Mammalia	ANCESTRAL SPECIES	22	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Theria	ANCESTRAL SPECIES	13	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000163249 #8	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Eutheria	ANCESTRAL SPECIES	11	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Glires	ANCESTRAL SPECIES	17	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Rat	MODERN SPECIES	13	Cst9l (ENSRNOG00000005162) #7	Cst13 (ENSRNOG00000005103) #8	Cst8 (ENSRNOG00000004989) #9	Cst12 (ENSRNOG00000004946) #10	LOC257643 (ENSRNOG00000004858) #11	Cst11 (ENSRNOG00000004808) #12	Cstl1 (ENSRNOG00000004779) #13	Napb (ENSRNOG00000004753) #14	Gzf1 (ENSRNOG00000004735) #15	Nxt1 (ENSRNOG00000004700) #16	Cd93 (ENSRNOG00000024799) #17	Thbd (ENSRNOG00000004687) #18	Sstr4 (ENSRNOG00000004641) #19	Foxa2 (ENSRNOG00000013133) #20	Pax1 (ENSRNOG00000024882) #21	Nkx2-2 (ENSRNOG00000012728) #22	Nkx2-4 (ENSRNOG00000012647) #23	Xrn2 (ENSRNOG00000011785) #24	Kiz (ENSRNOG00000025141) #25	ENSRNOG00000070752 #26	Ralgapa2 (ENSRNOG00000036964) #27	Insm1 (ENSRNOG00000068937) #28	AABR07054096.1 (ENSRNOG00000011028) #29	Crnkl1 (ENSRNOG00000010587) #30	Naa20 (ENSRNOG00000010523) #31	Rin2 (ENSRNOG00000010131) #32	Slc24a3 (ENSRNOG00000060687) #33	Scp2d1 (ENSRNOG00000009461) #34	Dtd1 (ENSRNOG00000008746) #35	Smim26 (ENSRNOG00000036971) #36	Sec23b (ENSRNOG00000008411) #37
Mus	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Shrew mouse	MODERN SPECIES	16	Cstdc2 (MGP_PahariEiJ_G0025860) ##7	Cst13 (MGP_PahariEiJ_G0025859) #8	Cst8 (MGP_PahariEiJ_G0025858) #9	Cst12 (MGP_PahariEiJ_G0025857) #10	Cstdc1 (MGP_PahariEiJ_G0025856) #11	Cst11 (MGP_PahariEiJ_G0025855) #12	Cstl1 (MGP_PahariEiJ_G0025854) #13	Napb (MGP_PahariEiJ_G0025853) #14	Gzf1 (MGP_PahariEiJ_G0025852) #15	Nxt1 (MGP_PahariEiJ_G0025851) #16	Cd93 (MGP_PahariEiJ_G0025850) #17	Thbd (MGP_PahariEiJ_G0025849) #18	Sstr4 (MGP_PahariEiJ_G0025848) #19	Foxa2 (MGP_PahariEiJ_G0025847) #20	Pax1 (MGP_PahariEiJ_G0025846) #21	Nkx2-2 (MGP_PahariEiJ_G0025845) #22	Nkx2-4 (MGP_PahariEiJ_G0025844) #23	Xrn2 (MGP_PahariEiJ_G0025843) #24	Kiz (MGP_PahariEiJ_G0025842) #25	Ralgapa2 (MGP_PahariEiJ_G0025841) #27	Insm1 (MGP_PahariEiJ_G0025840) #28	Cfap61 (MGP_PahariEiJ_G0025839) #29	Crnkl1 (MGP_PahariEiJ_G0025838) #30	Naa20 (MGP_PahariEiJ_G0025837) #31	Rin2 (MGP_PahariEiJ_G0025836) #32	MGP_PahariEiJ_G0025835 #33	Scp2d1 (MGP_PahariEiJ_G0025834) #34	Dtd1 (MGP_PahariEiJ_G0025833) #35	Smim26 (MGP_PahariEiJ_G0025832) #36	Sec23b (MGP_PahariEiJ_G0025831) #37	Rbbp9 (MGP_PahariEiJ_G0025830)
Mus_A	ANCESTRAL SPECIES		ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c.c #37
Ryukyu mouse	MODERN SPECIES	11	Cst9 (MGP_CAROLIEiJ_G0024417) #7	Cst13 (MGP_CAROLIEiJ_G0024416) #8	Cst8 (MGP_CAROLIEiJ_G0024415) #9	Cst12 (MGP_CAROLIEiJ_G0024414) #10	Cstdc1 (MGP_CAROLIEiJ_G0024413) #11	Cst11 (MGP_CAROLIEiJ_G0024412) #12	Cstl1 (MGP_CAROLIEiJ_G0024411) #13	Napb (MGP_CAROLIEiJ_G0024410) #14	Gzf1 (MGP_CAROLIEiJ_G0024409) #15	Nxt1 (MGP_CAROLIEiJ_G0024408) #16	Cd93 (MGP_CAROLIEiJ_G0024407) #17	Thbd (MGP_CAROLIEiJ_G0024406) #18	Sstr4 (MGP_CAROLIEiJ_G0024405) #19	Foxa2 (MGP_CAROLIEiJ_G0024404) #20	Pax1 (MGP_CAROLIEiJ_G0024403) #21	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #22	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #23	Xrn2 (MGP_CAROLIEiJ_G0024400) #24	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398) #25	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #27	Insm1 (MGP_CAROLIEiJ_G0024396) #28	Cfap61 (MGP_CAROLIEiJ_G0024395) #29	Crnkl1 (MGP_CAROLIEiJ_G0024394) #30	Naa20 (MGP_CAROLIEiJ_G0024393) #31	Rin2 (MGP_CAROLIEiJ_G0024392) #32	MGP_CAROLIEiJ_G0024391 #33	Scp2d1 (MGP_CAROLIEiJ_G0024390) #34	Dtd1 (MGP_CAROLIEiJ_G0024389) #35	Smim26 (MGP_CAROLIEiJ_G0024388) #36	Sec23b (MGP_CAROLIEiJ_G0024387) #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c.c #37
Mouse	MODERN SPECIES	11	Cst9 (ENSMUSG00000027445) #7	Cst13 (ENSMUSG00000036924) #8	Cst8 (ENSMUSG00000027442) #9	Cst12 (ENSMUSG00000027443) #10	Cstdc1 (ENSMUSG00000027444) #11	Cst11 (ENSMUSG00000036958) #12	Cstl1 (ENSMUSG00000055177) #13	Napb (ENSMUSG00000027438) #14	Gzf1 (ENSMUSG00000027439) #15	Nxt1 (ENSMUSG00000036992) #16	Cd93 (ENSMUSG00000027435) #17	Thbd (ENSMUSG00000074743) #18	Sstr4 (ENSMUSG00000037014) #19	Foxa2 (ENSMUSG00000037025) #20	Pax1 (ENSMUSG00000037034) #21	Nkx2-2 (ENSMUSG00000027434) #22	Nkx2-4 (ENSMUSG00000054160) #23	Xrn2 (ENSMUSG00000027433) #24	Kiz (ENSMUSG00000074749) #25	Ralgapa2 (ENSMUSG00000037110) #27	Insm1 (ENSMUSG00000068154) #28	Cfap61 (ENSMUSG00000037143) #29	Crnkl1 (ENSMUSG00000001767) #30	Naa20 (ENSMUSG00000002728) #31	Rin2 (ENSMUSG00000001768) #32	Slc24a3 (ENSMUSG00000063873) #33	Scp2d1 (ENSMUSG00000027431) #34	Dtd1 (ENSMUSG00000027430) #35	Smim26 (ENSMUSG00000074754) #36	Sec23b (ENSMUSG00000027429) #37	Rbbp9 (ENSMUSG00000027428)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c.c #37	ENSGT00390000014861
spretus	MODERN SPECIES	11	Cst9 (MGP_SPRETEiJ_G0025335) #7	Cst13 (MGP_SPRETEiJ_G0025334) #8	Cst8 (MGP_SPRETEiJ_G0025333) #9	Cst12 (MGP_SPRETEiJ_G0025332) #10	Cstdc1 (MGP_SPRETEiJ_G0025331) #11	Cst11 (MGP_SPRETEiJ_G0025330) #12	Cstl1 (MGP_SPRETEiJ_G0025329) #13	Napb (MGP_SPRETEiJ_G0025328) #14	Gzf1 (MGP_SPRETEiJ_G0025327) #15	Nxt1 (MGP_SPRETEiJ_G0025326) #16	Cd93 (MGP_SPRETEiJ_G0025325) #17	Thbd (MGP_SPRETEiJ_G0025324) #18	Sstr4 (MGP_SPRETEiJ_G0025323) #19	Foxa2 (MGP_SPRETEiJ_G0025322) #20	Pax1 (MGP_SPRETEiJ_G0025321) #21	Nkx2-2 (MGP_SPRETEiJ_G0025320) #22	Nkx2-4 (MGP_SPRETEiJ_G0025319) #23	Xrn2 (MGP_SPRETEiJ_G0025318) #24	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316) #25	Ralgapa2 (MGP_SPRETEiJ_G0025315) #27	Insm1 (MGP_SPRETEiJ_G0025314) #28	Cfap61 (MGP_SPRETEiJ_G0025313) #29	Crnkl1 (MGP_SPRETEiJ_G0025312) #30	Naa20 (MGP_SPRETEiJ_G0025311) #31	Rin2 (MGP_SPRETEiJ_G0025310) #32	Slc24a3 (MGP_SPRETEiJ_G0025309) #33	Dtd1 (MGP_SPRETEiJ_G0025308) #35	Smim26 (MGP_SPRETEiJ_G0025307) #36	Sec23b (MGP_SPRETEiJ_G0025306) #37	Rbbp9 (MGP_SPRETEiJ_G0025305)
Steppe mouse	MODERN SPECIES	17														Pax1 (ENSMSIG00000015104) #21	ENSMSIG00000015077	ENSMSIG00000015060 #22	Nkx2-4 (ENSMSIG00000015047) #23	Xrn2 (ENSMSIG00000014908) #24	Kiz (ENSMSIG00000014848) #25	Ralgapa2 (ENSMSIG00000014327) #27	ENSMSIG00000014314 #28	Cfap61 (ENSMSIG00000014190) #29	Crnkl1 (ENSMSIG00000014156) #30	Naa20 (ENSMSIG00000014125) #31	Rin2 (ENSMSIG00000014047) #32	ENSMSIG00000014037	Slc24a3 (ENSMSIG00000013851) #33	ENSMSIG00000013826
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001017812 #7	Cst13 (ENSCGRG00001024079) #8	Cst8 (ENSCGRG00001020750) #9	Cst12 (ENSCGRG00001024036) #10	Cstdc1 (ENSCGRG00001024407) #11	Cst11 (ENSCGRG00001004859) #12	Cstl1 (ENSCGRG00001006313) #13	Napb (ENSCGRG00001015884) #14	Gzf1 (ENSCGRG00001003944) #15	ENSCGRG00001007062 #16	Cd93 (ENSCGRG00001016628) #17	Thbd (ENSCGRG00001010215) #18	Sstr4 (ENSCGRG00001010896) #19	Foxa2 (ENSCGRG00001000494) #20	Pax1 (ENSCGRG00001009223) #21	Nkx2-2 (ENSCGRG00001013924) #22	ENSCGRG00001016394	Nkx2-4 (ENSCGRG00001002742) #23	Xrn2 (ENSCGRG00001010676) #24	Kiz (ENSCGRG00001020800) #25	Ralgapa2 (ENSCGRG00001024249) #27	Insm1 (ENSCGRG00001011430) #28	Cfap61 (ENSCGRG00001022702) #29	Slc24a3 (ENSCGRG00001004364) #33	Scp2d1 (ENSCGRG00001008412) #34	Dtd1 (ENSCGRG00001008221) #35	Smim26 (ENSCGRG00001010844) #36	Sec23b (ENSCGRG00001020368) #37	Rbbp9 (ENSCGRG00001022430)	Polr3f (ENSCGRG00001002032)	Dzank1 (ENSCGRG00001019385)
Golden Hamster	MODERN SPECIES	650	Syndig1 (ENSMAUG00000012485)	ENSMAUG00000013001	Cst10 (ENSMAUG00000020427)	Cst3 (ENSMAUG00000012476)	Cstdc2 (ENSMAUG00000014409) ##7	Cst9 (ENSMAUG00000012174) #7	Cst13 (ENSMAUG00000021851) #8	Cst12 (ENSMAUG00000010970) #10	Napb (ENSMAUG00000018004) #14	Gzf1 (ENSMAUG00000019656) #15	Nxt1 (ENSMAUG00000004141) #16	Cd93 (ENSMAUG00000019441) #17	Sstr4 (ENSMAUG00000008430) #19	Foxa2 (ENSMAUG00000016457) #20	Pax1 (ENSMAUG00000019674) #21	Nkx2-2 (ENSMAUG00000004347) #22	Nkx2-4 (ENSMAUG00000013928) #23	Xrn2 (ENSMAUG00000021842) #24	Kiz (ENSMAUG00000012933) #25	Ralgapa2 (ENSMAUG00000000917) #27	Insm1 (ENSMAUG00000008643) #28	Cfap61 (ENSMAUG00000021388) #29	ENSMAUG00000018263	ENSMAUG00000014865	Crnkl1 (ENSMAUG00000020764) #30	Naa20 (ENSMAUG00000016403) #31	Rin2 (ENSMAUG00000010319) #32	Slc24a3 (ENSMAUG00000014182) #33	Scp2d1 (ENSMAUG00000008663) #34	Dtd1 (ENSMAUG00000021240) #35	Smim26 (ENSMAUG00000021093) #36
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000161877.c.a ##7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Northern American deer mouse	MODERN SPECIES	17	Cst13 (ENSPEMG00000005338) #8	Cst8 (ENSPEMG00000030932) #9	Cst12 (ENSPEMG00000000557) #10	Cstdc1 (ENSPEMG00000018705) #11	Cst11 (ENSPEMG00000000143) #12	Cstl1 (ENSPEMG00000015396) #13	Napb (ENSPEMG00000014658) #14	Gzf1 (ENSPEMG00000011285) #15	Nxt1 (ENSPEMG00000010397) #16	Cd93 (ENSPEMG00000009909) #17	Thbd (ENSPEMG00000013258) #18	Sstr4 (ENSPEMG00000013404) #19	Foxa2 (ENSPEMG00000018383) #20	ENSPEMG00000013352	Pax1 (ENSPEMG00000013032) #21	Nkx2-2 (ENSPEMG00000031205) #22	Xrn2 (ENSPEMG00000000111) #24	Kiz (ENSPEMG00000019926) #25	ENSPEMG00000018301	Ralgapa2 (ENSPEMG00000015207) #27	Insm1 (ENSPEMG00000011704) #28	Cfap61 (ENSPEMG00000019999) #29	Crnkl1 (ENSPEMG00000000073) #30	Naa20 (ENSPEMG00000019944) #31	Rin2 (ENSPEMG00000007218) #32	Slc24a3 (ENSPEMG00000019985) #33	ENSPEMG00000027872	Scp2d1 (ENSPEMG00000012681) #34	Dtd1 (ENSPEMG00000019439) #35	Smim26 (ENSPEMG00000025969) #36	Sec23b (ENSPEMG00000019699) #37
Prairie vole	MODERN SPECIES	86	Cst13 (ENSMOCG00000012990) #8	Cst8 (ENSMOCG00000020831) #9	Cst12 (ENSMOCG00000013277) #10	Cstdc1 (ENSMOCG00000015424) #11	Cst11 (ENSMOCG00000016678) #12	Cstl1 (ENSMOCG00000019330) #13	Napb (ENSMOCG00000000502) #14	Gzf1 (ENSMOCG00000017816) #15	Nxt1 (ENSMOCG00000018712) #16	ENSMOCG00000014565	Cd93 (ENSMOCG00000008988) #17	Thbd (ENSMOCG00000004558) #18	Sstr4 (ENSMOCG00000004743) #19	Foxa2 (ENSMOCG00000017025) #20	Pax1 (ENSMOCG00000000474) #21	Nkx2-2 (ENSMOCG00000016851) #22	Nkx2-4 (ENSMOCG00000012451) #23	Xrn2 (ENSMOCG00000012588) #24	Kiz (ENSMOCG00000022509) #25	ENSMOCG00000020632	Ralgapa2 (ENSMOCG00000015663) #27	Insm1 (ENSMOCG00000010418) #28	Cfap61 (ENSMOCG00000001829) #29	ENSMOCG00000000681 #30	ENSMOCG00000021892 #31	Rin2 (ENSMOCG00000011014) #32	Slc24a3 (ENSMOCG00000014059) #33	Scp2d1 (ENSMOCG00000005227) #34	Dtd1 (ENSMOCG00000001062) #35	ENSMOCG00000016611 #36	Sec23b (ENSMOCG00000003908) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	450															Pax1 (ENSNGAG00000011690) #21	Nkx2-2 (ENSNGAG00000015181) #22	Nkx2-4 (ENSNGAG00000009374) #23	Xrn2 (ENSNGAG00000018138) #24	Kiz (ENSNGAG00000013505) #25	ENSNGAG00000015751 #27	ENSNGAG00000011107 #27	Insm1 (ENSNGAG00000020652) #28	Cfap61 (ENSNGAG00000020907) #29	Crnkl1 (ENSNGAG00000023097) #30	Naa20 (ENSNGAG00000014784) #31	Rin2 (ENSNGAG00000009777) #32	Slc24a3 (ENSNGAG00000011154) #33
