Gnathostomata ANCESTRAL SPECIES 109 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 Euteleostomi ANCESTRAL SPECIES 226 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 Sarcopterygii ANCESTRAL SPECIES 122 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00940000163377.b Tetrapoda ANCESTRAL SPECIES 49 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00940000163377.b Amniota ANCESTRAL SPECIES 12 ENSGT00390000013444.a.b.a ENSGT00940000161448 ENSGT00390000001607 ENSGT01090000260080.a ENSGT00390000008327 ENSGT00940000154206.b ENSGT00390000014969 ENSGT00440000033970 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 Mammalia ANCESTRAL SPECIES 22 ENSGT00950000183148.b.b ENSGT01100000263540.A.a ENSGT00940000160793 ENSGT00940000158550 ENSGT00440000039984.a ENSGT00940000160277 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Theria ANCESTRAL SPECIES 13 ENSGT01100000263540.A.a ENSGT00940000160793 ENSGT00940000158550 ENSGT00440000039984.a ENSGT00940000160277 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000163249 #8 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Eutheria ANCESTRAL SPECIES 11 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Boreoeutheria ANCESTRAL SPECIES 17 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Euarchontoglires ANCESTRAL SPECIES 17 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Euarchontoglires_A ANCESTRAL SPECIES 16 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Glires ANCESTRAL SPECIES 17 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Rodentia ANCESTRAL SPECIES 18 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Rodentia_B ANCESTRAL SPECIES 13 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Myomorpha ANCESTRAL SPECIES 9 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Muroidea ANCESTRAL SPECIES 7 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Muroidea_A ANCESTRAL SPECIES 2 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Murinae ANCESTRAL SPECIES 1 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Rat MODERN SPECIES 13 Cst9l (ENSRNOG00000005162) #7 Cst13 (ENSRNOG00000005103) #8 Cst8 (ENSRNOG00000004989) #9 Cst12 (ENSRNOG00000004946) #10 LOC257643 (ENSRNOG00000004858) #11 Cst11 (ENSRNOG00000004808) #12 Cstl1 (ENSRNOG00000004779) #13 Napb (ENSRNOG00000004753) #14 Gzf1 (ENSRNOG00000004735) #15 Nxt1 (ENSRNOG00000004700) #16 Cd93 (ENSRNOG00000024799) #17 Thbd (ENSRNOG00000004687) #18 Sstr4 (ENSRNOG00000004641) #19 Foxa2 (ENSRNOG00000013133) #20 Pax1 (ENSRNOG00000024882) #21 Nkx2-2 (ENSRNOG00000012728) #22 Nkx2-4 (ENSRNOG00000012647) #23 Xrn2 (ENSRNOG00000011785) #24 Kiz (ENSRNOG00000025141) #25 ENSRNOG00000070752 #26 Ralgapa2 (ENSRNOG00000036964) #27 Insm1 (ENSRNOG00000068937) #28 AABR07054096.1 (ENSRNOG00000011028) #29 Crnkl1 (ENSRNOG00000010587) #30 Naa20 (ENSRNOG00000010523) #31 Rin2 (ENSRNOG00000010131) #32 Slc24a3 (ENSRNOG00000060687) #33 Scp2d1 (ENSRNOG00000009461) #34 Dtd1 (ENSRNOG00000008746) #35 Smim26 (ENSRNOG00000036971) #36 Sec23b (ENSRNOG00000008411) #37 Mus ANCESTRAL SPECIES 1 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Shrew mouse MODERN SPECIES 16 Cstdc2 (MGP_PahariEiJ_G0025860) ##7 Cst13 (MGP_PahariEiJ_G0025859) #8 Cst8 (MGP_PahariEiJ_G0025858) #9 Cst12 (MGP_PahariEiJ_G0025857) #10 Cstdc1 (MGP_PahariEiJ_G0025856) #11 Cst11 (MGP_PahariEiJ_G0025855) #12 Cstl1 (MGP_PahariEiJ_G0025854) #13 Napb (MGP_PahariEiJ_G0025853) #14 Gzf1 (MGP_PahariEiJ_G0025852) #15 Nxt1 (MGP_PahariEiJ_G0025851) #16 Cd93 (MGP_PahariEiJ_G0025850) #17 Thbd (MGP_PahariEiJ_G0025849) #18 Sstr4 (MGP_PahariEiJ_G0025848) #19 Foxa2 (MGP_PahariEiJ_G0025847) #20 Pax1 (MGP_PahariEiJ_G0025846) #21 Nkx2-2 (MGP_PahariEiJ_G0025845) #22 Nkx2-4 (MGP_PahariEiJ_G0025844) #23 Xrn2 (MGP_PahariEiJ_G0025843) #24 Kiz (MGP_PahariEiJ_G0025842) #25 Ralgapa2 (MGP_PahariEiJ_G0025841) #27 Insm1 (MGP_PahariEiJ_G0025840) #28 Cfap61 (MGP_PahariEiJ_G0025839) #29 Crnkl1 (MGP_PahariEiJ_G0025838) #30 Naa20 (MGP_PahariEiJ_G0025837) #31 Rin2 (MGP_PahariEiJ_G0025836) #32 MGP_PahariEiJ_G0025835 #33 Scp2d1 (MGP_PahariEiJ_G0025834) #34 Dtd1 (MGP_PahariEiJ_G0025833) #35 Smim26 (MGP_PahariEiJ_G0025832) #36 Sec23b (MGP_PahariEiJ_G0025831) #37 Rbbp9 (MGP_PahariEiJ_G0025830) Mus_A ANCESTRAL SPECIES ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00970000195442 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931.m #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c.c #37 Ryukyu mouse MODERN SPECIES 11 Cst9 (MGP_CAROLIEiJ_G0024417) #7 Cst13 (MGP_CAROLIEiJ_G0024416) #8 Cst8 (MGP_CAROLIEiJ_G0024415) #9 Cst12 (MGP_CAROLIEiJ_G0024414) #10 Cstdc1 (MGP_CAROLIEiJ_G0024413) #11 Cst11 (MGP_CAROLIEiJ_G0024412) #12 Cstl1 (MGP_CAROLIEiJ_G0024411) #13 Napb (MGP_CAROLIEiJ_G0024410) #14 Gzf1 (MGP_CAROLIEiJ_G0024409) #15 Nxt1 (MGP_CAROLIEiJ_G0024408) #16 Cd93 (MGP_CAROLIEiJ_G0024407) #17 Thbd (MGP_CAROLIEiJ_G0024406) #18 Sstr4 (MGP_CAROLIEiJ_G0024405) #19 Foxa2 (MGP_CAROLIEiJ_G0024404) #20 Pax1 (MGP_CAROLIEiJ_G0024403) #21 Nkx2-2 (MGP_CAROLIEiJ_G0024402) #22 Nkx2-4 (MGP_CAROLIEiJ_G0024401) #23 Xrn2 (MGP_CAROLIEiJ_G0024400) #24 MGP_CAROLIEiJ_G0024399 Kiz (MGP_CAROLIEiJ_G0024398) #25 Ralgapa2 (MGP_CAROLIEiJ_G0024397) #27 Insm1 (MGP_CAROLIEiJ_G0024396) #28 Cfap61 (MGP_CAROLIEiJ_G0024395) #29 Crnkl1 (MGP_CAROLIEiJ_G0024394) #30 