Euarchontoglires_A ANCESTRAL SPECIES 5 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000163320 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00950000182976.a.a ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00900000143486 #30 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 Glires ANCESTRAL SPECIES 4 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000163320 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00950000182976.a.a ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00900000143486 #30 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 Rodentia ANCESTRAL SPECIES 5 ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000163320 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Rodentia_B ANCESTRAL SPECIES 3 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Myomorpha ANCESTRAL SPECIES 2 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Muroidea ANCESTRAL SPECIES 5 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Muroidea_A ANCESTRAL SPECIES 22 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00390000018318.u.b.a.b.a.a.b #31 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 Murinae ANCESTRAL SPECIES 22 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00390000018318.u.b.a.b.a.a.b #31 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 Mus ANCESTRAL SPECIES 23 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Mus_A ANCESTRAL SPECIES 11 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Mus_B ANCESTRAL SPECIES 10 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Mus_C ANCESTRAL SPECIES 7 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Steppe mouse MODERN SPECIES 2939 Uhrf1bp1l (ENSMSIG00000017125) #20 Actr6 (ENSMSIG00000017172) #21 Scyl2 (ENSMSIG00000017210) #22 Slc17a8 (ENSMSIG00000017267) #23 Nr1h4 (ENSMSIG00000017294) #24 Gas2l3 (ENSMSIG00000017395) #25 Ano4 (ENSMSIG00000017553) #26 Slc5a8 (ENSMSIG00000017818) #27 ENSMSIG00000017854 #28 Utp20 (ENSMSIG00000017862) #29 ENSMSIG00000017985 #30 ENSMSIG00000017992 #31 Spic (ENSMSIG00000018013) #32 Mybpc1 (ENSMSIG00000018042) #33 spretus MODERN SPECIES 1 Ccdc38 (MGP_SPRETEiJ_G0016552) Amdhd1 (MGP_SPRETEiJ_G0016551) Hal (MGP_SPRETEiJ_G0016550) Lta4h (MGP_SPRETEiJ_G0016549) Elk3 (MGP_SPRETEiJ_G0016548) Cdk17 (MGP_SPRETEiJ_G0016547) Cfap54 (MGP_SPRETEiJ_G0016546) Nedd1 (MGP_SPRETEiJ_G0016545) Tmpo (MGP_SPRETEiJ_G0016544) Slc25a3 (MGP_SPRETEiJ_G0016543) Ikbip (MGP_SPRETEiJ_G0016542) Apaf1 (MGP_SPRETEiJ_G0016541) Anks1b (MGP_SPRETEiJ_G0016540) Uhrf1bp1l (MGP_SPRETEiJ_G0016539) #20 Actr6 (MGP_SPRETEiJ_G0016538) #21 Scyl2 (MGP_SPRETEiJ_G0016537) #22 Slc17a8 (MGP_SPRETEiJ_G0016536) #23 Nr1h4 (MGP_SPRETEiJ_G0016535) #24 Gas2l3 (MGP_SPRETEiJ_G0016534) #25 Ano4 (MGP_SPRETEiJ_G0016533) #26 Slc5a8 (MGP_SPRETEiJ_G0016532) #27 Utp20 (MGP_SPRETEiJ_G0016531) #29 Arl1 (MGP_SPRETEiJ_G0016530) Spic (MGP_SPRETEiJ_G0016529) #32 Mybpc1 (MGP_SPRETEiJ_G0016528) #33 MGP_SPRETEiJ_G0016527 Sycp3 (MGP_SPRETEiJ_G0016526) Gnptab (MGP_SPRETEiJ_G0016525) Dram1 (MGP_SPRETEiJ_G0016524) Washc3 (MGP_SPRETEiJ_G0016523) Nup37 (MGP_SPRETEiJ_G0016522) Mouse MODERN SPECIES 1 Ccdc38 (ENSMUSG00000036168) Amdhd1 (ENSMUSG00000015890) Hal (ENSMUSG00000020017) Lta4h (ENSMUSG00000015889) Elk3 (ENSMUSG00000008398) Cdk17 (ENSMUSG00000020015) Cfap54 (ENSMUSG00000020014) Nedd1 (ENSMUSG00000019988) Tmpo (ENSMUSG00000019961) Slc25a3 (ENSMUSG00000061904) Ikbip (ENSMUSG00000019975) Apaf1 (ENSMUSG00000019979) Anks1b (ENSMUSG00000058589) Uhrf1bp1l (ENSMUSG00000019951) #20 Actr6 (ENSMUSG00000019948) #21 Scyl2 (ENSMUSG00000069539) #22 Slc17a8 (ENSMUSG00000019935) #23 Nr1h4 (ENSMUSG00000047638) #24 Gas2l3 (ENSMUSG00000074802) #25 Ano4 (ENSMUSG00000035189) #26 Slc5a8 (ENSMUSG00000020062) #27 Utp20 (ENSMUSG00000004356) #29 Arl1 (ENSMUSG00000060904) Spic (ENSMUSG00000004359) #32 Mybpc1 (ENSMUSG00000020061) #33 Sycp3 (ENSMUSG00000020059) Chpt1 (ENSMUSG00000060002) Gnptab (ENSMUSG00000035311) Dram1 (ENSMUSG00000020057) Washc3 (ENSMUSG00000020056) Nup37 (ENSMUSG00000035351) Ryukyu mouse MODERN SPECIES 1 Ccdc38 (MGP_CAROLIEiJ_G0015734) Amdhd1 (MGP_CAROLIEiJ_G0015733) Hal (MGP_CAROLIEiJ_G0015732) Lta4h (MGP_CAROLIEiJ_G0015731) Elk3 (MGP_CAROLIEiJ_G0015730) Cdk17 (MGP_CAROLIEiJ_G0015729) Cfap54 (MGP_CAROLIEiJ_G0015728) Nedd1 (MGP_CAROLIEiJ_G0015727) MGP_CAROLIEiJ_G0015726 Slc25a3 (MGP_CAROLIEiJ_G0015725) Ikbip (MGP_CAROLIEiJ_G0015724) Apaf1 (MGP_CAROLIEiJ_G0015723) Anks1b (MGP_CAROLIEiJ_G0015722) Uhrf1bp1l (MGP_CAROLIEiJ_G0015721) #20 Actr6 (MGP_CAROLIEiJ_G0015720) #21 Scyl2 (MGP_CAROLIEiJ_G0015719) #22 Slc17a8 (MGP_CAROLIEiJ_G0015718) #23 Nr1h4 (MGP_CAROLIEiJ_G0015717) #24 Gas2l3 (MGP_CAROLIEiJ_G0015716) #25 Ano4 (MGP_CAROLIEiJ_G0015715) #26 Slc5a8 (MGP_CAROLIEiJ_G0015714) #27 Utp20 (MGP_CAROLIEiJ_G0015713) #29 Arl1 (MGP_CAROLIEiJ_G0015712) MGP_CAROLIEiJ_G0015711 #32 Mybpc1 (MGP_CAROLIEiJ_G0015710) #33 Sycp3 (MGP_CAROLIEiJ_G0015709) Chpt1 (MGP_CAROLIEiJ_G0015708) Gnptab (MGP_CAROLIEiJ_G0015707) Dram1 (MGP_CAROLIEiJ_G0015706) Washc3 (MGP_CAROLIEiJ_G0015705) Nup37 (MGP_CAROLIEiJ_G0015704) Shrew mouse MODERN SPECIES 22 Ccdc38 (MGP_PahariEiJ_G0031351) MGP_PahariEiJ_G0031352 Hal (MGP_PahariEiJ_G0031353) Lta4h (MGP_PahariEiJ_G0031354) Elk3 (MGP_PahariEiJ_G0031355) Cdk17 (MGP_PahariEiJ_G0031356) Cfap54 (MGP_PahariEiJ_G0031357) Nedd1 (MGP_PahariEiJ_G0031358) Tmpo (MGP_PahariEiJ_G0031359) Slc25a3 (MGP_PahariEiJ_G0031360) Ikbip (MGP_PahariEiJ_G0031361) Apaf1 (MGP_PahariEiJ_G0031362) Anks1b (MGP_PahariEiJ_G0031363) Uhrf1bp1l (MGP_PahariEiJ_G0031364) #20 Actr6 (MGP_PahariEiJ_G0031365) #21 Scyl2 (MGP_PahariEiJ_G0031366) #22 Slc17a8 (MGP_PahariEiJ_G0031367) #23 Nr1h4 (MGP_PahariEiJ_G0031368) #24 Gas2l3 (MGP_PahariEiJ_G0031369) #25 Ano4 (MGP_PahariEiJ_G0031370) #26 Slc5a8 (MGP_PahariEiJ_G0031371) #27 Utp20 (MGP_PahariEiJ_G0031372) #29 Arl1 (MGP_PahariEiJ_G0031373) Spic (MGP_PahariEiJ_G0031374) #32 Mybpc1 (MGP_PahariEiJ_G0031375) #33 MGP_PahariEiJ_G0031376 Sycp3 (MGP_PahariEiJ_G0031377) Gnptab (MGP_PahariEiJ_G0031378) Dram1 (MGP_PahariEiJ_G0031379) Washc3 (MGP_PahariEiJ_G0031380) Nup37 (MGP_PahariEiJ_G0031381) Rat MODERN SPECIES 17 Hal (ENSRNOG00000004502) Lta4h (ENSRNOG00000004494) Elk3 (ENSRNOG00000004367) Cdk17 (ENSRNOG00000004148) Cfap54 (ENSRNOG00000024494) Nedd1 (ENSRNOG00000004011) AABR07056611.1 (ENSRNOG00000055726) ENSRNOG00000064198 Tmpo (ENSRNOG00000008797) Ikbip (ENSRNOG00000008247) Apaf1 (ENSRNOG00000008022) Anks1b (ENSRNOG00000024870) Bltp3b (ENSRNOG00000050317) #20 ENSRNOG00000065049 Actr6 (ENSRNOG00000007875) #21 Scyl2 (ENSRNOG00000024955) #22 Slc17a8 (ENSRNOG00000007581) #23 ENSRNOG00000068987 Nr1h4 (ENSRNOG00000007197) #24 Gas2l3 (ENSRNOG00000063755) #25 LOC103692829 (ENSRNOG00000061320) AABR07056556.1 (ENSRNOG00000032424) Ano4 (ENSRNOG00000006841) #26 Slc5a8 (ENSRNOG00000006367) #27 Utp20 (ENSRNOG00000005823) #29 Arl1 (ENSRNOG00000005763) Rps12l4 (ENSRNOG00000043412) #31 Spic (ENSRNOG00000005720) #32 Mybpc1 (ENSRNOG00000056493) #33 Sycp3 (ENSRNOG00000005270) Chpt1 (ENSRNOG00000058271) Cricetidae ANCESTRAL SPECIES 21 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00390000018318.u.b.a.b.a.a.b #31 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 Cricetidae_B ANCESTRAL SPECIES 29 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00390000018318.u.b.a.b.a.a.b #31 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 10 Ccdc38 (ENSMOCG00000000418) Amdhd1 (ENSMOCG00000013736) Hal (ENSMOCG00000020920) Lta4h (ENSMOCG00000007811) Elk3 (ENSMOCG00000012020) Cdk17 (ENSMOCG00000014292) Cfap54 (ENSMOCG00000015195) Nedd1 (ENSMOCG00000016729) Tmpo (ENSMOCG00000003846) Slc25a3 (ENSMOCG00000011110) Ikbip (ENSMOCG00000003674) Apaf1 (ENSMOCG00000015964) Anks1b (ENSMOCG00000008363) Uhrf1bp1l (ENSMOCG00000003118) #20 Actr6 (ENSMOCG00000020691) #21 ENSMOCG00000016884 #22 Slc17a8 (ENSMOCG00000009428) #23 Nr1h4 (ENSMOCG00000006519) #24 Gas2l3 (ENSMOCG00000010014) #25 Ano4 (ENSMOCG00000015645) #26 Slc5a8 (ENSMOCG00000012457) #27 Utp20 (ENSMOCG00000015242) #29 Arl1 (ENSMOCG00000005852) ENSMOCG00000009467 #31 Spic (ENSMOCG00000015321) #32 Mybpc1 (ENSMOCG00000022013) #33 Chpt1 (ENSMOCG00000014213) Sycp3 (ENSMOCG00000018486) ENSMOCG00000016954 Dram1 (ENSMOCG00000021435) Washc3 (ENSMOCG00000018398) Prairie vole MODERN SPECIES 352 Il18rap (ENSMOCG00000000247) Il18r1 (ENSMOCG00000018379) Il1rl1 (ENSMOCG00000013141) Il1rl2 (ENSMOCG00000021017) Il1r1 (ENSMOCG00000012872) Il1r2 (ENSMOCG00000014917) Map4k4 (ENSMOCG00000003196) Rfx8 (ENSMOCG00000020079) Creg2 (ENSMOCG00000005255) ENSMOCG00000004327 ENSMOCG00000022614 Cnot11 (ENSMOCG00000020059) Tbc1d8 (ENSMOCG00000020892) Rpl31 (ENSMOCG00000012618) ENSMOCG00000003508 ENSMOCG00000015837 #22 ENSMOCG00000007220 Nms (ENSMOCG00000008968) Chst10 (ENSMOCG00000016355) Lonrf2 (ENSMOCG00000017896) ENSMOCG00000005572 ENSMOCG00000005082 ENSMOCG00000017401 ENSMOCG00000015713 Txndc9 (ENSMOCG00000009394) Lyg1 (ENSMOCG00000013025) Lyg2 (ENSMOCG00000022777) Mrpl30 (ENSMOCG00000005615) Mitd1 (ENSMOCG00000014690) Lipt1 (ENSMOCG00000013610) Tsga10 (ENSMOCG00000010193) Northern American deer mouse MODERN SPECIES 9 Ccdc38 (ENSPEMG00000021888) Amdhd1 (ENSPEMG00000022642) Hal (ENSPEMG00000022890) Lta4h (ENSPEMG00000024211) Elk3 (ENSPEMG00000015910) Cdk17 (ENSPEMG00000013082) Cfap54 (ENSPEMG00000022516) Nedd1 (ENSPEMG00000022166) Tmpo (ENSPEMG00000013139) Slc25a3 (ENSPEMG00000007546) Ikbip (ENSPEMG00000003189) Apaf1 (ENSPEMG00000013242) Anks1b (ENSPEMG00000021142) Uhrf1bp1l (ENSPEMG00000021207) #20 Actr6 (ENSPEMG00000007827) #21 Scyl2 (ENSPEMG00000015522) #22 ENSPEMG00000025459 Slc17a8 (ENSPEMG00000013525) #23 Nr1h4 (ENSPEMG00000021973) #24 Gas2l3 (ENSPEMG00000023391) #25 Ano4 (ENSPEMG00000009170) #26 Slc5a8 (ENSPEMG00000020559) #27 Utp20 (ENSPEMG00000024120) #29 Arl1 (ENSPEMG00000008781) Spic (ENSPEMG00000020720) #32 Mybpc1 (ENSPEMG00000021020) #33 ENSPEMG00000012990 Sycp3 (ENSPEMG00000021453) Gnptab (ENSPEMG00000020834) Dram1 (ENSPEMG00000021639) Washc3 (ENSPEMG00000022296) Cricetinae ANCESTRAL SPECIES 22 ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00390000018318.u.b.a.b.a.a.b #31 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a.b ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 Chinese hamster chok1gshd DUPLICATION Chinese hamster chok1gshd MODERN SPECIES 83 Lta4h (ENSCGRG00001010777) Elk3 (ENSCGRG00001021882) Cdk17 (ENSCGRG00001016887) ENSCGRG00001019085 ENSCGRG00001014718 Nedd1 (ENSCGRG00001019132) Tmpo (ENSCGRG00001018759) Slc25a3 (ENSCGRG00001015631) Ikbip (ENSCGRG00001015426) Apaf1 (ENSCGRG00001019923) ENSCGRG00001010325 ENSCGRG00001012704 ENSCGRG00001007098 Uhrf1bp1l (ENSCGRG00001015837) #20 Actr6 (ENSCGRG00001019259) #21 ENSCGRG00001005091 #22 Slc17a8 (ENSCGRG00001021681) #23 Nr1h4 (ENSCGRG00001017990) #24 Gas2l3 (ENSCGRG00001015751) #25 Ano4 (ENSCGRG00001022718) #26 Slc5a8 (ENSCGRG00001014482) #27 Utp20 (ENSCGRG00001017151) #29 Arl1 (ENSCGRG00001010446) ENSCGRG00001008037 #31 Spic (ENSCGRG00001005919) #32 Mybpc1 (ENSCGRG00001023486) #33 Chpt1 (ENSCGRG00001011169) Sycp3 (ENSCGRG00001006406) Gnptab (ENSCGRG00001022192) Dram1 (ENSCGRG00001017541) Washc3 (ENSCGRG00001018411) Chinese hamster chok1gshd MODERN SPECIES 83 ENSCGRG00001014628 Glipr1 (ENSCGRG00001017559) Krr1 (ENSCGRG00001005995) ENSCGRG00001005440 Phlda1 (ENSCGRG00001012896) ENSCGRG00001019257 Bbs10 (ENSCGRG00001010466) Osbpl8 (ENSCGRG00001021286) Zdhhc17 (ENSCGRG00001007660) Csrp2 (ENSCGRG00001000844) E2f7 (ENSCGRG00001006568) ENSCGRG00001011762 Nav3 (ENSCGRG00001022037) Brcc3dc (ENSCGRG00001009076) Syt1 (ENSCGRG00001000069) ENSCGRG00001010398 #22 ENSCGRG00001009057 Pawr (ENSCGRG00001011044) Ppp1r12a (ENSCGRG00001017263) Otogl (ENSCGRG00001018530) Ptprq (ENSCGRG00001017128) Myf6 (ENSCGRG00001006341) Myf5 (ENSCGRG00001009370) Lin7a (ENSCGRG00001003313) Acss3 (ENSCGRG00001009906) Ppfia2 (ENSCGRG00001020914) ENSCGRG00001016413 Syn3 (ENSCGRG00001000589) Timp3 (ENSCGRG00001016875) Fbxo7 (ENSCGRG00001019488) Bpifc (ENSCGRG00001023438) Golden Hamster MODERN SPECIES 628 ENSMAUG00000008765 Elk3 (ENSMAUG00000009662) Cdk17 (ENSMAUG00000017263) ENSMAUG00000018845 ENSMAUG00000021431 Nedd1 (ENSMAUG00000013081) ENSMAUG00000015762 Tmpo (ENSMAUG00000014527) Slc25a3 (ENSMAUG00000017601) ENSMAUG00000022277 ENSMAUG00000007841 Anks1b (ENSMAUG00000010615) Uhrf1bp1l (ENSMAUG00000013302) #20 ENSMAUG00000014661 #21 ENSMAUG00000010233 #21 Scyl2 (ENSMAUG00000013849) #22 Slc17a8 (ENSMAUG00000007901) #23 Nr1h4 (ENSMAUG00000011325) #24 Gas2l3 (ENSMAUG00000015984) #25 Ano4 (ENSMAUG00000021383) #26 Slc5a8 (ENSMAUG00000020619) #27 