) #32	RBM44 (ENSPPRG00000007089) #33	RAMP1 (ENSPPRG00000007670) #34	UBE2F (ENSPPRG00000008758) #35	ENSPPRG00000009017	SCLY (ENSPPRG00000009943) #36
lion	MODERN SPECIES	8	NGEF (ENSPLOG00000014305)	NEU2 (ENSPLOG00000014239)	INPP5D (ENSPLOG00000013746) #7	ATG16L1 (ENSPLOG00000013544) #8	SAG (ENSPLOG00000013459) #9	DGKD (ENSPLOG00000013163) #10	ENSPLOG00000013007	ENSPLOG00000012939 #14	UGT1A1 (ENSPLOG00000012783)	MROH2A (ENSPLOG00000012113) #15	ENSPLOG00000012049 #16	TRPM8 (ENSPLOG00000011686) #18	SPP2 (ENSPLOG00000011583) #19	ARL4C (ENSPLOG00000011561) #20	SH3BP4 (ENSPLOG00000011535) #21	AGAP1 (ENSPLOG00000011221) #22	GBX2 (ENSPLOG00000011149) #23	ASB18 (ENSPLOG00000011083) #24	IQCA1 (ENSPLOG00000010813) #25	ACKR3 (ENSPLOG00000021956) #26	COPS8 (ENSPLOG00000021940) #27	COL6A3 (ENSPLOG00000021420) #28	MLPH (ENSPLOG00000021064) #29	PRLH (ENSPLOG00000020976) #30	RAB17 (ENSPLOG00000020937) #31	ENSPLOG00000020777 #32	RBM44 (ENSPLOG00000020554) #33	RAMP1 (ENSPLOG00000020505) #34	ENSPLOG00000020308	SCLY (ENSPLOG00000020183) #36	ESPNL (ENSPLOG00000020073) #37
Tiger	DUPLICATION
Tiger	MODERN SPECIES	177	INPP5D (ENSPTIG00000009805) #7	ATG16L1 (ENSPTIG00000013249) #8	SAG (ENSPTIG00000020434) #9	DGKD (ENSPTIG00000000304) #10	ENSPTIG00000007166	ENSPTIG00000009514 #11	ENSPTIG00000010578	ENSPTIG00000011473 #14	MROH2A (ENSPTIG00000012321) #15	ENSPTIG00000018950 #16	TRPM8 (ENSPTIG00000005408) #18	ENSPTIG00000010461 #19	ARL4C (ENSPTIG00000011404) #20	SH3BP4 (ENSPTIG00000012088) #21	ENSPTIG00000013268 #22	ENSPTIG00000014757 #22	IQCA1 (ENSPTIG00000015897) #25	ACKR3 (ENSPTIG00000006941) #26	COPS8 (ENSPTIG00000019830) #27	COL6A3 (ENSPTIG00000005288) #28	MLPH (ENSPTIG00000011594) #29	RAB17 (ENSPTIG00000014452) #31
Tiger	MODERN SPECIES	177	NEU2 (ENSPTIG00000009226)	INPP5D (ENSPTIG00000009805) #7	ATG16L1 (ENSPTIG00000013249) #8	SAG (ENSPTIG00000020434) #9	DGKD (ENSPTIG00000000304) #10	ENSPTIG00000007166	ENSPTIG00000009514 #11	ENSPTIG00000010578	ENSPTIG00000011473 #14	MROH2A (ENSPTIG00000012321) #15	ENSPTIG00000018950 #16	TRPM8 (ENSPTIG00000005408) #18	ENSPTIG00000010461 #19	ARL4C (ENSPTIG00000011404) #20	SH3BP4 (ENSPTIG00000012088) #21	ENSPTIG00000013268 #22	ENSPTIG00000014757 #22	IQCA1 (ENSPTIG00000015897) #25	ACKR3 (ENSPTIG00000006941) #26	COPS8 (ENSPTIG00000019830) #27	COL6A3 (ENSPTIG00000005288) #28	MLPH (ENSPTIG00000011594) #29	RAB17 (ENSPTIG00000014452) #31
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Canidae	ANCESTRAL SPECIES	20	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Dingo	MODERN SPECIES	304	NEU2 (ENSCAFG00020023768)	ENSCAFG00020023771 #7	ENSCAFG00020023772 #7	ATG16L1 (ENSCAFG00020023778) #8	SAG (ENSCAFG00020023788) #9	DGKD (ENSCAFG00020023838) #10	USP40 (ENSCAFG00020024278) #11	ENSCAFG00020024284 #14	UGT1A1 (ENSCAFG00020024287)	MROH2A (ENSCAFG00020024299) #15	ENSCAFG00020024315 #16	TRPM8 (ENSCAFG00020024320) #18	SPP2 (ENSCAFG00020024397) #19	ARL4C (ENSCAFG00020024408) #20	SH3BP4 (ENSCAFG00020024420) #21	AGAP1 (ENSCAFG00020024428) #22	GBX2 (ENSCAFG00020024436) #23	ASB18 (ENSCAFG00020024438) #24	IQCA1 (ENSCAFG00020024445) #25	ACKR3 (ENSCAFG00020024456) #26	COPS8 (ENSCAFG00020024461) #27	COL6A3 (ENSCAFG00020024474) #28	MLPH (ENSCAFG00020024615) #29	PRLH (ENSCAFG00020024617) #30	RAB17 (ENSCAFG00020024618) #31	ENSCAFG00020024621 #32	RBM44 (ENSCAFG00020024622) #33	RAMP1 (ENSCAFG00020024626) #34	UBE2F (ENSCAFG00020024628) #35	SCLY (ENSCAFG00020024632) #36	ESPNL (ENSCAFG00020024636) #37
Dog	MODERN SPECIES	17	NGEF (ENSCAFG00845020745)	NEU2 (ENSCAFG00845020896)	INPP5D (ENSCAFG00845020969) #7	ATG16L1 (ENSCAFG00845021359) #8	SAG (ENSCAFG00845021999) #9	DGKD (ENSCAFG00845022486) #10	USP40 (ENSCAFG00845023517) #11	UGT1A6 (ENSCAFG00845024767)	DNAJB3 (ENSCAFG00845025169) #14	MROH2A (ENSCAFG00845025258) #15	HJURP (ENSCAFG00845025475) #16	TRPM8 (ENSCAFG00845025630) #18	SPP2 (ENSCAFG00845025963) #19	ARL4C (ENSCAFG00845026062) #20	SH3BP4 (ENSCAFG00845026088) #21	AGAP1 (ENSCAFG00845026357) #22	ENSCAFG00845027356	ENSCAFG00845027384	GBX2 (ENSCAFG00845027418) #23	ASB18 (ENSCAFG00845027512) #24	IQCA1 (ENSCAFG00845027594) #25	ACKR3 (ENSCAFG00845027671) #26	COPS8 (ENSCAFG00845027880) #27	COL6A3 (ENSCAFG00845028105) #28	MLPH (ENSCAFG00845028517) #29	PRLH (ENSCAFG00845028761) #30	RAB17 (ENSCAFG00845028808) #31	ENSCAFG00845029031 #32	RBM44 (ENSCAFG00845029315) #33	RAMP1 (ENSCAFG00845029374) #34	UBE2F (ENSCAFG00845029467) #35
Red fox	MODERN SPECIES	57	ATG16L1 (ENSVVUG00000025467) #8	SAG (ENSVVUG00000025439) #9	DGKD (ENSVVUG00000025429) #10	USP40 (ENSVVUG00000025419) #11	ENSVVUG00000025415 #12	ENSVVUG00000025414 #14	ENSVVUG00000025412	MROH2A (ENSVVUG00000025394) #15	HJURP (ENSVVUG00000025386) #16	ENSVVUG00000025381	ENSVVUG00000025342 #18	ENSVVUG00000025315 #18	SPP2 (ENSVVUG00000025313) #19	ARL4C (ENSVVUG00000025311) #20	SH3BP4 (ENSVVUG00000025306) #21	AGAP1 (ENSVVUG00000025272) #22	GBX2 (ENSVVUG00000025264) #23
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970.n #37
Mustelinae	ANCESTRAL SPECIES	35	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309.f.a #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26
American mink	MODERN SPECIES	15	NEU2 (ENSNVIG00000004399)	INPP5D (ENSNVIG00000004409) #7	ATG16L1 (ENSNVIG00000004487) #8	SAG (ENSNVIG00000004830) #9	DGKD (ENSNVIG00000005206) #10	USP40 (ENSNVIG00000005270) #11	UGT1A1 (ENSNVIG00000005431)	ENSNVIG00000005494 #14	MROH2A (ENSNVIG00000005505) #15	ENSNVIG00000005631 #16	TRPM8 (ENSNVIG00000005660) #18	SPP2 (ENSNVIG00000005759) #19	ARL4C (ENSNVIG00000005778) #20	SH3B4 (ENSNVIG00000005798) #21	ENSNVIG00000005887	AGAP1 (ENSNVIG00000005895) #22	GBX2 (ENSNVIG00000005973) #23	ASB18 (ENSNVIG00000005978) #24	IQCA1 (ENSNVIG00000005994) #25	ACKR3 (ENSNVIG00000006074) #26	ENSNVIG00000006094 #27
Ferret	MODERN SPECIES	412										ENSMPUG00000002236 #15	ENSMPUG00000002240 #16	TRPM8 (ENSMPUG00000002248) #18	SPP2 (ENSMPUG00000002325) #19	ARL4C (ENSMPUG00000019267) #20	SH3BP4 (ENSMPUG00000002332) #21	AGAP1 (ENSMPUG00000002334) #22	GBX2 (ENSMPUG00000002403) #23	ENSMPUG00000002417 #24	IQCA1 (ENSMPUG00000002421) #25	ACKR3 (ENSMPUG00000002423) #26
Ursidae	ANCESTRAL SPECIES	7	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970.n #37	ENSGT00940000158597
Giant Panda	MODERN SPECIES	11	NGEF (ENSAMEG00000016403)	NEU2 (ENSAMEG00000016400)	INPP5D (ENSAMEG00000016368) #7	ATG16L1 (ENSAMEG00000016324) #8	SAG (ENSAMEG00000016262) #9	DGKD (ENSAMEG00000016226) #10	ENSAMEG00000016212	ENSAMEG00000016164 #12	ENSAMEG00000016205 #14	MROH2A (ENSAMEG00000016117) #15	ENSAMEG00000016113 #16	TRPM8 (ENSAMEG00000016067) #18	SPP2 (ENSAMEG00000016053) #19	ARL4C (ENSAMEG00000016052) #20	SH3BP4 (ENSAMEG00000001790) #21	AGAP1 (ENSAMEG00000001750) #22	GBX2 (ENSAMEG00000031021) #23	IQCA1 (ENSAMEG00000001738) #25	ACKR3 (ENSAMEG00000019789) #26	ENSAMEG00000012089 #27	COL6A3 (ENSAMEG00000008251) #28	MLPH (ENSAMEG00000008402) #29	PRLH (ENSAMEG00000008444) #30	RAB17 (ENSAMEG00000025339) #31	ENSAMEG00000008474 #32	RBM44 (ENSAMEG00000008500) #33	RAMP1 (ENSAMEG00000030941) #34	UBE2F (ENSAMEG00000008551) #35	SCLY (ENSAMEG00000008515) #36	ESPNL (ENSAMEG00000014973) #37	KLHL30 (ENSAMEG00000014960)
Ursus	ANCESTRAL SPECIES	12	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00950000185374	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00950000185133	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970.n #37	ENSGT00940000158597
American black bear	MODERN SPECIES	955																AGAP1 (ENSUAMG00000024333) #22	GBX2 (ENSUAMG00000024599) #23
Polar bear	MODERN SPECIES	169	INPP5D (ENSUMAG00000014489) #7	ATG16L1 (ENSUMAG00000014422) #8	SAG (ENSUMAG00000014417) #9	DGKD (ENSUMAG00000013632) #10	USP40 (ENSUMAG00000013473) #11	ENSUMAG00000013463 #14	UGT1A1 (ENSUMAG00000013403)	MROH2A (ENSUMAG00000013376) #15	ENSUMAG00000013374 #16	ENSUMAG00000013341 #18	ENSUMAG00000013318 #18	SPP2 (ENSUMAG00000013313) #19	ARL4C (ENSUMAG00000013306) #20	SH3BP4 (ENSUMAG00000013298) #21	ENSUMAG00000013297	AGAP1 (ENSUMAG00000012743) #22	IQCA1 (ENSUMAG00000012664) #25	ACKR3 (ENSUMAG00000012658) #26	COPS8 (ENSUMAG00000012651) #27	COL6A3 (ENSUMAG00000012021) #28	MLPH (ENSUMAG00000011968) #29	PRLH (ENSUMAG00000011965) #30	ENSUMAG00000011963	ENSUMAG00000011956 #32	RBM44 (ENSUMAG00000011930) #33	UBE2F (ENSUMAG00000011895) #35	SCLY (ENSUMAG00000011882) #36	ILKAP (ENSUMAG00000011877)	PER2 (ENSUMAG00000011574)	TRAF3IP1 (ENSUMAG00000011513)	ASB1 (ENSUMAG00000011505)
Laurasiatheria_c	ANCESTRAL SPECIES	9	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Equus	ANCESTRAL SPECIES	15	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000167884	ENSGT00940000163820	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Horse	MODERN SPECIES	27	DGKD (ENSECAG00000016916) #10	USP40 (ENSECAG00000013493) #11	ENSECAG00000023519 #12	ENSECAG00000058487	ENSECAG00000048565	ENSECAG00000047984	ENSECAG00000030264 #14	MROH2A (ENSECAG00000009998) #15	HJURP (ENSECAG00000010053) #16	ENSECAG00000050711 #18	TRPM8 (ENSECAG00000011427) #18	SPP2 (ENSECAG00000007372) #19	ARL4C (ENSECAG00000000887) #20	SH3BP4 (ENSECAG00000009382) #21	ENSECAG00000044884	AGAP1 (ENSECAG00000014269) #22	GBX2 (ENSECAG00000007324) #23	ASB18 (ENSECAG00000009378) #24	IQCA1 (ENSECAG00000009419) #25	ACKR3 (ENSECAG00000000942) #26	COPS8 (ENSECAG00000013601) #27	COL6A3 (ENSECAG00000020887) #28	MLPH (ENSECAG00000024624) #29	RAB17 (ENSECAG00000010528) #31	PRLH (ENSECAG00000016201) #30	LRRFIP1 (ENSECAG00000016447) #32	RBM44 (ENSECAG00000004979) #33	RAMP1 (ENSECAG00000009250) #34	UBE2F (ENSECAG00000011687) #35	SCLY (ENSECAG00000012094) #36	ESPNL (ENSECAG00000022908) #37
Donkey	MODERN SPECIES	10	INPP5D (ENSEASG00005019862) #7	ATG16L1 (ENSEASG00005019888) #8	SAG (ENSEASG00005019896) #9	DGKD (ENSEASG00005019899) #10	ENSEASG00005027116	ENSEASG00005031382	ENSEASG00005032202 #14	UGT1A6 (ENSEASG00005019912)	MROH2A (ENSEASG00005019918) #15	HJURP (ENSEASG00005019935) #16	ENSEASG00005019946 #18	ENSEASG00005019972 #18	SPP2 (ENSEASG00005019988) #19	ARL4C (ENSEASG00005025684) #20	SH3BP4 (ENSEASG00005019991) #21	AGAP1 (ENSEASG00005020004) #22	GBX2 (ENSEASG00005020029) #23	ASB18 (ENSEASG00005020036) #24	IQCA1 (ENSEASG00005027257) #25	ACKR3 (ENSEASG00005029174) #26	COPS8 (ENSEASG00005007121) #27	COL6A3 (ENSEASG00005007197) #28	MLPH (ENSEASG00005007335) #29	PRLH (ENSEASG00005007336) #30	RAB17 (ENSEASG00005007339) #31	LRRFIP1 (ENSEASG00005007354) #32	RBM44 (ENSEASG00005007379) #33	ENSEASG00005026664 #34	UBE2F (ENSEASG00005007386) #35	SCLY (ENSEASG00005007391) #36	ESPNL (ENSEASG00005007394) #37
Chiroptera	ANCESTRAL SPECIES	5	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Megabat	MODERN SPECIES	1605																AGAP1 (ENSPVAG00000008641) #22
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Greater horseshoe bat	MODERN SPECIES	26	ATG16L1 (ENSRFEG00010004683) #8	SAG (ENSRFEG00010004656) #9	DGKD (ENSRFEG00010004564) #10	USP40 (ENSRFEG00010004446) #11	ENSRFEG00010004416 #14	UGT1A1 (ENSRFEG00010004396)	MROH2A (ENSRFEG00010004304) #15	HJURP (ENSRFEG00010004265) #16	TRPM8 (ENSRFEG00010004176) #18	SPP2 (ENSRFEG00010004143) #19	ARL4C (ENSRFEG00010004132) #20	SH3BP4 (ENSRFEG00010004122) #21	ENSRFEG00010004106	ENSRFEG00010004098	ENSRFEG00010004091	AGAP1 (ENSRFEG00010003950) #22	GBX2 (ENSRFEG00010003880) #23	ASB18 (ENSRFEG00010003863) #24	IQCA1 (ENSRFEG00010003824) #25	ACKR3 (ENSRFEG00010003797) #26	ENSRFEG00010003776 #27	COL6A3 (ENSRFEG00010003671) #28	MLPH (ENSRFEG00010003515) #29	PRLH (ENSRFEG00010003477) #30	RAB17 (ENSRFEG00010003447) #31	ENSRFEG00010003288 #32	RBM44 (ENSRFEG00010003149) #33	RAMP1 (ENSRFEG00010003124) #34	ENSRFEG00010003061 #35	SCLY (ENSRFEG00010002956) #36	ESPNL (ENSRFEG00010002895) #37
Microbat	MODERN SPECIES	940	NEU2 (ENSMLUG00000028068)	INPP5D (ENSMLUG00000017391) #7	ATG16L1 (ENSMLUG00000017395) #8	SAG (ENSMLUG00000017400) #9	DGKD (ENSMLUG00000017404) #10	USP40 (ENSMLUG00000017407) #11	ENSMLUG00000024668	UGT1A6 (ENSMLUG00000017410)	ENSMLUG00000017411 #14	MROH2A (ENSMLUG00000017412) #15	HJURP (ENSMLUG00000017421) #16	TRPM8 (ENSMLUG00000017423) #18	SPP2 (ENSMLUG00000017424) #19	ENSMLUG00000025370	SH3BP4 (ENSMLUG00000011869) #21	AGAP1 (ENSMLUG00000005147) #22	GBX2 (ENSMLUG00000011484) #23	ASB18 (ENSMLUG00000011493) #24	IQCA1 (ENSMLUG00000011512) #25	ACKR3 (ENSMLUG00000011535) #26	COPS8 (ENSMLUG00000006750) #27	COL6A3 (ENSMLUG00000006761) #28	MLPH (ENSMLUG00000000438) #29	ENSMLUG00000000444 #30	RAB17 (ENSMLUG00000000446) #31	LRRFIP1 (ENSMLUG00000002001) #32	RBM44 (ENSMLUG00000002010) #33	RAMP1 (ENSMLUG00000002016) #34	UBE2F (ENSMLUG00000001286) #35	SCLY (ENSMLUG00000001291) #36
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Suina	ANCESTRAL SPECIES	3	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.db #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Pig	MODERN SPECIES	6	NEU2 (ENSSSCG00000016297)	INPP5D (ENSSSCG00000016298) #7	ATG16L1 (ENSSSCG00000016300) #8	SAG (ENSSSCG00000016301) #9	DGKD (ENSSSCG00000009432) #10	USP40 (ENSSSCG00000016306) #11	ENSSSCG00000036274 #12	ENSSSCG00000028217 #14	MROH2A (ENSSSCG00000016305) #15	HJURP (ENSSSCG00000016313) #16	TRPM8 (ENSSSCG00000016314) #18	SPP2 (ENSSSCG00000016315) #19	ARL4C (ENSSSCG00000034293) #20	ENSSSCG00000054647	SH3BP4 (ENSSSCG00000034692) #21	AGAP1 (ENSSSCG00000016317) #22	GBX2 (ENSSSCG00000016319) #23	ASB18 (ENSSSCG00000016318) #24	IQCA1 (ENSSSCG00000016321) #25	ACKR3 (ENSSSCG00000016322) #26	COPS8 (ENSSSCG00000016323) #27	COL6A3 (ENSSSCG00000027331) #28	MLPH (ENSSSCG00000032849) #29	ENSSSCG00000036981 #30	RAB17 (ENSSSCG00000016328) #31	ENSSSCG00000016330 #32	RBM44 (ENSSSCG00000016332) #33	RAMP1 (ENSSSCG00000016331) #34	ENSSSCG00000027723 #35	SCLY (ENSSSCG00000016334) #36	ESPNL (ENSSSCG00000016335) #37
Chacoan peccary	MODERN SPECIES	810	NGEF (ENSCWAG00000021480)	NEU2 (ENSCWAG00000021469)	INPP5D (ENSCWAG00000021461) #7	ATG16L1 (ENSCWAG00000021418) #8	SAG (ENSCWAG00000021393) #9	DGKD (ENSCWAG00000021380) #10	USP40 (ENSCWAG00000021340) #11	ENSCWAG00000021325 #14	ENSCWAG00000021256 #12	MROH2A (ENSCWAG00000021138) #15	ENSCWAG00000021072 #16	TRPM8 (ENSCWAG00000021012) #18	SPP2 (ENSCWAG00000020992) #19	ARL4C (ENSCWAG00000020977) #20	SH3BP4 (ENSCWAG00000020969) #21	AGAP1 (ENSCWAG00000020809) #22	GBX2 (ENSCWAG00000020784) #23	ASB18 (ENSCWAG00000020774) #24	IQCA1 (ENSCWAG00000020641) #25	ACKR3 (ENSCWAG00000020621) #26	COPS8 (ENSCWAG00000020602) #27	ENSCWAG00000020585 #28	ENSCWAG00000020458 #28	ENSCWAG00000020424 #29	PRLH (ENSCWAG00000020415) #30	RAB17 (ENSCWAG00000020392) #31	ENSCWAG00000020311 #32	RBM44 (ENSCWAG00000020263) #33	RAMP1 (ENSCWAG00000020241) #34	UBE2F (ENSCWAG00000020129) #35	SCLY (ENSCWAG00000020097) #36
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Camelidae	ANCESTRAL SPECIES	106	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT01030000236316	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25
Arabian camel	MODERN SPECIES	31	NEU2 (ENSCDRG00005009286)	INPP5D (ENSCDRG00005009359) #7	ATG16L1 (ENSCDRG00005009769) #8	SAG (ENSCDRG00005010393) #9	DGKD (ENSCDRG00005010577) #10	USP40 (ENSCDRG00005010949) #11	UGT1A1 (ENSCDRG00005011851)	ENSCDRG00005011972 #14	MROH2A (ENSCDRG00005012005) #15	ENSCDRG00005012337 #16	TRPM8 (ENSCDRG00005012445) #18	SPP2 (ENSCDRG00005013014) #19	ARL4C (ENSCDRG00005013071) #20	SH3BP4 (ENSCDRG00005013122) #21	ENSCDRG00005013165	AGAP1 (ENSCDRG00005013275) #22	GBX2 (ENSCDRG00005014059) #23	ENSCDRG00005014127 #24	IQCA1 (ENSCDRG00005014153) #25	ACKR3 (ENSCDRG00005014249) #26	COPS8 (ENSCDRG00005014262) #27	COL6A3 (ENSCDRG00005014396) #28	MLPH (ENSCDRG00005014879) #29	PRLH (ENSCDRG00005015101) #30	RAB17 (ENSCDRG00005015123) #31	ENSCDRG00005015174 #32	RBM44 (ENSCDRG00005015462) #33	RAMP1 (ENSCDRG00005015618) #34	UBE2F (ENSCDRG00005015678) #35	SCLY (ENSCDRG00005015868) #36	ESPNL (ENSCDRG00005015985) #37
Alpaca	MODERN SPECIES	1325																ENSVPAG00000006891 #22
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.fb.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.fb.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Bos	ANCESTRAL SPECIES		ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.y.a #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.fb.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.y.a #27	ENSGT00940000156462.C #28	ENSGT00390000013067.a.b	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.fb.a #35	ENSGT00940000157773 #36
Hybrid Bos Indicus	MODERN SPECIES	22	NGEF (ENSBIXG00005025372)	NEU2 (ENSBIXG00005025290)	INPP5D (ENSBIXG00005025252) #7	ATG16L1 (ENSBIXG00005025125) #8	SAG (ENSBIXG00005004262) #9	DGKD (ENSBIXG00005024925) #10	USP40 (ENSBIXG00005006293) #11	ENSBIXG00005007237 #12	ENSBIXG00005024358 #14	MROH2A (ENSBIXG00005024302) #15	HJURP (ENSBIXG00005006477) #16	TRPM8 (ENSBIXG00005023717) #18	ENSBIXG00005023563 #19	ARL4C (ENSBIXG00005023514) #20	SH3BP4 (ENSBIXG00005006169) #21	AGAP1 (ENSBIXG00005023299) #22	GBX2 (ENSBIXG00005022446) #23	ASB18 (ENSBIXG00005022433) #24	IQCA1 (ENSBIXG00005022384) #25	ACKR3 (ENSBIXG00005003805) #26	ENSBIXG00005022302 #27	ENSBIXG00005022233 #28	ENSBIXG00005022201 #28	ENSBIXG00005006159	MLPH (ENSBIXG00005022128) #29	PRLH (ENSBIXG00005022051) #30	RAB17 (ENSBIXG00005022036) #31	ENSBIXG00005021969 #32	RBM44 (ENSBIXG00005021762) #33	RAMP1 (ENSBIXG00005007162) #34	UBE2F (ENSBIXG00005021630) #35
Cow	MODERN SPECIES	22	SNORC (ENSBTAG00000018058)	NGEF (ENSBTAG00000008942)	NEU2 (ENSBTAG00000020672)	INPP5D (ENSBTAG00000020173) #7	ATG16L1 (ENSBTAG00000003928) #8	ENSBTAG00000054491	SAG (ENSBTAG00000021480) #9	DGKD (ENSBTAG00000020616) #10	USP40 (ENSBTAG00000000149) #11	UGT1A6 (ENSBTAG00000026181)	MROH2A (ENSBTAG00000017434) #15	HJURP (ENSBTAG00000024726) #16	TRPM8 (ENSBTAG00000014652) #18	SPP2 (ENSBTAG00000002030) #19	SH3BP4 (ENSBTAG00000013869) #21	AGAP1 (ENSBTAG00000016504) #22	GBX2 (ENSBTAG00000008898) #23	ASB18 (ENSBTAG00000002024) #24	IQCA1 (ENSBTAG00000013505) #25	ACKR3 (ENSBTAG00000018424) #26	COPS8 (ENSBTAG00000005854) #27	COL6A3 (ENSBTAG00000030190) #28	ENSBTAG00000001538	MLPH (ENSBTAG00000000634) #29	PRLH (ENSBTAG00000017615) #30	RAB17 (ENSBTAG00000017624) #31	LRRFIP1 (ENSBTAG00000005354) #32	RBM44 (ENSBTAG00000010676) #33	RAMP1 (ENSBTAG00000011534) #34	UBE2F (ENSBTAG00000026114) #35	SCLY (ENSBTAG00000017826) #36
Bos_a	ANCESTRAL SPECIES	1	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.y.a #27	ENSGT00940000156462.C #28	ENSGT00390000013067.a.b	ENSGT00940000162093	ENSGT00940000162360	ENSGT00390000007540	ENSGT00390000001474	ENSGT00940000159702	ENSGT00390000008920.c.b	ENSGT00390000003897.s.b.a.a.b.b	ENSGT00940000160922
