Glires	ANCESTRAL SPECIES	4	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00940000163320	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00950000182976.a.a	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00900000143486	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00940000163320	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Muroidea	ANCESTRAL SPECIES	5	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37
Cricetidae_B	ANCESTRAL SPECIES	29	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37
Northern American deer mouse	MODERN SPECIES	9	Ccdc38 (ENSPEMG00000021888) #7	Amdhd1 (ENSPEMG00000022642) #8	Hal (ENSPEMG00000022890) #9	Lta4h (ENSPEMG00000024211) #10	Elk3 (ENSPEMG00000015910) #11	Cdk17 (ENSPEMG00000013082) #12	Cfap54 (ENSPEMG00000022516) #13	Nedd1 (ENSPEMG00000022166) #14	Tmpo (ENSPEMG00000013139) #15	Slc25a3 (ENSPEMG00000007546) #16	Ikbip (ENSPEMG00000003189) #17	Apaf1 (ENSPEMG00000013242) #18	Anks1b (ENSPEMG00000021142) #19	Uhrf1bp1l (ENSPEMG00000021207) #20	Actr6 (ENSPEMG00000007827) #21	Scyl2 (ENSPEMG00000015522) #22	ENSPEMG00000025459 #23	Slc17a8 (ENSPEMG00000013525) #24	Nr1h4 (ENSPEMG00000021973) #25	Gas2l3 (ENSPEMG00000023391) #26	Ano4 (ENSPEMG00000009170) #27	Slc5a8 (ENSPEMG00000020559) #28	Utp20 (ENSPEMG00000024120) #29	Arl1 (ENSPEMG00000008781) #30	Spic (ENSPEMG00000020720) #31	Mybpc1 (ENSPEMG00000021020) #32	ENSPEMG00000012990 #33	Sycp3 (ENSPEMG00000021453) #34	Gnptab (ENSPEMG00000020834) #35	Dram1 (ENSPEMG00000021639) #36	Washc3 (ENSPEMG00000022296) #37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	10	Ccdc38 (ENSMOCG00000000418) #7	Amdhd1 (ENSMOCG00000013736) #8	Hal (ENSMOCG00000020920) #9	Lta4h (ENSMOCG00000007811) #10	Elk3 (ENSMOCG00000012020) #11	Cdk17 (ENSMOCG00000014292) #12	Cfap54 (ENSMOCG00000015195) #13	Nedd1 (ENSMOCG00000016729) #14	Tmpo (ENSMOCG00000003846) #15	Slc25a3 (ENSMOCG00000011110) #16	Ikbip (ENSMOCG00000003674) #17	Apaf1 (ENSMOCG00000015964) #18	Anks1b (ENSMOCG00000008363) #19	Uhrf1bp1l (ENSMOCG00000003118) #20	Actr6 (ENSMOCG00000020691) #21	ENSMOCG00000016884 #22	Slc17a8 (ENSMOCG00000009428) #24	Nr1h4 (ENSMOCG00000006519) #25	Gas2l3 (ENSMOCG00000010014) #26	Ano4 (ENSMOCG00000015645) #27	Slc5a8 (ENSMOCG00000012457) #28	Utp20 (ENSMOCG00000015242) #29	Arl1 (ENSMOCG00000005852) #30	ENSMOCG00000009467	Spic (ENSMOCG00000015321) #31	Mybpc1 (ENSMOCG00000022013) #32	Chpt1 (ENSMOCG00000014213) #33	Sycp3 (ENSMOCG00000018486) #34	ENSMOCG00000016954 #35	Dram1 (ENSMOCG00000021435) #36	Washc3 (ENSMOCG00000018398) #37
Prairie vole	MODERN SPECIES	352	Il18rap (ENSMOCG00000000247)	Il18r1 (ENSMOCG00000018379)	Il1rl1 (ENSMOCG00000013141)	Il1rl2 (ENSMOCG00000021017)	Il1r1 (ENSMOCG00000012872)	Il1r2 (ENSMOCG00000014917)	Map4k4 (ENSMOCG00000003196)	Rfx8 (ENSMOCG00000020079)	Creg2 (ENSMOCG00000005255)	ENSMOCG00000004327	ENSMOCG00000022614	Cnot11 (ENSMOCG00000020059)	Tbc1d8 (ENSMOCG00000020892)	Rpl31 (ENSMOCG00000012618)	ENSMOCG00000003508	ENSMOCG00000015837 #22	ENSMOCG00000007220	Nms (ENSMOCG00000008968)	Chst10 (ENSMOCG00000016355)	Lonrf2 (ENSMOCG00000017896)	ENSMOCG00000005572	ENSMOCG00000005082	ENSMOCG00000017401	ENSMOCG00000015713	Txndc9 (ENSMOCG00000009394)	Lyg1 (ENSMOCG00000013025)	Lyg2 (ENSMOCG00000022777)	Mrpl30 (ENSMOCG00000005615)	Mitd1 (ENSMOCG00000014690)	Lipt1 (ENSMOCG00000013610)	Tsga10 (ENSMOCG00000010193)
