Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000173218	ENSGT00940000156334 #9	ENSGT00940000158165 #10	ENSGT00390000005848 #11	ENSGT00940000157275 #12	ENSGT00950000185173	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00950000185930 #15	ENSGT00390000014448 #16	ENSGT00940000157983 #17	ENSGT00390000010491.lb #18	ENSGT00540000070023.c.b.b #19	ENSGT00940000155210.a.b #20	ENSGT00940000156910 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529 #28	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352	ENSGT00640000091574
Canidae	ANCESTRAL SPECIES	12	ENSGT00390000003290 #8	ENSGT00940000173218	ENSGT00940000156334 #9	ENSGT00940000158165 #10	ENSGT00390000005848 #11	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00950000185930 #15	ENSGT00390000014448 #16	ENSGT00940000157983 #17	ENSGT00390000010491.lb #18	ENSGT00540000070023.c.b.b #19	ENSGT00940000155210.a.b #20	ENSGT00940000156910 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529 #28	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155052.e.b.b.c.a	ENSGT00940000155352
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00390000003290 #8	ENSGT00940000173218	ENSGT00940000156334 #9	ENSGT00940000158165 #10	ENSGT00390000005848 #11	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00950000185930 #15	ENSGT00390000014448 #16	ENSGT00940000157983.c #17	ENSGT00390000010491.lb #18	ENSGT00540000070023.c.b.b #19	ENSGT00940000155210.a.b #20	ENSGT00940000156910 #21	ENSGT00950000182952.C #22	ENSGT00940000158382 #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529 #28	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000164524 #37	ENSGT00940000155052.e.a
Dog	MODERN SPECIES	6	METAP2 (ENSCAFG00845023414) #7	VEZT (ENSCAFG00845023106) #8	FGD6 (ENSCAFG00845022871) #9	NR2C1 (ENSCAFG00845022744) #10	NDUFA12 (ENSCAFG00845022634) #11	TMCC3 (ENSCAFG00845022396) #12	CEP83 (ENSCAFG00845022275) #13	PLXNC1 (ENSCAFG00845021595) #14	ENSCAFG00845021424 #15	CRADD (ENSCAFG00845021328) #16	ENSCAFG00845021192 #17	MRPL42 (ENSCAFG00845021094) #18	UBE2N (ENSCAFG00845021013) #19	NUDT4 (ENSCAFG00845020960) #20	EEA1 (ENSCAFG00845020208) #21	BTG1 (ENSCAFG00845020084) #22	ENSCAFG00845020040 #23	DCN (ENSCAFG00845019761) #24	LUM (ENSCAFG00845019701) #25	KERA (ENSCAFG00845019646) #26	EPYC (ENSCAFG00845019572) #27	CCER1 (ENSCAFG00845019552) #28	ATP2B1 (ENSCAFG00845019043) #29	POC1B (ENSCAFG00845018770) #30	DUSP6 (ENSCAFG00845018644) #31	KITLG (ENSCAFG00845018506) #32	TMTC3 (ENSCAFG00845018327) #33	CEP290 (ENSCAFG00845017266) #34	C15H12orf29 (ENSCAFG00845016711) #35	C15H12orf50 (ENSCAFG00845016524) #36	ENSCAFG00845016472 #37
Dingo	MODERN SPECIES	277	ENSCAFG00020023187	FGD6 (ENSCAFG00020023183) #9	NR2C1 (ENSCAFG00020023077) #10	NDUFA12 (ENSCAFG00020023057) #11	TMCC3 (ENSCAFG00020023056) #12	CEP83 (ENSCAFG00020023051) #13	PLXNC1 (ENSCAFG00020023009) #14	ENSCAFG00020022981 #15	ENSCAFG00020022976 #16	SOCS2 (ENSCAFG00020022971) #17	MRPL42 (ENSCAFG00020022967) #18	ENSCAFG00020022966 ##19	ENSCAFG00020022964 #20	ENSCAFG00020022963	EEA1 (ENSCAFG00020022666) #21	BTG1 (ENSCAFG00020022634) #22	DCN (ENSCAFG00020022624) #24	LUM (ENSCAFG00020022621) #25	KERA (ENSCAFG00020022620) #26	EPYC (ENSCAFG00020022615) #27	CCER1 (ENSCAFG00020022614) #28	ATP2B1 (ENSCAFG00020016571) #29	POC1B (ENSCAFG00020016403) #30	DUSP6 (ENSCAFG00020016400) #31	ENSCAFG00020016396 #32	ENSCAFG00020016394 #32	TMTC3 (ENSCAFG00020016371) #33	CEP290 (ENSCAFG00020016258) #34	C12orf29 (ENSCAFG00020016248) #35	C12orf50 (ENSCAFG00020016242) #36	ENSCAFG00020016235 #37