Lesser Egyptian jerboa	MODERN SPECIES	159		Cst3 (ENSJJAG00000013565)	Cst9 (ENSJJAG00000013510) #7	Cst13 (ENSJJAG00000013369) #8	Cst8 (ENSJJAG00000013212) #9	Cst12 (ENSJJAG00000012500) #10	Cstdc1 (ENSJJAG00000012315) #11	Cstl1 (ENSJJAG00000011653) #13	Napb (ENSJJAG00000010872) #14	Gzf1 (ENSJJAG00000008172) #15	ENSJJAG00000012022 #16	Cd93 (ENSJJAG00000007591) #17	Sstr4 (ENSJJAG00000023336) #19	Foxa2 (ENSJJAG00000023228) #20	Pax1 (ENSJJAG00000023177) #21	Nkx2-2 (ENSJJAG00000022426) #22	Nkx2-4 (ENSJJAG00000022335) #23	Xrn2 (ENSJJAG00000022128) #24	Kiz (ENSJJAG00000021546) #25	ENSJJAG00000020834	ENSJJAG00000020710 #27	ENSJJAG00000020467 #27	Insm1 (ENSJJAG00000020276) #28	Cfap61 (ENSJJAG00000018922) #29	Crnkl1 (ENSJJAG00000016926) #30	Naa20 (ENSJJAG00000016004) #31	ENSJJAG00000015745 #32	Slc24a3 (ENSJJAG00000015385) #33	Dtd1 (ENSJJAG00000014379) #35	Sec23b (ENSJJAG00000018722) #37	Rbbp9 (ENSJJAG00000017816)
Kangaroo rat	MODERN SPECIES	418	Apmap (ENSDORG00000025391)	Cst7 (ENSDORG00000005298)	Syndig1 (ENSDORG00000003111)	ENSDORG00000008948	Cst3 (ENSDORG00000027673)	Cst13 (ENSDORG00000027228) #8	Cst8 (ENSDORG00000011859) #9	Cst12 (ENSDORG00000023744) #10	Napb (ENSDORG00000011856) #14	Gzf1 (ENSDORG00000011855) #15	Nxt1 (ENSDORG00000024690) #16	Cd93 (ENSDORG00000028704) #17	Sstr4 (ENSDORG00000010486) #19	Foxa2 (ENSDORG00000027269) #20	Pax1 (ENSDORG00000016051) #21	Nkx2-2 (ENSDORG00000007972) #22	Nkx2-4 (ENSDORG00000023542) #23	Xrn2 (ENSDORG00000005434) #24	ENSDORG00000024554 #27	ENSDORG00000025962 #27	Insm1 (ENSDORG00000009864) #28	ENSDORG00000000395	ENSDORG00000029623 #29	ENSDORG00000024717 #29	ENSDORG00000000394 #30	Naa20 (ENSDORG00000028339) #31	Rin2 (ENSDORG00000000392) #32	Slc24a3 (ENSDORG00000008187) #33	Scp2d1 (ENSDORG00000002960) #34	Dtd1 (ENSDORG00000006940) #35	Sec23b (ENSDORG00000014203) #37
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000161877.c.a ##7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000161877.c.a ##7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000161877.c.a ##7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00390000007696.e.a.a.a	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Marmotini_b	ANCESTRAL SPECIES	140	ENSGT00940000161877.c.a ##7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00390000007696.e.a.a.a
Squirrel	MODERN SPECIES	220	ENSSTOG00000004129 #8	ENSSTOG00000020102	CST8 (ENSSTOG00000004122) #9	ENSSTOG00000024532 #10	ENSSTOG00000021841 #11	CST11 (ENSSTOG00000004847) #12	CSTL1 (ENSSTOG00000024563) #13	NAPB (ENSSTOG00000022350) #14	ENSSTOG00000030626	GZF1 (ENSSTOG00000009820) #15	NXT1 (ENSSTOG00000026331) #16	CD93 (ENSSTOG00000024530) #17	SSTR4 (ENSSTOG00000021697) #19	FOXA2 (ENSSTOG00000020150) #20	PAX1 (ENSSTOG00000003000) #21	NKX2-2 (ENSSTOG00000021450) #22	XRN2 (ENSSTOG00000000589) #24	KIZ (ENSSTOG00000007449) #25
Arctic ground squirrel	MODERN SPECIES	114	CST11 (ENSUPAG00010009858) #12	CSTL1 (ENSUPAG00010009856) #13	ENSUPAG00010009855	ENSUPAG00010009850	NAPB (ENSUPAG00010009788) #14	GZF1 (ENSUPAG00010009780) #15	NXT1 (ENSUPAG00010009776) #16	ENSUPAG00010009772	ENSUPAG00010009759	CD93 (ENSUPAG00010009758) #17	THBD (ENSUPAG00010009753) #18	SSTR4 (ENSUPAG00010009751) #19	FOXA2 (ENSUPAG00010009738) #20	ENSUPAG00010009726	PAX1 (ENSUPAG00010009718) #21	NKX2-2 (ENSUPAG00010009710) #22	NKX2-4 (ENSUPAG00010009706) #23	XRN2 (ENSUPAG00010009667) #24	KIZ (ENSUPAG00010009237) #25	ENSUPAG00010009220
Alpin marmot	MODERN SPECIES		CST8 (ENSMMMG00000004504) #9	ENSMMMG00000004491 #10	ENSMMMG00000004483 #11	CST11 (ENSMMMG00000004467) #12	CSTL1 (ENSMMMG00000004456) #13	ENSMMMG00000004433	NAPB (ENSMMMG00000004419) #14	GZF1 (ENSMMMG00000004407) #15	NXT1 (ENSMMMG00000004405) #16	ENSMMMG00000004398	CD93 (ENSMMMG00000004395) #17	THBD (ENSMMMG00000004391) #18	SSTR4 (ENSMMMG00000004385) #19	FOXA2 (ENSMMMG00000004350) #20	PAX1 (ENSMMMG00000004326) #21	NKX2-2 (ENSMMMG00000004284) #22	XRN2 (ENSMMMG00000004161) #24	KIZ (ENSMMMG00000003881) #25	ENSMMMG00000003871	RALGAPA2 (ENSMMMG00000003453) #27	ENSMMMG00000003417	ENSMMMG00000003408 #29	ENSMMMG00000003290 #29	CRNKL1 (ENSMMMG00000003244) #30	NAA20 (ENSMMMG00000003240) #31	RIN2 (ENSMMMG00000003172) #32	SLC24A3 (ENSMMMG00000003105) #33	SCP2D1 (ENSMMMG00000003079) #34	ENSMMMG00000003073	DTD1 (ENSMMMG00000003060) #35	SMIM26 (ENSMMMG00000003045) #36
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005000133 #10	ENSSVLG00005000139 #11	CST11 (ENSSVLG00005000162) #12	CSTL1 (ENSSVLG00005000168) #13	NAPB (ENSSVLG00005000227) #14	GZF1 (ENSSVLG00005000288) #15	ENSSVLG00005000304 #16	ENSSVLG00005000317 #16	CD93 (ENSSVLG00005000330) #17	THBD (ENSSVLG00005000349) #18	SSTR4 (ENSSVLG00005000359) #19	ENSSVLG00005000368	FOXA2 (ENSSVLG00005000389) #20	ENSSVLG00005000403	PAX1 (ENSSVLG00005000421) #21	NKX2-2 (ENSSVLG00005000441) #22	NKX2-4 (ENSSVLG00005000455) #23	XRN2 (ENSSVLG00005000470) #24	KIZ (ENSSVLG00005000513) #25	ENSSVLG00005000546	RALGAPA2 (ENSSVLG00005000611) #27	INSM1 (ENSSVLG00005000689) #28	CFAP61 (ENSSVLG00005000731) #29	ENSSVLG00005000777	CRNKL1 (ENSSVLG00005000792) #30	NAA20 (ENSSVLG00005000837) #31	RIN2 (ENSSVLG00005000879) #32	SLC24A3 (ENSSVLG00005000927) #33	SCP2D1 (ENSSVLG00005000950) #34	DTD1 (ENSSVLG00005000962) #35	ENSSVLG00005000978
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000154755.c.b	ENSGT00940000154755.c.a	ENSGT00940000161877.d ##7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987.n.a #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861	ENSGT00390000009679
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000154755.c.b.d	ENSGT00940000154755.c.a	ENSGT00940000161877.d ##7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987.n.a #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861	ENSGT00390000009679
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000154755.c.b.c	ENSGT00940000154755.c.b.d	ENSGT00940000154755.c.a	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987.n.a #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861	ENSGT00390000009679
Long-tailed chinchilla	MODERN SPECIES	122	SYNDIG1 (ENSCLAG00000012586)	ENSCLAG00000012454	ENSCLAG00000015899	ENSCLAG00000017066 #8	ENSCLAG00000015212 #9	ENSCLAG00000015474 #10	ENSCLAG00000011384 #12	CSTL1 (ENSCLAG00000012446) #13	NAPB (ENSCLAG00000011540) #14	GZF1 (ENSCLAG00000014714) #15	NXT1 (ENSCLAG00000012493) #16	CD93 (ENSCLAG00000012062) #17	THBD (ENSCLAG00000011994) #18	FOXA2 (ENSCLAG00000014548) #20	PAX1 (ENSCLAG00000016362) #21	NKX2-2 (ENSCLAG00000016430) #22	XRN2 (ENSCLAG00000013419) #24	KIZ (ENSCLAG00000012565) #25	RALGAPA2 (ENSCLAG00000012502) #27	CFAP61 (ENSCLAG00000014155) #29	CRNKL1 (ENSCLAG00000013859) #30	NAA20 (ENSCLAG00000014313) #31	RIN2 (ENSCLAG00000015234) #32	SLC24A3 (ENSCLAG00000015547) #33	DTD1 (ENSCLAG00000015302) #35	SEC23B (ENSCLAG00000014924) #37	RBBP9 (ENSCLAG00000014851)	POLR3F (ENSCLAG00000016296)	DZANK1 (ENSCLAG00000013160)	ZNF133 (ENSCLAG00000015115)	KAT14 (ENSCLAG00000012590)
Degu	MODERN SPECIES	114	CST3 (ENSODEG00000012334)	ENSODEG00000010611 #8	ENSODEG00000010448 #9	ENSODEG00000012595 #10	CST11 (ENSODEG00000013274) #12	CSTL1 (ENSODEG00000010719) #13	NAPB (ENSODEG00000011065) #14	GZF1 (ENSODEG00000013020) #15	NXT1 (ENSODEG00000019900) #16	CD93 (ENSODEG00000012518) #17	THBD (ENSODEG00000010709) #18	FOXA2 (ENSODEG00000011162) #20	PAX1 (ENSODEG00000012427) #21	ENSODEG00000019878	ENSODEG00000019885	NKX2-2 (ENSODEG00000012371) #22	ENSODEG00000012687	NKX2-4 (ENSODEG00000010842) #23	ENSODEG00000010745 #24	ENSODEG00000011188	KIZ (ENSODEG00000011491) #25	RALGAPA2 (ENSODEG00000011023) #27	INSM1 (ENSODEG00000020028) #28	ENSODEG00000011346	ENSODEG00000012124 #29	ENSODEG00000012675 #29	CRNKL1 (ENSODEG00000012175) #30	NAA20 (ENSODEG00000011704) #31	RIN2 (ENSODEG00000012000) #32	SLC24A3 (ENSODEG00000012016) #33	DTD1 (ENSODEG00000012785) #35
Guinea pig	MODERN SPECIES	8	ENSCPOG00000030984	ENSCPOG00000030716	ENSCPOG00000025294 ##7	ENSCPOG00000021926 #8	CST8 (ENSCPOG00000005550) #9	ENSCPOG00000025993 #10	ENSCPOG00000003822 #12	CSTL1 (ENSCPOG00000008734) #13	NAPB (ENSCPOG00000039063) #14	GZF1 (ENSCPOG00000010790) #15	NXT1 (ENSCPOG00000008817) #16	CD93 (ENSCPOG00000010252) #17	THBD (ENSCPOG00000030575) #18	FOXA2 (ENSCPOG00000033370) #20	PAX1 (ENSCPOG00000002886) #21	NKX2-2 (ENSCPOG00000000408) #22	XRN2 (ENSCPOG00000009407) #24	KIZ (ENSCPOG00000005683) #25	RALGAPA2 (ENSCPOG00000001602) #27	ENSCPOG00000038064	ENSCPOG00000039658 #29	ENSCPOG00000001594 #29	CRNKL1 (ENSCPOG00000004418) #30	NAA20 (ENSCPOG00000001593) #31	RIN2 (ENSCPOG00000013179) #32	SLC24A3 (ENSCPOG00000011970) #33	DTD1 (ENSCPOG00000002416) #35	SEC23B (ENSCPOG00000002406) #37	RBBP9 (ENSCPOG00000036556)	POLR3F (ENSCPOG00000002400)	DZANK1 (ENSCPOG00000002397)
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000044421	ENSHGLG00000048121	ENSHGLG00000014789	ENSHGLG00000016940	ENSHGLG00000017168 ##7	ENSHGLG00000011435 #8	CST8 (ENSHGLG00000011126) #9	ENSHGLG00000009572 #10	CST11 (ENSHGLG00000009307) #12	CSTL1 (ENSHGLG00000016858) #13	NAPB (ENSHGLG00000016842) #14	ENSHGLG00000037985 #15	ENSHGLG00000043445	FOXA2 (ENSHGLG00000048805) #20	PAX1 (ENSHGLG00000015866) #21	NKX2-2 (ENSHGLG00000048629) #22	NKX2-4 (ENSHGLG00000008824) #23	XRN2 (ENSHGLG00000014831) #24	KIZ (ENSHGLG00000014057) #25	ENSHGLG00000037468	ENSHGLG00000016477 #27	ENSHGLG00000047697	ENSHGLG00000013572 #29	ENSHGLG00000035992	ENSHGLG00000001178	ENSHGLG00000049828	ENSHGLG00000001156	CST7 (ENSHGLG00000001075)	APMAP (ENSHGLG00000045360)	ENSHGLG00000042834	ENSHGLG00000034236