Cricetinae	ANCESTRAL SPECIES	22	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	83	Lta4h (ENSCGRG00001010777) #10	Elk3 (ENSCGRG00001021882) #11	Cdk17 (ENSCGRG00001016887) #12	ENSCGRG00001019085	ENSCGRG00001014718	Nedd1 (ENSCGRG00001019132) #14	Tmpo (ENSCGRG00001018759) #15	Slc25a3 (ENSCGRG00001015631) #16	Ikbip (ENSCGRG00001015426) #17	Apaf1 (ENSCGRG00001019923) #18	ENSCGRG00001010325 #19	ENSCGRG00001012704 #19	ENSCGRG00001007098	Uhrf1bp1l (ENSCGRG00001015837) #20	Actr6 (ENSCGRG00001019259) #21	ENSCGRG00001005091 #22	Slc17a8 (ENSCGRG00001021681) #24	Nr1h4 (ENSCGRG00001017990) #25	Gas2l3 (ENSCGRG00001015751) #26	Ano4 (ENSCGRG00001022718) #27	Slc5a8 (ENSCGRG00001014482) #28	Utp20 (ENSCGRG00001017151) #29	Arl1 (ENSCGRG00001010446) #30	ENSCGRG00001008037	Spic (ENSCGRG00001005919) #31	Mybpc1 (ENSCGRG00001023486) #32	Chpt1 (ENSCGRG00001011169) #33	Sycp3 (ENSCGRG00001006406) #34	Gnptab (ENSCGRG00001022192) #35	Dram1 (ENSCGRG00001017541) #36	Washc3 (ENSCGRG00001018411) #37
Chinese hamster chok1gshd	MODERN SPECIES	83	ENSCGRG00001014628	Glipr1 (ENSCGRG00001017559)	Krr1 (ENSCGRG00001005995)	ENSCGRG00001005440	Phlda1 (ENSCGRG00001012896)	ENSCGRG00001019257	Bbs10 (ENSCGRG00001010466)	Osbpl8 (ENSCGRG00001021286)	Zdhhc17 (ENSCGRG00001007660)	Csrp2 (ENSCGRG00001000844)	E2f7 (ENSCGRG00001006568)	ENSCGRG00001011762	Nav3 (ENSCGRG00001022037)	Brcc3dc (ENSCGRG00001009076)	Syt1 (ENSCGRG00001000069)	ENSCGRG00001010398 #22	ENSCGRG00001009057	Pawr (ENSCGRG00001011044)	Ppp1r12a (ENSCGRG00001017263)	Otogl (ENSCGRG00001018530)	Ptprq (ENSCGRG00001017128)	Myf6 (ENSCGRG00001006341)	Myf5 (ENSCGRG00001009370)	Lin7a (ENSCGRG00001003313)	Acss3 (ENSCGRG00001009906)	Ppfia2 (ENSCGRG00001020914)	ENSCGRG00001016413	Syn3 (ENSCGRG00001000589)	Timp3 (ENSCGRG00001016875)	Fbxo7 (ENSCGRG00001019488)	Bpifc (ENSCGRG00001023438)
Golden Hamster	MODERN SPECIES	628	ENSMAUG00000008765	Elk3 (ENSMAUG00000009662) #11	Cdk17 (ENSMAUG00000017263) #12	ENSMAUG00000018845	ENSMAUG00000021431	Nedd1 (ENSMAUG00000013081) #14	ENSMAUG00000015762	Tmpo (ENSMAUG00000014527) #15	Slc25a3 (ENSMAUG00000017601) #16	ENSMAUG00000022277 #17	ENSMAUG00000007841 #18	Anks1b (ENSMAUG00000010615) #19	Uhrf1bp1l (ENSMAUG00000013302) #20	ENSMAUG00000014661 #21	ENSMAUG00000010233 #21	Scyl2 (ENSMAUG00000013849) #22	Slc17a8 (ENSMAUG00000007901) #24	Nr1h4 (ENSMAUG00000011325) #25	Gas2l3 (ENSMAUG00000015984) #26	Ano4 (ENSMAUG00000021383) #27	Slc5a8 (ENSMAUG00000020619) #28	Utp20 (ENSMAUG00000011898) #29	Arl1 (ENSMAUG00000021923) #30	ENSMAUG00000008388	Mybpc1 (ENSMAUG00000008414) #32	Chpt1 (ENSMAUG00000012720) #33	Sycp3 (ENSMAUG00000012167) #34	Gnptab (ENSMAUG00000017361) #35	Dram1 (ENSMAUG00000022048) #36	Washc3 (ENSMAUG00000011959) #37	Nup37 (ENSMAUG00000011627)
