Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00900000143786	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000032851	ENSGT00410000029301	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000163607	ENSGT00940000160413	ENSGT00540000073882	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00900000143786	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000032851	ENSGT00410000029301	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000163607	ENSGT00940000160413	ENSGT00540000073882	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000032851	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Glires	ANCESTRAL SPECIES	4	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000032851	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Rodentia	ANCESTRAL SPECIES	5	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00510000046843.b	ENSGT00430000032851	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00950000182952.C #20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Muroidea_A	DUPLICATION
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00710000106792.g	ENSGT00940000156123.b	ENSGT01050000245360 #7	ENSGT00940000155145.e #8	ENSGT00550000074964.i.a #9	ENSGT00940000155339 #10	ENSGT00950000182899.B.b #12	ENSGT00940000161768.B #11	ENSGT01030000234579.B.a #13	ENSGT00940000160471 #14	ENSGT00940000157481 #15	ENSGT00940000163385 #16	ENSGT00920000149445 #17	ENSGT00940000166354	ENSGT00940000154287.a.h #19	ENSGT00950000182952.C.xc.b #20	ENSGT01050000245028.C #33	ENSGT01050000245028.A #34	ENSGT00520000058743 #35	ENSGT00390000016292.g.a.a #36	ENSGT00390000007560 #37	ENSGT00390000003444	ENSGT00940000160787	ENSGT00390000017146.a	ENSGT00390000014814.b.s	ENSGT00950000183003.a.a.a.b	ENSGT00940000158026	ENSGT00940000157256	ENSGT00940000155075.a.b	ENSGT00390000002197	ENSGT00940000154400.b.d.b
Murinae	ANCESTRAL SPECIES	72														ENSGT00940000166354	ENSGT00940000154287.a.h #19	ENSGT00950000182952.C.xc.b #20
Rat	DUPLICATION
Rat	MODERN SPECIES	46	LOC691215 (ENSRNOG00000028189) #7	C1galt1c1 (ENSRNOG00000069353) #8	Mcts1 (ENSRNOG00000002563) #9	Cul4b (ENSRNOG00000002585) #10	LOC100360128 (ENSRNOG00000068620) #11	Lamp2 (ENSRNOG00000000164) #12	Atp1b4 (ENSRNOG00000007059) #13	Tmem255a (ENSRNOG00000028085) #14	Zbtb33 (ENSRNOG00000028899) #15	Rhox13 (ENSRNOG00000028050) #16	Rhox12 (ENSRNOG00000040033) #17	Rhox11 (ENSRNOG00000028044) #18	Rhox10 (ENSRNOG00000040026) #19	Btg1b (ENSRNOG00000047100) #20	RGD1566035 (ENSRNOG00000030645) #21	Btg1c (ENSRNOG00000032390) #22	ENSRNOG00000065266 #23	LOC691272 (ENSRNOG00000043229) #24	ENSRNOG00000070384 #25	Rhox9 (ENSRNOG00000050457) #26	Rhox7 (ENSRNOG00000063283) #27	Rhox8 (ENSRNOG00000031534) #28	ENSRNOG00000070486 #29	LOC100364002 (ENSRNOG00000052383) #30	Rhox5 (ENSRNOG00000046548) #31	Rhoxf2b (ENSRNOG00000040013) #32	Rhox3 (ENSRNOG00000053351) #33	Rhox4g (ENSRNOG00000058333) #34	RGD1560927 (ENSRNOG00000040008) #35	Rnf113a1 (ENSRNOG00000066548) #36	Ndufa1 (ENSRNOG00000071176) #37
Rat	MODERN SPECIES	46	AABR07038676.1 (ENSRNOG00000028202)	RGD1560124 (ENSRNOG00000063278)	LOC691215 (ENSRNOG00000028189) #7	C1galt1c1 (ENSRNOG00000069353) #8	Mcts1 (ENSRNOG00000002563) #9	Cul4b (ENSRNOG00000002585) #10	LOC100360128 (ENSRNOG00000068620) #11	Lamp2 (ENSRNOG00000000164) #12	Atp1b4 (ENSRNOG00000007059) #13	Tmem255a (ENSRNOG00000028085) #14	Zbtb33 (ENSRNOG00000028899) #15	Rhox13 (ENSRNOG00000028050) #16	Rhox12 (ENSRNOG00000040033) #17	Rhox11 (ENSRNOG00000028044) #18	Rhox10 (ENSRNOG00000040026) #19	Btg1b (ENSRNOG00000047100) #20	RGD1566035 (ENSRNOG00000030645) #21	Btg1c (ENSRNOG00000032390) #22	ENSRNOG00000065266 #23	LOC691272 (ENSRNOG00000043229) #24	ENSRNOG00000070384 #25	Rhox9 (ENSRNOG00000050457) #26	Rhox7 (ENSRNOG00000063283) #27	Rhox8 (ENSRNOG00000031534) #28	ENSRNOG00000070486 #29	LOC100364002 (ENSRNOG00000052383) #30	Rhox5 (ENSRNOG00000046548) #31	Rhoxf2b (ENSRNOG00000040013) #32	Rhox3 (ENSRNOG00000053351) #33	Rhox4g (ENSRNOG00000058333) #34	RGD1560927 (ENSRNOG00000040008) #35
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00950000182952.C.xc.a ##20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000010491	ENSGT00540000070023.c.b.b	ENSGT00940000155210.a.b	ENSGT00940000156910	ENSGT00950000182952.C.xc.a ##20	ENSGT00940000158382	ENSGT00940000158177.b	ENSGT00940000158968	ENSGT00940000157574	ENSGT00730000111529	ENSGT00940000158686	ENSGT00940000160413	ENSGT00940000163607	ENSGT00940000158342.b	ENSGT00390000018272	ENSGT00940000157538	ENSGT00730000111039.C	ENSGT00500000044938	ENSGT00920000149095.b	ENSGT00940000155352
Rat	MODERN SPECIES	17	Fgd6 (ENSRNOG00000054515)	Nr2c1 (ENSRNOG00000006983)	Ndufa12 (ENSRNOG00000007407)	Tmcc3 (ENSRNOG00000007713)	LOC100363642 (ENSRNOG00000007859)	Plxnc1 (ENSRNOG00000007970)	Cradd (ENSRNOG00000008507)	LOC103690821 (ENSRNOG00000050393)	Socs2 (ENSRNOG00000008965)	Mrpl42 (ENSRNOG00000042740)	Ube2n (ENSRNOG00000058053)	Nudt4 (ENSRNOG00000009094)	AABR07056686.1 (ENSRNOG00000021688)	ENSRNOG00000063295	Eea1 (ENSRNOG00000021681)	Btg1 (ENSRNOG00000004284) ##20	ENSRNOG00000068905	Dcn (ENSRNOG00000004554)	Lum (ENSRNOG00000004610)	Kera (ENSRNOG00000004635)	Epyc (ENSRNOG00000004717)	Ccer1 (ENSRNOG00000004875)	Atp2b1 (ENSRNOG00000004026)	Poc1b (ENSRNOG00000024450)	ENSRNOG00000069237	Dusp6 (ENSRNOG00000023896)	ENSRNOG00000067092	Kitlg (ENSRNOG00000005386)	Tmtc3 (ENSRNOG00000006749)	Cep290 (ENSRNOG00000056458)	RGD1307947 (ENSRNOG00000006973)