Lagomorpha	ANCESTRAL SPECIES	57				ENSGT00940000154755.c.a	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.B #11	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861	ENSGT00390000009679	ENSGT00390000000549	ENSGT00940000162260
Rabbit	MODERN SPECIES	15	ENSOCUG00000021033 #7	ENSOCUG00000024585 #7	ENSOCUG00000029526 #7	ENSOCUG00000026263 #8	CST8 (ENSOCUG00000024979) #9	ENSOCUG00000027150 #11	CSTL1 (ENSOCUG00000024430) #13	ENSOCUG00000025538	NAPB (ENSOCUG00000009263) #14	ENSOCUG00000025214 #15	NXT1 (ENSOCUG00000025924) #16	ENSOCUG00000024138	CD93 (ENSOCUG00000014812) #17	FOXA2 (ENSOCUG00000007368) #20	PAX1 (ENSOCUG00000003276) #21	NKX2-2 (ENSOCUG00000007166) #22	ENSOCUG00000024195	XRN2 (ENSOCUG00000013468) #24	KIZ (ENSOCUG00000013848) #25	RALGAPA2 (ENSOCUG00000017951) #27	CFAP61 (ENSOCUG00000015506) #29	CRNKL1 (ENSOCUG00000015484) #30	NAA20 (ENSOCUG00000015481) #31	RIN2 (ENSOCUG00000015450) #32	SLC24A3 (ENSOCUG00000009833) #33	ENSOCUG00000035674	SCP2D1 (ENSOCUG00000010991) #34	DTD1 (ENSOCUG00000010988) #35	ENSOCUG00000037347	SEC23B (ENSOCUG00000015079) #37	ENSOCUG00000027382
Tree shrew	MODERN SPECIES	9962																NKX2-2 (ENSTBEG00000015943) #22
Primates	ANCESTRAL SPECIES	17	ENSGT00940000154755.c.a	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000154755.c.a	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000164098	ENSGT00940000162294 #9	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c.b #37	ENSGT00390000014861	ENSGT00390000009679
Mouse lemur	MODERN SPECIES	9	CST7 (ENSMICG00000002037)	SYNDIG1 (ENSMICG00000027578)	ENSMICG00000032368	ENSMICG00000043235	ENSMICG00000004617	CST9 (ENSMICG00000047052)	CST8 (ENSMICG00000017905) #9	CST11 (ENSMICG00000017904) #12	CSTL1 (ENSMICG00000017903) #13	NAPB (ENSMICG00000017902) #14	GZF1 (ENSMICG00000046070) #15	NXT1 (ENSMICG00000044853) #16	CD93 (ENSMICG00000017898) #17	FOXA2 (ENSMICG00000030588) #20	PAX1 (ENSMICG00000016968) #21	NKX2-2 (ENSMICG00000045009) #22	NKX2-4 (ENSMICG00000032695) #23	XRN2 (ENSMICG00000008126) #24	KIZ (ENSMICG00000008114) #25	RALGAPA2 (ENSMICG00000006077) #27	INSM1 (ENSMICG00000037992) #28	CFAP61 (ENSMICG00000006057) #29	CRNKL1 (ENSMICG00000006048) #30	ENSMICG00000006044 #31	RIN2 (ENSMICG00000006035) #32	SLC24A3 (ENSMICG00000006014) #33	DTD1 (ENSMICG00000010771) #35	ENSMICG00000010750 #37	ENSMICG00000042283 #37	RBBP9 (ENSMICG00000047808)	POLR3F (ENSMICG00000044519)
Lemuriformes_a	ANCESTRAL SPECIES	137	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000164098	ENSGT00940000162294 #9	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c.b #37	ENSGT00390000014861	ENSGT00390000009679
Greater bamboo lemur	MODERN SPECIES	878		ENSPSMG00000008949 #7	ENSPSMG00000008941 #8	CST8 (ENSPSMG00000008931) #9	ENSPSMG00000008923 #11	CST11 (ENSPSMG00000008919) #12	CSTL1 (ENSPSMG00000008917) #13	NAPB (ENSPSMG00000008819) #14	GZF1 (ENSPSMG00000008681) #15	NXT1 (ENSPSMG00000008668) #16	CD93 (ENSPSMG00000008660) #17	THBD (ENSPSMG00000008649) #18	SSTR4 (ENSPSMG00000008634) #19	FOXA2 (ENSPSMG00000008622) #20	PAX1 (ENSPSMG00000008610) #21	NKX2-2 (ENSPSMG00000008596) #22	NKX2-4 (ENSPSMG00000008590) #23	XRN2 (ENSPSMG00000008572) #24	KIZ (ENSPSMG00000008514) #25	ENSPSMG00000008491	RALGAPA2 (ENSPSMG00000008474) #27	INSM1 (ENSPSMG00000008427) #28
Coquerels sifaka	MODERN SPECIES	560			ENSPCOG00000018222	ENSPCOG00000001285	CST3 (ENSPCOG00000027602)	CST9L (ENSPCOG00000008034) #7	CST8 (ENSPCOG00000017881) #9	CST11 (ENSPCOG00000025724) #12	CSTL1 (ENSPCOG00000016553) #13	NAPB (ENSPCOG00000022495) #14	GZF1 (ENSPCOG00000024180) #15	NXT1 (ENSPCOG00000025624) #16	CD93 (ENSPCOG00000022300) #17	FOXA2 (ENSPCOG00000001633) #20	PAX1 (ENSPCOG00000027636) #21	NKX2-2 (ENSPCOG00000016151) #22
Bushbaby	MODERN SPECIES	251							NAPB (ENSOGAG00000012607) #14	GZF1 (ENSOGAG00000028389) #15	NXT1 (ENSOGAG00000000717) #16	CD93 (ENSOGAG00000017109) #17	THBD (ENSOGAG00000026061) #18	SSTR4 (ENSOGAG00000017105) #19	ENSOGAG00000025509	FOXA2 (ENSOGAG00000033297) #20	PAX1 (ENSOGAG00000033162) #21	NKX2-2 (ENSOGAG00000029474) #22	ENSOGAG00000025951	NKX2-4 (ENSOGAG00000024342) #23	XRN2 (ENSOGAG00000001068) #24	KIZ (ENSOGAG00000010591) #25	RALGAPA2 (ENSOGAG00000011557) #27	INSM1 (ENSOGAG00000034802) #28	ENSOGAG00000031837	CFAP61 (ENSOGAG00000011546) #29	CRNKL1 (ENSOGAG00000011544) #30	NAA20 (ENSOGAG00000011542) #31	RIN2 (ENSOGAG00000011531) #32	SLC24A3 (ENSOGAG00000026410) #33	SCP2D1 (ENSOGAG00000004222) #34	DTD1 (ENSOGAG00000007972) #35	ENSOGAG00000031912 #36
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00940000164098	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Tarsier	MODERN SPECIES	6553																NKX2-2 (ENSTSYG00000035825) #22
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000164098	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000164098	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861.a	ENSGT00390000009679	ENSGT00390000000549
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000164098	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861.a	ENSGT00390000009679	ENSGT00390000000549
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	17	CST8 (ENSCJAG00000000697) #9	ENSCJAG00000074097 #10	CST11 (ENSCJAG00000080392) #12	CSTL1 (ENSCJAG00000041540) #13	NAPB (ENSCJAG00000000712) #14	GZF1 (ENSCJAG00000000733) #15	NXT1 (ENSCJAG00000044836) #16	CD93 (ENSCJAG00000005796) #17	THBD (ENSCJAG00000005795) #18	FOXA2 (ENSCJAG00000005785) #20	ENSCJAG00000070048	ENSCJAG00000075555	PAX1 (ENSCJAG00000005773) #21	ENSCJAG00000070559	ENSCJAG00000076879	ENSCJAG00000051781 #22	ENSCJAG00000081459	NKX2-4 (ENSCJAG00000040336) #23	XRN2 (ENSCJAG00000005611) #24	KIZ (ENSCJAG00000005568) #25	RALGAPA2 (ENSCJAG00000005471) #27	INSM1 (ENSCJAG00000040556) #28	CFAP61 (ENSCJAG00000005444) #29	CRNKL1 (ENSCJAG00000005393) #30	ENSCJAG00000005377 #31	RIN2 (ENSCJAG00000005342) #32	SLC24A3 (ENSCJAG00000005325) #33	DTD1 (ENSCJAG00000005306) #35	ENSCJAG00000086632	SEC23B (ENSCJAG00000005179) #37	RBBP9 (ENSCJAG00000005170)
Marmoset	MODERN SPECIES		ENSCJAG00000035362	SPIN1 (ENSCJAG00000038940)	NXNL2 (ENSCJAG00000040941)	ENSCJAG00000045436	S1PR3 (ENSCJAG00000045198)	SHC3 (ENSCJAG00000011207)	CKS2 (ENSCJAG00000082907)	SECISBP2 (ENSCJAG00000007806)	SEMA4D (ENSCJAG00000007883)	GADD45G (ENSCJAG00000075792)	ENSCJAG00000086138	ENSCJAG00000073981	NFIL3 (ENSCJAG00000005728)	ENSCJAG00000005695	SYK (ENSCJAG00000005666)	ENSCJAG00000062354 #22	DIRAS2 (ENSCJAG00000039042)	ENSCJAG00000051243	ENSCJAG00000072229	ENSCJAG00000005635	DAPK1 (ENSCJAG00000005569)	ENSCJAG00000074564	GAS1 (ENSCJAG00000062210)	ENSCJAG00000084670	ZNF484 (ENSCJAG00000005536)	PRXL2C (ENSCJAG00000076685)	ENSCJAG00000061833	ENSCJAG00000012598	HABP4 (ENSCJAG00000012589)	ENSCJAG00000040778	SLC35D2 (ENSCJAG00000012556)
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00940000154755.d	ENSGT00940000164098	ENSGT00940000161877 #7	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861.a	ENSGT00390000009679	ENSGT00390000000549
Bolivian squirrel monkey	MODERN SPECIES	96															PAX1 (ENSSBOG00000032573) #21	NKX2-2 (ENSSBOG00000032080) #22	XRN2 (ENSSBOG00000021014) #24	KIZ (ENSSBOG00000032917) #25	RALGAPA2 (ENSSBOG00000005301) #27	CFAP61 (ENSSBOG00000031606) #29	CRNKL1 (ENSSBOG00000029672) #30	NAA20 (ENSSBOG00000005179) #31	RIN2 (ENSSBOG00000028798) #32	SLC24A3 (ENSSBOG00000030521) #33	DTD1 (ENSSBOG00000025961) #35	SEC23B (ENSSBOG00000020929) #37	RBBP9 (ENSSBOG00000020458)	POLR3F (ENSSBOG00000018207)	DZANK1 (ENSSBOG00000030675)	ENSSBOG00000028652	ZNF133 (ENSSBOG00000025399)
Capuchin	MODERN SPECIES	134	CST3 (ENSCCAG00000001843)	CST9 (ENSCCAG00000024829)	CST9L (ENSCCAG00000026509) #7	CST8 (ENSCCAG00000024862) #9	ENSCCAG00000037786 #10	CST11 (ENSCCAG00000035766) #12	CSTL1 (ENSCCAG00000033212) #13	NAPB (ENSCCAG00000029344) #14	GZF1 (ENSCCAG00000035601) #15	NXT1 (ENSCCAG00000015478) #16	CD93 (ENSCCAG00000034013) #17	THBD (ENSCCAG00000020711) #18	SSTR4 (ENSCCAG00000019059) #19	FOXA2 (ENSCCAG00000027576) #20	PAX1 (ENSCCAG00000025569) #21	NKX2-2 (ENSCCAG00000035862) #22	NKX2-4 (ENSCCAG00000032197) #23	ENSCCAG00000036857 #24	KIZ (ENSCCAG00000031682) #25	RALGAPA2 (ENSCCAG00000028362) #27	INSM1 (ENSCCAG00000023181) #28	CFAP61 (ENSCCAG00000026777) #29	CRNKL1 (ENSCCAG00000027037) #30	NAA20 (ENSCCAG00000028274) #31
Mas night monkey	MODERN SPECIES	720												CD93 (ENSANAG00000031974) #17	SSTR4 (ENSANAG00000031033) #19	FOXA2 (ENSANAG00000000151) #20	PAX1 (ENSANAG00000031911) #21	NKX2-2 (ENSANAG00000031496) #22	NKX2-4 (ENSANAG00000025954) #23	XRN2 (ENSANAG00000020126) #24	KIZ (ENSANAG00000030324) #25	RALGAPA2 (ENSANAG00000035297) #27	ENSANAG00000025204	INSM1 (ENSANAG00000021754) #28	ENSANAG00000026688 #29	ENSANAG00000033104 #29	ENSANAG00000023984	CRNKL1 (ENSANAG00000024889) #30	ENSANAG00000021111 #31	RIN2 (ENSANAG00000033313) #32	SLC24A3 (ENSANAG00000022086) #33
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000161877 #7	ENSGT00940000166721	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000013102.e.a.n
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000161877 #7	ENSGT00940000166721	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000013102.e.a.n
Hominidae	ANCESTRAL SPECIES	18	ENSGT00940000166721	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000013102.e.a.n
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041.g #16	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00910000148254	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00910000147760	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041.g #16	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00910000148254	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00910000147760	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Pan	ANCESTRAL SPECIES	15	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041.g #16	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00910000148254	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00910000147760	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000013102.e.a.n.m.a