Naa20 (MGP_CAROLIEiJ_G0024393) #31 Rin2 (MGP_CAROLIEiJ_G0024392) #32 MGP_CAROLIEiJ_G0024391 #33 Scp2d1 (MGP_CAROLIEiJ_G0024390) #34 Dtd1 (MGP_CAROLIEiJ_G0024389) #35 Smim26 (MGP_CAROLIEiJ_G0024388) #36 Sec23b (MGP_CAROLIEiJ_G0024387) #37 Mus_B ANCESTRAL SPECIES 1 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00970000195442 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931.m #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c.c #37 Mouse MODERN SPECIES 11 Cst9 (ENSMUSG00000027445) #7 Cst13 (ENSMUSG00000036924) #8 Cst8 (ENSMUSG00000027442) #9 Cst12 (ENSMUSG00000027443) #10 Cstdc1 (ENSMUSG00000027444) #11 Cst11 (ENSMUSG00000036958) #12 Cstl1 (ENSMUSG00000055177) #13 Napb (ENSMUSG00000027438) #14 Gzf1 (ENSMUSG00000027439) #15 Nxt1 (ENSMUSG00000036992) #16 Cd93 (ENSMUSG00000027435) #17 Thbd (ENSMUSG00000074743) #18 Sstr4 (ENSMUSG00000037014) #19 Foxa2 (ENSMUSG00000037025) #20 Pax1 (ENSMUSG00000037034) #21 Nkx2-2 (ENSMUSG00000027434) #22 Nkx2-4 (ENSMUSG00000054160) #23 Xrn2 (ENSMUSG00000027433) #24 Kiz (ENSMUSG00000074749) #25 Ralgapa2 (ENSMUSG00000037110) #27 Insm1 (ENSMUSG00000068154) #28 Cfap61 (ENSMUSG00000037143) #29 Crnkl1 (ENSMUSG00000001767) #30 Naa20 (ENSMUSG00000002728) #31 Rin2 (ENSMUSG00000001768) #32 Slc24a3 (ENSMUSG00000063873) #33 Scp2d1 (ENSMUSG00000027431) #34 Dtd1 (ENSMUSG00000027430) #35 Smim26 (ENSMUSG00000074754) #36 Sec23b (ENSMUSG00000027429) #37 Rbbp9 (ENSMUSG00000027428) Mus_C ANCESTRAL SPECIES ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00970000195442 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931.m #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c.c #37 ENSGT00390000014861 spretus MODERN SPECIES 11 Cst9 (MGP_SPRETEiJ_G0025335) #7 Cst13 (MGP_SPRETEiJ_G0025334) #8 Cst8 (MGP_SPRETEiJ_G0025333) #9 Cst12 (MGP_SPRETEiJ_G0025332) #10 Cstdc1 (MGP_SPRETEiJ_G0025331) #11 Cst11 (MGP_SPRETEiJ_G0025330) #12 Cstl1 (MGP_SPRETEiJ_G0025329) #13 Napb (MGP_SPRETEiJ_G0025328) #14 Gzf1 (MGP_SPRETEiJ_G0025327) #15 Nxt1 (MGP_SPRETEiJ_G0025326) #16 Cd93 (MGP_SPRETEiJ_G0025325) #17 Thbd (MGP_SPRETEiJ_G0025324) #18 Sstr4 (MGP_SPRETEiJ_G0025323) #19 Foxa2 (MGP_SPRETEiJ_G0025322) #20 Pax1 (MGP_SPRETEiJ_G0025321) #21 Nkx2-2 (MGP_SPRETEiJ_G0025320) #22 Nkx2-4 (MGP_SPRETEiJ_G0025319) #23 Xrn2 (MGP_SPRETEiJ_G0025318) #24 MGP_SPRETEiJ_G0025317 Kiz (MGP_SPRETEiJ_G0025316) #25 Ralgapa2 (MGP_SPRETEiJ_G0025315) #27 Insm1 (MGP_SPRETEiJ_G0025314) #28 Cfap61 (MGP_SPRETEiJ_G0025313) #29 Crnkl1 (MGP_SPRETEiJ_G0025312) #30 Naa20 (MGP_SPRETEiJ_G0025311) #31 Rin2 (MGP_SPRETEiJ_G0025310) #32 Slc24a3 (MGP_SPRETEiJ_G0025309) #33 Dtd1 (MGP_SPRETEiJ_G0025308) #35 