Murinae	ANCESTRAL SPECIES	22	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00390000018318.u.b.a.b.a.a.b	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37
Mus	ANCESTRAL SPECIES	23	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a.b #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
spretus	MODERN SPECIES	1	Ccdc38 (MGP_SPRETEiJ_G0016552) #7	Amdhd1 (MGP_SPRETEiJ_G0016551) #8	Hal (MGP_SPRETEiJ_G0016550) #9	Lta4h (MGP_SPRETEiJ_G0016549) #10	Elk3 (MGP_SPRETEiJ_G0016548) #11	Cdk17 (MGP_SPRETEiJ_G0016547) #12	Cfap54 (MGP_SPRETEiJ_G0016546) #13	Nedd1 (MGP_SPRETEiJ_G0016545) #14	Tmpo (MGP_SPRETEiJ_G0016544) #15	Slc25a3 (MGP_SPRETEiJ_G0016543) #16	Ikbip (MGP_SPRETEiJ_G0016542) #17	Apaf1 (MGP_SPRETEiJ_G0016541) #18	Anks1b (MGP_SPRETEiJ_G0016540) #19	Uhrf1bp1l (MGP_SPRETEiJ_G0016539) #20	Actr6 (MGP_SPRETEiJ_G0016538) #21	Scyl2 (MGP_SPRETEiJ_G0016537) #22	Slc17a8 (MGP_SPRETEiJ_G0016536) #24	Nr1h4 (MGP_SPRETEiJ_G0016535) #25	Gas2l3 (MGP_SPRETEiJ_G0016534) #26	Ano4 (MGP_SPRETEiJ_G0016533) #27	Slc5a8 (MGP_SPRETEiJ_G0016532) #28	Utp20 (MGP_SPRETEiJ_G0016531) #29	Arl1 (MGP_SPRETEiJ_G0016530) #30	Spic (MGP_SPRETEiJ_G0016529) #31	Mybpc1 (MGP_SPRETEiJ_G0016528) #32	MGP_SPRETEiJ_G0016527 #33	Sycp3 (MGP_SPRETEiJ_G0016526) #34	Gnptab (MGP_SPRETEiJ_G0016525) #35	Dram1 (MGP_SPRETEiJ_G0016524) #36	Washc3 (MGP_SPRETEiJ_G0016523) #37	Nup37 (MGP_SPRETEiJ_G0016522)
Steppe mouse	MODERN SPECIES	2939														Uhrf1bp1l (ENSMSIG00000017125) #20	Actr6 (ENSMSIG00000017172) #21	Scyl2 (ENSMSIG00000017210) #22	Slc17a8 (ENSMSIG00000017267) #24	Nr1h4 (ENSMSIG00000017294) #25	Gas2l3 (ENSMSIG00000017395) #26	Ano4 (ENSMSIG00000017553) #27	Slc5a8 (ENSMSIG00000017818) #28	ENSMSIG00000017854	Utp20 (ENSMSIG00000017862) #29	ENSMSIG00000017985	ENSMSIG00000017992	Spic (ENSMSIG00000018013) #31	Mybpc1 (ENSMSIG00000018042) #32
Mouse	MODERN SPECIES	1	Ccdc38 (ENSMUSG00000036168) #7	Amdhd1 (ENSMUSG00000015890) #8	Hal (ENSMUSG00000020017) #9	Lta4h (ENSMUSG00000015889) #10	Elk3 (ENSMUSG00000008398) #11	Cdk17 (ENSMUSG00000020015) #12	Cfap54 (ENSMUSG00000020014) #13	Nedd1 (ENSMUSG00000019988) #14	Tmpo (ENSMUSG00000019961) #15	Slc25a3 (ENSMUSG00000061904) #16	Ikbip (ENSMUSG00000019975) #17	Apaf1 (ENSMUSG00000019979) #18	Anks1b (ENSMUSG00000058589) #19	Uhrf1bp1l (ENSMUSG00000019951) #20	Actr6 (ENSMUSG00000019948) #21	Scyl2 (ENSMUSG00000069539) #22	Slc17a8 (ENSMUSG00000019935) #24	Nr1h4 (ENSMUSG00000047638) #25	Gas2l3 (ENSMUSG00000074802) #26	Ano4 (ENSMUSG00000035189) #27	Slc5a8 (ENSMUSG00000020062) #28	Utp20 (ENSMUSG00000004356) #29	Arl1 (ENSMUSG00000060904) #30	Spic (ENSMUSG00000004359) #31	Mybpc1 (ENSMUSG00000020061) #32	Sycp3 (ENSMUSG00000020059) #34	Chpt1 (ENSMUSG00000060002) #33	Gnptab (ENSMUSG00000035311) #35	Dram1 (ENSMUSG00000020057) #36	Washc3 (ENSMUSG00000020056) #37	Nup37 (ENSMUSG00000035351)
