Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00390000003290 #7	ENSGT00940000156334 #8	ENSGT00940000158165 #9	ENSGT00390000005848 #10	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #15	ENSGT00940000157983 #16	ENSGT00390000010491 #17	ENSGT00540000070023.c.b.b ##18	ENSGT00940000155210.a.b #19	ENSGT00940000156910 #20	ENSGT00510000046843.b #21	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #23	ENSGT00940000158177.b #24	ENSGT00940000158968 #25	ENSGT00940000157574 #26	ENSGT00730000111529 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352 #37	ENSGT00640000091574
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000155016	ENSGT00390000003290 #7	ENSGT00940000156334 #8	ENSGT00940000158165 #9	ENSGT00390000005848 #10	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #15	ENSGT00940000157983.e.a ##16	ENSGT00390000010491 #17	ENSGT00540000070023.c.b.b.f ##18	ENSGT00940000155210.a.b #19	ENSGT00940000156910 #20	ENSGT00510000046843.b #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #23	ENSGT00940000158177.b #24	ENSGT00940000158968 #25	ENSGT00940000157574 #26	ENSGT00730000111529 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352 #37	ENSGT00640000091574
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000155016	ENSGT00390000003290 #7	ENSGT00940000156334 #8	ENSGT00940000158165 #9	ENSGT00390000005848 #10	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #15	ENSGT00940000157983.e.a ##16	ENSGT00390000010491 #17	ENSGT00540000070023.c.b.b.f ##18	ENSGT00940000155210.a.b #19	ENSGT00940000156910 #20	ENSGT00510000046843.b #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #23	ENSGT00940000158177.b #24	ENSGT00940000158968 #25	ENSGT00940000157574 #26	ENSGT00730000111529 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352 #37	ENSGT00640000091574
Guinea pig	MODERN SPECIES	9	VEZT (ENSCPOG00000009336) #7	FGD6 (ENSCPOG00000012303) #8	NR2C1 (ENSCPOG00000007507) #9	NDUFA12 (ENSCPOG00000010154) #10	ENSCPOG00000019272 #11	TMCC3 (ENSCPOG00000034352) #12	CEP83 (ENSCPOG00000008997) #13	PLXNC1 (ENSCPOG00000008984) #14	CRADD (ENSCPOG00000039871) #15	SOCS2 (ENSCPOG00000008235) #16	ENSCPOG00000030015 #17	ENSCPOG00000008581 #18	ENSCPOG00000008578 #19	EEA1 (ENSCPOG00000014506) #20	PLEKHG7 (ENSCPOG00000014503) #21	BTG1 (ENSCPOG00000040699) #22	DCN (ENSCPOG00000034660) #23	LUM (ENSCPOG00000036998) #24	KERA (ENSCPOG00000000675) #25	EPYC (ENSCPOG00000006137) #26	CCER1 (ENSCPOG00000023502) #27	ENSCPOG00000040691 #28	ATP2B1 (ENSCPOG00000015527) #29	POC1B (ENSCPOG00000015525) #30	DUSP6 (ENSCPOG00000030214) #31	KITLG (ENSCPOG00000031249) #32	TMTC3 (ENSCPOG00000012492) #33	CEP290 (ENSCPOG00000033255) #34	C12orf29 (ENSCPOG00000039127) #35	C12orf50 (ENSCPOG00000012468) #36	MGAT4C (ENSCPOG00000013992) #37
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000155016	ENSGT00390000003290 #7	ENSGT00940000156334 #8	ENSGT00940000158165 #9	ENSGT00390000005848 #10	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #15	ENSGT00940000157983.e.a ##16	ENSGT00390000010491 #17	ENSGT00540000070023.c.b.b.f ##18	ENSGT00940000155210.a.b #19	ENSGT00940000156910 #20	ENSGT00510000046843.b #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #23	ENSGT00940000158177.b #24	ENSGT00940000158968 #25	ENSGT00940000157574 #26	ENSGT00730000111529 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352 #37	ENSGT00640000091574
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00390000003290 #7	ENSGT00940000156334 #8	ENSGT00940000158165 #9	ENSGT00390000005848 #10	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #15	ENSGT00940000157983 #16	ENSGT00390000010491.e #17	ENSGT00540000070023.d #18	ENSGT00940000155210.a.b #19	ENSGT00940000156910 #20	ENSGT00510000046843.b #21	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #23	ENSGT00940000158177.b #24	ENSGT00940000158968 #25	ENSGT00940000157574 #26	ENSGT00730000111529 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352 #37	ENSGT00640000091574
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000003290 #7	ENSGT00940000156334 #8	ENSGT00940000158165 #9	ENSGT00390000005848 #10	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #15	ENSGT00940000157983 #16	ENSGT00390000010491.e.a #17	ENSGT00540000070023.d #18	ENSGT00940000155210.a.b #19	ENSGT00940000156910 #20	ENSGT00510000046843.b #21	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #23	ENSGT00940000158177.b #24	ENSGT00940000158968 #25	ENSGT00940000157574 #26	ENSGT00730000111529 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00390000009130.a.a.b.h	ENSGT00940000155352 #37
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000003290 #7	ENSGT00940000156334 #8	ENSGT00940000158165 #9	ENSGT00390000005848 #10	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #15	ENSGT00940000157983 #16	ENSGT00390000010491.e.a #17	ENSGT00540000070023.d #18	ENSGT00940000155210.a.b #19	ENSGT00940000156910 #20	ENSGT00510000046843.b #21	ENSGT00430000032851	ENSGT00950000182952.C #22	ENSGT00940000158382 #23	ENSGT00940000158177.b #24	ENSGT00940000158968 #25	ENSGT00940000157574 #26	ENSGT00730000111529 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00390000009130.a.a.b.h	ENSGT00940000155352 #37