Domestic yak	MODERN SPECIES	22	NEU2 (ENSBGRG00000010344)	INPP5D (ENSBGRG00000010422) #7	ATG16L1 (ENSBGRG00000010889) #8	SAG (ENSBGRG00000011471) #9	DGKD (ENSBGRG00000011771) #10	USP40 (ENSBGRG00000012788) #11	ENSBGRG00000013091 #12	ENSBGRG00000013370 #14	MROH2A (ENSBGRG00000013396) #15	ENSBGRG00000013914 #16	TRPM8 (ENSBGRG00000014019) #18	SPP2 (ENSBGRG00000014551) #19	ENSBGRG00000014768	ARL4C (ENSBGRG00000014785) #20	SH3BP4 (ENSBGRG00000014833) #21	AGAP1 (ENSBGRG00000014952) #22	GBX2 (ENSBGRG00000016577) #23	ASB18 (ENSBGRG00000016615) #24	IQCA1 (ENSBGRG00000016792) #25	ACKR3 (ENSBGRG00000017157) #26	ENSBGRG00000017207 #27	ENSBGRG00000017439 #28	ENSBGRG00000019627	MLPH (ENSBGRG00000019683) #29	PRLH (ENSBGRG00000020092) #30	ENSBGRG00000020161	ENSBGRG00000020176 #31	ENSBGRG00000020281 #32	RBM44 (ENSBGRG00000020637) #33	RAMP1 (ENSBGRG00000020808) #34	UBE2F (ENSBGRG00000020871) #35
Wild yak	MODERN SPECIES	1424																AGAP1 (ENSBMUG00000024630) #22	ENSBMUG00000024558 #23	ASB18 (ENSBMUG00000024550) #24	IQCA1 (ENSBMUG00000024530) #25	ACKR3 (ENSBMUG00000024493) #26
American bison	MODERN SPECIES	3334											ENSBBBG00000005901 #16	TRPM8 (ENSBBBG00000022370) #18	SPP2 (ENSBBBG00000005869) #19	ARL4C (ENSBBBG00000022278) #20	SH3BP4 (ENSBBBG00000022258) #21	AGAP1 (ENSBBBG00000022235) #22	ASB18 (ENSBBBG00000022207) #24	IQCA1 (ENSBBBG00000022175) #25	ACKR3 (ENSBBBG00000022118) #26	COPS8 (ENSBBBG00000022111) #27	COL6A3 (ENSBBBG00000022072) #28	ENSBBBG00000022010	MLPH (ENSBBBG00000021985) #29	PRLH (ENSBBBG00000021906) #30	ENSBBBG00000021901 #31	ENSBBBG00000021887 #31	ENSBBBG00000021880 #32	RBM44 (ENSBBBG00000021787) #33	RAMP1 (ENSBBBG00000021714) #34	UBE2F (ENSBBBG00000021692) #35	SCLY (ENSBBBG00000021547) #36
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00960000189764	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00390000016794.b.p.b	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.fb.a #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Goat	MODERN SPECIES	22	NEU2 (ENSCHIG00000024666)	INPP5D (ENSCHIG00000018691) #7	ATG16L1 (ENSCHIG00000026473) #8	SAG (ENSCHIG00000002782) #9	DGKD (ENSCHIG00000025662) #10	USP40 (ENSCHIG00000023695) #11	ENSCHIG00000012439 #14	ENSCHIG00000022816 #12	MROH2A (ENSCHIG00000016141) #15	HJURP (ENSCHIG00000020706) #16	TRPM8 (ENSCHIG00000026726) #18	SPP2 (ENSCHIG00000021100) #19	ARL4C (ENSCHIG00000008457) #20	SH3BP4 (ENSCHIG00000013947) #21	ENSCHIG00000002736	AGAP1 (ENSCHIG00000015729) #22	GBX2 (ENSCHIG00000017047) #23	ASB18 (ENSCHIG00000024789) #24	IQCA1 (ENSCHIG00000005472) #25	ACKR3 (ENSCHIG00000002856) #26	ENSCHIG00000004774	COPS8 (ENSCHIG00000026994) #27	COL6A3 (ENSCHIG00000018312) #28	MLPH (ENSCHIG00000013604) #29	PRLH (ENSCHIG00000003316) #30	RAB17 (ENSCHIG00000016171) #31	LRRFIP1 (ENSCHIG00000006587) #32	RBM44 (ENSCHIG00000004353) #33	RAMP1 (ENSCHIG00000016318) #34	ENSCHIG00000024862 #35	SCLY (ENSCHIG00000014872) #36
Rambouillet Sheep	MODERN SPECIES		ATG16L1 (ENSOARG00020008250) #8	SAG (ENSOARG00020008029) #9	ENSOARG00020008004	DGKD (ENSOARG00020007641) #10	USP40 (ENSOARG00020007173) #11	ENSOARG00020007139	ENSOARG00020007114 #14	UGT1A1 (ENSOARG00020006230)	MROH2A (ENSOARG00020005342) #15	HJURP (ENSOARG00020005263) #16	TRPM8 (ENSOARG00020005009) #18	SPP2 (ENSOARG00020004890) #19	ARL4C (ENSOARG00020004841) #20	SH3BP4 (ENSOARG00020004812) #21	ENSOARG00020004783	AGAP1 (ENSOARG00020004474) #22	ENSOARG00020004419	GBX2 (ENSOARG00020004399) #23	ASB18 (ENSOARG00020004373) #24	IQCA1 (ENSOARG00020004312) #25	ACKR3 (ENSOARG00020004297) #26	COPS8 (ENSOARG00020004238) #27	COL6A3 (ENSOARG00020002421) #28	MLPH (ENSOARG00020002225) #29	PRLH (ENSOARG00020002190) #30	RAB17 (ENSOARG00020002174) #31	ENSOARG00020002080 #32	RBM44 (ENSOARG00020001964) #33	RAMP1 (ENSOARG00020001939) #34	UBE2F (ENSOARG00020001897) #35	SCLY (ENSOARG00020001794) #36
Siberian musk deer	MODERN SPECIES	5											HJURP (ENSMMSG00000014874) #16	TRPM8 (ENSMMSG00000014911) #18	SPP2 (ENSMMSG00000015101) #19	ARL4C (ENSMMSG00000015137) #20	SH3BP4 (ENSMMSG00000000006) #21	AGAP1 (ENSMMSG00000000036) #22	GBX2 (ENSMMSG00000000134) #23	ASB18 (ENSMMSG00000000149) #24	IQCA1 (ENSMMSG00000000227) #25	ACKR3 (ENSMMSG00000000451) #26	COPS8 (ENSMMSG00000000478) #27	COL6A3 (ENSMMSG00000001012) #28	MLPH (ENSMMSG00000006245) #29	PRLH (ENSMMSG00000006295) #30	RAB17 (ENSMMSG00000006318) #31	LRRFIP1 (ENSMMSG00000006361) #32	ENSMMSG00000006395	RBM44 (ENSMMSG00000006434) #33	RAMP1 (ENSMMSG00000006556) #34	UBE2F (ENSMMSG00000006608) #35	SCLY (ENSMMSG00000006806) #36
Yarkand deer	MODERN SPECIES	12	NGEF (ENSCHYG00000006872)	NEU2 (ENSCHYG00000007003)	INPP5D (ENSCHYG00000007065) #7	ATG16L1 (ENSCHYG00000007339) #8	SAG (ENSCHYG00000007662) #9	DGKD (ENSCHYG00000007792) #10	USP40 (ENSCHYG00000008357) #11	ENSCHYG00000009282 #12	ENSCHYG00000009504 #14	MROH2A (ENSCHYG00000009621) #15	ENSCHYG00000010830 #16	TRPM8 (ENSCHYG00000010936) #18	SPP2 (ENSCHYG00000011433) #19	ARL4C (ENSCHYG00000011511) #20	SH3BP4 (ENSCHYG00000011561) #21	AGAP1 (ENSCHYG00000011724) #22	GBX2 (ENSCHYG00000013427) #23	ASB18 (ENSCHYG00000013467) #24	IQCA1 (ENSCHYG00000013644) #25	ACKR3 (ENSCHYG00000013874) #26	ENSCHYG00000013906 #27	COL6A3 (ENSCHYG00000014186) #28	MLPH (ENSCHYG00000015476) #29	PRLH (ENSCHYG00000015812) #30	RAB17 (ENSCHYG00000015919) #31	ENSCHYG00000016146 #32	RBM44 (ENSCHYG00000016388) #33	RAMP1 (ENSCHYG00000016650) #34	UBE2F (ENSCHYG00000016770) #35	ENSCHYG00000017305	SCLY (ENSCHYG00000017354) #36
Cetacea	ANCESTRAL SPECIES	14	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.u #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Blue whale	MODERN SPECIES	18	NEU2 (ENSBMSG00010001399)	INPP5D (ENSBMSG00010001433) #7	ENSBMSG00010001490	ATG16L1 (ENSBMSG00010001521) #8	SAG (ENSBMSG00010001658) #9	DGKD (ENSBMSG00010001684) #10	USP40 (ENSBMSG00010001729) #11	UGT1A1 (ENSBMSG00010001772)	ENSBMSG00010001823 #14	MROH2A (ENSBMSG00010001850) #15	ENSBMSG00010001894 #16	TRPM8 (ENSBMSG00010001935) #18	SPP2 (ENSBMSG00010002027) #19	ARL4C (ENSBMSG00010002044) #20	SH3BP4 (ENSBMSG00010002065) #21	AGAP1 (ENSBMSG00010002133) #22	GBX2 (ENSBMSG00010002254) #23	ASB18 (ENSBMSG00010002265) #24	IQCA1 (ENSBMSG00010002286) #25	ACKR3 (ENSBMSG00010002301) #26	ENSBMSG00010002318 #27	COL6A3 (ENSBMSG00010002357) #28	MLPH (ENSBMSG00010002426) #29	PRLH (ENSBMSG00010002502) #30	RAB17 (ENSBMSG00010002510) #31	ENSBMSG00010002545 #32	RBM44 (ENSBMSG00010002605) #33	RAMP1 (ENSBMSG00010002628) #34	ENSBMSG00010002640	UBE2F (ENSBMSG00010002678) #35	SCLY (ENSBMSG00010002795) #36
Odontoceti	ANCESTRAL SPECIES	13	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.u #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.u #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00390000008993	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00390000005575.c.a #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.u #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00390000008993	ENSGT01030000234571.b.b.a.a.a	ENSGT00950000182944.B.b	ENSGT00940000156202.a #7	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000162757 #14	ENSGT00940000162976 #12	ENSGT00390000005575.c.a #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977.u #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Beluga whale	MODERN SPECIES	84	NEU2 (ENSDLEG00000010053)	INPP5D (ENSDLEG00000010154) #7	ENSDLEG00000010415	ATG16L1 (ENSDLEG00000010427) #8	SAG (ENSDLEG00000010510) #9	DGKD (ENSDLEG00000010768) #10	USP40 (ENSDLEG00000012848) #11	ENSDLEG00000016375 #12	DNAJB3 (ENSDLEG00000016461) #14	ENSDLEG00000016471 #16	ENSDLEG00000016489 #16	TRPM8 (ENSDLEG00000016562) #18	SPP2 (ENSDLEG00000017377) #19	ARL4C (ENSDLEG00000017399) #20	SH3BP4 (ENSDLEG00000017412) #21	AGAP1 (ENSDLEG00000017441) #22	GBX2 (ENSDLEG00000017681) #23	ASB18 (ENSDLEG00000017688) #24	ENSDLEG00000017709	IQCA1 (ENSDLEG00000017716) #25	ACKR3 (ENSDLEG00000017739) #26	ENSDLEG00000017748	ENSDLEG00000017757	COPS8 (ENSDLEG00000017773) #27	COL6A3 (ENSDLEG00000018104) #28	MLPH (ENSDLEG00000019940) #29	PRLH (ENSDLEG00000019948) #30	RAB17 (ENSDLEG00000019951) #31	LRRFIP1 (ENSDLEG00000019953) #32	RBM44 (ENSDLEG00000019982) #33	ENSDLEG00000019994 #34
Narwhal	MODERN SPECIES	302	ENSMMNG00015010455	NEU2 (ENSMMNG00015010417)	INPP5D (ENSMMNG00015010358) #7	ATG16L1 (ENSMMNG00015010252) #8	SAG (ENSMMNG00015010210) #9	DGKD (ENSMMNG00015010070) #10	ENSMMNG00015009079	USP40 (ENSMMNG00015009011) #11	ENSMMNG00015008978 #14	ENSMMNG00015008941 #12	ENSMMNG00015008890 #16	TRPM8 (ENSMMNG00015008847) #18	SPP2 (ENSMMNG00015008815) #19	ARL4C (ENSMMNG00015008808) #20	SH3BP4 (ENSMMNG00015008800) #21	AGAP1 (ENSMMNG00015008720) #22	GBX2 (ENSMMNG00015008671) #23	ASB18 (ENSMMNG00015008656) #24	IQCA1 (ENSMMNG00015008583) #25	ACKR3 (ENSMMNG00015008569) #26	COPS8 (ENSMMNG00015008526) #27	ENSMMNG00015008502 #28	ENSMMNG00015008476 #28	MLPH (ENSMMNG00015008434) #29	PRLH (ENSMMNG00015008407) #30	RAB17 (ENSMMNG00015008387) #31	ENSMMNG00015008352 #32	RBM44 (ENSMMNG00015008291) #33	RAMP1 (ENSMMNG00015008271) #34	ENSMMNG00015008264	UBE2F (ENSMMNG00015008200) #35
Vaquita	MODERN SPECIES	18	GIGYF2 (ENSPSNG00000004525)	SNORC (ENSPSNG00000004482)	NGEF (ENSPSNG00000004429)	INPP5D (ENSPSNG00000004289) #7	ATG16L1 (ENSPSNG00000004181) #8	SAG (ENSPSNG00000004109) #9	DGKD (ENSPSNG00000004042) #10	USP40 (ENSPSNG00000003975) #11	ENSPSNG00000003921 #14	ENSPSNG00000003839 #12	ENSPSNG00000003808 #16	TRPM8 (ENSPSNG00000003631) #18	SPP2 (ENSPSNG00000003569) #19	ARL4C (ENSPSNG00000003549) #20	SH3BP4 (ENSPSNG00000003528) #21	AGAP1 (ENSPSNG00000003418) #22	GBX2 (ENSPSNG00000003338) #23	ASB18 (ENSPSNG00000003310) #24	IQCA1 (ENSPSNG00000003287) #25	ACKR3 (ENSPSNG00000003273) #26	ENSPSNG00000003245	ENSPSNG00000003210 #27	COL6A3 (ENSPSNG00000002947) #28	MLPH (ENSPSNG00000002756) #29	PRLH (ENSPSNG00000002713) #30	RAB17 (ENSPSNG00000002680) #31	ENSPSNG00000002631 #32	RBM44 (ENSPSNG00000002552) #33	RAMP1 (ENSPSNG00000002530) #34	UBE2F (ENSPSNG00000002452) #35	SCLY (ENSPSNG00000002340) #36
Dolphin	MODERN SPECIES	4788																AGAP1 (ENSTTRG00000007444) #22	GBX2 (ENSTTRG00000007446) #23
Sperm whale	MODERN SPECIES	11	SCLY (ENSPCTG00005009247) #36	UBE2F (ENSPCTG00005008897) #35	RAMP1 (ENSPCTG00005008839) #34	RBM44 (ENSPCTG00005008672) #33	LRRFIP1 (ENSPCTG00005008610) #32	RAB17 (ENSPCTG00005008547) #31	PRLH (ENSPCTG00005008504) #30	ENSPCTG00005022077 #29	ENSPCTG00005022060 #28	ENSPCTG00005022048 #28	COPS8 (ENSPCTG00005022033) #27	ENSPCTG00005022024	ACKR3 (ENSPCTG00005022020) #26	IQCA1 (ENSPCTG00005022007) #25	ASB18 (ENSPCTG00005021991) #24	AGAP1 (ENSPCTG00005021347) #22	SPP2 (ENSPCTG00005021218) #19	TRPM8 (ENSPCTG00005021020) #18	HJURP (ENSPCTG00005020990) #16	DNAJB3 (ENSPCTG00005020979) #14	ENSPCTG00005020965	ENSPCTG00005020954	UGT1A1 (ENSPCTG00005020821)	USP40 (ENSPCTG00005020441) #11	DGKD (ENSPCTG00005020040) #10	ATG16L1 (ENSPCTG00005019908) #8	EFHD1 (ENSPCTG00005019837)	KCNJ13 (ENSPCTG00005019789)	GIGYF2 (ENSPCTG00005019661)	NEU2 (ENSPCTG00005019547)	ENSPCTG00005019529
Atlantogenata	ANCESTRAL SPECIES	74	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37
Xenarthra	ANCESTRAL SPECIES	697															ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27
Sloth	MODERN SPECIES	4621																AGAP1 (ENSCHOG00000010057) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1759																ENSDNOG00000042359 #22	GBX2 (ENSDNOG00000016724) #23	ENSDNOG00000037746	ASB18 (ENSDNOG00000043632) #24	IQCA1 (ENSDNOG00000008579) #25	ENSDNOG00000031759	ACKR3 (ENSDNOG00000011040) #26	ENSDNOG00000035628 #27
Armadillo	MODERN SPECIES	1793															SH3BP4 (ENSDNOG00000048631) #21	ENSDNOG00000044828 #22
Afrotheria	ANCESTRAL SPECIES	80	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37	ENSGT00940000158597
Tenrec	MODERN SPECIES	4986																ENSETEG00000019907 #22
Afrotheria_a	ANCESTRAL SPECIES	79	ENSGT00940000153936.a #8	ENSGT00950000182887.C.b.a #9	ENSGT00940000159041 #10	ENSGT00940000157267 #11	ENSGT00940000163976	ENSGT00940000163820	ENSGT00940000162976 #12	ENSGT00940000162757 #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000157773 #36	ENSGT00940000156970 #37	ENSGT00940000158597
Elephant	DUPLICATION
Elephant	MODERN SPECIES	450	ENSLAFG00000029526	ENSLAFG00000031114	ENSLAFG00000030587	ENSLAFG00000026824 #12	ENSLAFG00000028960 #12	ENSLAFG00000031343 #14	UGT1A1 (ENSLAFG00000031174)	ENSLAFG00000027571 #15	ENSLAFG00000022466 #15	ENSLAFG00000008536 #16	TRPM8 (ENSLAFG00000015515) #18	SPP2 (ENSLAFG00000015239) #19	ARL4C (ENSLAFG00000028097) #20	SH3BP4 (ENSLAFG00000015642) #21	ENSLAFG00000032232 #22	ENSLAFG00000003064 #22	GBX2 (ENSLAFG00000009536) #23	IQCA1 (ENSLAFG00000017002) #25	ACKR3 (ENSLAFG00000003100) #26	COPS8 (ENSLAFG00000008617) #27	COL6A3 (ENSLAFG00000013476) #28	MLPH (ENSLAFG00000016172) #29	PRLH (ENSLAFG00000021604) #30	RAB17 (ENSLAFG00000017466) #31	LRRFIP1 (ENSLAFG00000015782) #32	RBM44 (ENSLAFG00000004044) #33	ENSLAFG00000006470 #34	UBE2F (ENSLAFG00000014184) #35	SCLY (ENSLAFG00000012853) #36	ENSLAFG00000027257	ESPNL (ENSLAFG00000018304) #37
Elephant	MODERN SPECIES	450	ENSLAFG00000027547	ENSLAFG00000029526	ENSLAFG00000031114	ENSLAFG00000030587	ENSLAFG00000026824 #12	ENSLAFG00000028960 #12	ENSLAFG00000031343 #14	UGT1A1 (ENSLAFG00000031174)	ENSLAFG00000027571 #15	ENSLAFG00000022466 #15	ENSLAFG00000008536 #16	TRPM8 (ENSLAFG00000015515) #18	SPP2 (ENSLAFG00000015239) #19	ARL4C (ENSLAFG00000028097) #20	SH3BP4 (ENSLAFG00000015642) #21	ENSLAFG00000032232 #22	ENSLAFG00000003064 #22	GBX2 (ENSLAFG00000009536) #23	IQCA1 (ENSLAFG00000017002) #25	ACKR3 (ENSLAFG00000003100) #26	COPS8 (ENSLAFG00000008617) #27	COL6A3 (ENSLAFG00000013476) #28	MLPH (ENSLAFG00000016172) #29	PRLH (ENSLAFG00000021604) #30	RAB17 (ENSLAFG00000017466) #31	LRRFIP1 (ENSLAFG00000015782) #32	RBM44 (ENSLAFG00000004044) #33	ENSLAFG00000006470 #34	UBE2F (ENSLAFG00000014184) #35	SCLY (ENSLAFG00000012853) #36	ENSLAFG00000027257
Hyrax	MODERN SPECIES	4249																AGAP1 (ENSPCAG00000008073) #22
Marsupialia	ANCESTRAL SPECIES	31	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000159677.d	ENSGT00940000163820	ENSGT00940000163976	ENSGT00940000157267 #11	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000156322.g	ENSGT00940000154793.C.`b.a ##22	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT01100000263477.A.b.a.a.a.a.a.b.b	ENSGT01100000263477.A.b.a.a.a.a.b	ENSGT01100000263477.A.b.a.a.a.a.a.a	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000159677.d	ENSGT00940000163820	ENSGT00940000163976	ENSGT00940000157267 #11	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000156322.g	ENSGT00940000154793.C.`b.a ##22	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT01100000263477.A.b.a.a.a.a.a.b.b	ENSGT01100000263477.A.b.a.a.a.a.b	ENSGT01100000263477.A.b.a.a.a.a.a.a.b	ENSGT00390000000977.b #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b.a #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34
Diprotodontia	ANCESTRAL SPECIES	73	ENSGT00950000182997.a.b.b.a	ENSGT00940000160683	ENSGT00940000161997.a	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000159677.d	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT01100000263477.A.b.a.a.a.a.a.b.b
Diprotodontia_a	ANCESTRAL SPECIES	70	ENSGT00950000182997.a.b.b.a	ENSGT00940000160683	ENSGT00940000161997.a	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000159677.d	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT01100000263477.A.b.a.a.a.a.a.b.b.b
koala	MODERN SPECIES	262									ENSPCIG00000030738	ASB1 (ENSPCIG00000026382)	TRAF3IP1 (ENSPCIG00000026388)	ENSPCIG00000026391	ENSPCIG00000026395	ARL4C (ENSPCIG00000003836) #20	SH3BP4 (ENSPCIG00000011233) #21	AGAP1 (ENSPCIG00000028818) #22	ENSPCIG00000028824	GBX2 (ENSPCIG00000037428) #23	ASB18 (ENSPCIG00000028826) #24	IQCA1 (ENSPCIG00000028828) #25
Common wonbat	MODERN SPECIES	787						TWIST2 (ENSVURG00010010490)	ASB1 (ENSVURG00010010493)	ENSVURG00010010502	ENSVURG00010010534	ENSVURG00010010536	ENSVURG00010010549	ENSVURG00010010564	ARL4C (ENSVURG00010010587) #20	SH3BP4 (ENSVURG00010010594) #21	ENSVURG00010010609 ##22	ENSVURG00010010616 #22	GBX2 (ENSVURG00010010623) #23	ASB18 (ENSVURG00010010631) #24	IQCA1 (ENSVURG00010010657) #25	ENSVURG00010010702	ACKR3 (ENSVURG00010010709) #26	ENSVURG00010010721
Wallaby	MODERN SPECIES	6298																AGAP1 (ENSMEUG00000011729) #22
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000000317	UGT1A1 (ENSSHAG00000001438)	ENSSHAG00000004731	ENSSHAG00000005142 #11	HDAC4 (ENSSHAG00000004439)	TWIST2 (ENSSHAG00000003328)	ENSSHAG00000007519	ENSSHAG00000030077	ENSSHAG00000009352	ENSSHAG00000010002	ENSSHAG00000026060	ENSSHAG00000021326	ENSSHAG00000029850 #20	SH3BP4 (ENSSHAG00000006764) #21	ENSSHAG00000030800	AGAP1 (ENSSHAG00000015980) #22	GBX2 (ENSSHAG00000000902) #23	ASB18 (ENSSHAG00000015617) #24	IQCA1 (ENSSHAG00000014949) #25	ACKR3 (ENSSHAG00000014627) #26	ENSSHAG00000022713	ENSSHAG00000028762	ENSSHAG00000027746	ENSSHAG00000024689	ENSSHAG00000013714	COPS8 (ENSSHAG00000031168) #27	COL6A3 (ENSSHAG00000010297) #28	ENSSHAG00000009549 #29	PRLH (ENSSHAG00000027048) #30	RAB17 (ENSSHAG00000030851) #31	ENSSHAG00000007814 #32
Opossum	DUPLICATION
Opossum	MODERN SPECIES	1	EIF4H (ENSMODG00000013851)	CLIP2 (ENSMODG00000013885)	TWIST2 (ENSMODG00000001412)	ENSMODG00000027430	ASB1 (ENSMODG00000002363)	TRAF3IP1 (ENSMODG00000002477)	ENSMODG00000049860	ENSMODG00000045206	ENSMODG00000038112	ENSMODG00000028175	ENSMODG00000027484	ENSMODG00000041716	ARL4C (ENSMODG00000023112) #20	SH3BP4 (ENSMODG00000002867) #21	ENSMODG00000038703	ENSMODG00000002915 #22	ENSMODG00000007458 #28	ENSMODG00000041638 #28	COPS8 (ENSMODG00000007474) #27	T2R23 (ENSMODG00000007503)	T2R21 (ENSMODG00000042113)	T2R22 (ENSMODG00000023111)	MODO-T2R28 (ENSMODG00000023110)	T2R26 (ENSMODG00000023109)	T2R27 (ENSMODG00000040964)	ACKR3 (ENSMODG00000023108) #26	ASB18 (ENSMODG00000038852) #24	GBX2 (ENSMODG00000007531) #23	ENSMODG00000007538 #22	B3GNT7 (ENSMODG00000041614)	ENSMODG00000002470
Opossum	MODERN SPECIES	1	CAPN10 (ENSMODG00000002704)	ENSMODG00000036608	ENSMODG00000002680	CHRNG (ENSMODG00000002666)	CHRND (ENSMODG00000002646)	ECEL1 (ENSMODG00000002624)	ENSMODG00000002592	ENSMODG00000043268	DIS3L2 (ENSMODG00000025712)	NPPC (ENSMODG00000002518)	COPS7B (ENSMODG00000002502)	PDE6D (ENSMODG00000046234)	NMUR1 (ENSMODG00000002476)	ENSMODG00000002470	B3GNT7 (ENSMODG00000041614)	ENSMODG00000007538 #22	GBX2 (ENSMODG00000007531) #23	ASB18 (ENSMODG00000038852) #24	ACKR3 (ENSMODG00000023108) #26	T2R27 (ENSMODG00000040964)	T2R26 (ENSMODG00000023109)	MODO-T2R28 (ENSMODG00000023110)	T2R22 (ENSMODG00000023111)	T2R21 (ENSMODG00000042113)	T2R23 (ENSMODG00000007503)	COPS8 (ENSMODG00000007474) #27	ENSMODG00000041638 #28	ENSMODG00000007458 #28	ENSMODG00000002915 #22	ENSMODG00000038703	SH3BP4 (ENSMODG00000002867) #21