Ryukyu mouse	MODERN SPECIES	1	Ccdc38 (MGP_CAROLIEiJ_G0015734) #7	Amdhd1 (MGP_CAROLIEiJ_G0015733) #8	Hal (MGP_CAROLIEiJ_G0015732) #9	Lta4h (MGP_CAROLIEiJ_G0015731) #10	Elk3 (MGP_CAROLIEiJ_G0015730) #11	Cdk17 (MGP_CAROLIEiJ_G0015729) #12	Cfap54 (MGP_CAROLIEiJ_G0015728) #13	Nedd1 (MGP_CAROLIEiJ_G0015727) #14	MGP_CAROLIEiJ_G0015726 ##15	Slc25a3 (MGP_CAROLIEiJ_G0015725) #16	Ikbip (MGP_CAROLIEiJ_G0015724) #17	Apaf1 (MGP_CAROLIEiJ_G0015723) #18	Anks1b (MGP_CAROLIEiJ_G0015722) #19	Uhrf1bp1l (MGP_CAROLIEiJ_G0015721) #20	Actr6 (MGP_CAROLIEiJ_G0015720) #21	Scyl2 (MGP_CAROLIEiJ_G0015719) #22	Slc17a8 (MGP_CAROLIEiJ_G0015718) #24	Nr1h4 (MGP_CAROLIEiJ_G0015717) #25	Gas2l3 (MGP_CAROLIEiJ_G0015716) #26	Ano4 (MGP_CAROLIEiJ_G0015715) #27	Slc5a8 (MGP_CAROLIEiJ_G0015714) #28	Utp20 (MGP_CAROLIEiJ_G0015713) #29	Arl1 (MGP_CAROLIEiJ_G0015712) #30	MGP_CAROLIEiJ_G0015711 #31	Mybpc1 (MGP_CAROLIEiJ_G0015710) #32	Sycp3 (MGP_CAROLIEiJ_G0015709) #34	Chpt1 (MGP_CAROLIEiJ_G0015708) #33	Gnptab (MGP_CAROLIEiJ_G0015707) #35	Dram1 (MGP_CAROLIEiJ_G0015706) #36	Washc3 (MGP_CAROLIEiJ_G0015705) #37	Nup37 (MGP_CAROLIEiJ_G0015704)
Shrew mouse	MODERN SPECIES	22	Ccdc38 (MGP_PahariEiJ_G0031351) #7	MGP_PahariEiJ_G0031352 #8	Hal (MGP_PahariEiJ_G0031353) #9	Lta4h (MGP_PahariEiJ_G0031354) #10	Elk3 (MGP_PahariEiJ_G0031355) #11	Cdk17 (MGP_PahariEiJ_G0031356) #12	Cfap54 (MGP_PahariEiJ_G0031357) #13	Nedd1 (MGP_PahariEiJ_G0031358) #14	Tmpo (MGP_PahariEiJ_G0031359) #15	Slc25a3 (MGP_PahariEiJ_G0031360) #16	Ikbip (MGP_PahariEiJ_G0031361) #17	Apaf1 (MGP_PahariEiJ_G0031362) #18	Anks1b (MGP_PahariEiJ_G0031363) #19	Uhrf1bp1l (MGP_PahariEiJ_G0031364) #20	Actr6 (MGP_PahariEiJ_G0031365) #21	Scyl2 (MGP_PahariEiJ_G0031366) #22	Slc17a8 (MGP_PahariEiJ_G0031367) #24	Nr1h4 (MGP_PahariEiJ_G0031368) #25	Gas2l3 (MGP_PahariEiJ_G0031369) #26	Ano4 (MGP_PahariEiJ_G0031370) #27	Slc5a8 (MGP_PahariEiJ_G0031371) #28	Utp20 (MGP_PahariEiJ_G0031372) #29	Arl1 (MGP_PahariEiJ_G0031373) #30	Spic (MGP_PahariEiJ_G0031374) #31	Mybpc1 (MGP_PahariEiJ_G0031375) #32	MGP_PahariEiJ_G0031376 #33	Sycp3 (MGP_PahariEiJ_G0031377) #34	Gnptab (MGP_PahariEiJ_G0031378) #35	Dram1 (MGP_PahariEiJ_G0031379) #36	Washc3 (MGP_PahariEiJ_G0031380) #37	Nup37 (MGP_PahariEiJ_G0031381)
Rat	MODERN SPECIES	17	Hal (ENSRNOG00000004502) #9	Lta4h (ENSRNOG00000004494) #10	Elk3 (ENSRNOG00000004367) #11	Cdk17 (ENSRNOG00000004148) #12	Cfap54 (ENSRNOG00000024494) #13	Nedd1 (ENSRNOG00000004011) #14	AABR07056611.1 (ENSRNOG00000055726)	ENSRNOG00000064198	Tmpo (ENSRNOG00000008797) #16	Ikbip (ENSRNOG00000008247) #17	Apaf1 (ENSRNOG00000008022) #18	Anks1b (ENSRNOG00000024870) #19	Bltp3b (ENSRNOG00000050317) #20	ENSRNOG00000065049	Actr6 (ENSRNOG00000007875) #21	Scyl2 (ENSRNOG00000024955) #22	Slc17a8 (ENSRNOG00000007581) #24	ENSRNOG00000068987	Nr1h4 (ENSRNOG00000007197) #25	Gas2l3 (ENSRNOG00000063755) #26	LOC103692829 (ENSRNOG00000061320)	AABR07056556.1 (ENSRNOG00000032424)	Ano4 (ENSRNOG00000006841) #27	Slc5a8 (ENSRNOG00000006367) #28	Utp20 (ENSRNOG00000005823) #29	Arl1 (ENSRNOG00000005763) #30	Rps12l4 (ENSRNOG00000043412)	Spic (ENSRNOG00000005720) #31	Mybpc1 (ENSRNOG00000056493) #32	Sycp3 (ENSRNOG00000005270) #34	Chpt1 (ENSRNOG00000058271) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	1572													ENSNGAG00000017932 #19	Uhrf1bp1l (ENSNGAG00000016616) #20	Actr6 (ENSNGAG00000014912) #21	ENSNGAG00000014516 #22	ENSNGAG00000014156	Slc17a8 (ENSNGAG00000013808) #24