Utp20 (ENSMAUG00000011898) #29 Arl1 (ENSMAUG00000021923) ENSMAUG00000008388 #31 Mybpc1 (ENSMAUG00000008414) #33 Chpt1 (ENSMAUG00000012720) Sycp3 (ENSMAUG00000012167) Gnptab (ENSMAUG00000017361) Dram1 (ENSMAUG00000022048) Washc3 (ENSMAUG00000011959) Nup37 (ENSMAUG00000011627) Upper Galilee mountains blind mole rat MODERN SPECIES 1572 ENSNGAG00000017932 Uhrf1bp1l (ENSNGAG00000016616) #20 Actr6 (ENSNGAG00000014912) #21 ENSNGAG00000014516 #22 ENSNGAG00000014156 Slc17a8 (ENSNGAG00000013808) #23 Lesser Egyptian jerboa MODERN SPECIES 42 Hal (ENSJJAG00000010741) Lta4h (ENSJJAG00000011318) Elk3 (ENSJJAG00000010853) Cdk17 (ENSJJAG00000013291) ENSJJAG00000014966 ENSJJAG00000017399 Nedd1 (ENSJJAG00000010994) Tmpo (ENSJJAG00000018127) Slc25a3 (ENSJJAG00000013339) ENSJJAG00000017372 Apaf1 (ENSJJAG00000014169) ENSJJAG00000023848 ENSJJAG00000018878 Uhrf1bp1l (ENSJJAG00000023679) #20 Actr6 (ENSJJAG00000012412) #21 ENSJJAG00000014007 #22 Slc17a8 (ENSJJAG00000016274) #23 Nr1h4 (ENSJJAG00000017445) #24 ENSJJAG00000017605 #25 Ano4 (ENSJJAG00000021544) #26 Slc5a8 (ENSJJAG00000018761) #27 Utp20 (ENSJJAG00000019321) #29 ENSJJAG00000020719 Mybpc1 (ENSJJAG00000020768) #33 ENSJJAG00000001967 Sycp3 (ENSJJAG00000017653) ENSJJAG00000022706 Dram1 (ENSJJAG00000023953) Washc3 (ENSJJAG00000019930) Nup37 (ENSJJAG00000018864) ENSJJAG00000021125 Kangaroo rat MODERN SPECIES 322 Cdk17 (ENSDORG00000014799) ENSDORG00000025108 ENSDORG00000005572 ENSDORG00000025279 ENSDORG00000026947 Nedd1 (ENSDORG00000001204) ENSDORG00000027259 ENSDORG00000023396 Slc25a3 (ENSDORG00000011431) Ikbip (ENSDORG00000011434) Apaf1 (ENSDORG00000009253) ENSDORG00000009254 ENSDORG00000028031 Uhrf1bp1l (ENSDORG00000024278) #20 Actr6 (ENSDORG00000012723) #21 ENSDORG00000003101 #22 Slc17a8 (ENSDORG00000029543) #23 Nr1h4 (ENSDORG00000001224) #24 ENSDORG00000001225 #25 Ano4 (ENSDORG00000001013) #26 Slc5a8 (ENSDORG00000013252) #27 Utp20 (ENSDORG00000014762) #29 Arl1 (ENSDORG00000014770) Spic (ENSDORG00000003709) #32 Mybpc1 (ENSDORG00000004026) #33 Chpt1 (ENSDORG00000004030) ENSDORG00000004032 Gnptab (ENSDORG00000023503) Dram1 (ENSDORG00000003107) Washc3 (ENSDORG00000029910) Nup37 (ENSDORG00000002780) Rodentia_A ANCESTRAL SPECIES 4 ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000163320 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Hystricomorpha_a ANCESTRAL SPECIES 7 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Hystricomorpha_b ANCESTRAL SPECIES 13 ENSGT00940000153110.B ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118.y.a ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Long-tailed chinchilla MODERN SPECIES 112 HAL (ENSCLAG00000009969) Lta4h (ENSCLAG00000011828) ELK3 (ENSCLAG00000014957) CDK17 (ENSCLAG00000012821) CFAP54 (ENSCLAG00000008151) NEDD1 (ENSCLAG00000013064) ENSCLAG00000007083 TMPO (ENSCLAG00000007244) SLC25A3 (ENSCLAG00000007243) IKBIP (ENSCLAG00000008628) APAF1 (ENSCLAG00000009227) ANKS1B (ENSCLAG00000009661) ENSCLAG00000009179 BLTP3B (ENSCLAG00000012501) #20 ACTR6 (ENSCLAG00000007878) #21 SCYL2 (ENSCLAG00000010496) #22 SLC17A8 (ENSCLAG00000011320) #23 ENSCLAG00000015655 NR1H4 (ENSCLAG00000012775) #24 GAS2L3 (ENSCLAG00000007654) #25 ANO4 (ENSCLAG00000014090) #26 SLC5A8 (ENSCLAG00000009574) #27 UTP20 (ENSCLAG00000011569) #29 ARL1 (ENSCLAG00000008180) SPIC (ENSCLAG00000016048) #32 MYBPC1 (ENSCLAG00000006936) #33 ENSCLAG00000012024 SYCP3 (ENSCLAG00000006962) GNPTAB (ENSCLAG00000007404) DRAM1 (ENSCLAG00000008068) WASHC3 (ENSCLAG00000008749) Degu MODERN SPECIES 45 ENSODEG00000010263 ENSODEG00000019742 ENSODEG00000019648 ENSODEG00000013377 SLC25A3 (ENSODEG00000009995) ENSODEG00000010948 APAF1 (ENSODEG00000010122) ENSODEG00000019813 ENSODEG00000010313 ENSODEG00000010573 ENSODEG00000010991 ENSODEG00000010669 ENSODEG00000011572 BLTP3B (ENSODEG00000010196) #20 ENSODEG00000010649 #21 ENSODEG00000011114 #22 SLC17A8 (ENSODEG00000010869) #23 NR1H4 (ENSODEG00000012027) #24 ENSODEG00000010407 #25 ENSODEG00000009780 ANO4 (ENSODEG00000011009) #26 ENSODEG00000010202 SLC5A8 (ENSODEG00000010696) #27 UTP20 (ENSODEG00000013411) #29 ENSODEG00000010531 SPIC (ENSODEG00000010078) #32 ENSODEG00000010424 MYBPC1 (ENSODEG00000012077) #33 CHPT1 (ENSODEG00000011230) SYCP3 (ENSODEG00000011961) GNPTAB (ENSODEG00000012289) Guinea pig MODERN SPECIES 9 AMDHD1 (ENSCPOG00000001031) HAL (ENSCPOG00000013043) LTA4H (ENSCPOG00000013048) ELK3 (ENSCPOG00000005065) CDK17 (ENSCPOG00000005070) CFAP54 (ENSCPOG00000009624) NEDD1 (ENSCPOG00000009631) ENSCPOG00000004978 TMPO (ENSCPOG00000011604) SLC25A3 (ENSCPOG00000011606) IKBIP (ENSCPOG00000040634) APAF1 (ENSCPOG00000015196) ANKS1B (ENSCPOG00000015197) BLTP3B (ENSCPOG00000009379) #20 ACTR6 (ENSCPOG00000024022) #21 SCYL2 (ENSCPOG00000015459) #22 SLC17A8 (ENSCPOG00000009083) #23 NR1H4 (ENSCPOG00000002168) #24 GAS2L3 (ENSCPOG00000036868) #25 ANO4 (ENSCPOG00000008963) #26 SLC5A8 (ENSCPOG00000010055) #27 UTP20 (ENSCPOG00000003129) #29 ARL1 (ENSCPOG00000026014) SPIC (ENSCPOG00000007301) #32 MYBPC1 (ENSCPOG00000011180) #33 CHPT1 (ENSCPOG00000001199) SYCP3 (ENSCPOG00000001202) GNPTAB (ENSCPOG00000022501) ENSCPOG00000034099 WASHC3 (ENSCPOG00000036997) NUP37 (ENSCPOG00000011895) Naked mole-rat female MODERN SPECIES 8 ENSHGLG00000006066 CFAP54 (ENSHGLG00000004618) ENSHGLG00000011260 NEDD1 (ENSHGLG00000012733) ENSHGLG00000037736 ENSHGLG00000032527 ENSHGLG00000010848 ENSHGLG00000008601 IKBIP (ENSHGLG00000047603) ENSHGLG00000049820 APAF1 (ENSHGLG00000007198) ENSHGLG00000016527 ENSHGLG00000041800 BLTP3B (ENSHGLG00000008977) #20 ACTR6 (ENSHGLG00000006255) #21 SCYL2 (ENSHGLG00000004458) #22 SLC17A8 (ENSHGLG00000004252) #23 NR1H4 (ENSHGLG00000038152) #24 ENSHGLG00000006370 ENSHGLG00000039506 ANO4 (ENSHGLG00000010936) #26 SLC5A8 (ENSHGLG00000008465) #27 ENSHGLG00000046315 ENSHGLG00000044877 SPIC (ENSHGLG00000039584) #32 ENSHGLG00000050337 #33 ENSHGLG00000039302 ENSHGLG00000005709 SYCP3 (ENSHGLG00000004845) ENSHGLG00000034643 DRAM1 (ENSHGLG00000009546) Sciuridae ANCESTRAL SPECIES 14 ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000163320 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 14 ENSSVLG00005005745 ENSSVLG00005005778 ENSSVLG00005005829 NEDD1 (ENSSVLG00005005868) ENSSVLG00005006011 ENSSVLG00005006115 IKBIP (ENSSVLG00005006279) APAF1 (ENSSVLG00005006518) ENSSVLG00005007229 ANKS1B (ENSSVLG00005007585) GARIN6 (ENSSVLG00005008609) ENSSVLG00005008635 ENSSVLG00005008665 BLTP3B (ENSSVLG00005008712) #20 ACTR6 (ENSSVLG00005008778) #21 ENSSVLG00005008897 #22 SLC17A8 (ENSSVLG00005009180) #23 NR1H4 (ENSSVLG00005009339) #24 GAS2L3 (ENSSVLG00005009544) #25 ANO4 (ENSSVLG00005009692) #26 SLC5A8 (ENSSVLG00005010200) #27 ENSSVLG00005010295 UTP20 (ENSSVLG00005010358) #29 ARL1 (ENSSVLG00005007015) ENSSVLG00005007121 #32 MYBPC1 (ENSSVLG00005007401) #33 CHPT1 (ENSSVLG00005008570) SYCP3 (ENSSVLG00005008597) GNPTAB (ENSSVLG00005008675) DRAM1 (ENSSVLG00005008749) WASHC3 (ENSSVLG00005008789) Eurasian red squirrel MODERN SPECIES IFFO2 (ENSSVLG00005001755) UBR4 (ENSSVLG00005001808) EMC1 (ENSSVLG00005001895) ENSSVLG00005001942 ENSSVLG00005001971 ENSSVLG00005001993 ENSSVLG00005002008 SLC66A1 (ENSSVLG00005002036) CAPZB (ENSSVLG00005002066) ENSSVLG00005002124 ENSSVLG00005002145 NBL1 (ENSSVLG00005002155) HTR6 (ENSSVLG00005002183) TMCO4 (ENSSVLG00005002227) RNF186 (ENSSVLG00005002260) ENSSVLG00005002272 #22 ENSSVLG00005002288 OTUD3 (ENSSVLG00005002298) PLA2G2E (ENSSVLG00005002318) ENSSVLG00005002333 PLA2G2A (ENSSVLG00005002419) PLA2G5 (ENSSVLG00005002531) PLA2G2D (ENSSVLG00005002551) PLA2G2F (ENSSVLG00005002583) PLA2G2C (ENSSVLG00005002602) UBXN10 (ENSSVLG00005002615) VWA5B1 (ENSSVLG00005002638) CAMK2N1 (ENSSVLG00005002728) MUL1 (ENSSVLG00005002743) FAM43B (ENSSVLG00005002758) ENSSVLG00005002772 Marmotini ANCESTRAL SPECIES 4 ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000164546 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000163320 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a.e #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Marmotini_b ANCESTRAL SPECIES 3 ENSGT00390000008645 ENSGT00390000009047.b ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000163320 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000155118 ENSGT00940000155067.a.e #32 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 Squirrel MODERN SPECIES 92 TMPO (ENSSTOG00000009169) SLC25A3 (ENSSTOG00000027633) IKBIP (ENSSTOG00000026100) APAF1 (ENSSTOG00000028539) ANKS1B (ENSSTOG00000012238) BLTP3B (ENSSTOG00000004850) #20 ACTR6 (ENSSTOG00000004895) #21 SCYL2 (ENSSTOG00000011753) #22 SLC17A8 (ENSSTOG00000011763) #23 NR1H4 (ENSSTOG00000011771) #24 GAS2L3 (ENSSTOG00000011780) #25 ANO4 (ENSSTOG00000016283) #26 SLC5A8 (ENSSTOG00000016289) #27 UTP20 (ENSSTOG00000015995) #29 ARL1 (ENSSTOG00000016022) ENSSTOG00000015457 #32 MYBPC1 (ENSSTOG00000003034) #33 CHPT1 (ENSSTOG00000011736) SYCP3 (ENSSTOG00000001853) GNPTAB (ENSSTOG00000001855) DRAM1 (ENSSTOG00000001865) WASHC3 (ENSSTOG00000029775) NUP37 (ENSSTOG00000001874) Arctic ground squirrel MODERN SPECIES 6 HAL (ENSUPAG00010006474) LTA4H (ENSUPAG00010006436) ELK3 (ENSUPAG00010006425) ENSUPAG00010006422 CDK17 (ENSUPAG00010006388) CFAP54 (ENSUPAG00010006280) NEDD1 (ENSUPAG00010006247) ENSUPAG00010006109 SLC25A3 (ENSUPAG00010006073) IKBIP (ENSUPAG00010006055) APAF1 (ENSUPAG00010006002) GARIN6 (ENSUPAG00010005992) ANKS1B (ENSUPAG00010003556) BLTP3B (ENSUPAG00010003512) #20 ACTR6 (ENSUPAG00010003498) #21 