Murinae	ANCESTRAL SPECIES	22	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #23	ENSGT00940000158037 #24	ENSGT00940000159389 #25	ENSGT00940000158600 #26	ENSGT00940000155166.A #27	ENSGT00390000016813 #28	ENSGT00940000155118 #29	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000155067.a #30	ENSGT00940000158254 #31	ENSGT00950000183117.a.a #32	ENSGT00390000000062.x.a.b #33	ENSGT00390000006747 #34	ENSGT01030000234578.B.a #35	ENSGT00390000014084 #36
Mus	ANCESTRAL SPECIES	23	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #23	ENSGT00940000158037 #24	ENSGT00940000159389 #25	ENSGT00940000158600 #26	ENSGT00940000155166.A #27	ENSGT00390000016813 #28	ENSGT00940000155118 #29	ENSGT00940000155067.a #30	ENSGT00940000158254 #31	ENSGT00950000183117.a.a #32	ENSGT00390000000062.x.a.b #33	ENSGT00390000006747 #34	ENSGT01030000234578.B.a #35	ENSGT00390000014084 #36	ENSGT00390000010777 #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #23	ENSGT00940000158037 #24	ENSGT00940000159389 #25	ENSGT00940000158600 #26	ENSGT00940000155166.A #27	ENSGT00390000016813 #28	ENSGT00940000155118 #29	ENSGT00940000155067.a #30	ENSGT00940000158254 #31	ENSGT00950000183117.a.a #32	ENSGT00390000000062.x.a.b #33	ENSGT00390000006747 #34	ENSGT01030000234578.B.a #35	ENSGT00390000014084 #36	ENSGT00390000010777 #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #23	ENSGT00940000158037 #24	ENSGT00940000159389 #25	ENSGT00940000158600 #26	ENSGT00940000155166.A #27	ENSGT00390000016813 #28	ENSGT00940000155118 #29	ENSGT00940000155067.a #30	ENSGT00940000158254 #31	ENSGT00950000183117.a.a #32	ENSGT00390000000062.x.a.b #33	ENSGT00390000006747 #34	ENSGT01030000234578.B.a #35	ENSGT00390000014084 #36	ENSGT00390000010777 #37
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #23	ENSGT00940000158037 #24	ENSGT00940000159389 #25	ENSGT00940000158600 #26	ENSGT00940000155166.A #27	ENSGT00390000016813 #28	ENSGT00940000155118 #29	ENSGT00940000155067.a #30	ENSGT00940000158254 #31	ENSGT00950000183117.a.a #32	ENSGT00390000000062.x.a.b #33	ENSGT00390000006747 #34	ENSGT01030000234578.B.a #35	ENSGT00390000014084 #36	ENSGT00390000010777 #37
spretus	MODERN SPECIES	1	Ccdc38 (MGP_SPRETEiJ_G0016552) #7	Amdhd1 (MGP_SPRETEiJ_G0016551) #8	Hal (MGP_SPRETEiJ_G0016550) #9	Lta4h (MGP_SPRETEiJ_G0016549) #10	Elk3 (MGP_SPRETEiJ_G0016548) #11	Cdk17 (MGP_SPRETEiJ_G0016547) #12	Cfap54 (MGP_SPRETEiJ_G0016546) #13	Nedd1 (MGP_SPRETEiJ_G0016545) #14	Tmpo (MGP_SPRETEiJ_G0016544) #15	Slc25a3 (MGP_SPRETEiJ_G0016543) #16	Ikbip (MGP_SPRETEiJ_G0016542) #17	Apaf1 (MGP_SPRETEiJ_G0016541) #18	Anks1b (MGP_SPRETEiJ_G0016540) #19	Uhrf1bp1l (MGP_SPRETEiJ_G0016539) #20	Actr6 (MGP_SPRETEiJ_G0016538) #21	Scyl2 (MGP_SPRETEiJ_G0016537) #22	Slc17a8 (MGP_SPRETEiJ_G0016536) #23	Nr1h4 (MGP_SPRETEiJ_G0016535) #24	Gas2l3 (MGP_SPRETEiJ_G0016534) #25	Ano4 (MGP_SPRETEiJ_G0016533) #26	Slc5a8 (MGP_SPRETEiJ_G0016532) #27	Utp20 (MGP_SPRETEiJ_G0016531) #28	Arl1 (MGP_SPRETEiJ_G0016530) #29	Spic (MGP_SPRETEiJ_G0016529) #30	Mybpc1 (MGP_SPRETEiJ_G0016528) #31	MGP_SPRETEiJ_G0016527 #32	Sycp3 (MGP_SPRETEiJ_G0016526) #33	Gnptab (MGP_SPRETEiJ_G0016525) #34	Dram1 (MGP_SPRETEiJ_G0016524) #35	Washc3 (MGP_SPRETEiJ_G0016523) #36	Nup37 (MGP_SPRETEiJ_G0016522) #37
Steppe mouse	MODERN SPECIES	2939														Uhrf1bp1l (ENSMSIG00000017125) #20	Actr6 (ENSMSIG00000017172) #21	Scyl2 (ENSMSIG00000017210) #22	Slc17a8 (ENSMSIG00000017267) #23	Nr1h4 (ENSMSIG00000017294) #24	Gas2l3 (ENSMSIG00000017395) #25	Ano4 (ENSMSIG00000017553) #26	Slc5a8 (ENSMSIG00000017818) #27	ENSMSIG00000017854	Utp20 (ENSMSIG00000017862) #28	ENSMSIG00000017985	ENSMSIG00000017992	Spic (ENSMSIG00000018013) #30	Mybpc1 (ENSMSIG00000018042) #31
Mouse	MODERN SPECIES	1	Ccdc38 (ENSMUSG00000036168) #7	Amdhd1 (ENSMUSG00000015890) #8	Hal (ENSMUSG00000020017) #9	Lta4h (ENSMUSG00000015889) #10	Elk3 (ENSMUSG00000008398) #11	Cdk17 (ENSMUSG00000020015) #12	Cfap54 (ENSMUSG00000020014) #13	Nedd1 (ENSMUSG00000019988) #14	Tmpo (ENSMUSG00000019961) #15	Slc25a3 (ENSMUSG00000061904) #16	Ikbip (ENSMUSG00000019975) #17	Apaf1 (ENSMUSG00000019979) #18	Anks1b (ENSMUSG00000058589) #19	Uhrf1bp1l (ENSMUSG00000019951) #20	Actr6 (ENSMUSG00000019948) #21	Scyl2 (ENSMUSG00000069539) #22	Slc17a8 (ENSMUSG00000019935) #23	Nr1h4 (ENSMUSG00000047638) #24	Gas2l3 (ENSMUSG00000074802) #25	Ano4 (ENSMUSG00000035189) #26	Slc5a8 (ENSMUSG00000020062) #27	Utp20 (ENSMUSG00000004356) #28	Arl1 (ENSMUSG00000060904) #29	Spic (ENSMUSG00000004359) #30	Mybpc1 (ENSMUSG00000020061) #31	Sycp3 (ENSMUSG00000020059) #33	Chpt1 (ENSMUSG00000060002) #32	Gnptab (ENSMUSG00000035311) #34	Dram1 (ENSMUSG00000020057) #35	Washc3 (ENSMUSG00000020056) #36	Nup37 (ENSMUSG00000035351) #37
Ryukyu mouse	MODERN SPECIES	1	Ccdc38 (MGP_CAROLIEiJ_G0015734) #7	Amdhd1 (MGP_CAROLIEiJ_G0015733) #8	Hal (MGP_CAROLIEiJ_G0015732) #9	Lta4h (MGP_CAROLIEiJ_G0015731) #10	Elk3 (MGP_CAROLIEiJ_G0015730) #11	Cdk17 (MGP_CAROLIEiJ_G0015729) #12	Cfap54 (MGP_CAROLIEiJ_G0015728) #13	Nedd1 (MGP_CAROLIEiJ_G0015727) #14	MGP_CAROLIEiJ_G0015726 ##15	Slc25a3 (MGP_CAROLIEiJ_G0015725) #16	Ikbip (MGP_CAROLIEiJ_G0015724) #17	Apaf1 (MGP_CAROLIEiJ_G0015723) #18	Anks1b (MGP_CAROLIEiJ_G0015722) #19	Uhrf1bp1l (MGP_CAROLIEiJ_G0015721) #20	Actr6 (MGP_CAROLIEiJ_G0015720) #21	Scyl2 (MGP_CAROLIEiJ_G0015719) #22	Slc17a8 (MGP_CAROLIEiJ_G0015718) #23	Nr1h4 (MGP_CAROLIEiJ_G0015717) #24	Gas2l3 (MGP_CAROLIEiJ_G0015716) #25	Ano4 (MGP_CAROLIEiJ_G0015715) #26	Slc5a8 (MGP_CAROLIEiJ_G0015714) #27	Utp20 (MGP_CAROLIEiJ_G0015713) #28	Arl1 (MGP_CAROLIEiJ_G0015712) #29	MGP_CAROLIEiJ_G0015711 #30	Mybpc1 (MGP_CAROLIEiJ_G0015710) #31	Sycp3 (MGP_CAROLIEiJ_G0015709) #33	Chpt1 (MGP_CAROLIEiJ_G0015708) #32	Gnptab (MGP_CAROLIEiJ_G0015707) #34	Dram1 (MGP_CAROLIEiJ_G0015706) #35	Washc3 (MGP_CAROLIEiJ_G0015705) #36	Nup37 (MGP_CAROLIEiJ_G0015704) #37
Shrew mouse	MODERN SPECIES	22	Ccdc38 (MGP_PahariEiJ_G0031351) #7	MGP_PahariEiJ_G0031352 #8	Hal (MGP_PahariEiJ_G0031353) #9	Lta4h (MGP_PahariEiJ_G0031354) #10	Elk3 (MGP_PahariEiJ_G0031355) #11	Cdk17 (MGP_PahariEiJ_G0031356) #12	Cfap54 (MGP_PahariEiJ_G0031357) #13	Nedd1 (MGP_PahariEiJ_G0031358) #14	Tmpo (MGP_PahariEiJ_G0031359) #15	Slc25a3 (MGP_PahariEiJ_G0031360) #16	Ikbip (MGP_PahariEiJ_G0031361) #17	Apaf1 (MGP_PahariEiJ_G0031362) #18	Anks1b (MGP_PahariEiJ_G0031363) #19	Uhrf1bp1l (MGP_PahariEiJ_G0031364) #20	Actr6 (MGP_PahariEiJ_G0031365) #21	Scyl2 (MGP_PahariEiJ_G0031366) #22	Slc17a8 (MGP_PahariEiJ_G0031367) #23	Nr1h4 (MGP_PahariEiJ_G0031368) #24	Gas2l3 (MGP_PahariEiJ_G0031369) #25	Ano4 (MGP_PahariEiJ_G0031370) #26	Slc5a8 (MGP_PahariEiJ_G0031371) #27	Utp20 (MGP_PahariEiJ_G0031372) #28	Arl1 (MGP_PahariEiJ_G0031373) #29	Spic (MGP_PahariEiJ_G0031374) #30	Mybpc1 (MGP_PahariEiJ_G0031375) #31	MGP_PahariEiJ_G0031376 #32	Sycp3 (MGP_PahariEiJ_G0031377) #33	Gnptab (MGP_PahariEiJ_G0031378) #34	Dram1 (MGP_PahariEiJ_G0031379) #35	Washc3 (MGP_PahariEiJ_G0031380) #36	Nup37 (MGP_PahariEiJ_G0031381) #37
Rat	MODERN SPECIES	17	Hal (ENSRNOG00000004502) #9	Lta4h (ENSRNOG00000004494) #10	Elk3 (ENSRNOG00000004367) #11	Cdk17 (ENSRNOG00000004148) #12	Cfap54 (ENSRNOG00000024494) #13	Nedd1 (ENSRNOG00000004011) #14	AABR07056611.1 (ENSRNOG00000055726)	ENSRNOG00000064198	Tmpo (ENSRNOG00000008797) #16	Ikbip (ENSRNOG00000008247) #17	Apaf1 (ENSRNOG00000008022) #18	Anks1b (ENSRNOG00000024870) #19	Bltp3b (ENSRNOG00000050317) #20	ENSRNOG00000065049	Actr6 (ENSRNOG00000007875) #21	Scyl2 (ENSRNOG00000024955) #22	Slc17a8 (ENSRNOG00000007581) #23	ENSRNOG00000068987	Nr1h4 (ENSRNOG00000007197) #24	Gas2l3 (ENSRNOG00000063755) #25	LOC103692829 (ENSRNOG00000061320)	AABR07056556.1 (ENSRNOG00000032424)	Ano4 (ENSRNOG00000006841) #26	Slc5a8 (ENSRNOG00000006367) #27	Utp20 (ENSRNOG00000005823) #28	Arl1 (ENSRNOG00000005763) #29	Rps12l4 (ENSRNOG00000043412)	Spic (ENSRNOG00000005720) #30	Mybpc1 (ENSRNOG00000056493) #31	Sycp3 (ENSRNOG00000005270) #33	Chpt1 (ENSRNOG00000058271) #32