Red fox	MODERN SPECIES	9					TMCC3 (ENSVVUG00000012324) #12	CEP83 (ENSVVUG00000012315) #13	PLXNC1 (ENSVVUG00000011903) #14	ENSVVUG00000011872	CRADD (ENSVVUG00000011866) #16	ENSVVUG00000011846 #17	MRPL42 (ENSVVUG00000011842) #18	ENSVVUG00000011840 ##19	NUDT4 (ENSVVUG00000011834) #20	EEA1 (ENSVVUG00000011772) #21	ENSVVUG00000011745	BTG1 (ENSVVUG00000011741) #22	DCN (ENSVVUG00000011722) #24	LUM (ENSVVUG00000011715) #25	KERA (ENSVVUG00000011712) #26	EPYC (ENSVVUG00000011701) #27	CCER1 (ENSVVUG00000011693) #28	ATP2B1 (ENSVVUG00000011650) #29	ENSVVUG00000011636 #30	ENSVVUG00000011627 #30	DUSP6 (ENSVVUG00000011620) #31	KITLG (ENSVVUG00000011565) #32	TMTC3 (ENSVVUG00000011546) #33	CEP290 (ENSVVUG00000011505) #34	C12orf29 (ENSVVUG00000011487) #35	C12orf50 (ENSVVUG00000011456) #36	ENSVVUG00000011423
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000173218	ENSGT00940000156334 #9	ENSGT00940000158165 #10	ENSGT00390000005848 #11	ENSGT00940000157275 #12	ENSGT00950000185173	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00950000185930 #15	ENSGT00390000014448 #16	ENSGT00940000157983 #17	ENSGT00390000010491.lb #18	ENSGT00540000070023.c.b.b #19	ENSGT00940000155210.a.b #20	ENSGT00940000156910 #21	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529 #28	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352	ENSGT00640000091574
Mustelinae	ANCESTRAL SPECIES	4	ENSGT00940000155016 #7	ENSGT00390000003290 #8	ENSGT00940000156334 #9	ENSGT00940000158165 #10	ENSGT00390000005848 #11	ENSGT00940000157275 #12	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00950000185930 #15	ENSGT00390000014448 #16	ENSGT00940000157983 #17	ENSGT00390000010491.lb #18	ENSGT00540000070023.d.m.b ##19	ENSGT00940000155210.a.b #20	ENSGT00940000156910 #21	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b #25	ENSGT00940000158968 #26	ENSGT00940000157574 #27	ENSGT00730000111529 #28	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352	ENSGT00640000091574
Ferret	MODERN SPECIES	185	VEZT (ENSMPUG00000007304) #8	FGD6 (ENSMPUG00000007314) #9	NR2C1 (ENSMPUG00000007335) #10	NDUFA12 (ENSMPUG00000007354) #11	TMCC3 (ENSMPUG00000007383) #12	CEP83 (ENSMPUG00000007387) #13	ENSMPUG00000007401 #14	ENSMPUG00000007413 #14	ENSMPUG00000007427	CRADD (ENSMPUG00000007433) #16	ENSMPUG00000018718 #15	SOCS2 (ENSMPUG00000007443) #17	ENSMPUG00000007452 ##19	ENSMPUG00000007490 #20	EEA1 (ENSMPUG00000007498) #21	BTG1 (ENSMPUG00000007519) #22	DCN (ENSMPUG00000007528) #24	LUM (ENSMPUG00000007539) #25	KERA (ENSMPUG00000007541) #26	EPYC (ENSMPUG00000007552) #27	CCER1 (ENSMPUG00000018720) #28	ATP2B1 (ENSMPUG00000007566) #29	POC1B (ENSMPUG00000007581) #30	ENSMPUG00000007590	DUSP6 (ENSMPUG00000007599) #31	KITLG (ENSMPUG00000007604) #32	TMTC3 (ENSMPUG00000007613) #33	CEP290 (ENSMPUG00000007620) #34	C12orf29 (ENSMPUG00000007654) #35	C12orf50 (ENSMPUG00000007661) #36	ENSMPUG00000007691
American mink	MODERN SPECIES	22										SOCS2 (ENSNVIG00000023891) #17	ENSNVIG00000023894 #18	ENSNVIG00000023897	ENSNVIG00000023900 ##19	ENSNVIG00000023902 #20	EEA1 (ENSNVIG00000023904) #21	BTG1 (ENSNVIG00000023913) #22	DCN (ENSNVIG00000023917) #24	LUM (ENSNVIG00000023923) #25	KERA (ENSNVIG00000023924) #26	EPYC (ENSNVIG00000023926) #27	CCER1 (ENSNVIG00000023927) #28	ENSNVIG00000023933	ATP2B1 (ENSNVIG00000000007) #29	POC1B (ENSNVIG00000000231) #30	DUSP6 (ENSNVIG00000000281) #31	ENSNVIG00000000305 #32	TMTC3 (ENSNVIG00000000330) #33	CEP290 (ENSNVIG00000000345) #34	C12orf29 (ENSNVIG00000000481) #35	C12orf50 (ENSNVIG00000000495) #36	ENSNVIG00000000519