Smim26 (MGP_SPRETEiJ_G0025307) #36 Sec23b (MGP_SPRETEiJ_G0025306) #37 Rbbp9 (MGP_SPRETEiJ_G0025305) Steppe mouse MODERN SPECIES 17 Pax1 (ENSMSIG00000015104) #21 ENSMSIG00000015077 ENSMSIG00000015060 #22 Nkx2-4 (ENSMSIG00000015047) #23 Xrn2 (ENSMSIG00000014908) #24 Kiz (ENSMSIG00000014848) #25 Ralgapa2 (ENSMSIG00000014327) #27 ENSMSIG00000014314 #28 Cfap61 (ENSMSIG00000014190) #29 Crnkl1 (ENSMSIG00000014156) #30 Naa20 (ENSMSIG00000014125) #31 Rin2 (ENSMSIG00000014047) #32 ENSMSIG00000014037 Slc24a3 (ENSMSIG00000013851) #33 ENSMSIG00000013826 Cricetidae ANCESTRAL SPECIES 5 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Cricetinae ANCESTRAL SPECIES 1 ENSGT00940000161877.c.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Chinese hamster chok1gshd MODERN SPECIES 188 ENSCGRG00001017812 #7 Cst13 (ENSCGRG00001024079) #8 Cst8 (ENSCGRG00001020750) #9 Cst12 (ENSCGRG00001024036) #10 Cstdc1 (ENSCGRG00001024407) #11 Cst11 (ENSCGRG00001004859) #12 Cstl1 (ENSCGRG00001006313) #13 Napb (ENSCGRG00001015884) #14 Gzf1 (ENSCGRG00001003944) #15 ENSCGRG00001007062 #16 Cd93 (ENSCGRG00001016628) #17 Thbd (ENSCGRG00001010215) #18 Sstr4 (ENSCGRG00001010896) #19 Foxa2 (ENSCGRG00001000494) #20 Pax1 (ENSCGRG00001009223) #21 Nkx2-2 (ENSCGRG00001013924) #22 ENSCGRG00001016394 Nkx2-4 (ENSCGRG00001002742) #23 Xrn2 (ENSCGRG00001010676) #24 Kiz (ENSCGRG00001020800) #25 Ralgapa2 (ENSCGRG00001024249) #27 Insm1 (ENSCGRG00001011430) #28 Cfap61 (ENSCGRG00001022702) #29 Slc24a3 (ENSCGRG00001004364) #33 Scp2d1 (ENSCGRG00001008412) #34 Dtd1 (ENSCGRG00001008221) #35 Smim26 (ENSCGRG00001010844) #36 Sec23b (ENSCGRG00001020368) #37 Rbbp9 (ENSCGRG00001022430) Polr3f (ENSCGRG00001002032) Dzank1 (ENSCGRG00001019385) Golden Hamster MODERN SPECIES 650 Syndig1 (ENSMAUG00000012485) ENSMAUG00000013001 Cst10 (ENSMAUG00000020427) Cst3 (ENSMAUG00000012476) Cstdc2 (ENSMAUG00000014409) ##7 Cst9 (ENSMAUG00000012174) #7 Cst13 (ENSMAUG00000021851) #8 Cst12 (ENSMAUG00000010970) #10 Napb (ENSMAUG00000018004) #14 Gzf1 (ENSMAUG00000019656) #15 Nxt1 (ENSMAUG00000004141) #16 Cd93 (ENSMAUG00000019441) #17 Sstr4 (ENSMAUG00000008430) #19 Foxa2 (ENSMAUG00000016457) #20 Pax1 (ENSMAUG00000019674) #21 Nkx2-2 (ENSMAUG00000004347) #22 Nkx2-4 (ENSMAUG00000013928) #23 Xrn2 (ENSMAUG00000021842) #24 Kiz (ENSMAUG00000012933) #25 Ralgapa2 (ENSMAUG00000000917) #27 Insm1 (ENSMAUG00000008643) #28 Cfap61 (ENSMAUG00000021388) #29 ENSMAUG00000018263 ENSMAUG00000014865 Crnkl1 (ENSMAUG00000020764) #30 Naa20 (ENSMAUG00000016403) #31 Rin2 (ENSMAUG00000010319) #32 Slc24a3 (ENSMAUG00000014182) #33 Scp2d1 (ENSMAUG00000008663) #34 Dtd1 (ENSMAUG00000021240) #35 