Lesser Egyptian jerboa	MODERN SPECIES	42	Hal (ENSJJAG00000010741) #9	Lta4h (ENSJJAG00000011318) #10	Elk3 (ENSJJAG00000010853) #11	Cdk17 (ENSJJAG00000013291) #12	ENSJJAG00000014966	ENSJJAG00000017399	Nedd1 (ENSJJAG00000010994) #14	Tmpo (ENSJJAG00000018127) #15	Slc25a3 (ENSJJAG00000013339) #16	ENSJJAG00000017372 #17	Apaf1 (ENSJJAG00000014169) #18	ENSJJAG00000023848 #19	ENSJJAG00000018878 #19	Uhrf1bp1l (ENSJJAG00000023679) #20	Actr6 (ENSJJAG00000012412) #21	ENSJJAG00000014007 #22	Slc17a8 (ENSJJAG00000016274) #24	Nr1h4 (ENSJJAG00000017445) #25	ENSJJAG00000017605 #26	Ano4 (ENSJJAG00000021544) #27	Slc5a8 (ENSJJAG00000018761) #28	Utp20 (ENSJJAG00000019321) #29	ENSJJAG00000020719 #30	Mybpc1 (ENSJJAG00000020768) #32	ENSJJAG00000001967 #33	Sycp3 (ENSJJAG00000017653) #34	ENSJJAG00000022706 #35	Dram1 (ENSJJAG00000023953) #36	Washc3 (ENSJJAG00000019930) #37	Nup37 (ENSJJAG00000018864)	ENSJJAG00000021125
Kangaroo rat	MODERN SPECIES	322	Cdk17 (ENSDORG00000014799) #12	ENSDORG00000025108	ENSDORG00000005572	ENSDORG00000025279	ENSDORG00000026947	Nedd1 (ENSDORG00000001204) #14	ENSDORG00000027259	ENSDORG00000023396 ##15	Slc25a3 (ENSDORG00000011431) #16	Ikbip (ENSDORG00000011434) #17	Apaf1 (ENSDORG00000009253) #18	ENSDORG00000009254 #19	ENSDORG00000028031 #19	Uhrf1bp1l (ENSDORG00000024278) #20	Actr6 (ENSDORG00000012723) #21	ENSDORG00000003101 #22	Slc17a8 (ENSDORG00000029543) #24	Nr1h4 (ENSDORG00000001224) #25	ENSDORG00000001225 #26	Ano4 (ENSDORG00000001013) #27	Slc5a8 (ENSDORG00000013252) #28	Utp20 (ENSDORG00000014762) #29	Arl1 (ENSDORG00000014770) #30	Spic (ENSDORG00000003709) #31	Mybpc1 (ENSDORG00000004026) #32	Chpt1 (ENSDORG00000004030) #33	ENSDORG00000004032 #34	Gnptab (ENSDORG00000023503) #35	Dram1 (ENSDORG00000003107) #36	Washc3 (ENSDORG00000029910) #37	Nup37 (ENSDORG00000002780)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00940000163320	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT00940000153110.B #7	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118.y.a #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Long-tailed chinchilla	MODERN SPECIES	112	HAL (ENSCLAG00000009969) #9	Lta4h (ENSCLAG00000011828) #10	ELK3 (ENSCLAG00000014957) #11	CDK17 (ENSCLAG00000012821) #12	CFAP54 (ENSCLAG00000008151) #13	NEDD1 (ENSCLAG00000013064) #14	ENSCLAG00000007083	TMPO (ENSCLAG00000007244) ##15	SLC25A3 (ENSCLAG00000007243) #16	IKBIP (ENSCLAG00000008628) #17	APAF1 (ENSCLAG00000009227) #18	ANKS1B (ENSCLAG00000009661) #19	ENSCLAG00000009179	BLTP3B (ENSCLAG00000012501) #20	ACTR6 (ENSCLAG00000007878) #21	SCYL2 (ENSCLAG00000010496) #22	SLC17A8 (ENSCLAG00000011320) #24	ENSCLAG00000015655	NR1H4 (ENSCLAG00000012775) #25	GAS2L3 (ENSCLAG00000007654) #26	ANO4 (ENSCLAG00000014090) #27	SLC5A8 (ENSCLAG00000009574) #28	UTP20 (ENSCLAG00000011569) #29	ARL1 (ENSCLAG00000008180) #30	SPIC (ENSCLAG00000016048) #31	MYBPC1 (ENSCLAG00000006936) #32	ENSCLAG00000012024 #33	SYCP3 (ENSCLAG00000006962) #34	GNPTAB (ENSCLAG00000007404) #35	DRAM1 (ENSCLAG00000008068) #36	WASHC3 (ENSCLAG00000008749) #37