Ursidae	ANCESTRAL SPECIES	13	ENSGT00390000003290 #8	ENSGT00940000173218	ENSGT00940000156334 #9	ENSGT00940000158165 #10	ENSGT00390000005848 #11	ENSGT00940000157275 #12	ENSGT00950000185173	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #16	ENSGT00940000157983 #17	ENSGT00390000010491.lb #18	ENSGT00540000070023.c.b.b #19	ENSGT00940000155210.a.b.db #20	ENSGT00940000156910 #21	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b.n #25	ENSGT00940000158968.b #26	ENSGT00940000157574 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Ursus	ANCESTRAL SPECIES	120	ENSGT00940000155016 #7	ENSGT00390000003290 #8	ENSGT00940000156334 #9	ENSGT00940000158165 #10	ENSGT00390000005848 #11	ENSGT00940000157275 #12	ENSGT00950000185173	ENSGT00940000154003.A #13	ENSGT01020000230394.e.a.a.b.a.a.b.a.b #14	ENSGT00390000014448 #16	ENSGT00940000157983 #17	ENSGT00390000010491.lb #18	ENSGT00540000070023.c.b.b #19	ENSGT00940000155210.a.b.db #20	ENSGT00940000156910 #21	ENSGT00950000182952.C #22	ENSGT00940000158382.d #24	ENSGT00940000158177.b.n #25	ENSGT00940000158968.b #26	ENSGT00940000157574 #27	ENSGT00940000158686 #29	ENSGT00940000160413 #30	ENSGT00940000158342.b #31	ENSGT00390000018272 #32	ENSGT00940000157538 #33	ENSGT00730000111039.C #34	ENSGT00500000044938 #35	ENSGT00920000149095.b #36	ENSGT00940000155352	ENSGT00640000091574	ENSGT00950000182839.A.c
Polar bear	MODERN SPECIES	144	VEZT (ENSUMAG00000003464) #8	FGD6 (ENSUMAG00000003327) #9	NR2C1 (ENSUMAG00000003306) #10	NDUFA12 (ENSUMAG00000003277) #11	ENSUMAG00000003265	TMCC3 (ENSUMAG00000003259) #12	ENSUMAG00000003254	CEP83 (ENSUMAG00000003241) #13	PLXNC1 (ENSUMAG00000003163) #14	CRADD (ENSUMAG00000003126) #16	SOCS2 (ENSUMAG00000003118) #17	MRPL42 (ENSUMAG00000003107) #18	ENSUMAG00000003099 ##19	ENSUMAG00000003093 #20	EEA1 (ENSUMAG00000002622) #21	BTG1 (ENSUMAG00000002516) #22	DCN (ENSUMAG00000002501) #24	LUM (ENSUMAG00000002496) #25	KERA (ENSUMAG00000002489) #26	EPYC (ENSUMAG00000002470) #27	ATP2B1 (ENSUMAG00000002449) #29	POC1B (ENSUMAG00000002434) #30	DUSP6 (ENSUMAG00000002421) #31	KITLG (ENSUMAG00000002410) #32	TMTC3 (ENSUMAG00000002232) #33	CEP290 (ENSUMAG00000001925) #34	C12orf29 (ENSUMAG00000001897) #35	C12orf50 (ENSUMAG00000001827) #36	ENSUMAG00000001817	MGAT4C (ENSUMAG00000001797)	NTS (ENSUMAG00000001768)
American black bear	MODERN SPECIES	7575																BTG1 (ENSUAMG00000011500) #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	6	METAP2 (ENSAMEG00000002192) #7	ENSAMEG00000028699	VEZT (ENSAMEG00000002219) #8	FGD6 (ENSAMEG00000002237) #9	NR2C1 (ENSAMEG00000002266) #10	NDUFA12 (ENSAMEG00000026868) #11	TMCC3 (ENSAMEG00000002299) #12	CEP83 (ENSAMEG00000009750) #13	PLXNC1 (ENSAMEG00000009772) #14	ENSAMEG00000009818 #17	MRPL42 (ENSAMEG00000009832) #18	UBE2N (ENSAMEG00000009833) #19	ENSAMEG00000009844 #20	EEA1 (ENSAMEG00000006621) #21	ENSAMEG00000024259	BTG1 (ENSAMEG00000018895) #22	DCN (ENSAMEG00000004377) #24	LUM (ENSAMEG00000014674) #25	KERA (ENSAMEG00000014670) #26	EPYC (ENSAMEG00000014653) #27	ATP2B1 (ENSAMEG00000016182) #29	POC1B (ENSAMEG00000001812) #30	DUSP6 (ENSAMEG00000001852) #31	KITLG (ENSAMEG00000002326) #32	TMTC3 (ENSAMEG00000002347) #33	CEP290 (ENSAMEG00000002356) #34	C12orf29 (ENSAMEG00000002394) #35	C12orf50 (ENSAMEG00000002419) #36	MGAT4C (ENSAMEG00000006123)	NTS (ENSAMEG00000006112)	RASSF9 (ENSAMEG00000006110)
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	703																ENSAMEG00000029781 #22
Giant Panda	MODERN SPECIES	671																ENSAMEG00000030857 #22