Bonobo	MODERN SPECIES	11	CST8 (ENSPPAG00000037606) #9	ENSPPAG00000034245 #10	CST11 (ENSPPAG00000025372) #12	CSTL1 (ENSPPAG00000038564) #13	NAPB (ENSPPAG00000043876) #14	GZF1 (ENSPPAG00000028487) #15	NXT1 (ENSPPAG00000020479) #16	ENSPPAG00000024534	CD93 (ENSPPAG00000040099) #17	THBD (ENSPPAG00000018179) #18	SSTR4 (ENSPPAG00000036986) #19	ENSPPAG00000031368 #20	ENSPPAG00000024066	ENSPPAG00000043307	PAX1 (ENSPPAG00000035911) #21	NKX2-2 (ENSPPAG00000039042) #22	ENSPPAG00000037349	XRN2 (ENSPPAG00000033549) #24	KIZ (ENSPPAG00000031020) #25	RALGAPA2 (ENSPPAG00000039422) #27	ENSPPAG00000036172 #29	CRNKL1 (ENSPPAG00000027847) #30	NAA20 (ENSPPAG00000016439) #31	RIN2 (ENSPPAG00000037433) #32	ENSPPAG00000035002	SLC24A3 (ENSPPAG00000032340) #33	SCP2D1 (ENSPPAG00000033243) #34	ENSPPAG00000030919	DTD1 (ENSPPAG00000030006) #35	SEC23B (ENSPPAG00000021097) #37	ENSPPAG00000041345
Chimpanzee	MODERN SPECIES	11	CST8 (ENSPTRG00000013324) #9	ENSPTRG00000045117 #10	CST11 (ENSPTRG00000013323) #12	CSTL1 (ENSPTRG00000045776) #13	NAPB (ENSPTRG00000013321) #14	GZF1 (ENSPTRG00000013320) #15	NXT1 (ENSPTRG00000013319) #16	ENSPTRG00000046209	CD93 (ENSPTRG00000013318) #17	THBD (ENSPTRG00000013317) #18	SSTR4 (ENSPTRG00000013316) #19	FOXA2 (ENSPTRG00000048023) #20	ENSPTRG00000045139	ENSPTRG00000044291	PAX1 (ENSPTRG00000013311) #21	NKX2-2 (ENSPTRG00000013310) #22	NKX2-4 (ENSPTRG00000013309) #23	ENSPTRG00000047508	XRN2 (ENSPTRG00000013308) #24	ENSPTRG00000044546	KIZ (ENSPTRG00000046348) #25	RALGAPA2 (ENSPTRG00000013306) #27	CFAP61 (ENSPTRG00000013301) #29	CRNKL1 (ENSPTRG00000030609) #30	NAA20 (ENSPTRG00000013299) #31	RIN2 (ENSPTRG00000013298) #32	SLC24A3 (ENSPTRG00000013294) #33	SCP2D1 (ENSPTRG00000013293) #34	ENSPTRG00000048655	DTD1 (ENSPTRG00000013291) #35	SEC23B (ENSPTRG00000013290) #37
Human	MODERN SPECIES	12	CST4 (ENSG00000101441)	CST3 (ENSG00000101439)	CST9 (ENSG00000173335)	CST9L (ENSG00000101435) #7	CST8 (ENSG00000125815) #9	CST11 (ENSG00000125831) #12	CSTL1 (ENSG00000125823) #13	NAPB (ENSG00000125814) #14	GZF1 (ENSG00000125812) #15	NXT1 (ENSG00000132661) #16	CD93 (ENSG00000125810) #17	THBD (ENSG00000178726) #18	SSTR4 (ENSG00000132671) #19	FOXA2 (ENSG00000125798) #20	PAX1 (ENSG00000125813) #21	NKX2-2 (ENSG00000125820) #22	NKX2-4 (ENSG00000125816) #23	XRN2 (ENSG00000088930) #24	KIZ (ENSG00000088970) #25	RALGAPA2 (ENSG00000188559) #27	INSM1 (ENSG00000173404) #28	CFAP61 (ENSG00000089101) #29	CRNKL1 (ENSG00000101343) #30	NAA20 (ENSG00000173418) #31	RIN2 (ENSG00000132669) #32	SLC24A3 (ENSG00000185052) #33	SCP2D1 (ENSG00000132631) #34	DTD1 (ENSG00000125821) #35	ENSG00000284776	SMIM26 (ENSG00000232388) #36	SEC23B (ENSG00000101310) #37
Gorilla	MODERN SPECIES	11	CST5 (ENSGGOG00000016581)	CST2 (ENSGGOG00000007675)	CST1 (ENSGGOG00000002786)	CST9 (ENSGGOG00000009518)	CST9L (ENSGGOG00000015132) #7	ENSGGOG00000038343 #8	CST8 (ENSGGOG00000006139) #9	CSTL1 (ENSGGOG00000013172) #13	NAPB (ENSGGOG00000008548) #14	GZF1 (ENSGGOG00000023248) #15	ENSGGOG00000012539 #16	FOXA2 (ENSGGOG00000006368) #20	ENSGGOG00000040550	ENSGGOG00000038211	PAX1 (ENSGGOG00000016075) #21	NKX2-2 (ENSGGOG00000008080) #22	ENSGGOG00000027030 #23	ENSGGOG00000038958	XRN2 (ENSGGOG00000013738) #24	ENSGGOG00000022720	KIZ (ENSGGOG00000002290) #25	RALGAPA2 (ENSGGOG00000006329) #27	CFAP61 (ENSGGOG00000014189) #29	CRNKL1 (ENSGGOG00000014176) #30	NAA20 (ENSGGOG00000004247) #31	RIN2 (ENSGGOG00000016772) #32	SLC24A3 (ENSGGOG00000004364) #33	SCP2D1 (ENSGGOG00000005677) #34	ENSGGOG00000042789	DTD1 (ENSGGOG00000000080) #35	SEC23B (ENSGGOG00000022369) #37
Orangutan	MODERN SPECIES	11	ENSPPYG00000010772	ENSPPYG00000010771 #8	CST8 (ENSPPYG00000010770) #9	ENSPPYG00000037632 #10	CST11 (ENSPPYG00000010769) #12	CSTL1 (ENSPPYG00000010768) #13	NAPB (ENSPPYG00000010767) #14	GZF1 (ENSPPYG00000010766) #15	NXT1 (ENSPPYG00000010765) #16	ENSPPYG00000010764	CD93 (ENSPPYG00000010763) #17	THBD (ENSPPYG00000010762) #18	SSTR4 (ENSPPYG00000010761) #19	FOXA2 (ENSPPYG00000040463) #20	PAX1 (ENSPPYG00000010758) #21	NKX2-2 (ENSPPYG00000010757) #22	NKX2-4 (ENSPPYG00000010756) #23	XRN2 (ENSPPYG00000010755) #24	KIZ (ENSPPYG00000010754) #25	RALGAPA2 (ENSPPYG00000010751) #27	INSM1 (ENSPPYG00000010750) #28	CFAP61 (ENSPPYG00000010748) #29	CRNKL1 (ENSPPYG00000010747) #30	NAA20 (ENSPPYG00000010746) #31	RIN2 (ENSPPYG00000010745) #32	SLC24A3 (ENSPPYG00000010743) #33	SCP2D1 (ENSPPYG00000010741) #34	ENSPPYG00000010740 #35	SMIM26 (ENSPPYG00000033260) #36	SEC23B (ENSPPYG00000010739) #37	RBBP9 (ENSPPYG00000036673)
Gibbon	MODERN SPECIES	3	CST3 (ENSNLEG00000035405)	CST9 (ENSNLEG00000011616)	CST8 (ENSNLEG00000011607) #9	ENSNLEG00000033018 #10	CST11 (ENSNLEG00000011603) #12	CSTL1 (ENSNLEG00000011597) #13	NAPB (ENSNLEG00000027099) #14	GZF1 (ENSNLEG00000011565) #15	ENSNLEG00000033556	CD93 (ENSNLEG00000011559) #17	THBD (ENSNLEG00000011558) #18	SSTR4 (ENSNLEG00000018627) #19	ENSNLEG00000031709	ENSNLEG00000031487 #20	PAX1 (ENSNLEG00000010049) #21	NKX2-2 (ENSNLEG00000010048) #22	ENSNLEG00000010047 #23	XRN2 (ENSNLEG00000009991) #24	KIZ (ENSNLEG00000009954) #25	ENSNLEG00000033115	RALGAPA2 (ENSNLEG00000009931) #27	CFAP61 (ENSNLEG00000009893) #29	ENSNLEG00000009862 #30	NAA20 (ENSNLEG00000028442) #31	RIN2 (ENSNLEG00000009844) #32	ENSNLEG00000035380	SLC24A3 (ENSNLEG00000009831) #33	ENSNLEG00000027860	ENSNLEG00000034887	DTD1 (ENSNLEG00000027109) #35	SEC23B (ENSNLEG00000009798) #37
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00940000161877 #7	ENSGT00940000166721	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b.g.a #35	ENSGT00860000134050 #36	ENSGT00940000153431.b.h #35
Rhinopithecus	ANCESTRAL SPECIES	176			ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000155999 #20	ENSGT00950000183087.A.b.b	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b.h #35	ENSGT00390000006916.c #37	ENSGT00940000164207.g.b	ENSGT00390000014861	ENSGT00390000009679
Black snub-nosed monkey	MODERN SPECIES	2601															PAX1 (ENSRBIG00000042214) #21	NKX2-2 (ENSRBIG00000031086) #22	ENSRBIG00000014103
Golden snub-nosed monkey	MODERN SPECIES	1446				CST8 (ENSRROG00000030761) #9	ENSRROG00000037494 #10	CST11 (ENSRROG00000029851) #12	CSTL1 (ENSRROG00000032535) #13	NAPB (ENSRROG00000044287) #14	GZF1 (ENSRROG00000030533) #15	NXT1 (ENSRROG00000026657) #16	CD93 (ENSRROG00000012087) #17	FOXA2 (ENSRROG00000024272) #20	ENSRROG00000030464	ENSRROG00000040808	PAX1 (ENSRROG00000038854) #21	NKX2-2 (ENSRROG00000041150) #22	NKX2-4 (ENSRROG00000006364) #23	XRN2 (ENSRROG00000044400) #24	ENSRROG00000030791 #25	ENSRROG00000041676	RALGAPA2 (ENSRROG00000037467) #27	CFAP61 (ENSRROG00000040251) #29	CRNKL1 (ENSRROG00000040450) #30	NAA20 (ENSRROG00000036514) #31
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000161877 #7	ENSGT00940000166721	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b.g.a #35	ENSGT00860000134050 #36	ENSGT00940000153431.b.h #35
Vervet Monkey	MODERN SPECIES	11	ENSCSAG00000011001	ENSCSAG00000011012 #7	CST9L (ENSCSAG00000011017) #7	ENSCSAG00000011022	ENSCSAG00000011025	CST3 (ENSCSAG00000011027)	ENSCSAG00000011032	ENSCSAG00000011037	GZF1 (ENSCSAG00000011054) #15	NXT1 (ENSCSAG00000018678) #16	CD93 (ENSCSAG00000011058) #17	THBD (ENSCSAG00000018677) #18	SSTR4 (ENSCSAG00000018676) #19	FOXA2 (ENSCSAG00000011062) #20	PAX1 (ENSCSAG00000011068) #21	NKX2-2 (ENSCSAG00000011072) #22	NKX2-4 (ENSCSAG00000011080) #23	XRN2 (ENSCSAG00000011094) #24	KIZ (ENSCSAG00000011135) #25	RALGAPA2 (ENSCSAG00000011248) #27	INSM1 (ENSCSAG00000018675) #28	CFAP61 (ENSCSAG00000011382) #29	CRNKL1 (ENSCSAG00000011434) #30	NAA20 (ENSCSAG00000011440) #31	RIN2 (ENSCSAG00000011446) #32	ENSCSAG00000011450	SLC24A3 (ENSCSAG00000011456) #33	SCP2D1 (ENSCSAG00000018674) #34	DTD1 (ENSCSAG00000011466) #35	SEC23B (ENSCSAG00000011476) #37	RBBP9 (ENSCSAG00000011497)
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b.g.a #35	ENSGT00860000134050 #36	ENSGT00550000074823.a.i.b
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00940000164098.a.a	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00550000074823.a.i.b	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b.h #35	ENSGT00390000006916.c #37
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00940000154755.d	ENSGT00940000164098.a.a	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #17	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00550000074823.a.i.b	ENSGT00940000153431.b.h #35	ENSGT00390000006916.c #37	ENSGT00390000013102.e.a.n
Drill	MODERN SPECIES	1539															PAX1 (ENSMLEG00000040057) #21	NKX2-2 (ENSMLEG00000016379) #22	XRN2 (ENSMLEG00000041897) #24	KIZ (ENSMLEG00000035970) #25	RALGAPA2 (ENSMLEG00000022293) #27
Sooty mangabey	MODERN SPECIES	602	ENSCATG00000043016	ENSCATG00000033110	CST8 (ENSCATG00000033479) #9	ENSCATG00000043404 #10	CST11 (ENSCATG00000042927) #12	CSTL1 (ENSCATG00000031751) #13	NAPB (ENSCATG00000042262) #14	GZF1 (ENSCATG00000039279) #15	NXT1 (ENSCATG00000019026) #16	ENSCATG00000019258	CD93 (ENSCATG00000009216) #17	SSTR4 (ENSCATG00000019242) #19	FOXA2 (ENSCATG00000033454) #20	ENSCATG00000022190	PAX1 (ENSCATG00000029185) #21	NKX2-2 (ENSCATG00000041599) #22	NKX2-4 (ENSCATG00000023019) #23	XRN2 (ENSCATG00000040350) #24	KIZ (ENSCATG00000042535) #25	ENSCATG00000043761	RALGAPA2 (ENSCATG00000035357) #27	INSM1 (ENSCATG00000037816) #28	CFAP61 (ENSCATG00000043610) #29	CRNKL1 (ENSCATG00000034247) #30	NAA20 (ENSCATG00000027935) #31	RIN2 (ENSCATG00000042503) #32	SLC24A3 (ENSCATG00000034515) #33	ENSCATG00000037045	DTD1 (ENSCATG00000039340) #35	SEC23B (ENSCATG00000026216) #37	ENSCATG00000003757
Olive baboon	MODERN SPECIES	7	ENTPD6 (ENSPANG00000026175)	ENSPANG00000045994	PYGB (ENSPANG00000024585)	ABHD12 (ENSPANG00000001312)	GINS1 (ENSPANG00000032488)	NINL (ENSPANG00000016039)	ENSPANG00000044377	NANP (ENSPANG00000031862)	ENSPANG00000048820	CD93 (ENSPANG00000018432) #17	THBD (ENSPANG00000046781) #18	SSTR4 (ENSPANG00000004090) #19	ENSPANG00000044373	FOXA2 (ENSPANG00000011847) #20	PAX1 (ENSPANG00000008282) #21	ENSPANG00000043988 #22	NKX2-4 (ENSPANG00000014236) #23	XRN2 (ENSPANG00000018088) #24	KIZ (ENSPANG00000025535) #25	ENSPANG00000050604	RALGAPA2 (ENSPANG00000018089) #27	ENSPANG00000046512	CFAP61 (ENSPANG00000024586) #29	ENSPANG00000045223	CRNKL1 (ENSPANG00000017420) #30	NAA20 (ENSPANG00000017143) #31	RIN2 (ENSPANG00000025536) #32	SLC24A3 (ENSPANG00000024113) #33	ENSPANG00000050747	ENSPANG00000030391	ENSPANG00000048696
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b.g.a #35	ENSGT00860000134050 #36	ENSGT00940000153431.b.h #35