Degu	MODERN SPECIES	45	ENSODEG00000010263	ENSODEG00000019742	ENSODEG00000019648	ENSODEG00000013377 #15	SLC25A3 (ENSODEG00000009995) #16	ENSODEG00000010948 #17	APAF1 (ENSODEG00000010122) #18	ENSODEG00000019813	ENSODEG00000010313 #19	ENSODEG00000010573	ENSODEG00000010991	ENSODEG00000010669 #19	ENSODEG00000011572	BLTP3B (ENSODEG00000010196) #20	ENSODEG00000010649 #21	ENSODEG00000011114 #22	SLC17A8 (ENSODEG00000010869) #24	NR1H4 (ENSODEG00000012027) #25	ENSODEG00000010407 #26	ENSODEG00000009780	ANO4 (ENSODEG00000011009) #27	ENSODEG00000010202	SLC5A8 (ENSODEG00000010696) #28	UTP20 (ENSODEG00000013411) #29	ENSODEG00000010531 #30	SPIC (ENSODEG00000010078) #31	ENSODEG00000010424	MYBPC1 (ENSODEG00000012077) #32	CHPT1 (ENSODEG00000011230) #33	SYCP3 (ENSODEG00000011961) #34	GNPTAB (ENSODEG00000012289) #35
Guinea pig	MODERN SPECIES	9	AMDHD1 (ENSCPOG00000001031) #8	HAL (ENSCPOG00000013043) #9	LTA4H (ENSCPOG00000013048) #10	ELK3 (ENSCPOG00000005065) #11	CDK17 (ENSCPOG00000005070) #12	CFAP54 (ENSCPOG00000009624) #13	NEDD1 (ENSCPOG00000009631) #14	ENSCPOG00000004978	TMPO (ENSCPOG00000011604) ##15	SLC25A3 (ENSCPOG00000011606) #16	IKBIP (ENSCPOG00000040634) #17	APAF1 (ENSCPOG00000015196) #18	ANKS1B (ENSCPOG00000015197) #19	BLTP3B (ENSCPOG00000009379) #20	ACTR6 (ENSCPOG00000024022) #21	SCYL2 (ENSCPOG00000015459) #22	SLC17A8 (ENSCPOG00000009083) #24	NR1H4 (ENSCPOG00000002168) #25	GAS2L3 (ENSCPOG00000036868) #26	ANO4 (ENSCPOG00000008963) #27	SLC5A8 (ENSCPOG00000010055) #28	UTP20 (ENSCPOG00000003129) #29	ARL1 (ENSCPOG00000026014) #30	SPIC (ENSCPOG00000007301) #31	MYBPC1 (ENSCPOG00000011180) #32	CHPT1 (ENSCPOG00000001199) #33	SYCP3 (ENSCPOG00000001202) #34	GNPTAB (ENSCPOG00000022501) #35	ENSCPOG00000034099 #36	WASHC3 (ENSCPOG00000036997) #37	NUP37 (ENSCPOG00000011895)
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000006066 #12	CFAP54 (ENSHGLG00000004618) #13	ENSHGLG00000011260	NEDD1 (ENSHGLG00000012733) #14	ENSHGLG00000037736	ENSHGLG00000032527	ENSHGLG00000010848 #15	ENSHGLG00000008601 #16	IKBIP (ENSHGLG00000047603) #17	ENSHGLG00000049820	APAF1 (ENSHGLG00000007198) #18	ENSHGLG00000016527 #19	ENSHGLG00000041800 #19	BLTP3B (ENSHGLG00000008977) #20	ACTR6 (ENSHGLG00000006255) #21	SCYL2 (ENSHGLG00000004458) #22	SLC17A8 (ENSHGLG00000004252) #24	NR1H4 (ENSHGLG00000038152) #25	ENSHGLG00000006370	ENSHGLG00000039506	ANO4 (ENSHGLG00000010936) #27	SLC5A8 (ENSHGLG00000008465) #28	ENSHGLG00000046315 #30	ENSHGLG00000044877	SPIC (ENSHGLG00000039584) #31	ENSHGLG00000050337 #32	ENSHGLG00000039302	ENSHGLG00000005709 #33	SYCP3 (ENSHGLG00000004845) #34	ENSHGLG00000034643 #35	DRAM1 (ENSHGLG00000009546) #36
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00940000163320	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005005745 #12	ENSSVLG00005005778	ENSSVLG00005005829	NEDD1 (ENSSVLG00005005868) #14	ENSSVLG00005006011 #15	ENSSVLG00005006115 #16	IKBIP (ENSSVLG00005006279) #17	APAF1 (ENSSVLG00005006518) #18	ENSSVLG00005007229	ANKS1B (ENSSVLG00005007585) #19	GARIN6 (ENSSVLG00005008609)	ENSSVLG00005008635	ENSSVLG00005008665	BLTP3B (ENSSVLG00005008712) #20	ACTR6 (ENSSVLG00005008778) #21	ENSSVLG00005008897 #22	SLC17A8 (ENSSVLG00005009180) #24	NR1H4 (ENSSVLG00005009339) #25	GAS2L3 (ENSSVLG00005009544) #26	ANO4 (ENSSVLG00005009692) #27	SLC5A8 (ENSSVLG00005010200) #28	ENSSVLG00005010295	UTP20 (ENSSVLG00005010358) #29	ARL1 (ENSSVLG00005007015) #30	ENSSVLG00005007121 #31	MYBPC1 (ENSSVLG00005007401) #32	CHPT1 (ENSSVLG00005008570) #33	SYCP3 (ENSSVLG00005008597) #34	GNPTAB (ENSSVLG00005008675) #35	DRAM1 (ENSSVLG00005008749) #36	WASHC3 (ENSSVLG00005008789) #37