Platypus	MODERN SPECIES	18	MYL1 (ENSOANG00000006278)	LANCL1 (ENSOANG00000011057)	CPS1 (ENSOANG00000011059)	ERBB4 (ENSOANG00000007021)	ENSOANG00000015675	MREG (ENSOANG00000036014)	FN1 (ENSOANG00000006836)	ATIC (ENSOANG00000005769)	ABCA12 (ENSOANG00000012250)	BARD1 (ENSOANG00000048485)	VWC2L (ENSOANG00000012633)	ENSOANG00000050142	ENSOANG00000029131	IKZF2 (ENSOANG00000009330)	SH3BP4 (ENSOANG00000012552) #21	AGAP1 (ENSOANG00000013415) #22	GBX2 (ENSOANG00000039901) #23	ASB18 (ENSOANG00000002384) #24	ACKR3 (ENSOANG00000003999) #26	COPS8 (ENSOANG00000047446) #27	COL6A3 (ENSOANG00000011917) #28	ENSOANG00000001294	ENSOANG00000014727 #29	RAB17 (ENSOANG00000011498) #31	ENSOANG00000011499 #32	ENSOANG00000000913	ENSOANG00000048771 #34	UBE2F (ENSOANG00000003208) #35	ENSOANG00000021828	ARL4C (ENSOANG00000041538) #20	ENSOANG00000049582 #19
Sauria	ANCESTRAL SPECIES	32	ENSGT00940000155311.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.a.b	ENSGT00940000159677.c.a.a	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.c.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Archosauria	ANCESTRAL SPECIES	6	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.a.b	ENSGT00940000159677.c.a.a	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.c.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000163794	ENSGT00390000008926
Aves	ANCESTRAL SPECIES	8	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.b	ENSGT00940000159677.c.a.b.b	ENSGT00940000159677.c.a.a	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.c.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000163794	ENSGT00390000008926
Neognathae	ANCESTRAL SPECIES	6	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.a.b.b	ENSGT00940000159677.c.a.a.a.b.a	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.a.a.a.b.b.b.a	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.c.a	ENSGT00940000159677.c.b.a.c.b	ENSGT00940000159677.c.a.a.a.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310	ENSGT00940000163794
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.a.a.a.b.b.a	ENSGT00940000159677.c.a.a.a.b.b.b.a	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.c.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310	ENSGT00940000163794
Anatidae	ANCESTRAL SPECIES	10	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.a.a.a.b.b.a.a	ENSGT00940000159677.c.a.b.b	ENSGT00940000159677.c.a.a.a.a	ENSGT00940000159677.c.a.a.a.b.b.b.a	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.c.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310	ENSGT00940000163794
Pink-footed goose	MODERN SPECIES	18													ENSABRG00000022281	TRPM8 (ENSABRG00000022279) #18	ENSABRG00000022277	AGAP1 (ENSABRG00000022257) #22	GBX2 (ENSABRG00000022255) #23	ASB18 (ENSABRG00000022254) #24	IQCA1 (ENSABRG00000022253) #25	ACKR3 (ENSABRG00000022251) #26	COPS8 (ENSABRG00000022248) #27	COL6A3 (ENSABRG00000022232) #28	MLPH (ENSABRG00000022201) #29	PRLH (ENSABRG00000022194) #30	ENSABRG00000022192	RAB17 (ENSABRG00000022190) #31	LRRFIP1 (ENSABRG00000022185) #32	ENSABRG00000022183	RAMP1 (ENSABRG00000022182) #34	UBE2F (ENSABRG00000022177) #35	ENSABRG00000022171
Duck	MODERN SPECIES	25	TWIST2 (ENSAPLG00000000878)	ENSAPLG00000019609	ASB1 (ENSAPLG00000013688)	ENSAPLG00000013889	ENSAPLG00000020501	ENSAPLG00000014141	ENSAPLG00000017911 #11	ENSAPLG00000017509	ENSAPLG00000017238	ENSAPLG00000030959	ENSAPLG00000014719	SH3BP4 (ENSAPLG00000026577) #21	ARL4C (ENSAPLG00000015708) #20	SPP2 (ENSAPLG00000014858) #19	TRPM8 (ENSAPLG00000014898) #18	AGAP1 (ENSAPLG00000005893) #22	ASB18 (ENSAPLG00000027146) #24	IQCA1 (ENSAPLG00000011968) #25	ACKR3 (ENSAPLG00000002306) #26	COPS8 (ENSAPLG00000016947) #27	COL6A3 (ENSAPLG00000005511) #28	MLPH (ENSAPLG00000005150) #29	PRLH (ENSAPLG00000023643) #30	RAB17 (ENSAPLG00000004880) #31	ENSAPLG00000004640 #32	ENSAPLG00000024288	RAMP1 (ENSAPLG00000004363) #34	ENSAPLG00000004341	ENSAPLG00000012522	ENSAPLG00000012593	MREG (ENSAPLG00000012631)
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00940000158212.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.a.d	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000177452	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310	ENSGT00940000163794
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00940000158212.B	ENSGT00940000154486.b.b	ENSGT00940000154486.b.a.a.b	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.a.d	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00950000185272	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000177452	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310	ENSGT00940000163794
Chicken	MODERN SPECIES	36	COL18A1 (ENSGALG00010014162)	AHR1B (ENSGALG00010014105)	AHR2 (ENSGALG00010013824)	NDUFA10 (ENSGALG00010013783)	HDAC4 (ENSGALG00010013697)	TWIST2 (ENSGALG00010013612)	ENSGALG00010015254	ASB1 (ENSGALG00010013494)	TRAF3IP1 (ENSGALG00010015025)	USP40 (ENSGALG00010011106) #11	UGT1A1 (ENSGALG00010011085)	SH3BP4 (ENSGALG00010010719) #21	ARL4C (ENSGALG00010012744) #20	SPP2 (ENSGALG00010012708) #19	TRPM8 (ENSGALG00010012680) #18	AGAP1 (ENSGALG00010012571) #22	GBX2 (ENSGALG00010012489) #23	ASB18 (ENSGALG00010012474) #24	IQCA1 (ENSGALG00010012454) #25	CXCR7 (ENSGALG00010012429) #26	COPS8 (ENSGALG00010012447) #27	COL6A3 (ENSGALG00010012362) #28	MLPH (ENSGALG00010012325) #29	PRLH (ENSGALG00010012236)	RAB17 (ENSGALG00010012215) #31	LRRFIP1 (ENSGALG00010012194) #32	ENSGALG00010012120 #34	UBE2F (ENSGALG00010012100) #35	IFNL3 (ENSGALG00010012050)	ENSGALG00010012045	IFNL3A (ENSGALG00010012030)
Turkey	MODERN SPECIES	27	SLC19A1 (ENSMGAG00000001945)	ENSMGAG00000002118	ENSMGAG00000002128	NDUFA10 (ENSMGAG00000002122)	HDAC4 (ENSMGAG00000002138)	TWIST2 (ENSMGAG00000002218)	ENSMGAG00000018428	ASB1 (ENSMGAG00000002227)	TRAF3IP1 (ENSMGAG00000002236)	ENSMGAG00000002277 #11	ENSMGAG00000002356	ENSMGAG00000017958	SH3BP4 (ENSMGAG00000002524) #21	ENSMGAG00000002620 #19	TRPM8 (ENSMGAG00000002627) #18	AGAP1 (ENSMGAG00000002537) #22	ASB18 (ENSMGAG00000002766) #24	IQCA1 (ENSMGAG00000002818) #25	ACKR3 (ENSMGAG00000016132) #26	COPS8 (ENSMGAG00000002861) #27	COL6A3 (ENSMGAG00000002889) #28	MLPH (ENSMGAG00000003050) #29	RAB17 (ENSMGAG00000003135) #31	PRLH (ENSMGAG00000018152) #30	ENSMGAG00000019302 #32	ENSMGAG00000003145 #32	ENSMGAG00000003218	RAMP1 (ENSMGAG00000003225) #34	ENSMGAG00000003229 #35	ENSMGAG00000003250	ENSMGAG00000003269
Japanese quail	MODERN SPECIES	25	USP40 (ENSCJPG00005012796) #11	ENSCJPG00005012797	ENSCJPG00005012798	ENSCJPG00005012799	ENSCJPG00005012800	ENSCJPG00005012801	ENSCJPG00005012802	ENSCJPG00005012803	ENSCJPG00005012804	ENSCJPG00005012805	SH3BP4 (ENSCJPG00005013057) #21	ARL4C (ENSCJPG00005013058) #20	ENSCJPG00005013062	SPP2 (ENSCJPG00005013063) #19	TRPM8 (ENSCJPG00005013064) #18	AGAP1 (ENSCJPG00005013461) #22	GBX2 (ENSCJPG00005013758) #23	ASB18 (ENSCJPG00005013759) #24	IQCA1 (ENSCJPG00005013760) #25	ACKR3 (ENSCJPG00005013761) #26	COPS8 (ENSCJPG00005013762) #27	NAB1 (ENSCJPG00005013769)	NEMP2 (ENSCJPG00005013770)	MFSD6 (ENSCJPG00005013771)	HIBCH (ENSCJPG00005013772)	ENSCJPG00005013773	MSTN (ENSCJPG00005013774)	PMS1 (ENSCJPG00005013775)	ORMDL1 (ENSCJPG00005013812)	OSGEPL1 (ENSCJPG00005013813)	ASNSD1 (ENSCJPG00005013814)
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000159677.c.a.b.b	ENSGT00940000159677.c.a.a.a.b.a	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.a.a.a.b.b.b.b	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.c.a	ENSGT00940000159677.c.b.a.c.b	ENSGT00940000159677.c.a.a.a.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310	ENSGT00940000163794
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.a	ENSGT00940000159677.c.b.a.c.b	ENSGT00940000159677.c.a.a.a.b.b.b.b	ENSGT00940000159677.c.b.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00960000192637	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000160596.a.a.b	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Great tit	MODERN SPECIES	27	PCBP3 (ENSPMJG00000006345)	ENSPMJG00000006352	COL6A2 (ENSPMJG00000006389)	FTCD (ENSPMJG00000006430)	ENSPMJG00000006435	MCM3AP (ENSPMJG00000006438)	YBEY (ENSPMJG00000006440)	ENSPMJG00000006441	ENSPMJG00000006442	UGT1A1 (ENSPMJG00000006443)	SH3BP4 (ENSPMJG00000006446) #21	ARL4C (ENSPMJG00000006522) #20	SPP2 (ENSPMJG00000006527) #19	ENSPMJG00000006532	TRPM8 (ENSPMJG00000006537) #18	AGAP1 (ENSPMJG00000006600) #22	ENSPMJG00000006646	GBX2 (ENSPMJG00000006648) #23	ASB18 (ENSPMJG00000006649) #24	ENSPMJG00000006652 #25	ACKR3 (ENSPMJG00000006683) #26	COPS8 (ENSPMJG00000006686) #27	ENSPMJG00000006689	ENSPMJG00000006694	COL6A3 (ENSPMJG00000006699) #28	MLPH (ENSPMJG00000006731) #29	PRLH (ENSPMJG00000006757) #30	RAB17 (ENSPMJG00000006759) #31	LRRFIP1 (ENSPMJG00000006762) #32	ENSPMJG00000006782	RAMP1 (ENSPMJG00000006785) #34
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000157440	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000158212.B	ENSGT00950000183022.b	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322	ENSGT00950000183170.b.b	ENSGT00390000007989	ENSGT00940000160270.s.b #18	ENSGT00940000154793.C.ab #22	ENSGT00960000192637	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000160596.a.a.b.a	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Flycatcher	MODERN SPECIES	26	ENSFALG00000024674	ENSFALG00000003949	SLC19A1 (ENSFALG00000003945)	COL18A1 (ENSFALG00000003898)	ENSFALG00000024703	ENSFALG00000028595	ENSFALG00000003870	NDUFA10 (ENSFALG00000003854)	ENSFALG00000025269	HDAC4 (ENSFALG00000003839)	TWIST2 (ENSFALG00000014990)	ASB1 (ENSFALG00000003836)	TRAF3IP1 (ENSFALG00000003831)	ENSFALG00000003826 #11	ENSFALG00000000620 #18	AGAP1 (ENSFALG00000000637) #22	GBX2 (ENSFALG00000015143) #23	ENSFALG00000024037	IQCA1 (ENSFALG00000000643) #25	ACKR3 (ENSFALG00000015156) #26	COPS8 (ENSFALG00000026238) #27	COL6A3 (ENSFALG00000012704) #28	MLPH (ENSFALG00000012767) #29	PRLH (ENSFALG00000027013) #30	RAB17 (ENSFALG00000012783) #31	LRRFIP1 (ENSFALG00000028055) #32	ENSFALG00000023851	RAMP1 (ENSFALG00000025699) #34	ENSFALG00000012804 #35	ENSFALG00000012817	ENSFALG00000012826
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.b	ENSGT00940000154486.b.a.a.b.a	ENSGT00940000154486.b.b	ENSGT00940000158212.B	ENSGT00950000183022.b	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322	ENSGT00950000183170.b.b	ENSGT00390000007989	ENSGT00940000160270.s.b #18	ENSGT00940000154793.C.ab #22	ENSGT00960000192637	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000160596.a.a.b.a	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000177452	ENSGT00940000159224 #34	ENSGT00940000154349 #35
Medium ground finch	MODERN SPECIES	235														ENSGFOG00000006474 #18	ENSGFOG00000006487 #18	AGAP1 (ENSGFOG00000006523) #22	GBX2 (ENSGFOG00000006587) #23	ASB18 (ENSGFOG00000006601) #24	IQCA1 (ENSGFOG00000006631) #25	ACKR3 (ENSGFOG00000006657) #26	COPS8 (ENSGFOG00000006662) #27
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b.b	ENSGT00940000154486.b.a.a.b.a	ENSGT00940000154486.b.b	ENSGT00940000158212.B	ENSGT00950000183022.b	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT01030000234722.a.a.b.b	ENSGT00940000156322	ENSGT00950000183170.b.b	ENSGT00390000007989	ENSGT00940000160270.s.a #18	ENSGT00940000154793.C.ab #22	ENSGT00960000192637	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000160596.a.a.b.a	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000177452	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310
Common canary	MODERN SPECIES	8	HDAC4 (ENSSCAG00000009386)	NDUFA10 (ENSSCAG00000009359)	ENSSCAG00000009324	ENSSCAG00000009313	ENSSCAG00000009304	SLC19A1 (ENSSCAG00000009294)	ENSSCAG00000009284	ENSSCAG00000009257	ENSSCAG00000009229	ENSSCAG00000009223	ENSSCAG00000009219	YBEY (ENSSCAG00000009216)	MCM3AP (ENSSCAG00000009107)	POFUT2 (ENSSCAG00000009071)	TRPM8 (ENSSCAG00000009044) #18	AGAP1 (ENSSCAG00000009030) #22	GBX2 (ENSSCAG00000009011) #23	IQCA1 (ENSSCAG00000008997) #25	ACKR3 (ENSSCAG00000008987) #26	COPS8 (ENSSCAG00000008963) #27	COL6A3 (ENSSCAG00000008871) #28	MLPH (ENSSCAG00000008835) #29	PRLH (ENSSCAG00000008829) #30	RAB17 (ENSSCAG00000008822) #31	ENSSCAG00000008808 #32	ENSSCAG00000008802 #32	RAMP1 (ENSSCAG00000008799) #34	UBE2F (ENSSCAG00000008788) #35	ENSSCAG00000008781	ENSSCAG00000008776	MREG (ENSSCAG00000008744)
Zebra finch	MODERN SPECIES	29	NDUFA10 (ENSTGUG00000003244)	ENSTGUG00000027043	ENSTGUG00000003263	COL18A1 (ENSTGUG00000003295)	SLC19A1 (ENSTGUG00000016708)	ENSTGUG00000003316	ENSTGUG00000003341	COL6A2 (ENSTGUG00000003386)	FTCD (ENSTGUG00000003422)	ENSTGUG00000003453	MCM3AP (ENSTGUG00000003458)	YBEY (ENSTGUG00000003495)	POFUT2 (ENSTGUG00000003497)	ENSTGUG00000019313	TRPM8 (ENSTGUG00000003521) #18	AGAP1 (ENSTGUG00000003583) #22	ENSTGUG00000029585	GBX2 (ENSTGUG00000003625) #23	ACKR3 (ENSTGUG00000003645) #26	COPS8 (ENSTGUG00000003647) #27	ENSTGUG00000024557	COL6A3 (ENSTGUG00000003667) #28	MLPH (ENSTGUG00000003766) #29	PRLH (ENSTGUG00000020810) #30	RAB17 (ENSTGUG00000003786) #31	ENSTGUG00000003797 #32	ENSTGUG00000021528	RAMP1 (ENSTGUG00000003837) #34	UBE2F (ENSTGUG00000003839) #35	ENSTGUG00000003857	ENSTGUG00000003861
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000159677.c.a.b.b	ENSGT00940000159677.c.a.a.a.b.a	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.b.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926
Golden eagle	MODERN SPECIES	22	NDUFA10 (ENSACCG00020012200)	HDAC4 (ENSACCG00020012255)	TWIST2 (ENSACCG00020012284)	ASB1 (ENSACCG00020012311)	TRAF3IP1 (ENSACCG00020012354)	ENSACCG00020012407	USP40 (ENSACCG00020012471) #11	ENSACCG00020012585	ENSACCG00020012631	ENSACCG00020012646	ENSACCG00020012664	SH3BP4 (ENSACCG00020012689) #21	ARL4C (ENSACCG00020012720) #20	SPP2 (ENSACCG00020012732) #19	TRPM8 (ENSACCG00020013728) #18	AGAP1 (ENSACCG00020014325) #22	GBX2 (ENSACCG00020014381) #23	ENSACCG00020014394 #24	IQCA1 (ENSACCG00020014455) #25	ACKR3 (ENSACCG00020014526) #26	COPS8 (ENSACCG00020014535) #27	COL6A3 (ENSACCG00020014569) #28	ENSACCG00020014628	MLPH (ENSACCG00020014641) #29	PRLH (ENSACCG00020014655) #30	RAB17 (ENSACCG00020014666) #31	LRRFIP1 (ENSACCG00020014774) #32	RAMP1 (ENSACCG00020014879) #34	UBE2F (ENSACCG00020014904) #35	ENSACCG00020014939	ENSACCG00020014957
Kakapo	MODERN SPECIES	22	ENSSHBG00005021276	ENSSHBG00005021277	ENSSHBG00005021278	ENSSHBG00005021279	ENSSHBG00005021280	ENSSHBG00005021281	ENSSHBG00005021282	ENSSHBG00005021283	ENSSHBG00005021284	ENSSHBG00005021285	SH3BP4 (ENSSHBG00005021287) #21	ENSSHBG00005021288	ARL4C (ENSSHBG00005021289) #20	SPP2 (ENSSHBG00005021290) #19	TRPM8 (ENSSHBG00005021292) #18	AGAP1 (ENSSHBG00005021297) #22	GBX2 (ENSSHBG00005021301) #23	ASB18 (ENSSHBG00005021302) #24	ENSSHBG00005000880 #25	ACKR3 (ENSSHBG00005010086) #26	COPS8 (ENSSHBG00005010183) #27	ENSSHBG00005010204	COL6A3 (ENSSHBG00005010259) #28	MLPH (ENSSHBG00005010355) #29	PRLH (ENSSHBG00005010384) #30	RAB17 (ENSSHBG00005010406) #31	LRRFIP1 (ENSSHBG00005010455) #32	ENSSHBG00005010547	ENSSHBG00005010594	ENSSHBG00005010641	ZC3H15 (ENSSHBG00005010709)
African ostrich	MODERN SPECIES	1002																AGAP1 (ENSSCUG00000013642) #22	ENSSCUG00000013641 #23	IQCA1 (ENSSCUG00000013640) #25	ACKR3 (ENSSCUG00000013638) #26	COPS8 (ENSSCUG00000013636) #27	COL6A3 (ENSSCUG00000013629) #28	MLPH (ENSSCUG00000013624) #29	ENSSCUG00000013614 #32	ENSSCUG00000013610	UBE2F (ENSSCUG00000013609) #35	ENSSCUG00000013607	MREG (ENSSCUG00000013599)	FN1 (ENSSCUG00000013570)	ATIC (ENSSCUG00000013522)
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005005331	ENSCPRG00005005355	NDUFA10 (ENSCPRG00005005367)	HDAC4 (ENSCPRG00005005400)	TWIST2 (ENSCPRG00005005461)	ENSCPRG00005005465	ASB1 (ENSCPRG00005005514)	TRAF3IP1 (ENSCPRG00005005553)	ENSCPRG00005005577	USP40 (ENSCPRG00005005587) #11	ENSCPRG00005005603	ARL4C (ENSCPRG00005005642) #20	SPP2 (ENSCPRG00005005661) #19	TRPM8 (ENSCPRG00005005682) #18	ENSCPRG00005005704	AGAP1 (ENSCPRG00005005814) #22	GBX2 (ENSCPRG00005005853) #23	ASB18 (ENSCPRG00005005897) #24	IQCA1 (ENSCPRG00005005928) #25	ACKR3 (ENSCPRG00005005948) #26	ENSCPRG00005005949	COPS8 (ENSCPRG00005005990) #27	COL6A3 (ENSCPRG00005006067) #28	MLPH (ENSCPRG00005006256) #29	PRLH (ENSCPRG00005006285) #30	RAB17 (ENSCPRG00005006290) #31	LRRFIP1 (ENSCPRG00005006318) #32	ENSCPRG00005006347	MCM3AP (ENSCPRG00005006390)	YBEY (ENSCPRG00005006741)	POFUT2 (ENSCPRG00005006796)
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.a	ENSGT00940000163820	ENSGT00940000159677.c.a.b	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.a.a	ENSGT00940000159677.c.b.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00520000055666.b
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00720000108822	ENSGT00940000178952	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.a	ENSGT00940000163820.j	ENSGT00940000163820.i	ENSGT00940000159677.c.a.b	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.a.a	ENSGT00940000159677.c.b.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00520000055666.b
Emydidae	ANCESTRAL SPECIES	70	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.a	ENSGT00940000163820.j	ENSGT00940000163820.i	ENSGT00940000159677.c.a.b	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.a.a	ENSGT00940000159677.c.b.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00940000156462.B ##28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00520000055666.b
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	80											ENSTMTG00000006134	ENSTMTG00000006198 #20	ENSTMTG00000006207 #19	ENSTMTG00000006243 #18	ENSTMTG00000006356 #18	ENSTMTG00000006383 #22	ENSTMTG00000006556 #23	ENSTMTG00000006575 #24	ENSTMTG00000006704 #25	ENSTMTG00000006807 #26	ENSTMTG00000006818 #27	ENSTMTG00000006841 #28	ENSTMTG00000006877 #28	ENSTMTG00000007184 #29	ENSTMTG00000007218 #29	ENSTMTG00000007250 #30	ENSTMTG00000007269 #31	ENSTMTG00000007303 #32	ENSTMTG00000007382 #32
Three-toed box turtle	MODERN SPECIES	81												ENSTMTG00000007399	ENSTMTG00000007415 #20	ENSTMTG00000007423 #19	ENSTMTG00000007492 #18	ENSTMTG00000008118 #22	ENSTMTG00000008451 #23	ENSTMTG00000008470 #24	ENSTMTG00000008559 #25	ENSTMTG00000008595 #26	ENSTMTG00000008598 #27	ENSTMTG00000008620 #28	ENSTMTG00000008756 ##28	ENSTMTG00000008776 #29	ENSTMTG00000008817 #30	ENSTMTG00000008831 #31	ENSTMTG00000008868 #32	ENSTMTG00000008933 #32	ENSTMTG00000008957	ENSTMTG00000002998	ENSTMTG00000003011 #35
