Mus_A	ANCESTRAL SPECIES		ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442 #25	ENSGT00390000010121 #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #34	ENSGT00860000134050 #35	ENSGT00390000006916.c.c #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442 #25	ENSGT00390000010121 #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #34	ENSGT00860000134050 #35	ENSGT00390000006916.c.c #36
Mus_C	ANCESTRAL SPECIES		ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442 #25	ENSGT00390000010121 #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #34	ENSGT00860000134050 #35	ENSGT00390000006916.c.c #36	ENSGT00390000014861 #37
spretus	MODERN SPECIES	11	Cst9 (MGP_SPRETEiJ_G0025335) #7	Cst13 (MGP_SPRETEiJ_G0025334) #8	Cst8 (MGP_SPRETEiJ_G0025333) #9	Cst12 (MGP_SPRETEiJ_G0025332) #10	Cstdc1 (MGP_SPRETEiJ_G0025331) #11	Cst11 (MGP_SPRETEiJ_G0025330) #12	Cstl1 (MGP_SPRETEiJ_G0025329) #13	Napb (MGP_SPRETEiJ_G0025328) #14	Gzf1 (MGP_SPRETEiJ_G0025327) #15	Nxt1 (MGP_SPRETEiJ_G0025326) #16	Cd93 (MGP_SPRETEiJ_G0025325) #17	Thbd (MGP_SPRETEiJ_G0025324) #18	Sstr4 (MGP_SPRETEiJ_G0025323) #19	Foxa2 (MGP_SPRETEiJ_G0025322) #20	Pax1 (MGP_SPRETEiJ_G0025321) #21	Nkx2-2 (MGP_SPRETEiJ_G0025320) #22	Nkx2-4 (MGP_SPRETEiJ_G0025319) #23	Xrn2 (MGP_SPRETEiJ_G0025318) #24	MGP_SPRETEiJ_G0025317 #25	Kiz (MGP_SPRETEiJ_G0025316) #26	Ralgapa2 (MGP_SPRETEiJ_G0025315) #27	Insm1 (MGP_SPRETEiJ_G0025314) #28	Cfap61 (MGP_SPRETEiJ_G0025313) #29	Crnkl1 (MGP_SPRETEiJ_G0025312) #30	Naa20 (MGP_SPRETEiJ_G0025311) #31	Rin2 (MGP_SPRETEiJ_G0025310) #32	Slc24a3 (MGP_SPRETEiJ_G0025309) #33	Dtd1 (MGP_SPRETEiJ_G0025308) #34	Smim26 (MGP_SPRETEiJ_G0025307) #35	Sec23b (MGP_SPRETEiJ_G0025306) #36	Rbbp9 (MGP_SPRETEiJ_G0025305) #37
Steppe mouse	MODERN SPECIES	17														Pax1 (ENSMSIG00000015104) #21	ENSMSIG00000015077	ENSMSIG00000015060 #22	Nkx2-4 (ENSMSIG00000015047) #23	Xrn2 (ENSMSIG00000014908) #24	Kiz (ENSMSIG00000014848) #26	Ralgapa2 (ENSMSIG00000014327) #27	ENSMSIG00000014314 #28	Cfap61 (ENSMSIG00000014190) #29	Crnkl1 (ENSMSIG00000014156) #30	Naa20 (ENSMSIG00000014125) #31	Rin2 (ENSMSIG00000014047) #32	ENSMSIG00000014037	Slc24a3 (ENSMSIG00000013851) #33	ENSMSIG00000013826
Mouse	MODERN SPECIES	11	Cst9 (ENSMUSG00000027445) #7	Cst13 (ENSMUSG00000036924) #8	Cst8 (ENSMUSG00000027442) #9	Cst12 (ENSMUSG00000027443) #10	Cstdc1 (ENSMUSG00000027444) #11	Cst11 (ENSMUSG00000036958) #12	Cstl1 (ENSMUSG00000055177) #13	Napb (ENSMUSG00000027438) #14	Gzf1 (ENSMUSG00000027439) #15	Nxt1 (ENSMUSG00000036992) #16	Cd93 (ENSMUSG00000027435) #17	Thbd (ENSMUSG00000074743) #18	Sstr4 (ENSMUSG00000037014) #19	Foxa2 (ENSMUSG00000037025) #20	Pax1 (ENSMUSG00000037034) #21	Nkx2-2 (ENSMUSG00000027434) #22	Nkx2-4 (ENSMUSG00000054160) #23	Xrn2 (ENSMUSG00000027433) #24	Kiz (ENSMUSG00000074749) #26	Ralgapa2 (ENSMUSG00000037110) #27	Insm1 (ENSMUSG00000068154) #28	Cfap61 (ENSMUSG00000037143) #29	Crnkl1 (ENSMUSG00000001767) #30	Naa20 (ENSMUSG00000002728) #31	Rin2 (ENSMUSG00000001768) #32	Slc24a3 (ENSMUSG00000063873) #33	Scp2d1 (ENSMUSG00000027431)	Dtd1 (ENSMUSG00000027430) #34	Smim26 (ENSMUSG00000074754) #35	Sec23b (ENSMUSG00000027429) #36	Rbbp9 (ENSMUSG00000027428) #37
Ryukyu mouse	MODERN SPECIES	11	Cst9 (MGP_CAROLIEiJ_G0024417) #7	Cst13 (MGP_CAROLIEiJ_G0024416) #8	Cst8 (MGP_CAROLIEiJ_G0024415) #9	Cst12 (MGP_CAROLIEiJ_G0024414) #10	Cstdc1 (MGP_CAROLIEiJ_G0024413) #11	Cst11 (MGP_CAROLIEiJ_G0024412) #12	Cstl1 (MGP_CAROLIEiJ_G0024411) #13	Napb (MGP_CAROLIEiJ_G0024410) #14	Gzf1 (MGP_CAROLIEiJ_G0024409) #15	Nxt1 (MGP_CAROLIEiJ_G0024408) #16	Cd93 (MGP_CAROLIEiJ_G0024407) #17	Thbd (MGP_CAROLIEiJ_G0024406) #18	Sstr4 (MGP_CAROLIEiJ_G0024405) #19	Foxa2 (MGP_CAROLIEiJ_G0024404) #20	Pax1 (MGP_CAROLIEiJ_G0024403) #21	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #22	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #23	Xrn2 (MGP_CAROLIEiJ_G0024400) #24	MGP_CAROLIEiJ_G0024399 #25	Kiz (MGP_CAROLIEiJ_G0024398) #26	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #27	Insm1 (MGP_CAROLIEiJ_G0024396) #28	Cfap61 (MGP_CAROLIEiJ_G0024395) #29	Crnkl1 (MGP_CAROLIEiJ_G0024394) #30	Naa20 (MGP_CAROLIEiJ_G0024393) #31	Rin2 (MGP_CAROLIEiJ_G0024392) #32	MGP_CAROLIEiJ_G0024391 #33	Scp2d1 (MGP_CAROLIEiJ_G0024390)	Dtd1 (MGP_CAROLIEiJ_G0024389) #34	Smim26 (MGP_CAROLIEiJ_G0024388) #35	Sec23b (MGP_CAROLIEiJ_G0024387) #36