Eurasian red squirrel	MODERN SPECIES		IFFO2 (ENSSVLG00005001755)	UBR4 (ENSSVLG00005001808)	EMC1 (ENSSVLG00005001895)	ENSSVLG00005001942	ENSSVLG00005001971	ENSSVLG00005001993	ENSSVLG00005002008	SLC66A1 (ENSSVLG00005002036)	CAPZB (ENSSVLG00005002066)	ENSSVLG00005002124	ENSSVLG00005002145	NBL1 (ENSSVLG00005002155)	HTR6 (ENSSVLG00005002183)	TMCO4 (ENSSVLG00005002227)	RNF186 (ENSSVLG00005002260)	ENSSVLG00005002272 #22	ENSSVLG00005002288	OTUD3 (ENSSVLG00005002298)	PLA2G2E (ENSSVLG00005002318)	ENSSVLG00005002333	PLA2G2A (ENSSVLG00005002419)	PLA2G5 (ENSSVLG00005002531)	PLA2G2D (ENSSVLG00005002551)	PLA2G2F (ENSSVLG00005002583)	PLA2G2C (ENSSVLG00005002602)	UBXN10 (ENSSVLG00005002615)	VWA5B1 (ENSSVLG00005002638)	CAMK2N1 (ENSSVLG00005002728)	MUL1 (ENSSVLG00005002743)	FAM43B (ENSSVLG00005002758)	ENSSVLG00005002772
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000164546	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00940000163320	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a.e #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00390000008645 #8	ENSGT00390000009047.b #9	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00940000163320	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000155118 #30	ENSGT00940000155067.a.e #31	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777
Squirrel	MODERN SPECIES	92									TMPO (ENSSTOG00000009169) ##15	SLC25A3 (ENSSTOG00000027633) #16	IKBIP (ENSSTOG00000026100) #17	APAF1 (ENSSTOG00000028539) #18	ANKS1B (ENSSTOG00000012238) #19	BLTP3B (ENSSTOG00000004850) #20	ACTR6 (ENSSTOG00000004895) #21	SCYL2 (ENSSTOG00000011753) #22	SLC17A8 (ENSSTOG00000011763) #24	NR1H4 (ENSSTOG00000011771) #25	GAS2L3 (ENSSTOG00000011780) #26	ANO4 (ENSSTOG00000016283) #27	SLC5A8 (ENSSTOG00000016289) #28	UTP20 (ENSSTOG00000015995) #29	ARL1 (ENSSTOG00000016022) #30	ENSSTOG00000015457 #31	MYBPC1 (ENSSTOG00000003034) #32	CHPT1 (ENSSTOG00000011736) #33	SYCP3 (ENSSTOG00000001853) #34	GNPTAB (ENSSTOG00000001855) #35	DRAM1 (ENSSTOG00000001865) #36	WASHC3 (ENSSTOG00000029775) #37	NUP37 (ENSSTOG00000001874)
Arctic ground squirrel	MODERN SPECIES	6	HAL (ENSUPAG00010006474) #9	LTA4H (ENSUPAG00010006436) #10	ELK3 (ENSUPAG00010006425) #11	ENSUPAG00010006422	CDK17 (ENSUPAG00010006388) #12	CFAP54 (ENSUPAG00010006280) #13	NEDD1 (ENSUPAG00010006247) #14	ENSUPAG00010006109 #15	SLC25A3 (ENSUPAG00010006073) #16	IKBIP (ENSUPAG00010006055) #17	APAF1 (ENSUPAG00010006002) #18	GARIN6 (ENSUPAG00010005992)	ANKS1B (ENSUPAG00010003556) #19	BLTP3B (ENSUPAG00010003512) #20	ACTR6 (ENSUPAG00010003498) #21	SCYL2 (ENSUPAG00010003458) #22	SLC17A8 (ENSUPAG00010003443) #24	NR1H4 (ENSUPAG00010003387) #25	GAS2L3 (ENSUPAG00010003356) #26	ENSUPAG00010003346	ANO4 (ENSUPAG00010003185) #27	SLC5A8 (ENSUPAG00010003154) #28	UTP20 (ENSUPAG00010003081) #29	ARL1 (ENSUPAG00010003075) #30	MYBPC1 (ENSUPAG00010002997) #32	CHPT1 (ENSUPAG00010002983) #33	SYCP3 (ENSUPAG00010002966) #34	GNPTAB (ENSUPAG00010002938) #35	DRAM1 (ENSUPAG00010002927) #36	WASHC3 (ENSUPAG00010002918) #37	NUP37 (ENSUPAG00010002890)