painted turtle	MODERN SPECIES	808	ASB1 (ENSCPBG00000025369)	TRAF3IP1 (ENSCPBG00000025359)	ENSCPBG00000025339	ENSCPBG00000025323 #11	ENSCPBG00000025316	ENSCPBG00000025306	ENSCPBG00000025303	ENSCPBG00000025299	ENSCPBG00000025298	ENSCPBG00000024851	SH3BP4 (ENSCPBG00000024719) #21	ARL4C (ENSCPBG00000024707) #20	ENSCPBG00000024701	ENSCPBG00000024691 #19	TRPM8 (ENSCPBG00000024488) #18	AGAP1 (ENSCPBG00000023256) #22	GBX2 (ENSCPBG00000022875) #23	ASB18 (ENSCPBG00000022867) #24	ENSCPBG00000022848	IQCA1 (ENSCPBG00000022820) #25	ACKR3 (ENSCPBG00000022793) #26
Testudinidae	ANCESTRAL SPECIES	67	ENSGT00530000063273.b.b	ENSGT00940000157267 #11	ENSGT00940000159677.c.b.a.c.a	ENSGT00940000163820.j.b	ENSGT00940000163820.j.a	ENSGT00940000163820.i	ENSGT00940000159677.c.a.b	ENSGT00940000159677.c.a.a	ENSGT00940000159677.c.b.a.d	ENSGT00940000159677.c.b.b	ENSGT00390000013151.a.a #21	ENSGT00950000185272	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30
Abingdon island giant tortoise	MODERN SPECIES	2134																ENSCABG00000002606 #22	GBX2 (ENSCABG00000002605) #23	ASB18 (ENSCABG00000002604) #24	IQCA1 (ENSCABG00000002602) #25	ACKR3 (ENSCABG00000002601) #26	ENSCABG00000002600	COPS8 (ENSCABG00000002598) #27	ENSCABG00000002596	COL6A3 (ENSCABG00000002574) #28	ENSCABG00000002568 #29	ENSCABG00000002567 #29	ENSCABG00000002563 #30
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005017074	ENSGEVG00005017079	ENSGEVG00005017103	ENSGEVG00005017113	ENSGEVG00005004261	ENSGEVG00005004802	ENSGEVG00005004819	ENSGEVG00005004844	ENSGEVG00005004862 #30	ENSGEVG00005004939	ARL4C (ENSGEVG00005004953) #20	ENSGEVG00005004971	SPP2 (ENSGEVG00005004990) #19	ENSGEVG00005005129 #18	ENSGEVG00005005275 #18	AGAP1 (ENSGEVG00005005498) #22	GBX2 (ENSGEVG00005006397) #23	ASB18 (ENSGEVG00005006433) #24	IQCA1 (ENSGEVG00005006547) #25	ACKR3 (ENSGEVG00005006678) #26	COPS8 (ENSGEVG00005006688) #27	COL6A3 (ENSGEVG00005006817) #28	ENSGEVG00005007206 #29	ENSGEVG00005007229 #29	ENSGEVG00005007264 #30	ENSGEVG00005007320	SLC19A1 (ENSGEVG00005007576)	ENSGEVG00005007621	ENSGEVG00005007665	ENSGEVG00005007725	ENSGEVG00005007782
Chinese turtle	MODERN SPECIES	1375										HDAC4 (ENSPSIG00000018148)	NDUFA10 (ENSPSIG00000018143)	ENSPSIG00000018136	ENSPSIG00000001338	TRPM8 (ENSPSIG00000018097) #18	ENSPSIG00000001331	AGAP1 (ENSPSIG00000017950) #22	GBX2 (ENSPSIG00000017940) #23	ENSPSIG00000001316	ASB18 (ENSPSIG00000017927) #24	IQCA1 (ENSPSIG00000017781) #25	ACKR3 (ENSPSIG00000017761) #26	COPS8 (ENSPSIG00000017494) #27	COL6A3 (ENSPSIG00000017427) #28	MLPH (ENSPSIG00000017140) #29	PRLH (ENSPSIG00000017065) #30	RAB17 (ENSPSIG00000016995) #31	LRRFIP1 (ENSPSIG00000016774) #32	ENSPSIG00000016767	RAMP1 (ENSPSIG00000016764) #34	UBE2F (ENSPSIG00000016759) #35	ENSPSIG00000016742
Lepidosauria	ANCESTRAL SPECIES	7					ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000178952	ENSGT00940000159677.c.b.a.b	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000163794	ENSGT00390000008926
tuatara	MODERN SPECIES	1003															ENSSPUG00000015810 ##22	ENSSPUG00000015820 #22
Episquamata	ANCESTRAL SPECIES		ENSGT00940000159224 #34	ENSGT00940000165690	ENSGT00530000063564.b #32	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000163820	ENSGT00940000159677.c.b.a.b	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT00520000055666.b
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000159224 #34	ENSGT00940000165690	ENSGT00530000063564.b #32	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000163820	ENSGT00940000159677.c.b.a.b	ENSGT00940000159677.c.b.b	ENSGT00940000159677.c.b.a.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00940000162768.B	ENSGT00950000183546	ENSGT00940000181461	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT00520000055666.b
Common wall lizard	MODERN SPECIES		FASTKD2 (ENSPMRG00000000149)	KLF7 (ENSPMRG00000000188)	CREB1 (ENSPMRG00000000233)	METTL21A (ENSPMRG00000000269)	ENSPMRG00000000296	ENSPMRG00000000317	ENSPMRG00000000354	PLEKHM3 (ENSPMRG00000000374)	C2orf80 (ENSPMRG00000000402)	IDH1 (ENSPMRG00000000420)	PIKFYVE (ENSPMRG00000000782)	PTH2R (ENSPMRG00000001701)	ARL4C (ENSPMRG00000001763) #20	ENSPMRG00000001769	TRPM8 (ENSPMRG00000001779) #18	AGAP1 (ENSPMRG00000001831) #22	ENSPMRG00000001891	GBX2 (ENSPMRG00000001897) #23	ASB18 (ENSPMRG00000001902) #24	IQCA1 (ENSPMRG00000001911) #25	ENSPMRG00000001932	COPS8 (ENSPMRG00000001949) #27	MLPH (ENSPMRG00000001979) #29	ENSPMRG00000002010	RAB17 (ENSPMRG00000002014) #31	ENSPMRG00000002029	ENSPMRG00000002049	ENSPMRG00000002055	COL6A2 (ENSPMRG00000002061)	FTCD (ENSPMRG00000002078)	SPATC1L (ENSPMRG00000002088)
Argentine black and white tegu	MODERN SPECIES	12	ENSSMRG00000020849	ENSSMRG00000020850	ENSSMRG00000020851	ENSSMRG00000020852	ENSSMRG00000020868	ENSSMRG00000020941	ENSSMRG00000020942	ENSSMRG00000020943	ENSSMRG00000020945	ENSSMRG00000020946	SH3BP4 (ENSSMRG00000020950) #21	ENSSMRG00000020951	ARL4C (ENSSMRG00000020952) #20	ENSSMRG00000020954 #18	ENSSMRG00000020956 #18	AGAP1 (ENSSMRG00000020957) #22	GBX2 (ENSSMRG00000020958) #23	ASB18 (ENSSMRG00000020959) #24	IQCA1 (ENSSMRG00000020961) #25	ACKR3 (ENSSMRG00000020962) #26	COPS8 (ENSSMRG00000020967) #27	COL6A3 (ENSSMRG00000020968) #28	MLPH (ENSSMRG00000020969) #29	PRLH (ENSSMRG00000020970) #30	RAB17 (ENSSMRG00000020971) #31	ENSSMRG00000020972	ENSSMRG00000020973	ENSSMRG00000020974	COL6A2 (ENSSMRG00000020975)	FTCD (ENSSMRG00000020977)	SPATC1L (ENSSMRG00000020978)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000154349 #35	ENSGT00940000159224 #34	ENSGT00940000165690	ENSGT00530000063564.b #32	ENSGT00940000157440	ENSGT00940000165503	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000157267 #11	ENSGT00940000159677.d	ENSGT00940000159677.c.b.a.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00940000160270 #18	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00940000161839 #31	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT00520000055666.b
Lizard	MODERN SPECIES		PPIL3 (ENSACAG00000017026)	NIF3L1 (ENSACAG00000017036)	ENSACAG00000042635	ENSACAG00000008984	HDAC4 (ENSACAG00000009425)	TWIST2 (ENSACAG00000009715)	ASB1 (ENSACAG00000009718)	TRAF3IP1 (ENSACAG00000009729)	ENSACAG00000009760 #11	ENSACAG00000022125	ENSACAG00000041540	SH3BP4 (ENSACAG00000010071) #21	ENSACAG00000010087 #20	ENSACAG00000010093 #18	ENSACAG00000035836 #18	AGAP1 (ENSACAG00000010229) #22	GBX2 (ENSACAG00000010361) #23	ASB18 (ENSACAG00000010384) #24	IQCA1 (ENSACAG00000028076) #25	ACKR3 (ENSACAG00000010490) #26	COPS8 (ENSACAG00000010495) #27	PELI1 (ENSACAG00000040221)	VPS54 (ENSACAG00000006033)	UGP2 (ENSACAG00000005960)	MDH1 (ENSACAG00000005865)	ENSACAG00000005852	WDPCP (ENSACAG00000005832)	OTX1 (ENSACAG00000005818)	EHBP1 (ENSACAG00000005744)	ENSACAG00000037825	ENSACAG00000037410
Elapidae	ANCESTRAL SPECIES		ENSGT00940000157295.g	ENSGT00390000004553	ENSGT00940000155126	ENSGT00940000154349 #35	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000157440	ENSGT00940000165503	ENSGT00940000159677.c.b.b	ENSGT00940000178952.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00940000160270 #18	ENSGT00970000197610.A	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00950000185272	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT00520000055666.b	ENSGT00390000011570.t
Indian cobra	MODERN SPECIES		ENSNNAG00000003847	ENSNNAG00000003837	ATIC (ENSNNAG00000017270)	FN1 (ENSNNAG00000017132)	UBE2F (ENSNNAG00000017117) #35	LRRFIP1 (ENSNNAG00000016996) #32	RAMP1 (ENSNNAG00000016973) #34	HDAC4 (ENSNNAG00000016586)	ENSNNAG00000016536	UGT1A1 (ENSNNAG00000016458)	ENSNNAG00000016434	SH3BP4 (ENSNNAG00000016430) #21	ARL4C (ENSNNAG00000016424) #20	TRPM8 (ENSNNAG00000014583) #18	ENSNNAG00000014442	ENSNNAG00000013714 #22	GBX2 (ENSNNAG00000013633) #23	IQCA1 (ENSNNAG00000013491) #25	ACKR3 (ENSNNAG00000013475) #26	COPS8 (ENSNNAG00000013456) #27	COL6A3 (ENSNNAG00000013218) #28	MLPH (ENSNNAG00000013124) #29	ENSNNAG00000013103	ENSNNAG00000013062	ENSNNAG00000012914	COL6A2 (ENSNNAG00000012890)	FTCD (ENSNNAG00000012835)	SPATC1L (ENSNNAG00000012819)	LSS (ENSNNAG00000010089)	MCM3AP (ENSNNAG00000009601)	YBEY (ENSNNAG00000009555)
Elapidae_a	ANCESTRAL SPECIES	39	ENSGT00940000157295.g	ENSGT00390000004553	ENSGT00940000155126	ENSGT00940000154349 #35	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000157440	ENSGT00940000165503	ENSGT00940000159677.c.b.b.c	ENSGT00940000178952.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00940000160270 #18	ENSGT00970000197610.A	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00950000185272	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT00520000055666.b	ENSGT00390000011570.t
Blue-lipped sea krait	MODERN SPECIES	8805																ENSLLTG00000016987 #22
Acanthophiinae	ANCESTRAL SPECIES	39	ENSGT00940000157295.g	ENSGT00390000004553	ENSGT00940000155126	ENSGT00940000154349 #35	ENSGT00530000063564.b #32	ENSGT00940000165690	ENSGT00940000159224 #34	ENSGT00940000157440	ENSGT00940000165503	ENSGT00940000159677.c.b.b.c	ENSGT00940000178952.b	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00940000160270 #18	ENSGT00970000197610.A	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489.a #30	ENSGT00950000185272	ENSGT00940000162768.B	ENSGT00940000163601	ENSGT01030000235116	ENSGT00940000155682	ENSGT00390000005581.a	ENSGT00520000055666.b	ENSGT00390000011570.t
Eastern brown snake	MODERN SPECIES	36	ABCA12 (ENSPTXG00000007148)	ATIC (ENSPTXG00000007147)	ENSPTXG00000007146	FN1 (ENSPTXG00000007144)	UBE2F (ENSPTXG00000007143) #35	LRRFIP1 (ENSPTXG00000007138) #32	RAMP1 (ENSPTXG00000007137) #34	HDAC4 (ENSPTXG00000006466)	ENSPTXG00000006459	UGT1A1 (ENSPTXG00000006248)	ENSPTXG00000006247	SH3BP4 (ENSPTXG00000006246) #21	ARL4C (ENSPTXG00000006245) #20	TRPM8 (ENSPTXG00000003411) #18	ENSPTXG00000003401	AGAP1 (ENSPTXG00000000614) #22	GBX2 (ENSPTXG00000000408) #23	ENSPTXG00000000405	IQCA1 (ENSPTXG00000000336) #25	ACKR3 (ENSPTXG00000000332) #26	COPS8 (ENSPTXG00000000311) #27	COL6A3 (ENSPTXG00000000271) #28	ENSPTXG00000000246	ENSPTXG00000000237 ##29	ENSPTXG00000000211	ENSPTXG00000000194	ENSPTXG00000000142	ENSPTXG00000003775	COL6A2 (ENSPTXG00000003773)	FTCD (ENSPTXG00000003772)	SPATC1L (ENSPTXG00000003771)
Mainland tiger snake	MODERN SPECIES	110										ENSNSUG00000012728	ENSNSUG00000012729	SH3BP4 (ENSNSUG00000012730) #21	ARL4C (ENSNSUG00000012731) #20	ENSNSUG00000012732 #18	ENSNSUG00000012799 #18	AGAP1 (ENSNSUG00000012806) #22	GBX2 (ENSNSUG00000012809) #23	IQCA1 (ENSNSUG00000012810) #25	ENSNSUG00000012811	ACKR3 (ENSNSUG00000012812) #26	COPS8 (ENSNSUG00000012813) #27	ENSNSUG00000012830 #28	ENSNSUG00000012831 #28	MLPH (ENSNSUG00000012832) #29	PRLH (ENSNSUG00000012876) #30	ENSNSUG00000012877	ENSNSUG00000012878	ENSNSUG00000012881	COL6A2 (ENSNSUG00000012883)	FTCD (ENSNSUG00000012884)	ENSNSUG00000012885
Amniota	DUPLICATION
Amniota	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Cryptodira	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Abingdon island giant tortoise	MODERN SPECIES	594																ENSCABG00000002350 ##22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
tuatara	MODERN SPECIES	1003																ENSSPUG00000015810 ##22	ENSSPUG00000015820 #22
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Primates	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Macaca	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000157267 #11	ENSGT00940000166673.d.a.a.a.a.b	ENSGT00940000162757.f #14	ENSGT00940000159677.d	ENSGT00940000161309 #15	ENSGT00390000005575 #16	ENSGT00950000182965.b.eb.a #17	ENSGT00940000160270 #18	ENSGT00390000009001 #19	ENSGT00940000161627.a.a.a.b.b.b.a.a.b.c.a.b	ENSGT01080000257484.C	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.a.a.b.a.a.a.a	ENSGT01100000263539.b.a.a.a.a.a.a.a.b.b.b.a.b.a.a.a	ENSGT00940000154793.C.`b.a ##22	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00390000000977 #27	ENSGT00910000147210	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b.e.a #32	ENSGT00390000016508 #33	ENSGT00940000159224 #34	ENSGT00940000154349.m.a.c #35
Crab-eating macaque	MODERN SPECIES	3	USP40 (ENSMFAG00000036495) #11	UGT1A8 (ENSMFAG00000042349)	ENSMFAG00000056186	ENSMFAG00000039060 #14	MROH2A (ENSMFAG00000045490) #15	HJURP (ENSMFAG00000000886) #16	ENSMFAG00000050196 #17	TRPM8 (ENSMFAG00000043208) #18	SPP2 (ENSMFAG00000044433) #19	ENSMFAG00000062028	ENSMFAG00000049398	ENSMFAG00000045232 #20	SH3BP4 (ENSMFAG00000038422) #21	ENSMFAG00000062617	ENSMFAG00000056989	ENSMFAG00000050981 ##22	ENSMFAG00000038629 #22	GBX2 (ENSMFAG00000031863) #23	ASB18 (ENSMFAG00000042948) #24	IQCA1 (ENSMFAG00000046217) #25	ACKR3 (ENSMFAG00000029542) #26	COPS8 (ENSMFAG00000043944) #27	ENSMFAG00000030220	COL6A3 (ENSMFAG00000043048) #28	MLPH (ENSMFAG00000040090) #29	PRLH (ENSMFAG00000043339) #30	RAB17 (ENSMFAG00000036950) #31	ENSMFAG00000035972 #32	RBM44 (ENSMFAG00000002416) #33	RAMP1 (ENSMFAG00000032812) #34	ENSMFAG00000035899 #35
Marsupialia	ANCESTRAL SPECIES	31	ENSGT00940000161997.a	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000159677.d	ENSGT00940000163820	ENSGT00940000163976	ENSGT00940000157267 #11	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000156322.g	ENSGT00940000154793.C.`b.a ##22	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT01100000263477.A.b.a.a.a.a.a.b.b	ENSGT01100000263477.A.b.a.a.a.a.b	ENSGT01100000263477.A.b.a.a.a.a.a.a	ENSGT00390000000977 #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000160270 #18	ENSGT00940000159677.d	ENSGT00940000163820	ENSGT00940000163976	ENSGT00940000157267 #11	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000161996	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000160639 #20	ENSGT00390000013151.a.a #21	ENSGT00940000156322.g	ENSGT00940000154793.C.`b.a ##22	ENSGT00940000154793.C.ab #22	ENSGT00940000154365.a.b #23	ENSGT00940000162056 #24	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT01100000263477.A.b.a.a.a.a.a.b.b	ENSGT01100000263477.A.b.a.a.a.a.b	ENSGT01100000263477.A.b.a.a.a.a.a.a.b	ENSGT00390000000977.b #27	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b.a #29	ENSGT00390000005489 #30	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00390000016508 #33
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.a ##22
Common wonbat	MODERN SPECIES	787							TWIST2 (ENSVURG00010010490)	ASB1 (ENSVURG00010010493)	ENSVURG00010010502	ENSVURG00010010534	ENSVURG00010010536	ENSVURG00010010549	ENSVURG00010010564	ARL4C (ENSVURG00010010587) #20	SH3BP4 (ENSVURG00010010594) #21	ENSVURG00010010609 ##22	ENSVURG00010010616 #22	GBX2 (ENSVURG00010010623) #23	ASB18 (ENSVURG00010010631) #24	IQCA1 (ENSVURG00010010657) #25	ENSVURG00010010702	ACKR3 (ENSVURG00010010709) #26	ENSVURG00010010721
Amniota	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.b ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.b ##22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000154793.C.`b.b ##22
tuatara	MODERN SPECIES	1357																ENSSPUG00000014394 ##22
Anura	ANCESTRAL SPECIES	7	ENSGT00950000182997.a.b.b.a	ENSGT00940000160683	ENSGT00390000016151	ENSGT00940000157440	ENSGT00940000165503	ENSGT00940000153969.b	ENSGT00720000108822	ENSGT00530000063273.b.b	ENSGT00940000159677.c.a	ENSGT00940000159677.c.b.a.f	ENSGT00940000159677.c.b.a.e.a	ENSGT00390000013151.a.a #21	ENSGT00940000160639 #20	ENSGT00390000009001 #19	ENSGT00940000160270 #18	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00940000166277	ENSGT00940000171532.a	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00950000185272	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000177452	ENSGT00940000159224 #34	ENSGT00940000154349 #35	ENSGT00940000163794.y	ENSGT00940000166348
Frog	MODERN SPECIES	9	ENSXETG00000045433	bard1 (ENSXETG00000014241)	abca12 (ENSXETG00000014244)	ENSXETG00000038463	atic (ENSXETG00000025087)	fn1 (ENSXETG00000010898)	mreg (ENSXETG00000010902)	XB5811292 [provisional] (ENSXETG00000031863)	ube2f (ENSXETG00000010905) #35	ramp1 (ENSXETG00000010906) #34	ugt1a6 (ENSXETG00000004890)	sh3bp4 (ENSXETG00000010910) #21	arl4c (ENSXETG00000043177) #20	trpm8b (ENSXETG00000003271) #18	trpm8 (ENSXETG00000026873) #18	agap1 (ENSXETG00000003280) #22	gbx2.1 (ENSXETG00000003290) #23	gbx2.2 (ENSXETG00000003293) #23	asb18 (ENSXETG00000029996)	iqca1 (ENSXETG00000032973) #25	ackr3 (ENSXETG00000039232) #26	ENSXETG00000035869	col6a3 (ENSXETG00000031229) #28	mlph (ENSXETG00000032232) #29	ENSXETG00000037922	lrrfip1 (ENSXETG00000032269) #32	ENSXETG00000041199	usp40 (ENSXETG00000004875) #11	ENSXETG00000042977	ENSXETG00000047014	traf3ip1 (ENSXETG00000004877)
Leishan spiny toad	MODERN SPECIES	10	ASB1 (ENSLLEG00000016008)	TRAF3IP1 (ENSLLEG00000015779)	ENSLLEG00000019265 #11	ENSLLEG00000019208	ENSLLEG00000019128	ENSLLEG00000019102	ENSLLEG00000019051	ENSLLEG00000018963	SH3BP4 (ENSLLEG00000018882) #21	ARL4C (ENSLLEG00000018830) #20	ENSLLEG00000018774	ENSLLEG00000018671 #19	ENSLLEG00000018652	TRPM8 (ENSLLEG00000017415) #18	ENSLLEG00000017294	AGAP1 (ENSLLEG00000015852) #22	GBX2 (ENSLLEG00000015780) #23	ENSLLEG00000015687	ENSLLEG00000015634	IQCA1 (ENSLLEG00000015314) #25	ACKR3 (ENSLLEG00000015274) #26	ENSLLEG00000015073	ENSLLEG00000015044	ENSLLEG00000015010	ENSLLEG00000014921 #28	ENSLLEG00000014817 #28	ENSLLEG00000014750 #28	ENSLLEG00000014690 #28	MLPH (ENSLLEG00000013914) #29	ENSLLEG00000013829	ENSLLEG00000013714 #31
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	730											ARL4C (ENSLACG00000015350) #20	ENSLACG00000022501 #19	TRPM8 (ENSLACG00000014130) #18	ENSLACG00000013782	ENSLACG00000011900	ENSLACG00000010100 #22	ENSLACG00000006421 #22	GBX2 (ENSLACG00000005440) #23	ASB18 (ENSLACG00000004254) #24	IQCA1 (ENSLACG00000000391) #25
Coelacanth	MODERN SPECIES	730										ARL4C (ENSLACG00000015350) #20	ENSLACG00000022501 #19	TRPM8 (ENSLACG00000014130) #18	ENSLACG00000013782	ENSLACG00000011900	ENSLACG00000010100 #22	ENSLACG00000006421 #22	GBX2 (ENSLACG00000005440) #23	ASB18 (ENSLACG00000004254) #24	IQCA1 (ENSLACG00000000391) #25