Pig-tailed macaque	MODERN SPECIES	130	ENSMNEG00000039062	CST9 (ENSMNEG00000039807)	CST8 (ENSMNEG00000037697) #9	ENSMNEG00000032864 #10	CST11 (ENSMNEG00000041474) #12	CSTL1 (ENSMNEG00000044944) #13	NAPB (ENSMNEG00000036841) #14	GZF1 (ENSMNEG00000033117) #15	NXT1 (ENSMNEG00000027745) #16	ENSMNEG00000024687	CD93 (ENSMNEG00000042460) #17	SSTR4 (ENSMNEG00000038323) #19	FOXA2 (ENSMNEG00000011763) #20	ENSMNEG00000028347	PAX1 (ENSMNEG00000040896) #21	NKX2-2 (ENSMNEG00000045238) #22	NKX2-4 (ENSMNEG00000028280) #23	XRN2 (ENSMNEG00000040626) #24	KIZ (ENSMNEG00000028617) #25	ENSMNEG00000039122	RALGAPA2 (ENSMNEG00000033398) #27	INSM1 (ENSMNEG00000029140) #28	CFAP61 (ENSMNEG00000036910) #29	CRNKL1 (ENSMNEG00000037490) #30	NAA20 (ENSMNEG00000033202) #31	RIN2 (ENSMNEG00000005068) #32	SLC24A3 (ENSMNEG00000029022) #33	ENSMNEG00000043133	ENSMNEG00000040178 #35	SEC23B (ENSMNEG00000030931) #37	ENSMNEG00000028082
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00910000146941	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.b.b.b.a.a.b.a.a.a	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b.g.a #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000061186 #8	CST8 (ENSMFAG00000033001) #9	ENSMFAG00000032810 #10	CST11 (ENSMFAG00000038093) #12	CSTL1 (ENSMFAG00000057818) #13	NAPB (ENSMFAG00000012865) #14	ENSMFAG00000058516	GZF1 (ENSMFAG00000042408) #15	NXT1 (ENSMFAG00000065310) #16	ENSMFAG00000026040	CD93 (ENSMFAG00000043644) #17	SSTR4 (ENSMFAG00000017458) #19	FOXA2 (ENSMFAG00000047214) #20	ENSMFAG00000057184	PAX1 (ENSMFAG00000044435) #21	NKX2-2 (ENSMFAG00000044462) #22	XRN2 (ENSMFAG00000038122) #24	KIZ (ENSMFAG00000036086) #25	RALGAPA2 (ENSMFAG00000039275) #27	CFAP61 (ENSMFAG00000040250) #29	CRNKL1 (ENSMFAG00000039893) #30	RIN2 (ENSMFAG00000002995) #32	ENSMFAG00000065169	SLC24A3 (ENSMFAG00000037051) #33	SCP2D1 (ENSMFAG00000050245) #34	ENSMFAG00000034375 #35	SMIM26 (ENSMFAG00000052911) #36	SEC23B (ENSMFAG00000041652) #37	ENSMFAG00000030191	RBBP9 (ENSMFAG00000058087)	POLR3F (ENSMFAG00000002227)
Rhesus	MODERN SPECIES	1	CST9 (ENSMMUG00000039259)	ENSMMUG00000063687	ENSMMUG00000059402 #8	CST8 (ENSMMUG00000016489) #9	ENSMMUG00000016490 #10	CST11 (ENSMMUG00000022393) #12	CSTL1 (ENSMMUG00000055975) #13	NAPB (ENSMMUG00000022388) #14	GZF1 (ENSMMUG00000022387) #15	NXT1 (ENSMMUG00000022386) #16	CD93 (ENSMMUG00000016813) #17	THBD (ENSMMUG00000016814) #18	SSTR4 (ENSMMUG00000016815) #19	FOXA2 (ENSMMUG00000010410) #20	PAX1 (ENSMMUG00000019409) #21	ENSMMUG00000056728 #22	NKX2-4 (ENSMMUG00000011409) #23	XRN2 (ENSMMUG00000011405) #24	KIZ (ENSMMUG00000002060) #25	RALGAPA2 (ENSMMUG00000018371) #27	INSM1 (ENSMMUG00000039294) #28	CFAP61 (ENSMMUG00000042668) #29	CRNKL1 (ENSMMUG00000007709) #30	NAA20 (ENSMMUG00000007708) #31	RIN2 (ENSMMUG00000010114) #32	ENSMMUG00000051129	SLC24A3 (ENSMMUG00000002321) #33	SCP2D1 (ENSMMUG00000050690) #34	DTD1 (ENSMMUG00000012880) #35	SEC23B (ENSMMUG00000012878) #37	RBBP9 (ENSMMUG00000004146)
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000159727 #22
Hedgehog	MODERN SPECIES	2505																NKX2-2 (ENSEEUG00000000616) #22
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Suina	ANCESTRAL SPECIES	9	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Pig	MODERN SPECIES	8	SYNDIG1 (ENSSSCG00000007130)	CST3 (ENSSSCG00000037360)	CST9L (ENSSSCG00000029289) #7	ENSSSCG00000007125 #8	ENSSSCG00000007124 #9	ENSSSCG00000007123	CST11 (ENSSSCG00000007122) #12	CSTL1 (ENSSSCG00000007121) #13	NAPB (ENSSSCG00000031219) #14	GZF1 (ENSSSCG00000007117) #15	NXT1 (ENSSSCG00000007119) #16	CD93 (ENSSSCG00000007116) #17	THBD (ENSSSCG00000053422) #18	FOXA2 (ENSSSCG00000007114) #20	PAX1 (ENSSSCG00000007112) #21	NKX2-2 (ENSSSCG00000040017) #22	NKX2-4 (ENSSSCG00000007110) #23	XRN2 (ENSSSCG00000007109) #24	KIZ (ENSSSCG00000007108) #25	ENSSSCG00000048962	RALGAPA2 (ENSSSCG00000026506) #27	INSM1 (ENSSSCG00000062159) #28	CFAP61 (ENSSSCG00000038858) #29	CRNKL1 (ENSSSCG00000038587) #30	NAA20 (ENSSSCG00000028132) #31	ENSSSCG00000028004 #32	SLC24A3 (ENSSSCG00000007100) #33	SCP2D1 (ENSSSCG00000007099) #34	DTD1 (ENSSSCG00000007098) #35	SMIM26 (ENSSSCG00000025589) #36	SEC23B (ENSSSCG00000007097) #37
Chacoan peccary	MODERN SPECIES	801	SYNDIG1 (ENSCWAG00000016959)	CST3 (ENSCWAG00000016979)	ENSCWAG00000017004 #7	ENSCWAG00000017060 #8	CST8 (ENSCWAG00000017086) #9	ENSCWAG00000017127	CST11 (ENSCWAG00000017158) #12	CSTL1 (ENSCWAG00000017189) #13	NAPB (ENSCWAG00000017225) #14	GZF1 (ENSCWAG00000017910) #15	NXT1 (ENSCWAG00000017956) #16	CD93 (ENSCWAG00000017965) #17	THBD (ENSCWAG00000017996) #18	FOXA2 (ENSCWAG00000007985) #20	PAX1 (ENSCWAG00000008052) #21	NKX2-2 (ENSCWAG00000008122) #22	NKX2-4 (ENSCWAG00000008162) #23	XRN2 (ENSCWAG00000008201) #24	KIZ (ENSCWAG00000008351) #25	RALGAPA2 (ENSCWAG00000008863) #27	INSM1 (ENSCWAG00000009223) #28	CFAP61 (ENSCWAG00000009261) #29	CRNKL1 (ENSCWAG00000009575) #30	NAA20 (ENSCWAG00000009645) #31	ENSCWAG00000009830 #32	SLC24A3 (ENSCWAG00000009885) #33	SCP2D1 (ENSCWAG00000010002) #34	DTD1 (ENSCWAG00000010021) #35	SMIM26 (ENSCWAG00000010058) #36	SEC23B (ENSCWAG00000010080) #37	RBBP9 (ENSCWAG00000010152)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000154755	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861	ENSGT00390000009679	ENSGT00390000000549
Arabian camel	MODERN SPECIES	10	ENSCDRG00005019533 #7	ENSCDRG00005019539 #7	ENSCDRG00005019553 #8	CST8 (ENSCDRG00005019565) #9	ENSCDRG00005019579	ENSCDRG00005019599 #11	ENSCDRG00005019617 #12	CSTL1 (ENSCDRG00005019624) #13	ENSCDRG00005019640 #14	GZF1 (ENSCDRG00005019674) #15	ENSCDRG00005019685 #16	CD93 (ENSCDRG00005019688) #17	ENSCDRG00005019694	FOXA2 (ENSCDRG00005019700) #20	PAX1 (ENSCDRG00005019717) #21	NKX2-2 (ENSCDRG00005019726) #22	XRN2 (ENSCDRG00005019738) #24	KIZ (ENSCDRG00005019794) #25	ENSCDRG00005020052 #27	ENSCDRG00005020129 #27	CFAP61 (ENSCDRG00005020211) #29	CRNKL1 (ENSCDRG00005020237) #30	NAA20 (ENSCDRG00005020249) #31	RIN2 (ENSCDRG00005020269) #32	SLC24A3 (ENSCDRG00005020283) #33	SCP2D1 (ENSCDRG00005020314) #34	DTD1 (ENSCDRG00005003474) #35	SMIM26 (ENSCDRG00005003504) #36	SEC23B (ENSCDRG00005003558) #37	RBBP9 (ENSCDRG00005003649)	POLR3F (ENSCDRG00005003691)
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000161877.i #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Blue whale	MODERN SPECIES	6	ENSBMSG00010012402 #8	CST8 (ENSBMSG00010012422) #9	ENSBMSG00010012475	ENSBMSG00010012491 #11	CST11 (ENSBMSG00010012502) #12	CSTL1 (ENSBMSG00010012521) #13	NAPB (ENSBMSG00010012544) #14	ENSBMSG00010012568 #15	ENSBMSG00010012580 #15	NXT1 (ENSBMSG00010012589) #16	CD93 (ENSBMSG00010012595) #17	THBD (ENSBMSG00010012612) #18	SSTR4 (ENSBMSG00010013828) #19	FOXA2 (ENSBMSG00010013859) #20	PAX1 (ENSBMSG00010013891) #21	NKX2-2 (ENSBMSG00010013921) #22	NKX2-4 (ENSBMSG00010013938) #23	XRN2 (ENSBMSG00010014058) #24	KIZ (ENSBMSG00010014281) #25	RALGAPA2 (ENSBMSG00010014396) #27	INSM1 (ENSBMSG00010014572) #28	CFAP61 (ENSBMSG00010014638) #29	CRNKL1 (ENSBMSG00010014711) #30	NAA20 (ENSBMSG00010014762) #31	RIN2 (ENSBMSG00010014833) #32	SLC24A3 (ENSBMSG00010014883) #33	DTD1 (ENSBMSG00010014971) #35	SMIM26 (ENSBMSG00010015007) #36	SEC23B (ENSBMSG00010015074) #37	RBBP9 (ENSBMSG00010015177)	POLR3F (ENSBMSG00010015197)
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Sperm whale	MODERN SPECIES	5	APMAP (ENSPCTG00005009088)	CST7 (ENSPCTG00005009166)	ENSPCTG00005009228	ENSPCTG00005009273 #14	CSTL1 (ENSPCTG00005009306) #13	CST11 (ENSPCTG00005009381) #12	ENSPCTG00005009442 #11	ENSPCTG00005009487 #8	ENSPCTG00005009530 #7	ENSPCTG00005009585 #7	CST3 (ENSPCTG00005009637)	CD93 (ENSPCTG00005009671) #17	SSTR4 (ENSPCTG00005009716) #19	FOXA2 (ENSPCTG00005009780) #20	PAX1 (ENSPCTG00005009858) #21	NKX2-2 (ENSPCTG00005009931) #22	NKX2-4 (ENSPCTG00005009959) #23	XRN2 (ENSPCTG00005010006) #24	KIZ (ENSPCTG00005010162) #25	RALGAPA2 (ENSPCTG00005010848) #27	INSM1 (ENSPCTG00005011042) #28	CFAP61 (ENSPCTG00005011086) #29	CRNKL1 (ENSPCTG00005011230) #30	NAA20 (ENSPCTG00005011278) #31	ENSPCTG00005011375 #32	SLC24A3 (ENSPCTG00005011433) #33	SCP2D1 (ENSPCTG00005011622) #34	DTD1 (ENSPCTG00005011639) #35	SMIM26 (ENSPCTG00005011687) #36	SEC23B (ENSPCTG00005011745) #37	RBBP9 (ENSPCTG00005011839)
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Dolphin	MODERN SPECIES	2997																NKX2-2 (ENSTTRG00000009146) #22	XRN2 (ENSTTRG00000009087) #24	KIZ (ENSTTRG00000009024) #25
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34
Vaquita	MODERN SPECIES	6	ACSS1 (ENSPSNG00000010625)	APMAP (ENSPSNG00000010757)	CST7 (ENSPSNG00000010836)	SYNDIG1 (ENSPSNG00000010897)	CST3 (ENSPSNG00000010957)	ENSPSNG00000011009 #7	ENSPSNG00000011147 #8	ENSPSNG00000011208 #14	GZF1 (ENSPSNG00000011314) #15	NXT1 (ENSPSNG00000011355) #16	CD93 (ENSPSNG00000011407) #17	THBD (ENSPSNG00000011441) #18	SSTR4 (ENSPSNG00000011467) #19	FOXA2 (ENSPSNG00000004696) #20	PAX1 (ENSPSNG00000004773) #21	NKX2-2 (ENSPSNG00000004832) #22	NKX2-4 (ENSPSNG00000004868) #23	XRN2 (ENSPSNG00000004918) #24	KIZ (ENSPSNG00000005041) #25	ENSPSNG00000005168 #27	ENSPSNG00000005197 #27	INSM1 (ENSPSNG00000005223) #28	ENSPSNG00000005235	ENSPSNG00000005250 #29	ENSPSNG00000005292 #29	BLCAP (ENSPSNG00000005346)	ENSPSNG00000005363	CRNKL1 (ENSPSNG00000005386) #30	NAA20 (ENSPSNG00000005428) #31	RIN2 (ENSPSNG00000005508) #32	SLC24A3 (ENSPSNG00000005554) #33
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35
Narwhal	MODERN SPECIES	299	CST7 (ENSMMNG00015013746)	SYNDIG1 (ENSMMNG00015013754)	CST3 (ENSMMNG00015013767)	ENSMMNG00015013782 #7	ENSMMNG00015013807 #8	CST11 (ENSMMNG00015013816) #12	CSTL1 (ENSMMNG00015013827) #13	ENSMMNG00015013840 #14	GZF1 (ENSMMNG00015013857) #15	NXT1 (ENSMMNG00015013866) #16	CD93 (ENSMMNG00015013869) #17	THBD (ENSMMNG00015013881) #18	SSTR4 (ENSMMNG00015013888) #19	FOXA2 (ENSMMNG00015013909) #20	PAX1 (ENSMMNG00015013924) #21	NKX2-2 (ENSMMNG00015013937) #22	NKX2-4 (ENSMMNG00015013943) #23	XRN2 (ENSMMNG00015013954) #24	KIZ (ENSMMNG00015014032) #25	RALGAPA2 (ENSMMNG00015014137) #27	INSM1 (ENSMMNG00015014194) #28	CFAP61 (ENSMMNG00015014206) #29	ENSMMNG00015014237	ENSMMNG00015014247	CRNKL1 (ENSMMNG00015014256) #30	NAA20 (ENSMMNG00015014274) #31	RIN2 (ENSMMNG00015014306) #32	SLC24A3 (ENSMMNG00015014333) #33	SCP2D1 (ENSMMNG00015014357) #34	DTD1 (ENSMMNG00015014368) #35	SMIM26 (ENSMMNG00015014382) #36