SCYL2 (ENSUPAG00010003458) #22 SLC17A8 (ENSUPAG00010003443) #23 NR1H4 (ENSUPAG00010003387) #24 GAS2L3 (ENSUPAG00010003356) #25 ENSUPAG00010003346 ANO4 (ENSUPAG00010003185) #26 SLC5A8 (ENSUPAG00010003154) #27 UTP20 (ENSUPAG00010003081) #29 ARL1 (ENSUPAG00010003075) MYBPC1 (ENSUPAG00010002997) #33 CHPT1 (ENSUPAG00010002983) SYCP3 (ENSUPAG00010002966) GNPTAB (ENSUPAG00010002938) DRAM1 (ENSUPAG00010002927) WASHC3 (ENSUPAG00010002918) NUP37 (ENSUPAG00010002890) Alpin marmot MODERN SPECIES 11 LTA4H (ENSMMMG00000020008) ELK3 (ENSMMMG00000020001) CDK17 (ENSMMMG00000019989) ENSMMMG00000019968 ENSMMMG00000019958 NEDD1 (ENSMMMG00000019953) ENSMMMG00000019863 SLC25A3 (ENSMMMG00000019846) IKBIP (ENSMMMG00000019840) APAF1 (ENSMMMG00000019774) ENSMMMG00000019768 GARIN6 (ENSMMMG00000019762) ANKS1B (ENSMMMG00000018366) BLTP3B (ENSMMMG00000018268) #20 ACTR6 (ENSMMMG00000018236) #21 SCYL2 (ENSMMMG00000018205) #22 SLC17A8 (ENSMMMG00000018190) #23 NR1H4 (ENSMMMG00000018110) #24 GAS2L3 (ENSMMMG00000018095) #25 ANO4 (ENSMMMG00000017942) #26 SLC5A8 (ENSMMMG00000017894) #27 UTP20 (ENSMMMG00000017841) #29 ARL1 (ENSMMMG00000017821) SPIC (ENSMMMG00000017812) #32 MYBPC1 (ENSMMMG00000017763) #33 CHPT1 (ENSMMMG00000017731) SYCP3 (ENSMMMG00000017715) GNPTAB (ENSMMMG00000017694) DRAM1 (ENSMMMG00000017688) WASHC3 (ENSMMMG00000017678) NUP37 (ENSMMMG00000017664) Lagomorpha ANCESTRAL SPECIES 22 ENSGT00940000156375 ENSGT00940000157129 ENSGT00940000155834 ENSGT00940000162970 ENSGT00940000162446 ENSGT00390000001561 ENSGT00940000154098.a.d ENSGT00390000008708 ENSGT00500000045001 ENSGT00940000157710 ENSGT00940000154572.`c ENSGT00940000162770 ENSGT00600000084428.b #20 ENSGT00720000108833 #21 ENSGT00950000182976.a.a ENSGT00880000138031 #22 ENSGT00940000158187 #23 ENSGT00940000158037 #24 ENSGT00940000159389 #25 ENSGT00940000158600 #26 ENSGT00940000155166.A #27 ENSGT00390000016813 #29 ENSGT00940000158254 #33 ENSGT00950000183117.a.a ENSGT00390000000062.x.a ENSGT00390000006747 ENSGT01030000234578.B.a ENSGT00390000014084 ENSGT00390000010777 ENSGT00390000006088 ENSGT00390000004984 Rabbit MODERN SPECIES 15 LTA4H (ENSOCUG00000005535) ELK3 (ENSOCUG00000034370) CDK17 (ENSOCUG00000013583) CFAP54 (ENSOCUG00000013917) NEDD1 (ENSOCUG00000010944) ENSOCUG00000012692 SLC25A3 (ENSOCUG00000011847) IKBIP (ENSOCUG00000011854) APAF1 (ENSOCUG00000011860) ANKS1B (ENSOCUG00000029510) ENSOCUG00000011887 ENSOCUG00000032944 #20 ENSOCUG00000017132 #20 ACTR6 (ENSOCUG00000000141) #21 ENSOCUG00000024669 SCYL2 (ENSOCUG00000009146) #22 SLC17A8 (ENSOCUG00000015995) #23 NR1H4 (ENSOCUG00000007177) #24 GAS2L3 (ENSOCUG00000007182) #25 ENSOCUG00000033171 ANO4 (ENSOCUG00000000881) #26 ENSOCUG00000036878 SLC5A8 (ENSOCUG00000003486) #27 ENSOCUG00000037051 UTP20 (ENSOCUG00000010475) #29 ARL1 (ENSOCUG00000002217) ENSOCUG00000029302 ENSOCUG00000030138 ENSOCUG00000008070 #32 ENSOCUG00000033531 MYBPC1 (ENSOCUG00000009276) #33 Pika MODERN SPECIES 1374 ENSOPRG00000007982 #22 ENSOPRG00000008010 #23 Tree shrew MODERN SPECIES 5062 ENSTBEG00000016345 #22 SLC17A8 (ENSTBEG00000016510) #23 NR1H4 (ENSTBEG00000016715) #24 GAS2L3 (ENSTBEG00000016732) #25