Actinopterygii	ANCESTRAL SPECIES	142	ENSGT00390000007989	ENSGT00940000155752	ENSGT00940000157295	ENSGT00940000156532	ENSGT00720000108792.B	ENSGT00940000157137	ENSGT00940000154695	ENSGT00940000157192	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a	ENSGT00940000157652	ENSGT00530000063688.a	ENSGT00940000156597.b	ENSGT00640000091496	ENSGT00390000001447	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Reedfish	MODERN SPECIES	16	sec22a (ENSECRG00000017158)	adcy5 (ENSECRG00000017181)	hacd2 (ENSECRG00000017217)	stam2 (ENSECRG00000017249)	cacnb4a (ENSECRG00000017312)	arl5a (ENSECRG00000017434)	NEB (ENSECRG00000017571)	rif1 (ENSECRG00000017982)	tnfaip6 (ENSECRG00000018046)	lancl1 (ENSECRG00000018081)	mylz3 (ENSECRG00000018120)	acadl (ENSECRG00000018174)	ENSECRG00000018217	UNC80 (ENSECRG00000018287)	rpe (ENSECRG00000018435)	AGAP1 (ENSECRG00000018490) #22	gbx2 (ENSECRG00000018677) #23	ASB18 (ENSECRG00000018700) #24	iqca1 (ENSECRG00000018772) #25	ackr3b (ENSECRG00000018909) #26	trim63a (ENSECRG00000018917)	cops8 (ENSECRG00000018930)	ENSECRG00000018944	ENSECRG00000018994 ##28	MLPH (ENSECRG00000019106) #29	ENSECRG00000019167
Neopterygii	ANCESTRAL SPECIES	63	ENSGT00390000007989	ENSGT00940000155752	ENSGT00940000157295	ENSGT00940000156532	ENSGT00720000108792.B	ENSGT00940000157137	ENSGT00940000154695	ENSGT00940000157192	ENSGT00530000063186.b.b	ENSGT01030000234570.d.a	ENSGT00940000157652	ENSGT00530000063688.a	ENSGT00940000156597.b	ENSGT00640000091496	ENSGT00390000001447	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00940000166042	ENSGT00940000166277	ENSGT00940000156462.B.d ##28	ENSGT00940000156462.B.c.a ##28	ENSGT00940000156462.B.c.b ##28	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b #29	ENSGT00940000161839 #31	ENSGT00530000063564.b #32	ENSGT00940000155282	ENSGT00940000160335	ENSGT00940000165788
Spotted gar	MODERN SPECIES	650	pofut2 (ENSLOCG00000004410)	MYO1B (ENSLOCG00000004425)	ABCA12 (ENSLOCG00000004451)	BARD1 (ENSLOCG00000004470)	vwc2l (ENSLOCG00000004485)	IKZF2 (ENSLOCG00000004501)	erbb4a (ENSLOCG00000004529)	CPS1 (ENSLOCG00000004580)	lancl1 (ENSLOCG00000004634)	mylz3 (ENSLOCG00000004651)	acadl (ENSLOCG00000004680)	KANSL1L (ENSLOCG00000004691)	MAP2 (ENSLOCG00000004706)	UNC80 (ENSLOCG00000004735)	rpe (ENSLOCG00000004757)	AGAP1 (ENSLOCG00000004775) #22	gbx2 (ENSLOCG00000004803) #23	ENSLOCG00000004813	iqca1 (ENSLOCG00000004845) #25	ackr3b (ENSLOCG00000004865) #26	cops8 (ENSLOCG00000004879)	COL6A3 (ENSLOCG00000004896) ##28	mlpha (ENSLOCG00000004912) #29	prlh (ENSLOCG00000004947)	RAB17 (ENSLOCG00000004961) #31	LRRFIP1 (ENSLOCG00000004973) #32	DNAH7 (ENSLOCG00000005048)	slc39a10 (ENSLOCG00000005081)	tmeff2a (ENSLOCG00000005097)	cavin2b (ENSLOCG00000005117)	nabp1a (ENSLOCG00000005133)
Osteoglossocephalai	ANCESTRAL SPECIES	196																ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b #26	ENSGT00940000166042	ENSGT00940000166277	ENSGT00940000156462.B.c.a.b ##28	ENSGT00940000156462.B.c.b ##28	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000156462.C #28	ENSGT00950000183138.a.b.r.b #29	ENSGT00940000161839 #31	ENSGT00530000063564.b.b #32	ENSGT00940000158493	ENSGT00390000004145.b
Osteoglossiformes	ANCESTRAL SPECIES	278																ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000158974.bb.a	ENSGT01090000260051.b.b #26	ENSGT00940000166277	ENSGT00940000156462.B.d ##28	ENSGT00940000156462.B.c.a.b ##28	ENSGT00940000156462.B.c.b ##28	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00530000063564.b.b #32	ENSGT00940000158493	ENSGT00390000016484	ENSGT00390000005550	ENSGT00390000005581.b	ENSGT00940000155812
Asian bonytongue	MODERN SPECIES	16	ccnyl1 (ENSSFOG00015026340)	dbr1 (ENSSFOG00015011410)	MAP2 (ENSSFOG00015011443)	ENSSFOG00015028319	UNC80 (ENSSFOG00015011511)	ENSSFOG00015025204	ENSSFOG00015011879	slc12a8 (ENSSFOG00015011903)	znf148 (ENSSFOG00015025594)	ENSSFOG00015011962	OSBPL11 (ENSSFOG00015011979)	LMLN (ENSSFOG00015024233)	nifk (ENSSFOG00015031391)	si:dkey-91i10.2 (ENSSFOG00015012176)	rpe (ENSSFOG00015012191)	AGAP1 (ENSSFOG00015012229) #22	gbx2 (ENSSFOG00015029021) #23	ENSSFOG00015012322	ackr3b (ENSSFOG00015012333) #26	ENSSFOG00015032418	cops8 (ENSSFOG00015012345)	ENSSFOG00015027129 ##28	ENSSFOG00015007172 ##28	ENSSFOG00015007218 ##28	COL6A3 (ENSSFOG00015026008) ##28	mlpha (ENSSFOG00015007120) #29	LRRFIP1 (ENSSFOG00015024437) #32	tyw5 (ENSSFOG00015007089)	ENSSFOG00015007005	zgc:153521 (ENSSFOG00015006986)	ftcdnl1 (ENSSFOG00015006980)
P. kingsleyae	MODERN SPECIES	200									MYO1B (ENSPKIG00000011278)	ENSPKIG00000011341	ENSPKIG00000011397	H2BC8 (ENSPKIG00000011450)	ENSPKIG00000011470	ramp1 (ENSPKIG00000011521) #34	ube2f (ENSPKIG00000011547) #35	AGAP1 (ENSPKIG00000011594) #22	gbx2 (ENSPKIG00000011620) #23	ENSPKIG00000011638	ackr3b (ENSPKIG00000011654) #26	cops8 (ENSPKIG00000011676)	COL6A3 (ENSPKIG00000011719) ##28	ENSPKIG00000011808 ##28	ENSPKIG00000011837 ##28	mlpha (ENSPKIG00000011882) #29	ENSPKIG00000011967 #32	ENSPKIG00000011981 #32	tyw5 (ENSPKIG00000012003)	ENSPKIG00000012027	zgc:153521 (ENSPKIG00000012067)	ftcdnl1 (ENSPKIG00000012083)	nabp1a (ENSPKIG00000012112)
Clupeocephala	ANCESTRAL SPECIES	315												ENSGT00950000183022.a.b	ENSGT00390000010308	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT01090000260051.b.b.dc.a #26	ENSGT00940000168428.b.a	ENSGT00940000177273	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b
Otomorpha	ANCESTRAL SPECIES	253											ENSGT00940000157829.m.a	ENSGT00390000010308	ENSGT00950000183022.a.b	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000000145.e	ENSGT00970000193621	ENSGT00940000157728.a.a	ENSGT00390000007225	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i	ENSGT00950000183001.a.b.b.l
Clupeiformes	ANCESTRAL SPECIES	123								ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000157829.m.a	ENSGT00390000010308	ENSGT00950000183022.a.b	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000000145.f	ENSGT00940000157728.a.b	ENSGT00970000193621	ENSGT00940000157728.a.a	ENSGT00390000007225	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i
Denticle herring	MODERN SPECIES	6	ENSDCDG00000035727	ECRG4 (ENSDCDG00000035725)	ENSDCDG00000035724	st6gal2b (ENSDCDG00000035722)	dzip1 (ENSDCDG00000035721)	ENSDCDG00000035719	ENSDCDG00000035716	ENSDCDG00000035712	ENSDCDG00000035706	ENSDCDG00000035705	GPR161 (ENSDCDG00000035703)	atg3 (ENSDCDG00000035698)	SLC19A2 (ENSDCDG00000035685)	ENSDCDG00000035681	faimb (ENSDCDG00000035680)	AGAP1 (ENSDCDG00000035651) #22	gbx2 (ENSDCDG00000035616) #23	iqca1 (ENSDCDG00000035604) #25	ackr3b (ENSDCDG00000035596) #26	trim63a (ENSDCDG00000035595)	mlpha (ENSDCDG00000035594) #29	LRRFIP1 (ENSDCDG00000035587) #32	cldn10a (ENSDCDG00000035586)	abcc4 (ENSDCDG00000035439)	SOX21 (ENSDCDG00000035420)	GPR180 (ENSDCDG00000035418)	TGDS (ENSDCDG00000035416)	GPR34 (ENSDCDG00000035415)	caskb (ENSDCDG00000035398)	ENSDCDG00000035230	ddx3xb (ENSDCDG00000034724)
Atlantic herring	MODERN SPECIES	13	pcid2 (ENSCHAG00000003797)	ENSCHAG00000003937	CARS2 (ENSCHAG00000003992)	adprhl1 (ENSCHAG00000004396)	TMCO3 (ENSCHAG00000004442)	ENSCHAG00000004802	ATP4B (ENSCHAG00000005391)	grk1a (ENSCHAG00000005421)	gas6 (ENSCHAG00000005468)	pros1 (ENSCHAG00000005634)	RASA3 (ENSCHAG00000005887)	mettl21e (ENSCHAG00000007037)	ENSCHAG00000007050	ENSCHAG00000007088	abcc4 (ENSCHAG00000007230)	AGAP1 (ENSCHAG00000012400) #22	gbx2 (ENSCHAG00000012994) #23	iqca1 (ENSCHAG00000013017) #25	ackr3b (ENSCHAG00000013097) #26	trim63a (ENSCHAG00000013105)	ENSCHAG00000013133	mlpha (ENSCHAG00000013143) #29	ENSCHAG00000013162 #32	st6gal2b (ENSCHAG00000013227)	ENSCHAG00000013483	ECRG4 (ENSCHAG00000013501)	ENSCHAG00000013608	NCK2 (ENSCHAG00000013619)	dph3 (ENSCHAG00000013633)	fhl2b (ENSCHAG00000013653)	tgfbrap1 (ENSCHAG00000013707)
Otophysi	ANCESTRAL SPECIES	49	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT00940000156702.a.b.b	ENSGT00940000158212.B	ENSGT00950000183022.b	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00390000000089	ENSGT00640000091496.e	ENSGT00640000091774.a.d	ENSGT00550000074820	ENSGT00950000183022.a.b	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.b	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000000145.e	ENSGT00970000193621	ENSGT00940000157728.a.a	ENSGT00390000007225	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i
Characiphysae	ANCESTRAL SPECIES	34	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT00940000156702.a.b.b	ENSGT00940000165423.a.b	ENSGT00950000183022.b	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00390000000089	ENSGT00640000091496.e	ENSGT00640000091774.a.d	ENSGT00550000074820	ENSGT00950000183022.a.b	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000000145.e	ENSGT00970000193621	ENSGT00940000157728.a.a	ENSGT00390000007225	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i	ENSGT00950000183001.a.b.b.l
Channel catfish	MODERN SPECIES	3	ENSIPUG00000010937	TBB6 (ENSIPUG00000010950)	gnas (ENSIPUG00000010975)	stx16 (ENSIPUG00000011032)	dzip1 (ENSIPUG00000011056)	CLDN10 (ENSIPUG00000011176)	cldn10e (ENSIPUG00000011196)	cldn10a (ENSIPUG00000011223)	NOMO1 (ENSIPUG00000011249)	UNC80 (ENSIPUG00000011371)	ENSIPUG00000011467	psmb3 (ENSIPUG00000011479)	slc19a2 (ENSIPUG00000011571)	ENSIPUG00000011585	faimb (ENSIPUG00000011598)	AGAP1 (ENSIPUG00000011638) #22	gbx2 (ENSIPUG00000011813) #23	iqca1 (ENSIPUG00000011834) #25	ACKR3 (ENSIPUG00000011903) #26	trim63a (ENSIPUG00000011920)	mlph (ENSIPUG00000011958) #29	LRRFIP1 (ENSIPUG00000012031) #32	st6gal2b (ENSIPUG00000012156)	ecrg4b (ENSIPUG00000012174)	ENSIPUG00000012185	nck2b (ENSIPUG00000012201)	dph3 (ENSIPUG00000012211)	Fhl2 (ENSIPUG00000012229)	tgfbrap1 (ENSIPUG00000012271)	GPR45 (ENSIPUG00000012376)	MRPS9 (ENSIPUG00000012385)
Characiphysae_b	ANCESTRAL SPECIES	50	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT00940000156702.a.b.b	ENSGT00940000158212.B	ENSGT00950000183022.b	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00390000000089	ENSGT00640000091496.e	ENSGT00640000091774.a.d	ENSGT00550000074820	ENSGT00950000183022.a.b	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000000145.e	ENSGT00970000193621	ENSGT00940000157728.a.a	ENSGT00950000183028.a.a.a.g.b.h	ENSGT00530000063596.A.i	ENSGT00950000183001.a.b.b.l	ENSGT00390000011204
Characoidei	ANCESTRAL SPECIES	44	ENSGT00390000005935	ENSGT00940000177589	ENSGT00940000163418.D	ENSGT00940000156702.a.b.b	ENSGT00940000158212.B	ENSGT00950000183022.b	ENSGT00940000162768.B.b	ENSGT00940000154360.A.b.b	ENSGT00390000000089	ENSGT00640000091496.e	ENSGT00640000091774.a.d	ENSGT00550000074820	ENSGT00950000183022.a.b	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00390000000145.e	ENSGT00970000193621	ENSGT00940000157728.a.a	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i	ENSGT00950000183001.a.b.b.l	ENSGT00390000011204
Red-bellied piranha	MODERN SPECIES	241	zgc:109982 (ENSPNAG00000001107)	dr1 (ENSPNAG00000004694)	GNG12 (ENSPNAG00000001124)	gadd45ab (ENSPNAG00000001129)	ENSPNAG00000001135	ENSPNAG00000008668	ENSPNAG00000001150	ENSPNAG00000008700	glulb (ENSPNAG00000001163)	UNC80 (ENSPNAG00000008782)	ENSPNAG00000001198	psmb3 (ENSPNAG00000008881)	SLC19A2 (ENSPNAG00000008918)	ENSPNAG00000008963	faimb (ENSPNAG00000001275)	AGAP1 (ENSPNAG00000009031) #22	gbx2 (ENSPNAG00000009051) #23	iqca1 (ENSPNAG00000009075) #25	ackr3b (ENSPNAG00000009081) #26	trim63a (ENSPNAG00000009090)	mlpha (ENSPNAG00000009109) #29	LRRFIP1 (ENSPNAG00000009198) #32	st6gal2b (ENSPNAG00000009304)	ENSPNAG00000009330	ecrg4b (ENSPNAG00000009351)	ENSPNAG00000009360	nck2b (ENSPNAG00000009371)
Mexicana tetra	MODERN SPECIES	4	ENSAMXG00000031953	obsl1a (ENSAMXG00000013478)	ENSAMXG00000033545	SLC19A1 (ENSAMXG00000013567)	ENSAMXG00000013588	LRRC3 (ENSAMXG00000025520)	rbm46 (ENSAMXG00000009397)	NOMO1 (ENSAMXG00000009410)	UNC80 (ENSAMXG00000009443)	ENSAMXG00000034438	psmb3 (ENSAMXG00000043971)	SLC19A2 (ENSAMXG00000033715)	ENSAMXG00000037556	faimb (ENSAMXG00000042496)	ENSAMXG00000032189	AGAP1 (ENSAMXG00000009515) #22	gbx2 (ENSAMXG00000009516) #23	iqca1 (ENSAMXG00000009524) #25	ackr3b (ENSAMXG00000025521) #26	trim63a (ENSAMXG00000025522)	mlpha (ENSAMXG00000009540) #29	LRRFIP1 (ENSAMXG00000013471) #32	st6gal2b (ENSAMXG00000043738)	ENSAMXG00000038316	ecrg4b (ENSAMXG00000043164)	ENSAMXG00000043885	ENSAMXG00000031307	ENSAMXG00000036241	ENSAMXG00000009563	rbl1 (ENSAMXG00000009565)	CHD6 (ENSAMXG00000009576)
Electric eel	MODERN SPECIES	81			ENSEEEG00000017449	med29 (ENSEEEG00000017453)	sars2 (ENSEEEG00000017476)	si:dkey-260j18.2 (ENSEEEG00000017518)	slc5a2 (ENSEEEG00000017561)	fbxo46 (ENSEEEG00000018228)	coq8b (ENSEEEG00000018241)	NUMBL (ENSEEEG00000018291)	UNC80 (ENSEEEG00000018295)	psmb3 (ENSEEEG00000018300)	SLC19A2 (ENSEEEG00000018301)	ENSEEEG00000018303	faimb (ENSEEEG00000018304)	AGAP1 (ENSEEEG00000018312) #22	gbx2 (ENSEEEG00000018425) #23	iqca1 (ENSEEEG00000018427) #25	ackr3b (ENSEEEG00000018437) #26	trim63a (ENSEEEG00000018440)	mlpha (ENSEEEG00000018443) #29	ENSEEEG00000018451 #32	st6gal2b (ENSEEEG00000018454)	ENSEEEG00000018458	ENSEEEG00000018462	nck2b (ENSEEEG00000018465)	ENSEEEG00000018467	FHL2 (ENSEEEG00000018469)	tgfbrap1 (ENSEEEG00000018481)	GPR45 (ENSEEEG00000018482)	mrps9 (ENSEEEG00000018498)
Cyprinoidei	DUPLICATION
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	51	ENSGT00390000005935	ENSGT01090000260005.a.a.a.b.a.b.a	ENSGT00940000158471	ENSGT00940000158542.a	ENSGT00940000155890.a.b	ENSGT00950000183022.b	ENSGT00940000162768.B.b	ENSGT00390000000089	ENSGT00640000091496.e	ENSGT00640000091774.a.d	ENSGT00550000074820	ENSGT00530000064692.A.a.a	ENSGT00950000183022.a.b	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C.e.a #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c #25	ENSGT01090000260051.b.b.ec #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.b	ENSGT00390000000145.e	ENSGT00970000193621	ENSGT00940000157728.a.a.c.a	ENSGT00390000007225	ENSGT00950000183028.a.a.a.g.b.g.b	ENSGT00530000063596.A.i	ENSGT00390000011204
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	539					ENSGT00940000155400.A.g	ENSGT00950000183022.b	ENSGT00940000162768.B.b.a	ENSGT00390000000089.a	ENSGT00640000091496.e	ENSGT00640000091774.a.d	ENSGT00550000074820.b	ENSGT00530000064692.A.a.a	ENSGT00950000183022.a.b.l	ENSGT00940000164470.b	ENSGT00390000007364.j.i	ENSGT00940000154793.C.e.a.a #22	ENSGT00940000154365.a.b.g #23	ENSGT00940000154067.c.eb #25	ENSGT01090000260051.b.b.ec.d.b #26	ENSGT00940000166042.a.a.a	ENSGT00950000183138.a.b.r.a.a #29	ENSGT00530000063564.b.a.a.a #32	ENSGT00940000158714.c.d	ENSGT01100000263502.A.a.a.a.b.b.a
Goldfish	MODERN SPECIES	46	tardbpb (ENSCARG00000055360)	PTPRG (ENSCARG00000055791)	ENSCARG00000055837	ENSCARG00000055892	ENSCARG00000056492	ENSCARG00000056510	ENSCARG00000056578	SLC19A1 (ENSCARG00000000192)	ENSCARG00000000243	ENSCARG00000000426	UNC80 (ENSCARG00000000636)	psmb3 (ENSCARG00000000927)	ENSCARG00000000936	ENSCARG00000000952	faimb (ENSCARG00000000956)	AGAP1 (ENSCARG00000001050) #22	gbx2 (ENSCARG00000001380) #23	iqca1 (ENSCARG00000001386) #25	ackr3b (ENSCARG00000001402) #26	trim63a (ENSCARG00000001405)	mlpha (ENSCARG00000001411) #29	ENSCARG00000001421 #32	st6gal2b (ENSCARG00000001439)	tmtops2a (ENSCARG00000001444)	ENSCARG00000001449	ENSCARG00000001450	CAMK1 (ENSCARG00000001523)	pbrm1l (ENSCARG00000002473)	stau1 (ENSCARG00000002703)	ENSCARG00000002752	ENSCARG00000002766
Cyprininae_a	ANCESTRAL SPECIES	206	ENSGT00940000158471.i	ENSGT00940000158542.a.a	ENSGT00940000155890.a.b.a	ENSGT00940000155400.A.g	ENSGT00940000167200	ENSGT00940000158212.B	ENSGT00950000183022.b.c	ENSGT00940000162768.B.b.a	ENSGT00390000000089.a	ENSGT00640000091496.e	ENSGT00640000091774.a.d	ENSGT00550000074820.b	ENSGT00950000183022.a.b.l	ENSGT00940000164470.b	ENSGT00390000007364.j.i	ENSGT00940000154793.C.e.a.a #22	ENSGT00940000154365.a.b.g #23	ENSGT00940000154067.c.eb.b.b #25	ENSGT01090000260051.b.b.ec.d.b #26	ENSGT00940000166042.a.a.a	ENSGT00950000183138.a.b.r.a.a #29	ENSGT00530000063564.b.a.a.a #32	ENSGT00940000158714.c.d	ENSGT01100000263502.A.a.a.a.b.b.a	ENSGT00390000000145.e.b	ENSGT00970000193621.c.a	ENSGT00940000157728.a.a.c.a	ENSGT00390000007225.bc	ENSGT00950000183028.a.a.a.g.b.g.b.a	ENSGT00530000063596.A.i.b	ENSGT00390000011204.c
Common carp reference	MODERN SPECIES	10	igfbp2a (ENSCCRG00000012457)	igfbp5a (ENSCCRG00000058484)	ENSCCRG00000030755	ENSCCRG00000061242	ENSCCRG00000065024	ENSCCRG00000031546	ENSCCRG00000031566	ENSCCRG00000031686	ENSCCRG00000070937	ENSCCRG00000053023	psmb3 (ENSCCRG00000063492)	zgc:161969 (ENSCCRG00000057426)	ENSCCRG00000009760	ENSCCRG00000009955	faimb (ENSCCRG00000072460)	AGAP1 (ENSCCRG00000020142) #22	gbx2 (ENSCCRG00000028726) #23	iqca1 (ENSCCRG00000037934) #25	ackr3b (ENSCCRG00000077205) #26	trim63a (ENSCCRG00000054076)	ENSCCRG00000080846	mlpha (ENSCCRG00000040978) #29	ENSCCRG00000075636 #32	st6gal2b (ENSCCRG00000038377)	tmtops2a (ENSCCRG00000007779)	ecrg4b (ENSCCRG00000079163)	ENSCCRG00000004683	nck2b (ENSCCRG00000021958)	dph3 (ENSCCRG00000081092)	fhl2b (ENSCCRG00000013989)	tgfbrap1 (ENSCCRG00000040206)
Golden-line barbel	MODERN SPECIES	216																AGAP1 (ENSSGRG00000046339) #22	gbx2 (ENSSGRG00000046337) #23	iqca1 (ENSSGRG00000046333) #25	ackr3b (ENSSGRG00000046331) #26	trim63a (ENSSGRG00000046330)	mlpha (ENSSGRG00000046329) #29	ENSSGRG00000046322 #32	st6gal2b (ENSSGRG00000046321)	tmtops2a (ENSSGRG00000046320)	ecrg4b (ENSSGRG00000046319)	ENSSGRG00000046318	dph3 (ENSSGRG00000046316)	fhl2b (ENSSGRG00000046315)	tgfbrap1 (ENSSGRG00000046313)	mrps9 (ENSSGRG00000046302)	pou3f3b (ENSSGRG00000046299)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000154793.C.e.a.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000154793.C.e.a.b #22
Golden-line barbel	MODERN SPECIES	79	obsl1a (ENSSGRG00000018563)	inha (ENSSGRG00000018555)	ENSSGRG00000018553	stk11ip (ENSSGRG00000018549)	igfbp2a (ENSSGRG00000018546)	igfbp5a (ENSSGRG00000018545)	ENSSGRG00000018542	ENSSGRG00000018536	SLC19A1 (ENSSGRG00000018510)	ENSSGRG00000018498	ENSSGRG00000018124	UNC80 (ENSSGRG00000018121)	psmb3 (ENSSGRG00000018119)	SLC19A2 (ENSSGRG00000018118)	ENSSGRG00000018117	AGAP1 (ENSSGRG00000015910) #22	gbx2 (ENSSGRG00000015884) #23	iqca1 (ENSSGRG00000015878) #25	ackr3b (ENSSGRG00000015876) #26	trim63a (ENSSGRG00000015875)	trim63a (ENSSGRG00000015874)	mlpha (ENSSGRG00000015872) #29	ENSSGRG00000015867 #32
Zebrafish	MODERN SPECIES	21	ENSDARG00000097037	ENSDARG00000091845	ENSDARG00000116830	ENSDARG00000115519	ENSDARG00000097837	ENSDARG00000110832	ENSDARG00000111070	NOMO1 (ENSDARG00000078592)	UNC80 (ENSDARG00000098290)	ENSDARG00000076865	psmb3 (ENSDARG00000013938)	zgc:161969 (ENSDARG00000041359)	SLC19A2 (ENSDARG00000059712)	ENSDARG00000030975	faimb (ENSDARG00000020814)	AGAP1 (ENSDARG00000062123) #22	gbx2 (ENSDARG00000002933) #23	ENSDARG00000115435	iqca1 (ENSDARG00000057276) #25	ackr3b (ENSDARG00000058179) #26	trim63a (ENSDARG00000028027)	mlpha (ENSDARG00000070991) #29	ENSDARG00000095170 #32	st6gal2b (ENSDARG00000088515)	tmtops2a (ENSDARG00000061515)	ENSDARG00000112756	ecrg4b (ENSDARG00000088717)	ENSDARG00000096905	nck2b (ENSDARG00000043361)	dph3 (ENSDARG00000043360)	fhl2b (ENSDARG00000003991)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000154793.C.e.b #22