Beluga whale	MODERN SPECIES	48	SYNDIG1 (ENSDLEG00000004982)	CST3 (ENSDLEG00000004985)	ENSDLEG00000005018 #7	ENSDLEG00000005035 #8	ENSDLEG00000005044 #11	CST11 (ENSDLEG00000005067) #12	CSTL1 (ENSDLEG00000005075) #13	ENSDLEG00000005080 #14	GZF1 (ENSDLEG00000005091) #15	NXT1 (ENSDLEG00000005096) #16	CD93 (ENSDLEG00000005100) #17	THBD (ENSDLEG00000005104) #18	SSTR4 (ENSDLEG00000005108) #19	FOXA2 (ENSDLEG00000005115) #20	PAX1 (ENSDLEG00000005123) #21	NKX2-2 (ENSDLEG00000005132) #22	NKX2-4 (ENSDLEG00000005154) #23	XRN2 (ENSDLEG00000005166) #24	KIZ (ENSDLEG00000005207) #25	RALGAPA2 (ENSDLEG00000005252) #27	CFAP61 (ENSDLEG00000005301) #29	ENSDLEG00000005319	ENSDLEG00000005324	CRNKL1 (ENSDLEG00000005333) #30	NAA20 (ENSDLEG00000005370) #31	RIN2 (ENSDLEG00000005378) #32	SLC24A3 (ENSDLEG00000005408) #33	ENSDLEG00000005476	SCP2D1 (ENSDLEG00000005480) #34	DTD1 (ENSDLEG00000005506) #35	SMIM26 (ENSDLEG00000005510) #36
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000161877.j #7	ENSGT00940000161877.i #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000023900 #9	ENSCHYG00000023874	ENSCHYG00000023860 #11	ENSCHYG00000023824 #12	ENSCHYG00000023804 #13	NAPB (ENSCHYG00000023659) #14	GZF1 (ENSCHYG00000023598) #15	NXT1 (ENSCHYG00000023576) #16	CD93 (ENSCHYG00000023556) #17	THBD (ENSCHYG00000023542) #18	ENSCHYG00000023501	ENSCHYG00000023462	FOXA2 (ENSCHYG00000023420) #20	PAX1 (ENSCHYG00000023364) #21	ENSCHYG00000023344	NKX2-2 (ENSCHYG00000023304) #22	NKX2-4 (ENSCHYG00000023282) #23	XRN2 (ENSCHYG00000022819) #24	ENSCHYG00000022761	ENSCHYG00000022734	KIZ (ENSCHYG00000022176) #25	RALGAPA2 (ENSCHYG00000021147) #27	INSM1 (ENSCHYG00000021030) #28	CFAP61 (ENSCHYG00000020914) #29	CRNKL1 (ENSCHYG00000020782) #30	NAA20 (ENSCHYG00000020635) #31	RIN2 (ENSCHYG00000020319) #32	ENSCHYG00000020275	SLC24A3 (ENSCHYG00000020129) #33	SCP2D1 (ENSCHYG00000020102) #34	DTD1 (ENSCHYG00000019989) #35
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000161877.j #7	ENSGT00940000161877.i #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Siberian musk deer	MODERN SPECIES	1194	CST3 (ENSMMSG00000018564)	ENSMMSG00000018584 #7	ENSMMSG00000018603 #8	CST8 (ENSMMSG00000018626) #9	ENSMMSG00000018653	ENSMMSG00000018676 #11	ENSMMSG00000018712 #12	CSTL1 (ENSMMSG00000018731) #13	NAPB (ENSMMSG00000018763) #14	GZF1 (ENSMMSG00000018836) #15	NXT1 (ENSMMSG00000018866) #16	CD93 (ENSMMSG00000018871) #17	THBD (ENSMMSG00000018897) #18	FOXA2 (ENSMMSG00000018910) #20	PAX1 (ENSMMSG00000018943) #21	NKX2-2 (ENSMMSG00000018973) #22	ENSMMSG00000018994	ENSMMSG00000019016	NKX2-4 (ENSMMSG00000019032) #23	XRN2 (ENSMMSG00000019064) #24	KIZ (ENSMMSG00000019151) #25	RALGAPA2 (ENSMMSG00000019313) #27	INSM1 (ENSMMSG00000019511) #28	ENSMMSG00000019522	ENSMMSG00000019535 #29	ENSMMSG00000019564 #29	CRNKL1 (ENSMMSG00000019594) #30	NAA20 (ENSMMSG00000019613) #31	RIN2 (ENSMMSG00000019665) #32	SLC24A3 (ENSMMSG00000019736) #33	SCP2D1 (ENSMMSG00000019818) #34
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000161877.j #7	ENSGT00940000161877.i #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00950000183014.f.a.h.u.a.a.b.a	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155114.wb.b	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT00390000001138.a.g	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00860000134050 #36	ENSGT00940000153431.b.b #35	ENSGT00390000006916.c #37
Rambouillet Sheep	MODERN SPECIES	4	ENSOARG00020005253 #8	ENSOARG00020005233 #9	ENSOARG00020005223	ENSOARG00020005206 #11	ENSOARG00020005178 #12	CSTL1 (ENSOARG00020005157) #13	NAPB (ENSOARG00020004860) #14	GZF1 (ENSOARG00020004766) #15	NXT1 (ENSOARG00020004744) #16	ENSOARG00020004719	CD93 (ENSOARG00020004706) #17	ENSOARG00020004667	FOXA2 (ENSOARG00020004643) #20	ENSOARG00020004631	PAX1 (ENSOARG00020004579) #21	NKX2-2 (ENSOARG00020004554) #22	NKX2-4 (ENSOARG00020004533) #23	XRN2 (ENSOARG00020004498) #24	KIZ (ENSOARG00020004321) #25	RALGAPA2 (ENSOARG00020003837) #27	INSM1 (ENSOARG00020003800) #28	CFAP61 (ENSOARG00020003632) #29	CRNKL1 (ENSOARG00020003543) #30	NAA20 (ENSOARG00020003499) #31	RIN2 (ENSOARG00020003240) #32	ENSOARG00020023127	SLC24A3 (ENSOARG00020023051) #33	SCP2D1 (ENSOARG00020023032) #34	ENSOARG00020023011 #35	SMIM26 (ENSOARG00020022969) #36	SEC23B (ENSOARG00020022920) #37
Goat	MODERN SPECIES	4	ENSCHIG00000022173 #7	ENSCHIG00000009930 #7	ENSCHIG00000021829 #8	ENSCHIG00000025947 #9	ENSCHIG00000017766	ENSCHIG00000003642 #11	ENSCHIG00000021813 #12	NAPB (ENSCHIG00000020249) #14	GZF1 (ENSCHIG00000008882) #15	ENSCHIG00000021979	CD93 (ENSCHIG00000009092) #17	THBD (ENSCHIG00000010975) #18	ENSCHIG00000022438	FOXA2 (ENSCHIG00000013879) #20	PAX1 (ENSCHIG00000025250) #21	NKX2-2 (ENSCHIG00000025252) #22	NKX2-4 (ENSCHIG00000017092) #23	ENSCHIG00000009213	XRN2 (ENSCHIG00000006921) #24	KIZ (ENSCHIG00000020496) #25	ENSCHIG00000001410	ENSCHIG00000005268	RALGAPA2 (ENSCHIG00000023081) #27	INSM1 (ENSCHIG00000002944) #28	CFAP61 (ENSCHIG00000022048) #29	CRNKL1 (ENSCHIG00000013171) #30	NAA20 (ENSCHIG00000021922) #31	RIN2 (ENSCHIG00000009997) #32	ENSCHIG00000020114	ENSCHIG00000008840	SLC24A3 (ENSCHIG00000010684) #33
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT00390000001138.a.g.b	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Bos	ANCESTRAL SPECIES	22	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554.jb #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137.d #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B.d #32	ENSGT00390000001138.a.g.b	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554.jb #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137.d #21	ENSGT00940000153362.a.bb.b.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B.d #32	ENSGT00390000001138.a.g.b	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00950000183210.d.a.c.a.a.b.f.a.b	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Cow	MODERN SPECIES	4	SYNDIG1 (ENSBTAG00000040147)	CST3 (ENSBTAG00000000598)	ENSBTAG00000032687 #7	ENSBTAG00000015949 #8	CST8 (ENSBTAG00000032694) #9	MGC133636 (ENSBTAG00000013416) #11	ENSBTAG00000027420	NAPB (ENSBTAG00000032704) #14	GZF1 (ENSBTAG00000008908) #15	NXT1 (ENSBTAG00000004993) #16	CD93 (ENSBTAG00000004207) #17	THBD (ENSBTAG00000048591) #18	FOXA2 (ENSBTAG00000012407) #20	PAX1 (ENSBTAG00000006742) #21	ENSBTAG00000035643	NKX2-2 (ENSBTAG00000010277) #22	NKX2-4 (ENSBTAG00000011312) #23	XRN2 (ENSBTAG00000011304) #24	KIZ (ENSBTAG00000020988) #25	RALGAPA2 (ENSBTAG00000014178) #27	CFAP61 (ENSBTAG00000009291) #29	CRNKL1 (ENSBTAG00000008472) #30	NAA20 (ENSBTAG00000001144) #31	RIN2 (ENSBTAG00000020382) #32	ENSBTAG00000032893	SLC24A3 (ENSBTAG00000011882) #33	SCP2D1 (ENSBTAG00000005202) #34	ENSBTAG00000012276	DTD1 (ENSBTAG00000008964) #35	SMIM26 (ENSBTAG00000051249) #36	SEC23B (ENSBTAG00000018295) #37
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000161877.j #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554.jb #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137.d #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B.d #32	ENSGT00960000190537	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00950000183210.d.a.c.a.a.b.f.a.b	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Wild yak	MODERN SPECIES	194											CD93 (ENSBMUG00000003082) #17	ENSBMUG00000003102 #18	FOXA2 (ENSBMUG00000003127) #20	PAX1 (ENSBMUG00000003140) #21	ENSBMUG00000003171	NKX2-2 (ENSBMUG00000003181) #22	XRN2 (ENSBMUG00000003295) #24	KIZ (ENSBMUG00000003411) #25	RALGAPA2 (ENSBMUG00000003599) #27	CFAP61 (ENSBMUG00000003762) #29	CRNKL1 (ENSBMUG00000003809) #30	NAA20 (ENSBMUG00000003835) #31	RIN2 (ENSBMUG00000003883) #32	ENSBMUG00000003910	SLC24A3 (ENSBMUG00000003930) #33	SCP2D1 (ENSBMUG00000003945) #34	ENSBMUG00000003967	DTD1 (ENSBMUG00000004000) #35	SMIM26 (ENSBMUG00000004015) #36	SEC23B (ENSBMUG00000004165) #37	RBBP9 (ENSBMUG00000004226)
Domestic yak	MODERN SPECIES	3	ENSBGRG00000007655	ENSBGRG00000007612 #11	ENSBGRG00000007520 #12	CSTL1 (ENSBGRG00000007456) #13	NAPB (ENSBGRG00000007201) #14	ENSBGRG00000007150 #15	ENSBGRG00000007097 #15	NXT1 (ENSBGRG00000007076) #16	ENSBGRG00000007043	CD93 (ENSBGRG00000006986) #17	THBD (ENSBGRG00000006963) #18	FOXA2 (ENSBGRG00000006927) #20	PAX1 (ENSBGRG00000006855) #21	ENSBGRG00000006824 #21	ENSBGRG00000006808	NKX2-2 (ENSBGRG00000006790) #22	NKX2-4 (ENSBGRG00000006760) #23	XRN2 (ENSBGRG00000006633) #24	KIZ (ENSBGRG00000006486) #25	ENSBGRG00000006333 #27	ENSBGRG00000006247 #27	INSM1 (ENSBGRG00000006219) #28	CFAP61 (ENSBGRG00000006111) #29	CRNKL1 (ENSBGRG00000006006) #30	NAA20 (ENSBGRG00000005893) #31	ENSBGRG00000005870 #32	ENSBGRG00000005832 #32	SLC24A3 (ENSBGRG00000005785) #33	ENSBGRG00000005768	DTD1 (ENSBGRG00000005731) #35	SMIM26 (ENSBGRG00000005700) #36
American bison	MODERN SPECIES	2997	CST3 (ENSBBBG00000005938)	ENSBBBG00000022502 #7	ENSBBBG00000022506 #8	CST8 (ENSBBBG00000022516) #9	ENSBBBG00000005942	ENSBBBG00000022528 #11	ENSBBBG00000022535 #12	CSTL1 (ENSBBBG00000022543) #13	NAPB (ENSBBBG00000022632) #14	GZF1 (ENSBBBG00000022655) #15	CD93 (ENSBBBG00000005967) #17	THBD (ENSBBBG00000022684) #18	FOXA2 (ENSBBBG00000022700) #20	PAX1 (ENSBBBG00000022763) #21	ENSBBBG00000022780	ENSBBBG00000022786 #22	XRN2 (ENSBBBG00000022814) #24	KIZ (ENSBBBG00000022908) #25	RALGAPA2 (ENSBBBG00000022984) #27	ENSBBBG00000022996 #28	CFAP61 (ENSBBBG00000006046) #29	CRNKL1 (ENSBBBG00000008793) #30	NAA20 (ENSBBBG00000023097) #31	RIN2 (ENSBBBG00000023140) #32	ENSBBBG00000023147	SLC24A3 (ENSBBBG00000000461) #33	SCP2D1 (ENSBBBG00000000425) #34	DTD1 (ENSBBBG00000000410) #35	SMIM26 (ENSBBBG00000000399) #36	SEC23B (ENSBBBG00000023236) #37	RBBP9 (ENSBBBG00000006080)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Equus	ANCESTRAL SPECIES	8	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00510000047812.l	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861