Alpin marmot	MODERN SPECIES	11	LTA4H (ENSMMMG00000020008) #10	ELK3 (ENSMMMG00000020001) #11	CDK17 (ENSMMMG00000019989) #12	ENSMMMG00000019968	ENSMMMG00000019958	NEDD1 (ENSMMMG00000019953) #14	ENSMMMG00000019863 #15	SLC25A3 (ENSMMMG00000019846) #16	IKBIP (ENSMMMG00000019840) #17	APAF1 (ENSMMMG00000019774) #18	ENSMMMG00000019768	GARIN6 (ENSMMMG00000019762)	ANKS1B (ENSMMMG00000018366) #19	BLTP3B (ENSMMMG00000018268) #20	ACTR6 (ENSMMMG00000018236) #21	SCYL2 (ENSMMMG00000018205) #22	SLC17A8 (ENSMMMG00000018190) #24	NR1H4 (ENSMMMG00000018110) #25	GAS2L3 (ENSMMMG00000018095) #26	ANO4 (ENSMMMG00000017942) #27	SLC5A8 (ENSMMMG00000017894) #28	UTP20 (ENSMMMG00000017841) #29	ARL1 (ENSMMMG00000017821) #30	SPIC (ENSMMMG00000017812) #31	MYBPC1 (ENSMMMG00000017763) #32	CHPT1 (ENSMMMG00000017731) #33	SYCP3 (ENSMMMG00000017715) #34	GNPTAB (ENSMMMG00000017694) #35	DRAM1 (ENSMMMG00000017688) #36	WASHC3 (ENSMMMG00000017678) #37	NUP37 (ENSMMMG00000017664)
Lagomorpha	ANCESTRAL SPECIES	22	ENSGT00940000156375 #10	ENSGT00940000157129 #11	ENSGT00940000155834 #12	ENSGT00940000162970	ENSGT00940000162446 #13	ENSGT00390000001561 #14	ENSGT00940000154098.a.d #15	ENSGT00390000008708 #16	ENSGT00500000045001 #17	ENSGT00940000157710 #18	ENSGT00940000154572.`c #19	ENSGT00940000162770	ENSGT00600000084428.b #20	ENSGT00720000108833 #21	ENSGT00950000182976.a.a	ENSGT00880000138031 #22	ENSGT00940000158187 #24	ENSGT00940000158037 #25	ENSGT00940000159389 #26	ENSGT00940000158600 #27	ENSGT00940000155166.A #28	ENSGT00390000016813 #29	ENSGT00940000158254 #32	ENSGT00950000183117.a.a #33	ENSGT00390000000062.x.a #34	ENSGT00390000006747 #35	ENSGT01030000234578.B.a #36	ENSGT00390000014084 #37	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984
Rabbit	MODERN SPECIES	15	LTA4H (ENSOCUG00000005535) #10	ELK3 (ENSOCUG00000034370) #11	CDK17 (ENSOCUG00000013583) #12	CFAP54 (ENSOCUG00000013917) #13	NEDD1 (ENSOCUG00000010944) #14	ENSOCUG00000012692 #15	SLC25A3 (ENSOCUG00000011847) #16	IKBIP (ENSOCUG00000011854) #17	APAF1 (ENSOCUG00000011860) #18	ANKS1B (ENSOCUG00000029510) #19	ENSOCUG00000011887	ENSOCUG00000032944 #20	ENSOCUG00000017132 #20	ACTR6 (ENSOCUG00000000141) #21	ENSOCUG00000024669	SCYL2 (ENSOCUG00000009146) #22	SLC17A8 (ENSOCUG00000015995) #24	NR1H4 (ENSOCUG00000007177) #25	GAS2L3 (ENSOCUG00000007182) #26	ENSOCUG00000033171	ANO4 (ENSOCUG00000000881) #27	ENSOCUG00000036878	SLC5A8 (ENSOCUG00000003486) #28	ENSOCUG00000037051	UTP20 (ENSOCUG00000010475) #29	ARL1 (ENSOCUG00000002217) #30	ENSOCUG00000029302	ENSOCUG00000030138	ENSOCUG00000008070 #31	ENSOCUG00000033531	MYBPC1 (ENSOCUG00000009276) #32
Pika	MODERN SPECIES	1374																ENSOPRG00000007982 #22	ENSOPRG00000008010 #24