Cyprininae	ANCESTRAL SPECIES	298						ENSGT00940000158471.j	ENSGT00940000158542.a.b	ENSGT00940000155890.a.b.b	ENSGT00940000155400.A.h	ENSGT00940000162768.B.b.b	ENSGT00390000000089.b	ENSGT00640000091496.f	ENSGT00550000074820.a	ENSGT00950000183022.a.b.k	ENSGT00390000007364.j.j	ENSGT00940000154793.C.e.b #22	ENSGT00940000154365.a.b.h #23	ENSGT01090000260051.b.b.ec.d.a #26	ENSGT00940000166042.a.a.b	ENSGT00950000183138.a.b.r.a.b #29	ENSGT00530000063564.b.a.a.b #32	ENSGT00940000158714.c.c	ENSGT01100000263502.A.a.a.a.b.b.b	ENSGT00390000000145.e.a	ENSGT00970000193621.c.b	ENSGT00940000157728.a.a.c.b	ENSGT00390000007225.cc	ENSGT00950000183028.a.a.a.g.b.g.b.b	ENSGT00530000063596.A.i.a	ENSGT00390000011204.d	ENSGT00940000164385.a.a.a.b.d.b
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00940000156104.B.l	ENSGT00390000018596.A.a.a.d	ENSGT01090000260005.a.a.a.b.a.b.a.hb.b.b	ENSGT00940000158471.j	ENSGT00940000158542.a.b	ENSGT00940000155890.a.b.b	ENSGT00940000155400.A.h	ENSGT00950000183022.b.d	ENSGT00940000162768.B.b.b	ENSGT00390000000089.b	ENSGT00640000091496.f	ENSGT00550000074820.a	ENSGT00530000064692.A.a.a	ENSGT00950000183022.a.b.k	ENSGT00390000007364.j.j	ENSGT00940000154793.C.e.b #22	ENSGT00940000154365.a.b.h #23	ENSGT00940000154067.c.eb.b.a #25	ENSGT01090000260051.b.b.ec.d.a #26	ENSGT00940000166042.a.a.b	ENSGT00950000183138.a.b.r.a.b #29	ENSGT00530000063564.b.a.a.b #32	ENSGT00940000158714.c.c	ENSGT01100000263502.A.a.a.a.b.b.b	ENSGT00390000000145.e.a	ENSGT00970000193621.d	ENSGT00940000157728.a.a.d	ENSGT00940000157728.a.a.c.b	ENSGT00390000007225.cc	ENSGT00950000183028.a.a.a.g.b.g.b.b	ENSGT00530000063596.A.i.a
Common carp reference	MODERN SPECIES	16	prkcaa (ENSCCRG00000060265)	cidec (ENSCCRG00000055685)	ENSCCRG00000058300	ENSCCRG00000019950	igfbp2a (ENSCCRG00000076584)	igfbp5a (ENSCCRG00000027580)	ENSCCRG00000016839	ENSCCRG00000016843	ENSCCRG00000002076	ENSCCRG00000014534	psmb3 (ENSCCRG00000080536)	zgc:161969 (ENSCCRG00000069335)	ENSCCRG00000014382	ENSCCRG00000014378	faimb (ENSCCRG00000014374)	AGAP1 (ENSCCRG00000062243) #22	gbx2 (ENSCCRG00000062305) #23	iqca1 (ENSCCRG00000037960) #25	ackr3b (ENSCCRG00000079377) #26	mlpha (ENSCCRG00000051530) #29	ENSCCRG00000038028 #32	st6gal2b (ENSCCRG00000007770)	tmtops2a (ENSCCRG00000007520)	ENSCCRG00000056859	ecrg4b (ENSCCRG00000007512)	NCK2 (ENSCCRG00000000828)	dph3 (ENSCCRG00000072587)	fhl2b (ENSCCRG00000040198)	tgfbrap1 (ENSCCRG00000054502)	pou3f3b (ENSCCRG00000040189)	ENSCCRG00000060811
Goldfish	MODERN SPECIES	24	ENSCARG00000038650	igfbp2a (ENSCARG00000038663)	ENSCARG00000038678	igfbp5a (ENSCARG00000038690)	ENSCARG00000038705	ENSCARG00000038710	ENSCARG00000038717	ENSCARG00000005882	ENSCARG00000006258	ENSCARG00000006688	ENSCARG00000008450	psmb3 (ENSCARG00000008453)	SLC19A2 (ENSCARG00000008464)	ENSCARG00000008477	faimb (ENSCARG00000008488)	AGAP1 (ENSCARG00000008585) #22	gbx2 (ENSCARG00000010270) #23	ackr3b (ENSCARG00000010278) #26	ENSCARG00000010285	trim63a (ENSCARG00000010292)	mlpha (ENSCARG00000010304) #29	ENSCARG00000010329 #32	st6gal2b (ENSCARG00000010343)	tmtops2a (ENSCARG00000010354)	ecrg4b (ENSCARG00000010369)	ENSCARG00000010371	NCK2 (ENSCARG00000010374)	dph3 (ENSCARG00000010384)	fhl2b (ENSCARG00000010389)	tgfbrap1 (ENSCARG00000010408)	mrps9 (ENSCARG00000010475)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000154793.C.f #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000154793.C.f #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000154793.C.f #22
Golden-line barbel	MODERN SPECIES	811								ENSSGRG00000041732	ENSSGRG00000041735	SLC19A1 (ENSSGRG00000041736)	ENSSGRG00000041741	ENSSGRG00000041795	ENSSGRG00000041980	psmb3 (ENSSGRG00000041997)	faimb (ENSSGRG00000042020)	ENSSGRG00000042021 #22
Euteleosteomorpha	ANCESTRAL SPECIES	272												ENSGT00950000183022.a.b	ENSGT00390000010308	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000157652	ENSGT01030000234570.d.a.p	ENSGT00530000063186.b.b	ENSGT00940000154695.d.b.b	ENSGT00940000159224.b #34	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b
Acanthomorphata	ANCESTRAL SPECIES	112									ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT01090000260051.b.b.dc.a #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.b.a #32	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00940000157728.a.a	ENSGT00390000007225	ENSGT00950000183028.a.a.a.g.b	ENSGT00390000014376.c.b	ENSGT00940000178373	ENSGT01030000235131	ENSGT00940000155773.a
Cod	MODERN SPECIES	17	ENSGMOG00000012828	gpr137c (ENSGMOG00000012825)	ENSGMOG00000012817	ptger2a (ENSGMOG00000016940)	NID2 (ENSGMOG00000016899)	ENSGMOG00000025470	ENSGMOG00000032806	ENSGMOG00000024423	ENSGMOG00000022723	ENSGMOG00000022468	CLASP1 (ENSGMOG00000026674)	ENSGMOG00000027128	INHBB (ENSGMOG00000035302)	ENSGMOG00000015837	faimb (ENSGMOG00000015789)	AGAP1 (ENSGMOG00000034953) #22	gbx2 (ENSGMOG00000023241) #23	ACKR3 (ENSGMOG00000019953) #26	trim63a (ENSGMOG00000032881)	mlpha (ENSGMOG00000015322) #29	LRRFIP1 (ENSGMOG00000033276) #32	ENSGMOG00000034928	ENSGMOG00000024916	ENSGMOG00000028402	ENSGMOG00000027622	ENSGMOG00000026244	ENSGMOG00000032686	ENSGMOG00000023092	ENSGMOG00000029307	ENSGMOG00000027480	ENSGMOG00000033932
Euacanthomorphacea	ANCESTRAL SPECIES	26	ENSGT00940000176171	ENSGT00500000044939	ENSGT00390000005159.j	ENSGT00940000156444.c	ENSGT00940000155861.C.e	ENSGT00940000159606	ENSGT00940000158239.b	ENSGT00940000164897.a.b	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT01090000260051.b.b.dc.a #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.b.a #32	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00940000157728.a.a	ENSGT00390000007225	ENSGT00950000183028.a.a.a.g.b	ENSGT00390000014376.c.b	ENSGT00940000178373	ENSGT01030000235131	ENSGT00940000155773.a
Pinecone sodierfish	MODERN SPECIES	11	tmem237b (ENSMMDG00005019232)	MPP4 (ENSMMDG00005019240)	ALS2 (ENSMMDG00005019353)	cdk15 (ENSMMDG00005019730)	fzd7a (ENSMMDG00005019732)	ENSMMDG00005019733	ENSMMDG00005019738	ENSMMDG00005019740	clcn4 (ENSMMDG00005019786)	ENSMMDG00005021501	CLASP1 (ENSMMDG00005021516)	ENSMMDG00005021541	INHBB (ENSMMDG00005021550)	RALB (ENSMMDG00005021555)	faimb (ENSMMDG00005021558)	AGAP1 (ENSMMDG00005021582) #22	gbx2 (ENSMMDG00005022206) #23	iqca1 (ENSMMDG00005022207) #25	ACKR3 (ENSMMDG00005022208) #26	ENSMMDG00005022209	ENSMMDG00005022210	ENSMMDG00005022211	trim63a (ENSMMDG00005022212)	mlpha (ENSMMDG00005022215) #29	ENSMMDG00005022217 #32	KLHL10 (ENSMMDG00005022219)	st6gal2b (ENSMMDG00005022221)	ENSMMDG00005022223	nck2b (ENSMMDG00005022226)	dph3 (ENSMMDG00005022230)	ENSMMDG00005022235
Percomorphaceae	ANCESTRAL SPECIES	22	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000159606	ENSGT00940000158239.b	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000018525.a.b.f	ENSGT00940000160000	ENSGT00390000001101	ENSGT00940000154505.A.c	ENSGT00940000157694	ENSGT00940000154474.B.b	ENSGT00940000154474.B.a	ENSGT00940000154474.A	ENSGT00530000066677	ENSGT00940000158209	ENSGT00390000005914.a	ENSGT00390000018208	ENSGT00940000157133	ENSGT00940000166718
Tiger tail seahorse	MODERN SPECIES	404	si:ch211-114n24.6 (ENSHCOG00000007846)	rpgrb (ENSHCOG00000007726)	dynlt3 (ENSHCOG00000007654)	cybb (ENSHCOG00000007641)	ENSHCOG00000007616	dusp27 (ENSHCOG00000007609)	ENSHCOG00000007602	plaat1l (ENSHCOG00000007591)	clcn4 (ENSHCOG00000007563)	ENSHCOG00000007522	CLASP1 (ENSHCOG00000007502)	gli2b (ENSHCOG00000007459)	ENSHCOG00000007438	INHBB (ENSHCOG00000007431)	ENSHCOG00000000249	AGAP1 (ENSHCOG00000007390) #22	gbx2 (ENSHCOG00000007352) #23	ENSHCOG00000007339	ENSHCOG00000007330	pcid2 (ENSHCOG00000007309)	prozb (ENSHCOG00000000672)	f10 (ENSHCOG00000007273)	ENSHCOG00000007268	f7i (ENSHCOG00000007255)	f7 (ENSHCOG00000007228)	f7 (ENSHCOG00000007160)	f7l (ENSHCOG00000007086)	ENSHCOG00000007071	ssr4 (ENSHCOG00000007045)	naa10 (ENSHCOG00000007025)	arhgap4a (ENSHCOG00000007011)
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT00940000155009.b	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817	ENSGT00730000111912.A.b	ENSGT00940000175362	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Ovalentaria_B	ANCESTRAL SPECIES	33												ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Pomacentridae	ANCESTRAL SPECIES	222										ENSGT00940000177199	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Bicolor damselfish	MODERN SPECIES	2301																ENSSPAG00000007844 #22	gbx2 (ENSSPAG00000007837) #23
Pomacentridae_A	ANCESTRAL SPECIES	258												ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Spiny chromis	MODERN SPECIES	1429																AGAP1 (ENSAPOG00000013964) #22	gbx2 (ENSAPOG00000013994) #23
Amphiprion	ANCESTRAL SPECIES	280									ENSGT00390000002188	ENSGT00390000002143.b.b	ENSGT00390000016811.g.g.a	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Orange clownfish	MODERN SPECIES	16	cd59 (ENSAPEG00000007881)	SNX9 (ENSAPEG00000007655)	ENSAPEG00000007555 #32	mlpha (ENSAPEG00000007517) #29	trim63a (ENSAPEG00000007491)	ST6GAL2 (ENSAPEG00000007468)	ECRG4 (ENSAPEG00000007434)	ENSAPEG00000007414	EFR3B (ENSAPEG00000007392)	pomca (ENSAPEG00000007378)	GLI2 (ENSAPEG00000007312)	ENSAPEG00000007292	INHBB (ENSAPEG00000007274)	ENSAPEG00000007259	faimb (ENSAPEG00000007243)	AGAP1 (ENSAPEG00000007151) #22	gbx2 (ENSAPEG00000007090) #23	ENSAPEG00000006851	ENSAPEG00000006802	f10 (ENSAPEG00000006789)	ENSAPEG00000006773	ENSAPEG00000006763	CLASP1 (ENSAPEG00000006647)	ENSAPEG00000006625	ENSAPEG00000006561	ENSAPEG00000006528	GPR180 (ENSAPEG00000006487)	ENSAPEG00000006410	ENSAPEG00000005976	SLC5A3 (ENSAPEG00000005887)	ENSAPEG00000005865
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	3211																ENSAOCG00000018825 #22
Clown anemonefish	MODERN SPECIES	2578														ENSAOCG00000011635	FAIM (ENSAOCG00000011608)	ENSAOCG00000011547 #22	ENSAOCG00000011506
Cichlidae	ANCESTRAL SPECIES	48												ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Midas cichlid	MODERN SPECIES	528											ENSACIG00000007770	GLI2 (ENSACIG00000007662)	INHBB (ENSACIG00000007640)	ralbb (ENSACIG00000007537)	faimb (ENSACIG00000007524)	AGAP1 (ENSACIG00000007484) #22	gbx2 (ENSACIG00000007467) #23	ENSACIG00000007457	ENSACIG00000007342
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000154851.A.o	ENSGT00940000159723	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817.p.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.b.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.b	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.b	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b
Nile tilapia	MODERN SPECIES	14	ENSONIG00000030316	ENSONIG00000028044	ENSONIG00000034140	ENSONIG00000033365	ENSONIG00000041932	ENSONIG00000038974	ENSONIG00000033425	ENSONIG00000042604	ENSONIG00000027424	ENSONIG00000029213	ENSONIG00000020644	gli2b (ENSONIG00000003608)	INHBB (ENSONIG00000032287)	ralbb (ENSONIG00000003604)	faimb (ENSONIG00000003601)	AGAP1 (ENSONIG00000003589) #22	gbx2 (ENSONIG00000039796) #23	ENSONIG00000003583	ENSONIG00000038577	ENSONIG00000038485	ENSONIG00000036642	ENSONIG00000038930	ENSONIG00000038516	ENSONIG00000038421	ENSONIG00000038677	ENSONIG00000035529	ENSONIG00000039704	ENSONIG00000003976	ENSONIG00000039544	ENSONIG00000039119	mid1ip1b (ENSONIG00000009043)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817.p.b	ENSGT00940000168817.p.a.a.a	ENSGT00940000154851.A.p	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.b.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.b	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.a.a.a	ENSGT00940000162312.h.e.b.b.a.b	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b
Lyretail cichlid	MODERN SPECIES	360	ephx2 (ENSNBRG00000020540)	ENSNBRG00000020702	ENSNBRG00000020741	ENSNBRG00000020754	ENSNBRG00000020767	CLASP1 (ENSNBRG00000020799)	clcn4 (ENSNBRG00000020867)	ENSNBRG00000020879	ENSNBRG00000020899	ENSNBRG00000020912	ENSNBRG00000020926	GLI2 (ENSNBRG00000020988)	INHBB (ENSNBRG00000021162)	ralbb (ENSNBRG00000021187)	faimb (ENSNBRG00000021197)	AGAP1 (ENSNBRG00000021217) #22	gbx2 (ENSNBRG00000021246) #23	ENSNBRG00000021261	ENSNBRG00000021279	ENSNBRG00000021308	ENSNBRG00000021340	ENSNBRG00000021351	ENSNBRG00000021398	ENSNBRG00000021443	ENSNBRG00000021458	ENSNBRG00000021485	pomca (ENSNBRG00000021513)	EFR3B (ENSNBRG00000021586)	ENSNBRG00000021704	KALRN (ENSNBRG00000021756)	bco1l (ENSNBRG00000021874)
Haplochromini	ANCESTRAL SPECIES	41	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817.p.b	ENSGT00940000168817.p.a.a.a	ENSGT00940000154851.A.p	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.b.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.b	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.b	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b
Burton s mouthbrooder	MODERN SPECIES	322					ENSHBUG00000022264	ENSHBUG00000022309	ENSHBUG00000022318	ENSHBUG00000022330	ENSHBUG00000022342	ENSHBUG00000022358	ENSHBUG00000022400	ENSHBUG00000022420	INHBB (ENSHBUG00000022433)	ralbb (ENSHBUG00000000792)	faimb (ENSHBUG00000000690)	AGAP1 (ENSHBUG00000000693) #22	gbx2 (ENSHBUG00000022592) #23	ENSHBUG00000022612	ENSHBUG00000022630	ENSHBUG00000022684	ENSHBUG00000022734	ENSHBUG00000022781	ENSHBUG00000022805	fbxl5 (ENSHBUG00000000756)	CC2D2A (ENSHBUG00000023125)	C1QTNF7 (ENSHBUG00000023151)	CPEB2 (ENSHBUG00000023297)	ndnf (ENSHBUG00000023318)	prdm5 (ENSHBUG00000023375)	CELA3A (ENSHBUG00000023411)	slc34a2b (ENSHBUG00000023425)
Haplochromini_A	ANCESTRAL SPECIES	52	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817.p.b	ENSGT00940000168817.p.a.a.a	ENSGT00940000154851.A.p	ENSGT00940000154817.b.b.b.p	ENSGT00940000158265	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.b.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.a.a.b.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.b	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000166049.pb.b	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.b	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137
P. nyererei	MODERN SPECIES	515				CLASP1 (ENSPNYG00000010317)	clcn4 (ENSPNYG00000010215)	ENSPNYG00000010196	ENSPNYG00000010163	ENSPNYG00000010027	ENSPNYG00000009940	ENSPNYG00000009928	ENSPNYG00000009916	gli2b (ENSPNYG00000009879)	INHBB (ENSPNYG00000009818)	ralbb (ENSPNYG00000009792)	faimb (ENSPNYG00000009750)	AGAP1 (ENSPNYG00000009691) #22	gbx2 (ENSPNYG00000009656) #23	ENSPNYG00000009631	ENSPNYG00000009617	ENSPNYG00000009601	ENSPNYG00000009542	ENSPNYG00000009517	ENSPNYG00000009453
Haplochromini_B	ANCESTRAL SPECIES	70						ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.b.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.a.a.b.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.a.a.b.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.b.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.a.a.a.b	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000166049.pb.b	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.a.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.a.a.a.b	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000153866.A.k.b.a.a.a.a	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243
Eastern happy	MODERN SPECIES	14	ENSACLG00000008471	CLASP1 (ENSACLG00000008415)	clcn4 (ENSACLG00000008394)	ENSACLG00000008391	ENSACLG00000008384	ENSACLG00000008383	ENSACLG00000008372	ENSACLG00000008365	ENSACLG00000008362	ENSACLG00000008361	gli2b (ENSACLG00000007319)	INHBB (ENSACLG00000007315)	ralbb (ENSACLG00000007309)	ENSACLG00000007298	faimb (ENSACLG00000007287)	AGAP1 (ENSACLG00000006506) #22	gbx2 (ENSACLG00000006488) #23	ENSACLG00000006479	ENSACLG00000006476	ENSACLG00000006472	ENSACLG00000006075	ENSACLG00000006065	ENSACLG00000006034	ENSACLG00000006019	ENSACLG00000006014	ENSACLG00000006012	ENSACLG00000005988	ENSACLG00000005967	ENSACLG00000005927	ENSACLG00000005908	ENSACLG00000005860
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005013811	ENSMZEG00005013805	ENSMZEG00005013799	dph3 (ENSMZEG00005013794)	ENSMZEG00005013722	fzd7a (ENSMZEG00005013710)	cdk15 (ENSMZEG00005013700)	ftcd (ENSMZEG00005013671)	ENSMZEG00005013651	abi3bpb (ENSMZEG00005013274)	ENSMZEG00005013249	senp7b (ENSMZEG00005013233)	ENSMZEG00005013225	ENSMZEG00005013201	ENSMZEG00005013192	AGAP1 (ENSMZEG00005013181) #22	gbx2 (ENSMZEG00005013161) #23	ENSMZEG00005013148	ENSMZEG00005013099	ENSMZEG00005013084	ENSMZEG00005013053	ENSMZEG00005013041	ENSMZEG00005013029	ENSMZEG00005013016	ENSMZEG00005013000	pomca (ENSMZEG00005012990)	EFR3B (ENSMZEG00005012928)	ENSMZEG00005012903	ENSMZEG00005012805	bco1l (ENSMZEG00005012745)	ENSMZEG00005012696
Zebra mbuna	MODERN SPECIES	702																ENSMZEG00005025703 #22
Atherinomorphae	ANCESTRAL SPECIES	24										ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756	ENSGT00940000172021
Oryzias	ANCESTRAL SPECIES	43	ENSGT00940000154474.B.a	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00940000154474.C	ENSGT00390000001101	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00390000004585	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Oryzias_b	ANCESTRAL SPECIES	24	ENSGT00940000154474.B.a	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00940000154474.C	ENSGT00390000001101	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00390000004585	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756	ENSGT00940000153571.b
Indian medaka	MODERN SPECIES	20	SFT2D2 (ENSOMEG00000017646)	ENSOMEG00000017621	f2 (ENSOMEG00000017563)	ENSOMEG00000017502	ENSOMEG00000017460	clcn4 (ENSOMEG00000017440)	ENSOMEG00000017407	ENSOMEG00000017369	ENSOMEG00000017353	gli2b (ENSOMEG00000017339)	ENSOMEG00000017312	INHBB (ENSOMEG00000017293)	ENSOMEG00000017274	RALB (ENSOMEG00000017247)	faimb (ENSOMEG00000017235)	AGAP1 (ENSOMEG00000017185) #22	gbx2 (ENSOMEG00000017010) #23	pomca (ENSOMEG00000016973)	EFR3B (ENSOMEG00000016796)	ENSOMEG00000016753	ENSOMEG00000016718	ENSOMEG00000016703	ENSOMEG00000016696	ENSOMEG00000016660	bco1l (ENSOMEG00000016571)	ENSOMEG00000016539	ENSOMEG00000016470	ENSOMEG00000016457	ENSOMEG00000016449	SH3YL1 (ENSOMEG00000016423)	ENSOMEG00000016379
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000017616	ENSOJAG00000017690	f7l (ENSOJAG00000017724)	f10 (ENSOJAG00000017737)	prozb (ENSOJAG00000017794)	ENSOJAG00000017889	ENSOJAG00000017915	f2 (ENSOJAG00000017952)	ENSOJAG00000018440	ENSOJAG00000018453	clcn4 (ENSOJAG00000018464)	gli2b (ENSOJAG00000019974)	INHBB (ENSOJAG00000000074)	ENSOJAG00000000102	faimb (ENSOJAG00000000114)	AGAP1 (ENSOJAG00000000288) #22	gbx2 (ENSOJAG00000000377) #23	pomca (ENSOJAG00000000387)	EFR3B (ENSOJAG00000000416)	ENSOJAG00000000529	bco1l (ENSOJAG00000000932)	ENSOJAG00000000991	lipt1 (ENSOJAG00000001095)	ENSOJAG00000001103	ENSOJAG00000001118	ENSOJAG00000001121	ENSOJAG00000001132	ENSOJAG00000001141	ENSOJAG00000001154	fbxo3 (ENSOJAG00000001164)	ENSOJAG00000001172