Horse	MODERN SPECIES	14	SYNDIG1 (ENSECAG00000006421)	CST3 (ENSECAG00000038893)	ENSECAG00000045045 #8	CST9L (ENSECAG00000010654) #7	CST8 (ENSECAG00000029932) #9	ENSECAG00000014988 #11	CST11 (ENSECAG00000016342) #12	CSTL1 (ENSECAG00000019672) #13	NAPB (ENSECAG00000022016) #14	GZF1 (ENSECAG00000011343) #15	NXT1 (ENSECAG00000035032) #16	CD93 (ENSECAG00000016324) #17	THBD (ENSECAG00000005241) #18	FOXA2 (ENSECAG00000032004) #20	PAX1 (ENSECAG00000016945) #21	NKX2-2 (ENSECAG00000018977) #22	NKX2-4 (ENSECAG00000037105) #23	XRN2 (ENSECAG00000018988) #24	KIZ (ENSECAG00000016626) #25	ENSECAG00000036437	RALGAPA2 (ENSECAG00000019950) #27	INSM1 (ENSECAG00000037552) #28	CFAP61 (ENSECAG00000004364) #29	CRNKL1 (ENSECAG00000022215) #30	NAA20 (ENSECAG00000012609) #31	RIN2 (ENSECAG00000015381) #32	SLC24A3 (ENSECAG00000019334) #33	DTD1 (ENSECAG00000025075) #35	SEC23B (ENSECAG00000025087) #37	RBBP9 (ENSECAG00000001333)	POLR3F (ENSECAG00000009920)
Donkey	MODERN SPECIES	6	ENSEASG00005002598	ENSEASG00005027176 #7	ENSEASG00005025391 #8	CST8 (ENSEASG00005030555) #9	ENSEASG00005031840	CST11 (ENSEASG00005002576) #12	CSTL1 (ENSEASG00005002572) #13	NAPB (ENSEASG00005002564) #14	GZF1 (ENSEASG00005002557) #15	NXT1 (ENSEASG00005033641) #16	CD93 (ENSEASG00005002547) #17	THBD (ENSEASG00005027531) #18	SSTR4 (ENSEASG00005002540) #19	FOXA2 (ENSEASG00005002535) #20	PAX1 (ENSEASG00005002521) #21	NKX2-2 (ENSEASG00005038540) #22	NKX2-4 (ENSEASG00005002501) #23	XRN2 (ENSEASG00005002484) #24	KIZ (ENSEASG00005002467) #25	ENSEASG00005002454	RALGAPA2 (ENSEASG00005002224) #27	INSM1 (ENSEASG00005002118) #28	CFAP61 (ENSEASG00005002079) #29	CRNKL1 (ENSEASG00005002072) #30	NAA20 (ENSEASG00005002069) #31	RIN2 (ENSEASG00005002067) #32	SLC24A3 (ENSEASG00005002055) #33	SCP2D1 (ENSEASG00005037273) #34	DTD1 (ENSEASG00005002041) #35	SEC23B (ENSEASG00005002036) #37	RBBP9 (ENSEASG00005023627)
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Microbat	MODERN SPECIES	1142															PAX1 (ENSMLUG00000014710) #21	NKX2-2 (ENSMLUG00000009371) #22	XRN2 (ENSMLUG00000001536) #24	KIZ (ENSMLUG00000001531) #25	RALGAPA2 (ENSMLUG00000016548) #27	CFAP61 (ENSMLUG00000016527) #29	CRNKL1 (ENSMLUG00000016513) #30	NAA20 (ENSMLUG00000016508) #31	RIN2 (ENSMLUG00000016498) #32	SLC24A3 (ENSMLUG00000005788) #33
Greater horseshoe bat	MODERN SPECIES	15	CST9L (ENSRFEG00010011055) #7	ENSRFEG00010011001 #8	ENSRFEG00010010952	CST11 (ENSRFEG00010010901) #12	CSTL1 (ENSRFEG00010010843) #13	NAPB (ENSRFEG00010010719) #14	GZF1 (ENSRFEG00010010618) #15	NXT1 (ENSRFEG00010010600) #16	CD93 (ENSRFEG00010010553) #17	THBD (ENSRFEG00010010533) #18	ENSRFEG00010010499	ENSRFEG00010010431	FOXA2 (ENSRFEG00010010354) #20	ENSRFEG00010010271	PAX1 (ENSRFEG00010010205) #21	NKX2-2 (ENSRFEG00010010185) #22	NKX2-4 (ENSRFEG00010010146) #23	XRN2 (ENSRFEG00010010058) #24	ENSRFEG00010010021	KIZ (ENSRFEG00010009832) #25	ENSRFEG00010009788	RALGAPA2 (ENSRFEG00010009655) #27	INSM1 (ENSRFEG00010009617) #28	CFAP61 (ENSRFEG00010009533) #29	CRNKL1 (ENSRFEG00010009485) #30	NAA20 (ENSRFEG00010009410) #31	RIN2 (ENSRFEG00010009330) #32	ENSRFEG00010009294	SLC24A3 (ENSRFEG00010009266) #33	ENSRFEG00010009202	DTD1 (ENSRFEG00010009168) #35
Carnivora	ANCESTRAL SPECIES	20	ENSGT00940000161877.n #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000163249 #8	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000163249 #8	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Tiger	MODERN SPECIES	535	ENSPTIG00000007645	ENSPTIG00000007325	CST9L (ENSPTIG00000007266) #7	ENSPTIG00000007155 #8	CST8 (ENSPTIG00000006377) #9	ENSPTIG00000005641	ENSPTIG00000005550 #11	CST11 (ENSPTIG00000003091) #12	ENSPTIG00000001355	NAPB (ENSPTIG00000019947) #14	GZF1 (ENSPTIG00000019328) #15	NXT1 (ENSPTIG00000003788) #16	CD93 (ENSPTIG00000018580) #17	SSTR4 (ENSPTIG00000003769) #19	PAX1 (ENSPTIG00000017141) #21	NKX2-2 (ENSPTIG00000016807) #22	XRN2 (ENSPTIG00000015683) #24	KIZ (ENSPTIG00000015123) #25	RALGAPA2 (ENSPTIG00000012682) #27	CFAP61 (ENSPTIG00000009217) #29	CRNKL1 (ENSPTIG00000007393) #30	NAA20 (ENSPTIG00000006328) #31	RIN2 (ENSPTIG00000003100) #32	SLC24A3 (ENSPTIG00000021465) #33	SCP2D1 (ENSPTIG00000002789) #34	DTD1 (ENSPTIG00000020971) #35	SEC23B (ENSPTIG00000020593) #37	RBBP9 (ENSPTIG00000020464)	POLR3F (ENSPTIG00000020292)	DZANK1 (ENSPTIG00000017259)	ZNF133 (ENSPTIG00000016359)
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000163249 #8	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046.k #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
leopard	MODERN SPECIES	39	ENSPPRG00000015946 #8	ENSPPRG00000015501	CST8 (ENSPPRG00000015009) #9	ENSPPRG00000014635	ENSPPRG00000013202 #11	CST11 (ENSPPRG00000011764) #12	ENSPPRG00000011394	NAPB (ENSPPRG00000010805) #14	GZF1 (ENSPPRG00000010040) #15	NXT1 (ENSPPRG00000021392) #16	CD93 (ENSPPRG00000009570) #17	THBD (ENSPPRG00000021378) #18	SSTR4 (ENSPPRG00000021367) #19	FOXA2 (ENSPPRG00000009206) #20	PAX1 (ENSPPRG00000009070) #21	NKX2-2 (ENSPPRG00000008916) #22	NKX2-4 (ENSPPRG00000008761) #23	XRN2 (ENSPPRG00000008732) #24	KIZ (ENSPPRG00000007745) #25	RALGAPA2 (ENSPPRG00000006401) #27	INSM1 (ENSPPRG00000021271) #28	CFAP61 (ENSPPRG00000004321) #29	CRNKL1 (ENSPPRG00000001955) #30	ENSPPRG00000001197 #31	ENSPPRG00000000577 #32	SLC24A3 (ENSPPRG00000022720) #33	SCP2D1 (ENSPPRG00000021046) #34	DTD1 (ENSPPRG00000023943) #35	SEC23B (ENSPPRG00000024318) #37	RBBP9 (ENSPPRG00000024506)	POLR3F (ENSPPRG00000024604)
lion	MODERN SPECIES	3	CST9L (ENSPLOG00000000670) #7	ENSPLOG00000000686 #8	CST8 (ENSPLOG00000000695) #9	ENSPLOG00000000715	ENSPLOG00000000735 #11	CST11 (ENSPLOG00000000758) #12	CSTL1 (ENSPLOG00000000776) #13	NAPB (ENSPLOG00000000809) #14	GZF1 (ENSPLOG00000000839) #15	NXT1 (ENSPLOG00000000844) #16	CD93 (ENSPLOG00000000855) #17	THBD (ENSPLOG00000000869) #18	SSTR4 (ENSPLOG00000000946) #19	FOXA2 (ENSPLOG00000000959) #20	PAX1 (ENSPLOG00000000971) #21	NKX2-2 (ENSPLOG00000000985) #22	NKX2-4 (ENSPLOG00000001002) #23	XRN2 (ENSPLOG00000001042) #24	KIZ (ENSPLOG00000001155) #25	RALGAPA2 (ENSPLOG00000001266) #27	INSM1 (ENSPLOG00000001312) #28	CFAP61 (ENSPLOG00000001356) #29	CRNKL1 (ENSPLOG00000001416) #30	NAA20 (ENSPLOG00000001447) #31	RIN2 (ENSPLOG00000001490) #32	SLC24A3 (ENSPLOG00000001538) #33	DTD1 (ENSPLOG00000001574) #35	SMIM26 (ENSPLOG00000001583) #36	SEC23B (ENSPLOG00000001608) #37	RBBP9 (ENSPLOG00000001658)	POLR3F (ENSPLOG00000001687)
Cat	MODERN SPECIES	2	ENSFCAG00000027887 #8	ENSFCAG00000023071	CST8 (ENSFCAG00000023255) #9	ENSFCAG00000042989	ENSFCAG00000026179 #11	CST11 (ENSFCAG00000003949) #12	CSTL1 (ENSFCAG00000041684) #13	NAPB (ENSFCAG00000037279) #14	GZF1 (ENSFCAG00000006484) #15	NXT1 (ENSFCAG00000006482) #16	CD93 (ENSFCAG00000025238) #17	THBD (ENSFCAG00000011513) #18	SSTR4 (ENSFCAG00000022777) #19	FOXA2 (ENSFCAG00000012368) #20	PAX1 (ENSFCAG00000004293) #21	NKX2-2 (ENSFCAG00000008740) #22	NKX2-4 (ENSFCAG00000045261) #23	XRN2 (ENSFCAG00000007970) #24	KIZ (ENSFCAG00000007966) #25	RALGAPA2 (ENSFCAG00000028385) #27	INSM1 (ENSFCAG00000040680) #28	CFAP61 (ENSFCAG00000000715) #29	CRNKL1 (ENSFCAG00000000714) #30	NAA20 (ENSFCAG00000028113) #31	RIN2 (ENSFCAG00000014527) #32	SLC24A3 (ENSFCAG00000008015) #33	SCP2D1 (ENSFCAG00000003254) #34	ENSFCAG00000051916	DTD1 (ENSFCAG00000013835) #35	SMIM26 (ENSFCAG00000048664) #36	SEC23B (ENSFCAG00000013833) #37
Caniformia	ANCESTRAL SPECIES		ENSGT00940000161877.m #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Canidae	ANCESTRAL SPECIES	19			ENSGT00940000157363.b	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046.j.a #31	ENSGT00940000161804.d.a	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Red fox	MODERN SPECIES	40				ENSVVUG00000012055	ENSVVUG00000012058 #8	ENSVVUG00000012060 #9	ENSVVUG00000012064	ENSVVUG00000012067	CST11 (ENSVVUG00000012069) #12	CSTL1 (ENSVVUG00000012073) #13	NAPB (ENSVVUG00000012075) #14	GZF1 (ENSVVUG00000012086) #15	NXT1 (ENSVVUG00000012091) #16	ENSVVUG00000012111	PAX1 (ENSVVUG00000012146) #21	NKX2-2 (ENSVVUG00000012163) #22	ENSVVUG00000012172 #23	XRN2 (ENSVVUG00000012178) #24	KIZ (ENSVVUG00000012190) #25	RALGAPA2 (ENSVVUG00000012242) #27	ENSVVUG00000012364	CFAP61 (ENSVVUG00000012388) #29	ENSVVUG00000012539	CRNKL1 (ENSVVUG00000012559) #30	NAA20 (ENSVVUG00000012582) #31	ENSVVUG00000012599	RIN2 (ENSVVUG00000012604) #32	SLC24A3 (ENSVVUG00000012656) #33	ENSVVUG00000012858 #34	DTD1 (ENSVVUG00000012861) #35	SMIM26 (ENSVVUG00000012870) #36
Canis_lupus	ANCESTRAL SPECIES	13		ENSGT00940000157363.b	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT01100000263605.j	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046.j.a #31	ENSGT00940000161804.d.a	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Dingo	MODERN SPECIES	343	ENSCAFG00020027456 #8	CST8 (ENSCAFG00020027457) #9	ENSCAFG00020027458	CST11 (ENSCAFG00020027459) #12	CSTL1 (ENSCAFG00020027460) #13	ENSCAFG00020027461 #14	ENSCAFG00020027463 #15	ENSCAFG00020027464 #15	ENSCAFG00020027465 #16	CD93 (ENSCAFG00020027467) #17	THBD (ENSCAFG00020027468) #18	ENSCAFG00020027470	ENSCAFG00020027471	FOXA2 (ENSCAFG00020027472) #20	PAX1 (ENSCAFG00020027475) #21	NKX2-2 (ENSCAFG00020027477) #22	NKX2-4 (ENSCAFG00020027478) #23	XRN2 (ENSCAFG00020027479) #24	KIZ (ENSCAFG00020027480) #25	RALGAPA2 (ENSCAFG00020027484) #27	CFAP61 (ENSCAFG00020027486) #29	ENSCAFG00020027487	CRNKL1 (ENSCAFG00020027488) #30	ENSCAFG00020027489 #31	ENSCAFG00020027490	RIN2 (ENSCAFG00020027491) #32	SLC24A3 (ENSCAFG00020027492) #33	SCP2D1 (ENSCAFG00020027495) #34	DTD1 (ENSCAFG00020027496) #35	SMIM26 (ENSCAFG00020027497) #36	SEC23B (ENSCAFG00020027498) #37
Dog	MODERN SPECIES	16	HUS1 (ENSCAFG00845026030)	ENSCAFG00845026576	ENSCAFG00845026609 #8	CST8 (ENSCAFG00845026649) #9	ENSCAFG00845026671	CST11 (ENSCAFG00845026760) #12	CSTL1 (ENSCAFG00845026794) #13	NAPB (ENSCAFG00845026852) #14	GZF1 (ENSCAFG00845027001) #15	CD93 (ENSCAFG00845027134) #17	THBD (ENSCAFG00845027195) #18	ENSCAFG00845027219	ENSCAFG00845027242	FOXA2 (ENSCAFG00845027259) #20	PAX1 (ENSCAFG00845027290) #21	NKX2-2 (ENSCAFG00845027437) #22	NKX2-4 (ENSCAFG00845027483) #23	XRN2 (ENSCAFG00845027569) #24	KIZ (ENSCAFG00845028046) #25	RALGAPA2 (ENSCAFG00845028444) #27	CFAP61 (ENSCAFG00845028852) #29	ENSCAFG00845028933	CRNKL1 (ENSCAFG00845028961) #30	NAA20 (ENSCAFG00845029048) #31	ENSCAFG00845029111	RIN2 (ENSCAFG00845029255) #32	SLC24A3 (ENSCAFG00845029352) #33	SCP2D1 (ENSCAFG00845029392) #34	ENSCAFG00845029447 #35	ENSCAFG00845029520 #36	SEC23B (ENSCAFG00845029542) #37