Oryzias_a	ANCESTRAL SPECIES	60	ENSGT00940000158209	ENSGT00940000154474.A	ENSGT00940000154474.B.a	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00390000001101	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00390000004585	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Japanese Medaka HdrR	MODERN SPECIES	11	f7 (ENSORLG00000001180)	f10 (ENSORLG00000025207)	ENSORLG00000001211	pcid2 (ENSORLG00000001231)	ENSORLG00000001239	ENSORLG00000025319	ENSORLG00000023332	f2 (ENSORLG00000019844)	ENSORLG00000000197	ENSORLG00000001248	CLASP1 (ENSORLG00000001312)	gli2b (ENSORLG00000001328)	INHBB (ENSORLG00000001340)	ENSORLG00000001355	faimb (ENSORLG00000026394)	AGAP1 (ENSORLG00000001374) #22	gbx2 (ENSORLG00000028146) #23	pomca (ENSORLG00000025908)	ENSORLG00000001436	ENSORLG00000001455	ENSORLG00000001484	ENSORLG00000024973	bco1l (ENSORLG00000001512)	ENSORLG00000001525	lipt1 (ENSORLG00000001533)	ENSORLG00000022258	ENSORLG00000030505	ENSORLG00000027295	SH3YL1 (ENSORLG00000001545)	ENSORLG00000023474	ENSORLG00000027424
Cyprinodontiformes	ANCESTRAL SPECIES	83										ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h
Cyprinodontoidei	ANCESTRAL SPECIES	104										ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h
Poeciliinae	ANCESTRAL SPECIES	34	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT01100000263489.a.a.b.a.a.b.b.b.b.a.a	ENSGT00940000153737.b.g.a	ENSGT00500000044890.a.a.f	ENSGT00940000156153.y.b	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000007225	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00390000014242.k.c	ENSGT00940000155009.b	ENSGT00940000166110
Poecilia	ANCESTRAL SPECIES	27	ENSGT00940000159169	ENSGT00390000005581.a	ENSGT01100000263489.a.a.b.a.a.b.b.b.b.a.a	ENSGT00940000153737.b.g.a	ENSGT00500000044890.a.a.f	ENSGT00940000156153.y.b	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000007225	ENSGT00950000182905.a.a.a.a.a.b	ENSGT00390000016940.c.b.b	ENSGT00940000155522.g.b	ENSGT00390000003164	ENSGT00940000154095.b.b.a.a	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000182882.A.b.b.f	ENSGT00940000164444.b	ENSGT00390000009940	ENSGT00390000014242.k.c	ENSGT00940000155009.b	ENSGT00940000166110
NAME_6	ANCESTRAL SPECIES	324						ENSGT00500000044890.a.a.f	ENSGT00940000156153.y.b	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h	ENSGT00390000007225
Sailfin molly	MODERN SPECIES	396			mid1ip1b (ENSPLAG00000008599)	tspan7b (ENSPLAG00000008677)	XDH (ENSPLAG00000008793)	ENSPLAG00000008821	dnajc27 (ENSPLAG00000008845)	ENSPLAG00000008856	clcn4 (ENSPLAG00000000184)	ENSPLAG00000008890	ENSPLAG00000008947	ENSPLAG00000008979	INHBB (ENSPLAG00000008988)	ENSPLAG00000008996	faimb (ENSPLAG00000009030)	AGAP1 (ENSPLAG00000009106) #22	gbx2 (ENSPLAG00000009111) #23	pomca (ENSPLAG00000009124)	dph3 (ENSPLAG00000009140)
Amazon molly	MODERN SPECIES	516		mid1ip1b (ENSPFOG00000020004)	tspan7b (ENSPFOG00000007487)	XDH (ENSPFOG00000006876)	ENSPFOG00000006456	dnajc27 (ENSPFOG00000006335)	ENSPFOG00000006324	ENSPFOG00000006222	ENSPFOG00000006206	clcn4 (ENSPFOG00000006075)	CLASP1 (ENSPFOG00000005373)	ENSPFOG00000005116	INHBB (ENSPFOG00000005088)	ENSPFOG00000005056	faimb (ENSPFOG00000004988)	AGAP1 (ENSPFOG00000004340) #22	gbx2 (ENSPFOG00000004268) #23	pomca (ENSPFOG00000004254)	dph3 (ENSPFOG00000004226)	ENSPFOG00000024498
Guppy	MODERN SPECIES	450	ENSPREG00000012337	ENSPREG00000012351	ENSPREG00000012366	trpc5a (ENSPREG00000012394)	cnpy3 (ENSPREG00000012469)	ENSPREG00000012482	stk26 (ENSPREG00000012519)	ENSPREG00000012553	zgc:77880 (ENSPREG00000012573)	clcn4 (ENSPREG00000012636)	CLASP1 (ENSPREG00000012726)	GLI2 (ENSPREG00000013102)	INHBB (ENSPREG00000013172)	ENSPREG00000013186	faimb (ENSPREG00000013204)	AGAP1 (ENSPREG00000013249) #22	gbx2 (ENSPREG00000013353) #23	POMC (ENSPREG00000013365)	dph3 (ENSPREG00000013380)	ENSPREG00000013393	tmem198b (ENSPREG00000013409)	desmb (ENSPREG00000013430)	dnpep (ENSPREG00000013669)	PTPRN (ENSPREG00000014685)	ENSPREG00000014699	ENSPREG00000014712	ihhb (ENSPREG00000014719)	nhej1 (ENSPREG00000014727)	cybb (ENSPREG00000014749)	dynlt3 (ENSPREG00000014780)	ENSPREG00000014822
Platyfish	MODERN SPECIES	16	bcor (ENSXMAG00000012802)	mid1ip1b (ENSXMAG00000020387)	tspan7b (ENSXMAG00000003562)	XDH (ENSXMAG00000003461)	ENSXMAG00000003420	dnajc27 (ENSXMAG00000003407)	ENSXMAG00000028697	clcn4 (ENSXMAG00000000799)	ENSXMAG00000000776	ENSXMAG00000026049	ENSXMAG00000021252	gli2b (ENSXMAG00000006443)	ENSXMAG00000026222	INHBB (ENSXMAG00000022566)	ENSXMAG00000024560	AGAP1 (ENSXMAG00000006413) #22	gbx2 (ENSXMAG00000022618) #23	pomca (ENSXMAG00000024752)	dph3 (ENSXMAG00000006409)	ENSXMAG00000021308	ENSXMAG00000012859	tmem198b (ENSXMAG00000027709)	desmb (ENSXMAG00000000059)	dnpep (ENSXMAG00000010734)	PTPRN (ENSXMAG00000010728)	ENSXMAG00000010726	bin1b (ENSXMAG00000010710)	ihhb (ENSXMAG00000010701)	nhej1 (ENSXMAG00000010700)	ENSXMAG00000022252	ENSXMAG00000028635
NAME_4	ANCESTRAL SPECIES	314									ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00940000155984.j	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.h
Sheepshead minnow	MODERN SPECIES	702				ENSCVAG00000014072	clcn4 (ENSCVAG00000013981)	ENSCVAG00000000981	ENSCVAG00000000905	ENSCVAG00000013911	ENSCVAG00000013892	GLI2 (ENSCVAG00000013874)	ENSCVAG00000013670	ENSCVAG00000013651	INHBB (ENSCVAG00000013635)	ralbb (ENSCVAG00000013632)	faimb (ENSCVAG00000000832)	AGAP1 (ENSCVAG00000013594) #22	gbx2 (ENSCVAG00000013464) #23	pomca (ENSCVAG00000013450)	ENSCVAG00000013252
Mummichog	MODERN SPECIES	1154																ENSFHEG00000020105 #22	gbx2 (ENSFHEG00000020141) #23	pomca (ENSFHEG00000020549)
Aplocheiloidei	ANCESTRAL SPECIES	264											ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Turquoise killifish	MODERN SPECIES	1619	ENSNFUG00015016356	ENSNFUG00015016350	prozb (ENSNFUG00015016320)	f10 (ENSNFUG00015016294)	f7i (ENSNFUG00015016273)	f7 (ENSNFUG00015016264)	f7l (ENSNFUG00015016260)	ENSNFUG00015016252	creg1 (ENSNFUG00015016242)	ENSNFUG00015016235	CLASP1 (ENSNFUG00015015312)	GLI2 (ENSNFUG00015015102)	INHBB (ENSNFUG00015015055)	ralbb (ENSNFUG00015015010)	FAIMB (ENSNFUG00015014998)	AGAP1 (ENSNFUG00015011813) #22	gbx2 (ENSNFUG00015011603) #23	ENSNFUG00015011592 #32	pomca (ENSNFUG00015011582)	MLPH (ENSNFUG00015011558) #29	SNX9 (ENSNFUG00015011387)	BX957297.2 (ENSNFUG00015011364)	ENSNFUG00015011343	EEF1B2 (ENSNFUG00015011306) #32	arl11 (ENSNFUG00015011283)	ebpl (ENSNFUG00015011262)	ENSNFUG00015011253	SLC19A2 (ENSNFUG00015011244)	ENSNFUG00015011234	ENSNFUG00015011228	ENSNFUG00015011220
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	761																AGAP1 (ENSKMAG00000014359) #22	gbx2 (ENSKMAG00000014348) #23
Mangrove rivulus	MODERN SPECIES	1442																ENSKMAG00000001610 #22
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000154474.B.b	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00390000001101	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Anabantaria	ANCESTRAL SPECIES	36									ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756	ENSGT00940000153571.b
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000022514	ahr1b (ENSMAMG00000022515)	ENSMAMG00000022516	mfsd6a (ENSMAMG00000022518)	nab1a (ENSMAMG00000022520)	glsa (ENSMAMG00000022523)	ENSMAMG00000022525	ENSMAMG00000022527	ENSMAMG00000022531	ENSMAMG00000022534	CLASP1 (ENSMAMG00000022535)	ENSMAMG00000022543	INHBB (ENSMAMG00000027863)	ENSMAMG00000022548	faimb (ENSMAMG00000022549)	ENSMAMG00000022551 #22	ENSMAMG00000022554	gbx2 (ENSMAMG00000022558) #23	ENSMAMG00000022559	ENSMAMG00000022560	ENSMAMG00000026849	ENSMAMG00000022563	ENSMAMG00000024349	ENSMAMG00000022565	ENSMAMG00000026531	ENSMAMG00000022568	ENSMAMG00000022570	ENSMAMG00000022576	ENSMAMG00000022581	ENSMAMG00000022585	ENSMAMG00000022607
Anabantoidei	ANCESTRAL SPECIES	28	ENSGT00940000177277	ENSGT00940000167649	ENSGT01050000244905.A.a	ENSGT00390000010463.a.b.c.a	ENSGT00390000006330.a.a.b	ENSGT00530000063599.B	ENSGT00940000155311.B	ENSGT00940000154486.b.b.a.a	ENSGT00940000154486.b.a.a.b.e.b	ENSGT00940000158265	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000175756	ENSGT00940000172021	ENSGT00940000153571.b	ENSGT00940000158614
Siamese fighting fish	MODERN SPECIES	10	s100b (ENSBSLG00000010525)	mstna (ENSBSLG00000010533)	stat1a (ENSBSLG00000010548)	glsa (ENSBSLG00000011120)	nab1a (ENSBSLG00000011389)	mfsd6a (ENSBSLG00000011394)	ENSBSLG00000011399	ENSBSLG00000011400	clcn4 (ENSBSLG00000011430)	CLASP1 (ENSBSLG00000013719)	ENSBSLG00000019701	GLI2 (ENSBSLG00000019708)	ENSBSLG00000019723	INHBB (ENSBSLG00000019726)	ENSBSLG00000019728	AGAP1 (ENSBSLG00000019882) #22	gbx2 (ENSBSLG00000020418) #23	mylz3 (ENSBSLG00000020425)	lancl1 (ENSBSLG00000020438)	erbb4a (ENSBSLG00000020537)	RAMP1 (ENSBSLG00000022196) #34	klf7a (ENSBSLG00000022198)	CREB1 (ENSBSLG00000022332)	mettl21a (ENSBSLG00000022369)	ENSBSLG00000022388	ENSBSLG00000022466	ENSBSLG00000022605	igfbp5a (ENSBSLG00000022607)	igfbp2a (ENSBSLG00000022803)	stk11ip (ENSBSLG00000022845)	ENSBSLG00000022921
Climbing perch	MODERN SPECIES	11	glsa (ENSATEG00000012895)	nab1a (ENSATEG00000012852)	ENSATEG00000029503	mfsd6a (ENSATEG00000012822)	ENSATEG00000012809	ahr1b (ENSATEG00000012788)	ENSATEG00000012774	ENSATEG00000012721	ENSATEG00000012706	ENSATEG00000012700	CLASP1 (ENSATEG00000012593)	ENSATEG00000012337	INHBB (ENSATEG00000012307)	ENSATEG00000012302	faimb (ENSATEG00000012276)	ENSATEG00000012222 #22	gbx2 (ENSATEG00000012203) #23	ENSATEG00000011969	ENSATEG00000011744	ENSATEG00000011727	ENSATEG00000011617	ENSATEG00000011507	ENSATEG00000011451	ENSATEG00000011345	ENSATEG00000011259	ENSATEG00000006757	ENSATEG00000006751	ENSATEG00000029705	ENSATEG00000011172	ENSATEG00000011166	ENSATEG00000026564
Carangaria	ANCESTRAL SPECIES	30	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00390000001101	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000168817	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000153571.b	ENSGT00940000172021	ENSGT00940000175756	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00940000160303.a.b	ENSGT00390000008846	ENSGT00940000179865	ENSGT00940000163243	ENSGT00950000182913.A.b.a	ENSGT00940000155248.vb.g.a	ENSGT00940000155248.vb.g.b	ENSGT00390000002188
Carangaria_A	ANCESTRAL SPECIES	61	ENSGT00940000154474.B.b	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00390000001101	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000177199	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00940000155984.j	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000153571.b	ENSGT00940000172021	ENSGT00940000175756	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00940000160303.a.b	ENSGT00390000004585	ENSGT00390000008846	ENSGT00940000163243	ENSGT00950000182913.A.b.a	ENSGT00940000155248.vb.g.a	ENSGT00940000155248.vb.g.b	ENSGT00390000002188
Seriola	ANCESTRAL SPECIES	71	ENSGT00940000154474.B.a	ENSGT00940000154474.B.b	ENSGT00940000157694	ENSGT00940000154505.A.c	ENSGT00390000001101	ENSGT00940000160000	ENSGT00390000018525.a.b.f	ENSGT00940000165332.C	ENSGT00940000164059	ENSGT00940000177199.a.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000153571.b	ENSGT00940000172021	ENSGT00940000175756	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00390000004585	ENSGT00390000008846	ENSGT00940000163243	ENSGT00950000182913.A.b.a	ENSGT00940000155248.vb.g.a	ENSGT00940000155248.vb.g.b	ENSGT00390000002188	ENSGT00390000002143.b.b
Yellowtail amberjack	MODERN SPECIES	3263	f7 (ENSSLDG00000014996)	f7i (ENSSLDG00000014979)	f10 (ENSSLDG00000014961)	prozb (ENSSLDG00000014942)	pcid2 (ENSSLDG00000014914)	ENSSLDG00000014716	ENSSLDG00000014653	ENSSLDG00000014615	f2 (ENSSLDG00000014579)	ENSSLDG00000014560	CLASP1 (ENSSLDG00000014462)	gli2b (ENSSLDG00000014148)	INHBB (ENSSLDG00000014056)	ENSSLDG00000014032	faimb (ENSSLDG00000014007)	AGAP1 (ENSSLDG00000013963) #22	gbx2 (ENSSLDG00000013935) #23	ENSSLDG00000013925	fbxo3 (ENSSLDG00000013899)	ENSSLDG00000013883	ENSSLDG00000013863	ENSSLDG00000013839	SH3YL1 (ENSSLDG00000013813)	ENSSLDG00000013789	lipt1 (ENSSLDG00000013775)	ENSSLDG00000013738	bco1l (ENSSLDG00000013694)	ENSSLDG00000013670	ENSSLDG00000013482	iqcb1 (ENSSLDG00000013382)	ENSSLDG00000013351
Greater amberjack	MODERN SPECIES	152	f7 (ENSSDUG00000002912)	f7i (ENSSDUG00000002886)	f10 (ENSSDUG00000002846)	prozb (ENSSDUG00000002834)	pcid2 (ENSSDUG00000002753)	ENSSDUG00000002635	ENSSDUG00000002613	ENSSDUG00000002597	f2 (ENSSDUG00000002556)	CLASP1 (ENSSDUG00000002450)	gli2b (ENSSDUG00000002283)	ENSSDUG00000002260	INHBB (ENSSDUG00000002249)	ENSSDUG00000002231	faimb (ENSSDUG00000002222)	AGAP1 (ENSSDUG00000002169) #22	gbx2 (ENSSDUG00000002140) #23
Barramundi perch	MODERN SPECIES	404												gli2b (ENSLCAG00010002691)	INHBB (ENSLCAG00010002699)	ENSLCAG00010002707	faimb (ENSLCAG00010002716)	AGAP1 (ENSLCAG00010002735) #22	ENSLCAG00010002775	gbx2 (ENSLCAG00010002779) #23	lipt1 (ENSLCAG00010002784)	ENSLCAG00010002832	bco1l (ENSLCAG00010003099)	ENSLCAG00010003382	EFR3B (ENSLCAG00010003396)	pomca (ENSLCAG00010003429)
Pleuronectoidei	ANCESTRAL SPECIES	124												ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Tongue sole	MODERN SPECIES	5	ENSCSEG00000008956	abi3bpb (ENSCSEG00000008989)	ftcd (ENSCSEG00000009019)	ENSCSEG00000009053	ENSCSEG00000009060	ENSCSEG00000009064 #32	mlpha (ENSCSEG00000009091) #29	ENSCSEG00000009127	ENSCSEG00000009143	eef1b2 (ENSCSEG00000009151)	arl11 (ENSCSEG00000009161)	ebpl (ENSCSEG00000009172)	ENSCSEG00000009207	INHBB (ENSCSEG00000009232)	ENSCSEG00000009239	AGAP1 (ENSCSEG00000009268) #22	gbx2 (ENSCSEG00000009352) #23	SCAI (ENSCSEG00000009360)	derl2 (ENSCSEG00000009397)	fbxw2 (ENSCSEG00000009422)	prrc1 (ENSCSEG00000009455)	ENSCSEG00000009468	pmpcb (ENSCSEG00000009485)	megf10 (ENSCSEG00000009495)	chd1 (ENSCSEG00000009553)	syk (ENSCSEG00000009733)	ROR2 (ENSCSEG00000009796)	nfil3 (ENSCSEG00000009825)	auh (ENSCSEG00000009830)	sptlc1 (ENSCSEG00000009841)	reep5 (ENSCSEG00000009866)
Turbot	MODERN SPECIES		ENSSMAG00000000046	ENSSMAG00000000047	ENSSMAG00000023958	ENSSMAG00000023050	ENSSMAG00000000049	ENSSMAG00000000050	ENSSMAG00000000051	ENSSMAG00000000054	ENSSMAG00000000053	ENSSMAG00000030256	ENSSMAG00000000057	ENSSMAG00000000059	ENSSMAG00000021730	ENSSMAG00000000061	faimb (ENSSMAG00000032839)	ENSSMAG00000000063 #22	gbx2 (ENSSMAG00000000064) #23	ENSSMAG00000022439	ENSSMAG00000000066	ENSSMAG00000000067	ENSSMAG00000000087	ENSSMAG00000000250	ENSSMAG00000000255	ENSSMAG00000000264	ENSSMAG00000000270	WDR12 (ENSSMAG00000000297)	ICA1L (ENSSMAG00000000304)	ENSSMAG00000000319	BMPR2 (ENSSMAG00000000324)	ENSSMAG00000000342	ENSSMAG00000000450
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00940000155248.vb.g.b	ENSGT00940000155248.vb.g.a	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Eupecaria_C	ANCESTRAL SPECIES	52	ENSGT00940000155009.b	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000168817	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	71								ENSGT00940000158614	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000153571.b	ENSGT00940000175756	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00940000160303.a.b	ENSGT00390000008846	ENSGT00940000163243	ENSGT00950000182913.A.b.a	ENSGT00940000155248.vb.g.b	ENSGT00390000002188
European seabass	MODERN SPECIES	15	desmb (ENSDLAG00005022655)	ENSDLAG00005028614	ENSDLAG00005031759	ENSDLAG00005031855	ENSDLAG00005026780	ENSDLAG00005022600	ENSDLAG00005028321	ENSDLAG00005022246	ENSDLAG00005022221	CLASP1 (ENSDLAG00005019710)	ENSDLAG00005019511	inhbb (ENSDLAG00005033827)	ENSDLAG00005031813	faimb (ENSDLAG00005021705)	ENSDLAG00005016647	ENSDLAG00005013518 #22	gbx2 (ENSDLAG00005031666) #23	ENSDLAG00005004762	ENSDLAG00005004668	ENSDLAG00005033398	ENSDLAG00005017803	ENSDLAG00005034379	ENSDLAG00005031761	ENSDLAG00005021283	ENSDLAG00005031621	ENSDLAG00005029677	ENSDLAG00005030035	ENSDLAG00005029525	ENSDLAG00005033495	ENSDLAG00005034688	ENSDLAG00005003887
Large yellow croaker	MODERN SPECIES	486	pou3f3b (ENSLCRG00005005109)	mrps9 (ENSLCRG00005005112)	SLAIN1 (ENSLCRG00005005207)	FAM171B (ENSLCRG00005005210)	zswim2 (ENSLCRG00005005211)	ENSLCRG00005005215	ENSLCRG00005005225	clcn4 (ENSLCRG00005005283)	ENSLCRG00005005464	ENSLCRG00005005469	CLASP1 (ENSLCRG00005005519)	gli2b (ENSLCRG00005008478)	INHBB (ENSLCRG00005008479)	ENSLCRG00005008480	faimb (ENSLCRG00005008481)	AGAP1 (ENSLCRG00005008491) #22	gbx2 (ENSLCRG00005009560) #23	ENSLCRG00005009563	ENSLCRG00005009564	fbxo3 (ENSLCRG00005009567)	ENSLCRG00005009570	ENSLCRG00005009572	SH3YL1 (ENSLCRG00005009575)	ENSLCRG00005009581	ENSLCRG00005009585	lipt1 (ENSLCRG00005009586)	ENSLCRG00005009588	ENSLCRG00005009593	bco1l (ENSLCRG00005010437)	ENSLCRG00005010522	dnaaf4 (ENSLCRG00005000811)
Gilthead seabream	MODERN SPECIES	16	ENSSAUG00010026259	ENSSAUG00010026252	ENSSAUG00010026249	ENSSAUG00010026247	ENSSAUG00010026227	ENSSAUG00010026218	ENSSAUG00010026217	clcn4 (ENSSAUG00010026096)	ENSSAUG00010026074	CLASP1 (ENSSAUG00010019591)	gli2b (ENSSAUG00010019244)	ENSSAUG00010019233	INHBB (ENSSAUG00010019229)	ENSSAUG00010019227	faimb (ENSSAUG00010019225)	AGAP1 (ENSSAUG00010017889) #22	gbx2 (ENSSAUG00010017866) #23	ENSSAUG00010027283	ENSSAUG00010027281	ephx2 (ENSSAUG00010027279)	plaat1l (ENSSAUG00010027276)	ZNF513 (ENSSAUG00010027275)	dusp27 (ENSSAUG00010027272)	ENSSAUG00010027271	ENSSAUG00010027269	cybb (ENSSAUG00010027164)	dynlt3 (ENSSAUG00010027157)	rpgrb (ENSSAUG00010027153)	tdp2b (ENSSAUG00010027152)	nhej1 (ENSSAUG00010027151)	ihhb (ENSSAUG00010027150)
Perciformes	ANCESTRAL SPECIES	27	ENSGT00940000155009.b	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00940000166042.a	ENSGT01090000260051.b.b.dc.a #26	ENSGT01030000235020	ENSGT00940000153737.b.g.a	ENSGT00940000165332.C	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f
Cottioidei	ANCESTRAL SPECIES	49														ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000164897.a.b	ENSGT00390000007225	ENSGT00940000159969.b.a.b	ENSGT00510000048137	ENSGT00940000154607.a	ENSGT00390000008846	ENSGT00940000163243	ENSGT00950000182913.A.b.a	ENSGT00940000155248.vb.g.a	ENSGT00390000002188	ENSGT00390000002143.b.b	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.b.a #32	ENSGT00940000158714.c
Lumpfish	MODERN SPECIES	11	ENSCLMG00005003774	ahr1b (ENSCLMG00005003569)	ENSCLMG00005003564	mfsd6a (ENSCLMG00005003560)	nab1a (ENSCLMG00005003557)	ENSCLMG00005003536	stat1a (ENSCLMG00005003533)	mstna (ENSCLMG00005003530)	ENSCLMG00005003523	sumo1 (ENSCLMG00005003518)	MAP3K2 (ENSCLMG00005003513)	ENSCLMG00005003499	tmem198b (ENSCLMG00005003498)	INHBB (ENSCLMG00005003497)	ENSCLMG00005003496	AGAP1 (ENSCLMG00005003260) #22	gbx2 (ENSCLMG00005003235) #23	ENSCLMG00005003232	dph3 (ENSCLMG00005003230)	ENSCLMG00005003228	ENSCLMG00005003224	ENSCLMG00005003220	lipt1 (ENSCLMG00005003217)	bco1l (ENSCLMG00005002944)	ENSCLMG00005002917	ENSCLMG00005002889	iqcb1 (ENSCLMG00005002815)	EFR3B (ENSCLMG00005013102)	mlpha (ENSCLMG00005013099) #29	ENSCLMG00005013098 #32	ENSCLMG00005013097
Perciformes_a	ANCESTRAL SPECIES	29	ENSGT00940000164444.b	ENSGT00940000155009.b	ENSGT00940000166110	ENSGT00940000154851.A	ENSGT00940000159723	ENSGT00940000178221	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00950000183138.a.b.r.a #29	ENSGT00530000063564.b.a.a #32	ENSGT00940000158714.c	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT00940000166042.a	ENSGT01090000260051.b.b.dc.a #26	ENSGT01030000235020	ENSGT00940000165332.C	ENSGT00940000156153.y.b	ENSGT00500000044890.a.a.f
Channel bull blenny	MODERN SPECIES	11				ENSCGOG00000013362	GLI2 (ENSCGOG00000013349)	ENSCGOG00000013345	ENSCGOG00000013335	ENSCGOG00000013334	ENSCGOG00000013328	ENSCGOG00000013326	ENSCGOG00000013324	ENSCGOG00000013321	INHBB (ENSCGOG00000013320)	ENSCGOG00000013312	faimb (ENSCGOG00000013310)	AGAP1 (ENSCGOG00000010834) #22	gbx2 (ENSCGOG00000010796) #23	ENSCGOG00000010701	si:ch211-114n24.6 (ENSCGOG00000010204)	dnpep (ENSCGOG00000009207)	desmb (ENSCGOG00000008733)	tmem198b (ENSCGOG00000008704)	ENSCGOG00000008696	MAP3K2 (ENSCGOG00000008653)	sumo1 (ENSCGOG00000008619)	ENSCGOG00000008609	ENSCGOG00000008604	ENSCGOG00000008602	mstna (ENSCGOG00000008596)	stat1a (ENSCGOG00000008365)	glsa (ENSCGOG00000006267)
Pike perch	MODERN SPECIES	9	ENSSLUG00000026099	dynlt3 (ENSSLUG00000026103)	cybb (ENSSLUG00000026104)	ENSSLUG00000026105	dusp27 (ENSSLUG00000026106)	ENSSLUG00000000117	ENSSLUG00000000123	plaat1l (ENSSLUG00000000128)	clcn4 (ENSSLUG00000000339)	ENSSLUG00000000892	CLASP1 (ENSSLUG00000000970)	gli2b (ENSSLUG00000001131)	INHBB (ENSSLUG00000001146)	ENSSLUG00000001151	faimb (ENSSLUG00000001156)	AGAP1 (ENSSLUG00000001214) #22	ENSSLUG00000001374	gbx2 (ENSSLUG00000001377) #23	ENSSLUG00000001381	EFR3B (ENSSLUG00000001408)	pomca (ENSSLUG00000001596)	mlpha (ENSSLUG00000001612) #29	ENSSLUG00000001629 #32	st6gal2b (ENSSLUG00000001670)	ENSSLUG00000001732	ENSSLUG00000001783	ENSSLUG00000001810
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1908																ENSLBEG00000005094 #22	gbx2 (ENSLBEG00000005114) #23
Ballan wrasse	MODERN SPECIES	301	rpgrb (ENSLBEG00000012095)	dynlt3 (ENSLBEG00000012144)	cybb (ENSLBEG00000012180)	ENSLBEG00000012231	ENSLBEG00000012320	ENSLBEG00000012426	plaat1l (ENSLBEG00000012445)	ephx2 (ENSLBEG00000012469)	clcn4 (ENSLBEG00000012510)	ENSLBEG00000012546	CLASP1 (ENSLBEG00000012601)	gli2b (ENSLBEG00000012757)	INHBB (ENSLBEG00000012869)	ENSLBEG00000012880	FAIM (ENSLBEG00000012895)	ENSLBEG00000012910 #22
Tetraodontidae	ANCESTRAL SPECIES	26	ENSGT00390000014242.k.c	ENSGT00940000159616	ENSGT00940000166110	ENSGT00940000154851.A.l	ENSGT00940000159723	ENSGT00940000158687.a.b	ENSGT00940000156634.b	ENSGT00940000158614	ENSGT00940000158265	ENSGT00940000165301.b	ENSGT00940000154817.b.b.b.p	ENSGT00940000159213.q.b	ENSGT00940000159862.b	ENSGT00940000155984.i.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00390000016811.g.g.a	ENSGT00390000002143.b.b	ENSGT00390000002188	ENSGT00950000182913.A.b.a	ENSGT00940000163243	ENSGT00940000179865	ENSGT00390000008846	ENSGT00940000160303.a.b	ENSGT00940000154607.a	ENSGT00510000048137	ENSGT00940000159969.b.a.b	ENSGT00940000175756	ENSGT00940000172021	ENSGT00940000153571.b
Tetraodon	MODERN SPECIES	18	ENSTNIG00000008898	tdp2b (ENSTNIG00000010260)	ENSTNIG00000010259	cybb (ENSTNIG00000010258)	ENSTNIG00000001786	ZNF513 (ENSTNIG00000010256)	ENSTNIG00000010255	clcn4 (ENSTNIG00000010254)	ENSTNIG00000010253	CLASP1 (ENSTNIG00000010252)	dusp27 (ENSTNIG00000010257)	gli2b (ENSTNIG00000010251)	INHBB (ENSTNIG00000010250)	ENSTNIG00000010249	faimb (ENSTNIG00000010248)	AGAP1 (ENSTNIG00000003647) #22	gbx2 (ENSTNIG00000005183) #23	ENSTNIG00000000305	ENSTNIG00000000013	pomca (ENSTNIG00000000987)	ENSTNIG00000002247	ENSTNIG00000006578	bco1l (ENSTNIG00000006579)	ENSTNIG00000006580	lipt1 (ENSTNIG00000006581)	ENSTNIG00000000872	ENSTNIG00000006582	fbxo3 (ENSTNIG00000006583)	f2 (ENSTNIG00000006584)	ENSTNIG00000006585	ENSTNIG00000001541
Fugu	MODERN SPECIES	20	bin1b (ENSTRUG00000012332)	nhej1 (ENSTRUG00000020336)	tdp2b (ENSTRUG00000012085)	gp91phox (ENSTRUG00000011809)	ENSTRUG00000011796	dusp27 (ENSTRUG00000011751)	ZNF513 (ENSTRUG00000011706)	plaat1l (ENSTRUG00000023005)	ENSTRUG00000011454	ENSTRUG00000011217	CLASP1 (ENSTRUG00000029577)	gli2b (ENSTRUG00000010444)	INHBB (ENSTRUG00000030143)	ENSTRUG00000025204	faimb (ENSTRUG00000010234)	AGAP1 (ENSTRUG00000009878) #22	gbx2 (ENSTRUG00000009833) #23	pomc (ENSTRUG00000009747)	EFR3B (ENSTRUG00000029981)	ENSTRUG00000009218	bco1l (ENSTRUG00000007927)	ENSTRUG00000007772	ENSTRUG00000022217	lipt1 (ENSTRUG00000007709)	ENSTRUG00000028768	ENSTRUG00000024183	ENSTRUG00000007559	ENSTRUG00000021198	ENSTRUG00000027566	ENSTRUG00000030671	ENSTRUG00000033245
Protacanthopterygii	ANCESTRAL SPECIES	125												ENSGT00950000183022.a.b	ENSGT00390000010308	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00930000151029.i.b	ENSGT00640000091496	ENSGT00940000156597.a.b.b.a	ENSGT00940000157652	ENSGT01030000234570.d.a.p	ENSGT00530000063186.b.b	ENSGT00940000154695.d.b.b	ENSGT00940000159224.b #34	ENSGT00940000165586.b	ENSGT00940000155235.k.b	ENSGT00940000155408.o.b	ENSGT00940000157249	ENSGT00940000154453.a.b.a.a.b	ENSGT00940000162639.b
Northern pike	MODERN SPECIES	21	ENSELUG00000026342	ENSELUG00000028550	cavin2b (ENSELUG00000003306)	vps16 (ENSELUG00000003287)	rgn (ENSELUG00000003236)	zgc:112023 (ENSELUG00000001412)	ENSELUG00000024817	nabp1b (ENSELUG00000003192)	ENSELUG00000003175	ENSELUG00000003147	ENSELUG00000003136	SLC19A2 (ENSELUG00000003124)	atg3 (ENSELUG00000003117)	ENSELUG00000003103	faimb (ENSELUG00000003092)	AGAP1 (ENSELUG00000003061) #22	ENSELUG00000032508	gbx2 (ENSELUG00000002965) #23	iqca1 (ENSELUG00000002950) #25	ENSELUG00000026109	ACKR3 (ENSELUG00000002929) #26	mlpha (ENSELUG00000002904) #29	ENSELUG00000002824 #32	SNX4 (ENSELUG00000002675)	UNC80 (ENSELUG00000032668)	ENSELUG00000002609	acadl (ENSELUG00000002558)	mylz3 (ENSELUG00000033756)	lancl1 (ENSELUG00000002523)	erbb4a (ENSELUG00000002509)	RAMP1 (ENSELUG00000002486) #34
Salmoninae	ANCESTRAL SPECIES	473								ENSGT00390000010308.g.a	ENSGT00950000183022.a.b	ENSGT00950000182900.C.ib	ENSGT00510000047120.gb.f	ENSGT00510000047120.gb.e	ENSGT00390000010308.h	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23	ENSGT00940000154067.c.u.b.b #25	ENSGT01090000260051.b.b.dc.a #26	ENSGT00940000166042.a	ENSGT00950000183138.a.b.r.a.c #29	ENSGT00530000063564.b.a.a #32	ENSGT00930000151029.i.b.c.a.b	ENSGT00640000091496.n	ENSGT00940000156597.a.b.b.a.a.a.b	ENSGT00940000157652	ENSGT01030000234570.d.a.p	ENSGT00530000063186.b.b.o	ENSGT00940000154695.d.b.b.b.a
Salmoninae_a	ANCESTRAL SPECIES	59	ENSGT00940000154645.B.d	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a	ENSGT00940000156056.A.j	ENSGT00950000182910.a.a.d	ENSGT00390000003896.e	ENSGT00390000014995.k	ENSGT00940000161625.m.c	ENSGT00510000047120.gb.e	ENSGT00510000047120.gb.f	ENSGT00950000182900.C.ib	ENSGT00950000183022.a.b	ENSGT00390000010308.h	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b.c #23	ENSGT00940000154067.c.u.b.a.b #25
Oncorhynchus	ANCESTRAL SPECIES	66	ENSGT00940000156186.l.a.c	ENSGT00940000155675.p.b	ENSGT00950000183140.a.a.k.b	ENSGT00940000156056.A.j.c	ENSGT00950000182910.a.a.d	ENSGT00390000003896.e	ENSGT00390000014995.k	ENSGT00940000161625.m.c	ENSGT00940000155812.u.b	ENSGT00510000047120.gb.f.a.b	ENSGT00950000182900.C.ib	ENSGT00950000183022.a.b	ENSGT00390000010308.h	ENSGT00940000164470.b	ENSGT00390000007364.j	ENSGT00940000154793.C #22	ENSGT00940000154365.a.b.d #23	ENSGT01070000255150
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000066202	ENSOMYG00000008833	vps16 (ENSOMYG00000008747)	ENSOMYG00000069912	zgc:112023 (ENSOMYG00000008315)	ENSOMYG00000008669	ENSOMYG00000055339	ENSOMYG00000008005	ENSOMYG00000007705	ENSOMYG00000007211	ENSOMYG00000007143	ENSOMYG00000006806	faimb (ENSOMYG00000006656)	ENSOMYG00000062407	ENSOMYG00000070608	AGAP1 (ENSOMYG00000064555) #22	gbx2 (ENSOMYG00000070878) #23	iqca1 (ENSOMYG00000076046) #25	ENSOMYG00000073042	ACKR3 (ENSOMYG00000062182) #26	mlpha (ENSOMYG00000052308) #29	ENSOMYG00000006329 #32	ENSOMYG00000005876	ENSOMYG00000005315	ENSOMYG00000049755	ENSOMYG00000049463	ENSOMYG00000076974	ENSOMYG00000012101	lancl1 (ENSOMYG00000012047)	ENSOMYG00000072101	ENSOMYG00000063731 #34
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000030528	vps16 (ENSOMYG00000008526)	rgn (ENSOMYG00000008411)	zgc:112023 (ENSOMYG00000008172)	ENSOMYG00000074108	ENSOMYG00000057202	ENSOMYG00000054823	ENSOMYG00000049356	ENSOMYG00000075638	ENSOMYG00000050828	ENSOMYG00000073976	ENSOMYG00000052901	ENSOMYG00000066012	ENSOMYG00000063398	faimb (ENSOMYG00000056887)	ENSOMYG00000053361 #22	ENSOMYG00000076474	gbx2 (ENSOMYG00000012559) #23	ENSOMYG00000002871	ENSOMYG00000002791	ENSOMYG00000068512	ccnt2b (ENSOMYG00000002822)	ENSOMYG00000048525	ENSOMYG00000062480	ENSOMYG00000073774	rnd3a (ENSOMYG00000049796)	mmadhca (ENSOMYG00000058850)	LYPD6 (ENSOMYG00000052898)	KIF5C (ENSOMYG00000063803)	ENSOMYG00000057620	ORC4 (ENSOMYG00000024511)
Oncorhynchus_a	ANCESTRAL SPECIES	440																ENSGT00940000154793.C #22	ENSGT00940000154365.a.b.d #23	ENSGT01070000255150
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	34	stk16 (ENSOKIG00005049212)	ENSOKIG00005049214	atic (ENSOKIG00005049252)	fn1b (ENSOKIG00005049616)	ENSOKIG00005050160	faimb (ENSOKIG00005050166)	ENSOKIG00005050176	atg3 (ENSOKIG00005050186)	SLC19A2 (ENSOKIG00005050193)	ENSOKIG00005050197	MPC2 (ENSOKIG00005050208)	ENSOKIG00005050210	ENSOKIG00005050211	ENSOKIG00005050215	ENSOKIG00005050218	AGAP1 (ENSOKIG00005050224) #22	gbx2 (ENSOKIG00005050252) #23	ENSOKIG00005050254	ENSOKIG00005050257	iqca1 (ENSOKIG00005050260) #25	ENSOKIG00005050267	ACKR3 (ENSOKIG00005050269) #26	trim63a (ENSOKIG00005050272)	mlpha (ENSOKIG00005050274) #29	ENSOKIG00005050295 #32	SNX4 (ENSOKIG00005050308)	UNC80 (ENSOKIG00005050319)	ENSOKIG00005050332	acadl (ENSOKIG00005050360)	mylz3 (ENSOKIG00005050377)	lancl1 (ENSOKIG00005050385)
Coho salmon	MODERN SPECIES	495																AGAP1 (ENSOKIG00005041114) #22
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	170				ENSGT00390000003896.e	ENSGT00390000014995.k.a	ENSGT00940000161625.m.c	ENSGT00940000155812.s.a	ENSGT00510000047120.gb.e.b	ENSGT00950000182900.C.ib.f	ENSGT00510000047120.gb.f	ENSGT00950000182900.C.ib.e	ENSGT00950000183022.a.b	ENSGT00390000010308.g.a	ENSGT00940000164470.b.a	ENSGT00390000007364.j	ENSGT00940000154793.C.s #22	ENSGT00940000154365.a.b.c #23	ENSGT00940000154067.c.u.b.a.a.a #25	ENSGT00940000166042.a.g	ENSGT00950000183138.a.b.r.a.c #29	ENSGT00530000063564.b.b.a #32	ENSGT00530000063085.A.a.d.b
River trout	MODERN SPECIES	32	arl6ip6 (ENSSTUG00000040033)	eef1b2 (ENSSTUG00000039946)	ndufs1 (ENSSTUG00000039871)	ENSSTUG00000039539	vps16 (ENSSTUG00000038908)	rgn (ENSSTUG00000038871)	zgc:112023 (ENSSTUG00000038839)	nabp1b (ENSSTUG00000038834)	ENSSTUG00000038828	MPC2 (ENSSTUG00000044906)	ENSSTUG00000044865	SLC19A2 (ENSSTUG00000044858)	atg3 (ENSSTUG00000044814)	ENSSTUG00000044801	faimb (ENSSTUG00000044778)	AGAP1 (ENSSTUG00000042119) #22	gbx2 (ENSSTUG00000042014) #23	ENSSTUG00000042005	iqca1 (ENSSTUG00000041806) #25	ACKR3 (ENSSTUG00000041780) #26	trim63a (ENSSTUG00000041773)	mlpha (ENSSTUG00000041743) #29	ENSSTUG00000041724	ENSSTUG00000041713 #32	ENSSTUG00000041681	SNX4 (ENSSTUG00000040732)	UNC80 (ENSSTUG00000040515)	ENSSTUG00000040481	acadl (ENSSTUG00000040211)	ENSSTUG00000040179	mylz3 (ENSSTUG00000040144)
Atlantic salmon	MODERN SPECIES	8	ENSSSAG00000081759	ENSSSAG00000042777	ENSSSAG00000101211	ENSSSAG00000010129	vps16 (ENSSSAG00000042745)	ENSSSAG00000017401	zgc:112023 (ENSSSAG00000017212)	ENSSSAG00000084740	ENSSSAG00000106927	ENSSSAG00000015933	ENSSSAG00000015880	ENSSSAG00000008085	ENSSSAG00000015819	ENSSSAG00000059564	faimb (ENSSSAG00000099711)	AGAP1 (ENSSSAG00000096020) #22	gbx2 (ENSSSAG00000033868) #23	ENSSSAG00000006958	iqca1 (ENSSSAG00000087456) #25	ENSSSAG00000093707	ACKR3 (ENSSSAG00000095247) #26	trim63a (ENSSSAG00000084573)	mlpha (ENSSSAG00000072050) #29	ENSSSAG00000009319 #32	ENSSSAG00000113483	ENSSSAG00000016512	ENSSSAG00000010457	ENSSSAG00000093296	ENSSSAG00000098859	ENSSSAG00000042691	ACADL (ENSSSAG00000041811)
Salmo	ANCESTRAL SPECIES	200																ENSGT00940000154793.C.t #22	ENSGT00940000154067.c.u.b.b #25	ENSGT01090000260051.b.b.dc.a #26	ENSGT00940000166042.a.h	ENSGT00950000183138.a.b.r.a.d #29	ENSGT00530000063564.b.a.a.k #32	ENSGT00530000063085.A.a.d.a	ENSGT00640000091496.m.a	ENSGT00940000156597.a.b.b.a.b	ENSGT00940000157652.j.a	ENSGT01030000234570.d.a.p.b	ENSGT00530000063186.b.b.o.a	ENSGT00940000154695.d.b.b.b.a	ENSGT00940000159224.b.a.a #34	ENSGT00940000165586.b.d
Atlantic salmon	MODERN SPECIES	7	ENSSSAG00000010250	ENSSSAG00000100401	ENSSSAG00000052189	ENSSSAG00000117507	ENSSSAG00000099607	vps16 (ENSSSAG00000010147)	ENSSSAG00000091366	ENSSSAG00000008145	ENSSSAG00000017087	ENSSSAG00000095768	ENSSSAG00000015899	ENSSSAG00000041380	ENSSSAG00000008057	ENSSSAG00000106202	faimb (ENSSSAG00000040984)	AGAP1 (ENSSSAG00000104691) #22	ENSSSAG00000093737	gbx2 (ENSSSAG00000097677) #23	iqca1 (ENSSSAG00000054015) #25	ENSSSAG00000068199	ENSSSAG00000100669	ACKR3 (ENSSSAG00000083570) #26	trim63a (ENSSSAG00000092341)	mlpha (ENSSSAG00000053986) #29	ENSSSAG00000053949 #32	ENSSSAG00000037247	ENSSSAG00000053920	ENSSSAG00000008490	ENSSSAG00000117412	ENSSSAG00000097794	ENSSSAG00000041718
River trout	MODERN SPECIES	36	GULP1 (ENSSTUG00000023168)	ENSSTUG00000023389	ENSSTUG00000023400	ENSSTUG00000023408	vps16 (ENSSTUG00000023447)	rgn (ENSSTUG00000023598)	zgc:112023 (ENSSTUG00000023704)	nabp1b (ENSSTUG00000023787)	ENSSTUG00000023794	MPC2 (ENSSTUG00000023826)	ENSSTUG00000023832	SLC19A2 (ENSSTUG00000023860)	atg3 (ENSSTUG00000023871)	ENSSTUG00000023978	faimb (ENSSTUG00000023993)	AGAP1 (ENSSTUG00000024059) #22	gbx2 (ENSSTUG00000026297) #23	IQCA1 (ENSSTUG00000026309) #25	iqca1 (ENSSTUG00000026315) #25	ACKR3 (ENSSTUG00000026338) #26	trim63a (ENSSTUG00000026345)	mlpha (ENSSTUG00000026353) #29	LRRFIP1 (ENSSTUG00000026404) #32	ENSSTUG00000026567	ENSSTUG00000026579	SNX4 (ENSSTUG00000026617)	ENSSTUG00000026830	UNC80 (ENSSTUG00000026834)	mylz3 (ENSSTUG00000026860)	lancl1 (ENSSTUG00000026873)	ENSSTUG00000026883
Huchen	DUPLICATION
Huchen	MODERN SPECIES	10895																ENSHHUG00000018891 #22
Huchen	MODERN SPECIES	9170																ENSHHUG00000006258 #22
Huchen	MODERN SPECIES	7448															ENSHHUG00000002104 ##22	ENSHHUG00000002087 #22
Huchen	MODERN SPECIES	11113																ENSHHUG00000013234 #22
Elephant shark	MODERN SPECIES	1634													TWIST2 (ENSCMIG00000014123)	hdac4 (ENSCMIG00000014214)	ENSCMIG00000014616	AGAP1 (ENSCMIG00000014786) #22	gbx2 (ENSCMIG00000015108) #23	ENSCMIG00000015109	ENSCMIG00000015111 #25	ackr3b (ENSCMIG00000015114) #26	cops8 (ENSCMIG00000015116)	ENSCMIG00000015121	COL6A3 (ENSCMIG00000015124) ##28	ENSCMIG00000015132 ##28	ENSCMIG00000015138 #28	ENSCMIG00000015145 #29	ENSCMIG00000015147 #29	ENSCMIG00000015149	CARF (ENSCMIG00000015152)	wdr12 (ENSCMIG00000015173)	ical1 (ENSCMIG00000015236)
Cyclostomata	ANCESTRAL SPECIES	337																ENSGT00940000154793.C #22	ENSGT00940000154365.a.b #23
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	295						ENSPMAG00000008868	ENSPMAG00000008872	SLC11A2 (ENSPMAG00000008875)	ENSPMAG00000008905	ENSPMAG00000008907	ENSPMAG00000008908	ENSPMAG00000010205	ENSPMAG00000008909	ZNF142 (ENSPMAG00000008925)	ubtfl (ENSPMAG00000008940)	ENSPMAG00000008958 #22	PRIM1 (ENSPMAG00000008970)	ENSPMAG00000010206 #26	ENSPMAG00000008982 #29
Lamprey	MODERN SPECIES	1923																ENSPMAG00000001670 #22	ENSPMAG00000001664	ENSPMAG00000001661	USP15 (ENSPMAG00000001614)
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	912									ENSEBUG00000005992	ENSEBUG00000009385	ENSEBUG00000016104	ENSEBUG00000000933	ENSEBUG00000011835	ENSEBUG00000008291	ENSEBUG00000002755	ENSEBUG00000009715 #22	ENSEBUG00000008379 #23	ENSEBUG00000014561	ENSEBUG00000000589	ENSEBUG00000011650	ENSEBUG00000016399	ENSEBUG00000010391	ENSEBUG00000011440	ENSEBUG00000005459	ENSEBUG00000006515	ENSEBUG00000010470	chsy1 (ENSEBUG00000015487)	ENSEBUG00000010797	ENSEBUG00000004082	ENSEBUG00000006880	UBE2Q1 (ENSEBUG00000013056)
Hagfish	MODERN SPECIES	361									ENSEBUG00000003937	lrrn1 (ENSEBUG00000004804)	ENSEBUG00000002679	ENSEBUG00000002242	ENSEBUG00000012895	ENSEBUG00000007000	ENSEBUG00000012507	ENSEBUG00000006336 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154793.A ##22
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154793.A.a ##22
Lamprey	MODERN SPECIES	683																AGAP1 (ENSPMAG00000005792) ##22
Hagfish	MODERN SPECIES	1122										ENSEBUG00000001040	ENSEBUG00000015116	ENSEBUG00000005514	ENSEBUG00000012594	ndufb3 (ENSEBUG00000011870)	ENSEBUG00000000442	ENSEBUG00000013334 ##22	rbm45 (ENSEBUG00000007042)	ENSEBUG00000008367	ENSEBUG00000011941	ENSEBUG00000013166	rpe (ENSEBUG00000003712)	ENSEBUG00000016505	ENSEBUG00000003107	ENSEBUG00000004594	ENSEBUG00000012662	ubqln4 (ENSEBUG00000008926)	ENSEBUG00000015695	ENSEBUG00000009731	ENSEBUG00000006596	ENSEBUG00000008551	gtf2a2 (ENSEBUG00000004457)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154793.A.b ##22
Hagfish	MODERN SPECIES	949															ENSEBUG00000007871	ENSEBUG00000001780 ##22	ENSEBUG00000005285
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Lamprey	MODERN SPECIES	2835																ENSPMAG00000005839 ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Amniota	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Sauria	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Episquamata	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Indian cobra	MODERN SPECIES	97																ENSNNAG00000010526 ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154793.B ##22
Huchen	MODERN SPECIES	7448																ENSHHUG00000002104 ##22	ENSHHUG00000002087 #22