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000161877.m.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Mustelinae	ANCESTRAL SPECIES	43	ENSGT00940000161877.m.a #7	ENSGT00940000161877.n #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
American mink	MODERN SPECIES	460															PAX1 (ENSNVIG00000024342) #21	NKX2-2 (ENSNVIG00000024347) #22	NKX2-4 (ENSNVIG00000024348) #23	XRN2 (ENSNVIG00000024349) #24	KIZ (ENSNVIG00000024357) #25
Ferret	MODERN SPECIES	204	ENSMPUG00000001137 #7	ENSMPUG00000001138 #7	ENSMPUG00000001140	CST8 (ENSMPUG00000001143) #9	ENSMPUG00000001151	CST11 (ENSMPUG00000001154) #12	NAPB (ENSMPUG00000001158) #14	GZF1 (ENSMPUG00000001160) #15	NXT1 (ENSMPUG00000019260) #16	CD93 (ENSMPUG00000001163) #17	THBD (ENSMPUG00000019265) #18	SSTR4 (ENSMPUG00000019271) #19	FOXA2 (ENSMPUG00000001166) #20	ENSMPUG00000001167	PAX1 (ENSMPUG00000001187) #21	NKX2-2 (ENSMPUG00000001196) #22	XRN2 (ENSMPUG00000001198) #24	KIZ (ENSMPUG00000001201) #25	ENSMPUG00000019274	ENSMPUG00000001204	RALGAPA2 (ENSMPUG00000001210) #27	INSM1 (ENSMPUG00000001216) #28	CFAP61 (ENSMPUG00000001219) #29	CRNKL1 (ENSMPUG00000001226) #30	NAA20 (ENSMPUG00000001228) #31	RIN2 (ENSMPUG00000001230) #32	ENSMPUG00000001233	SLC24A3 (ENSMPUG00000001234) #33	ENSMPUG00000001236	SCP2D1 (ENSMPUG00000019276) #34	DTD1 (ENSMPUG00000001238) #35
Ursidae	ANCESTRAL SPECIES	14	ENSGT00940000161877.m.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861	ENSGT00390000009679
Giant Panda	MODERN SPECIES	4	ENSAMEG00000009914 #8	CST8 (ENSAMEG00000009906) #9	ENSAMEG00000009904	CST11 (ENSAMEG00000009897) #12	CSTL1 (ENSAMEG00000026681) #13	NAPB (ENSAMEG00000009863) #14	GZF1 (ENSAMEG00000009853) #15	NXT1 (ENSAMEG00000018729) #16	ENSAMEG00000024065	CD93 (ENSAMEG00000009849) #17	THBD (ENSAMEG00000019083) #18	SSTR4 (ENSAMEG00000019048) #19	FOXA2 (ENSAMEG00000015802) #20	ENSAMEG00000031412	PAX1 (ENSAMEG00000012642) #21	NKX2-2 (ENSAMEG00000029802) #22	NKX2-4 (ENSAMEG00000030670) #23	XRN2 (ENSAMEG00000012581) #24	KIZ (ENSAMEG00000012566) #25	RALGAPA2 (ENSAMEG00000000299) #27	CFAP61 (ENSAMEG00000000288) #29	CRNKL1 (ENSAMEG00000000270) #30	NAA20 (ENSAMEG00000000262) #31	RIN2 (ENSAMEG00000000240) #32	SLC24A3 (ENSAMEG00000000234) #33	SCP2D1 (ENSAMEG00000018743) #34	DTD1 (ENSAMEG00000005878) #35	SMIM26 (ENSAMEG00000025598) #36	SEC23B (ENSAMEG00000005865) #37	RBBP9 (ENSAMEG00000005238)	POLR3F (ENSAMEG00000005222)
Ursus	ANCESTRAL SPECIES	191	ENSGT00940000161877.n #7	ENSGT00940000161877.m.b #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041 #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25
Polar bear	MODERN SPECIES	300	ENSUMAG00000004190 #7	ENSUMAG00000004185 #7	ENSUMAG00000004168 #7	ENSUMAG00000004162 #8	CST8 (ENSUMAG00000004155) #9	ENSUMAG00000004147	ENSUMAG00000004140 #11	CST11 (ENSUMAG00000004135) #12	CSTL1 (ENSUMAG00000004128) #13	NAPB (ENSUMAG00000004081) #14	GZF1 (ENSUMAG00000004065) #15	NXT1 (ENSUMAG00000004062) #16	CD93 (ENSUMAG00000004052) #17	SSTR4 (ENSUMAG00000004048) #19	PAX1 (ENSUMAG00000004035) #21	ENSUMAG00000004026 #22	XRN2 (ENSUMAG00000004012) #24	KIZ (ENSUMAG00000003912) #25	ENSUMAG00000003879 #27
American black bear	MODERN SPECIES	956																NKX2-2 (ENSUAMG00000024865) #22	ENSUAMG00000024864 #23	XRN2 (ENSUAMG00000024634) #24	KIZ (ENSUAMG00000024603) #25
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B #11	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041.l #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00940000154755	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041.l #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861
Tenrec	MODERN SPECIES	17925																NKX2-2 (ENSETEG00000010501) #22
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00940000154755	ENSGT00940000161877 #7	ENSGT00940000163249 #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #12	ENSGT00900000141212 #13	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000162041.l #16	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00390000006916.c #37	ENSGT00390000014861
Hyrax	MODERN SPECIES	8892																NKX2-2 (ENSPCAG00000008298) #22
Elephant	MODERN SPECIES	180	ENSLAFG00000002805 #7	ENSLAFG00000006741 #8	CST8 (ENSLAFG00000002803) #9	ENSLAFG00000030756 #10	ENSLAFG00000008240 #12	CSTL1 (ENSLAFG00000008243) #13	NAPB (ENSLAFG00000002461) #14	GZF1 (ENSLAFG00000002458) #15	NXT1 (ENSLAFG00000029098) #16	CD93 (ENSLAFG00000027545) #17	THBD (ENSLAFG00000012832) #18	ENSLAFG00000032254 #19	FOXA2 (ENSLAFG00000026345) #20	ENSLAFG00000031871	PAX1 (ENSLAFG00000008908) #21	NKX2-2 (ENSLAFG00000002379) #22	ENSLAFG00000014638 #23	XRN2 (ENSLAFG00000014624) #24	KIZ (ENSLAFG00000002389) #25	ENSLAFG00000032497 #27	ENSLAFG00000011596 #27	INSM1 (ENSLAFG00000011594) #28	ENSLAFG00000029531	ENSLAFG00000028424 #29	ENSLAFG00000004520 #29	CRNKL1 (ENSLAFG00000004512) #30	NAA20 (ENSLAFG00000004510) #31	RIN2 (ENSLAFG00000015169) #32	SLC24A3 (ENSLAFG00000012423) #33	SCP2D1 (ENSLAFG00000007035) #34	DTD1 (ENSLAFG00000003645) #35
Xenarthra	ANCESTRAL SPECIES	347															ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33
Armadillo	MODERN SPECIES	425															PAX1 (ENSDNOG00000033546) #21	NKX2-2 (ENSDNOG00000038407) #22	ENSDNOG00000025932	NKX2-4 (ENSDNOG00000040998) #23	XRN2 (ENSDNOG00000001895) #24	KIZ (ENSDNOG00000046969) #25	RALGAPA2 (ENSDNOG00000016236) #27	INSM1 (ENSDNOG00000033318) #28	CFAP61 (ENSDNOG00000016231) #29	CRNKL1 (ENSDNOG00000016226) #30	NAA20 (ENSDNOG00000034715) #31	RIN2 (ENSDNOG00000016218) #32	SLC24A3 (ENSDNOG00000016125) #33	ENSDNOG00000004039
Marsupialia	ANCESTRAL SPECIES	19	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249 #8	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249 #8	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249 #8	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249 #8	ENSGT00390000005826.a.b #14	ENSGT00870000136554 #15	ENSGT00940000156996 #17	ENSGT00940000163276 #18	ENSGT00940000156819.a.a #19	ENSGT00940000155999 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
koala	MODERN SPECIES	1	CST7 (ENSPCIG00000035164)	SYNDIG1 (ENSPCIG00000008651)	ENSPCIG00000008654	ENSPCIG00000036306	ENSPCIG00000013810 #8	ENSPCIG00000013809	NAPB (ENSPCIG00000013805) #14	ENSPCIG00000031294 #15	ENSPCIG00000013803 #15	ENSPCIG00000013801	CD93 (ENSPCIG00000015492) #17	ENSPCIG00000015494	SSTR4 (ENSPCIG00000015498) #19	FOXA2 (ENSPCIG00000025918) #20	PAX1 (ENSPCIG00000031385) #21	NKX2-2 (ENSPCIG00000034162) #22	ENSPCIG00000031596	NKX2-4 (ENSPCIG00000024538) #23	XRN2 (ENSPCIG00000001237) #24	ENSPCIG00000001346 #27	ENSPCIG00000008868 #27	INSM1 (ENSPCIG00000025810) #28	ENSPCIG00000034193	CFAP61 (ENSPCIG00000025813) #29	CRNKL1 (ENSPCIG00000025825) #30	NAA20 (ENSPCIG00000025955) #31	RIN2 (ENSPCIG00000020994) #32	SLC24A3 (ENSPCIG00000018234) #33	SCP2D1 (ENSPCIG00000019128) #34	ENSPCIG00000001009	DTD1 (ENSPCIG00000000993) #35
Common wonbat	MODERN SPECIES	1073											CD93 (ENSVURG00010005436) #17	THBD (ENSVURG00010005445) #18	SSTR4 (ENSVURG00010005456) #19	FOXA2 (ENSVURG00010005464) #20	PAX1 (ENSVURG00010005488) #21	NKX2-2 (ENSVURG00010005501) #22	NKX2-4 (ENSVURG00010005513) #23	XRN2 (ENSVURG00010005531) #24	KIZ (ENSVURG00010005599) #25	ENSVURG00010005678	RALGAPA2 (ENSVURG00010005756) #27	INSM1 (ENSVURG00010005820) #28	ENSVURG00010005834	ENSVURG00010005838	ENSVURG00010005844 #29	ENSVURG00010005874 #29	ENSVURG00010005888 #29	ENSVURG00010005903 #30	NAA20 (ENSVURG00010005948) #31	ENSVURG00010005965	RIN2 (ENSVURG00010005982) #32
Wallaby	MODERN SPECIES	3299																NKX2-2 (ENSMEUG00000014506) #22
Tasmanian devil	MODERN SPECIES	1	VSX1 (ENSSHAG00000027598)	ENSSHAG00000031963	ACSS1 (ENSSHAG00000004290)	APMAP (ENSSHAG00000002616)	ENSSHAG00000000722	SYNDIG1 (ENSSHAG00000026100)	ENSSHAG00000032132	ENSSHAG00000031598	NAPB (ENSSHAG00000022875) #14	ENSSHAG00000009367 #15	CD93 (ENSSHAG00000031195) #17	THBD (ENSSHAG00000028423) #18	SSTR4 (ENSSHAG00000012685) #19	FOXA2 (ENSSHAG00000014905) #20	PAX1 (ENSSHAG00000017556) #21	NKX2-2 (ENSSHAG00000004915) #22	NKX2-4 (ENSSHAG00000024664) #23	XRN2 (ENSSHAG00000023603) #24	KIZ (ENSSHAG00000027601) #25	RALGAPA2 (ENSSHAG00000011234) #27	CFAP61 (ENSSHAG00000013786) #29	ENSSHAG00000030457 #30	ENSSHAG00000022346 #31	ENSSHAG00000027541 #30	ENSSHAG00000025214 #31	RIN2 (ENSSHAG00000014834) #32	SLC24A3 (ENSSHAG00000015606) #33	SCP2D1 (ENSSHAG00000017843) #34	DTD1 (ENSSHAG00000028090) #35	SEC23B (ENSSHAG00000018083) #37	RBBP9 (ENSSHAG00000023516)
Opossum	MODERN SPECIES		VSX1 (ENSMODG00000006351)	ACSS1 (ENSMODG00000006345)	APMAP (ENSMODG00000006313)	ENSMODG00000006300	ENSMODG00000044809	SYNDIG1 (ENSMODG00000006293)	ENSMODG00000048042	NAPB (ENSMODG00000006277) #14	GZF1 (ENSMODG00000006238) #15	ENSMODG00000044175 #15	CD93 (ENSMODG00000006221) #17	ENSMODG00000023139 #18	SSTR4 (ENSMODG00000023138) #19	FOXA2 (ENSMODG00000006213) #20	PAX1 (ENSMODG00000006198) #21	NKX2-2 (ENSMODG00000006177) #22	NKX2-4 (ENSMODG00000006170) #23	XRN2 (ENSMODG00000006163) #24	ENSMODG00000040034	KIZ (ENSMODG00000006125) #25	ENSMODG00000006089 #27	ENSMODG00000036552	ENSMODG00000050875	ENSMODG00000043419 #27	INSM1 (ENSMODG00000006031) #28	CFAP61 (ENSMODG00000005981) #29	ENSMODG00000005961 #30	NAA20 (ENSMODG00000005931) #31	ENSMODG00000028620	RIN2 (ENSMODG00000005916) #32	SLC24A3 (ENSMODG00000005890) #33
Platypus	MODERN SPECIES		NT5C1B (ENSOANG00000007019)	OSR1 (ENSOANG00000045764)	ENSOANG00000007840	CST7 (ENSOANG00000042962)	SYNDIG1 (ENSOANG00000010870)	ENSOANG00000051113	NAPB (ENSOANG00000000251) #14	ENSOANG00000045902	GZF1 (ENSOANG00000038746) #15	ENSOANG00000022376 #15	ENSOANG00000041257 #17	ENSOANG00000015171	SSTR4 (ENSOANG00000037977) #19	FOXA2 (ENSOANG00000015108) #20	PAX1 (ENSOANG00000002008) #21	ENSOANG00000047729 #22	NKX2-4 (ENSOANG00000048651) #23	XRN2 (ENSOANG00000015673) #24	ENSOANG00000002851 #25	RALGAPA2 (ENSOANG00000002499) #27	INSM1 (ENSOANG00000038669) #28	CFAP61 (ENSOANG00000046492) #29	CRNKL1 (ENSOANG00000031667) #30	NAA20 (ENSOANG00000036301) #31	RIN2 (ENSOANG00000002281) #32	SLC24A3 (ENSOANG00000015699) #33	SCP2D1 (ENSOANG00000003673) #34	DTD1 (ENSOANG00000038993) #35	ENSOANG00000039827 #36	SEC23B (ENSOANG00000008750) #37	ENSOANG00000020618