Smim26 (ENSMAUG00000021093) #36 Cricetidae_B ANCESTRAL SPECIES 4 ENSGT00940000161877.c.a ##7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Northern American deer mouse MODERN SPECIES 17 Cst13 (ENSPEMG00000005338) #8 Cst8 (ENSPEMG00000030932) #9 Cst12 (ENSPEMG00000000557) #10 Cstdc1 (ENSPEMG00000018705) #11 Cst11 (ENSPEMG00000000143) #12 Cstl1 (ENSPEMG00000015396) #13 Napb (ENSPEMG00000014658) #14 Gzf1 (ENSPEMG00000011285) #15 Nxt1 (ENSPEMG00000010397) #16 Cd93 (ENSPEMG00000009909) #17 Thbd (ENSPEMG00000013258) #18 Sstr4 (ENSPEMG00000013404) #19 Foxa2 (ENSPEMG00000018383) #20 ENSPEMG00000013352 Pax1 (ENSPEMG00000013032) #21 Nkx2-2 (ENSPEMG00000031205) #22 Xrn2 (ENSPEMG00000000111) #24 Kiz (ENSPEMG00000019926) #25 ENSPEMG00000018301 Ralgapa2 (ENSPEMG00000015207) #27 Insm1 (ENSPEMG00000011704) #28 Cfap61 (ENSPEMG00000019999) #29 Crnkl1 (ENSPEMG00000000073) #30 Naa20 (ENSPEMG00000019944) #31 Rin2 (ENSPEMG00000007218) #32 Slc24a3 (ENSPEMG00000019985) #33 ENSPEMG00000027872 Scp2d1 (ENSPEMG00000012681) #34 Dtd1 (ENSPEMG00000019439) #35 Smim26 (ENSPEMG00000025969) #36 Sec23b (ENSPEMG00000019699) #37 Prairie vole MODERN SPECIES 86 Cst13 (ENSMOCG00000012990) #8 Cst8 (ENSMOCG00000020831) #9 Cst12 (ENSMOCG00000013277) #10 Cstdc1 (ENSMOCG00000015424) #11 Cst11 (ENSMOCG00000016678) #12 Cstl1 (ENSMOCG00000019330) #13 Napb (ENSMOCG00000000502) #14 Gzf1 (ENSMOCG00000017816) #15 Nxt1 (ENSMOCG00000018712) #16 ENSMOCG00000014565 Cd93 (ENSMOCG00000008988) #17 Thbd (ENSMOCG00000004558) #18 Sstr4 (ENSMOCG00000004743) #19 Foxa2 (ENSMOCG00000017025) #20 Pax1 (ENSMOCG00000000474) #21 Nkx2-2 (ENSMOCG00000016851) #22 Nkx2-4 (ENSMOCG00000012451) #23 Xrn2 (ENSMOCG00000012588) #24 Kiz (ENSMOCG00000022509) #25 ENSMOCG00000020632 Ralgapa2 (ENSMOCG00000015663) #27 Insm1 (ENSMOCG00000010418) #28 Cfap61 (ENSMOCG00000001829) #29 ENSMOCG00000000681 #30 ENSMOCG00000021892 #31 Rin2 (ENSMOCG00000011014) #32 Slc24a3 (ENSMOCG00000014059) #33 Scp2d1 (ENSMOCG00000005227) #34 Dtd1 (ENSMOCG00000001062) #35 ENSMOCG00000016611 #36 Sec23b (ENSMOCG00000003908) #37 Upper Galilee mountains blind mole rat MODERN SPECIES 450 Pax1 (ENSNGAG00000011690) #21 Nkx2-2 (ENSNGAG00000015181) #22 Nkx2-4 (ENSNGAG00000009374) #23 Xrn2 (ENSNGAG00000018138) #24 Kiz (ENSNGAG00000013505) #25 ENSNGAG00000015751 #27 ENSNGAG00000011107 #27 Insm1 (ENSNGAG00000020652) #28 Cfap61 (ENSNGAG00000020907) #29 Crnkl1 (ENSNGAG00000023097) #30 Naa20 (ENSNGAG00000014784) #31 Rin2 (ENSNGAG00000009777) #32 Slc24a3 (ENSNGAG00000011154) #33 Lesser Egyptian jerboa MODERN SPECIES 159 Cst3 (ENSJJAG00000013565) Cst9 (ENSJJAG00000013510) #7 Cst13 (ENSJJAG00000013369) #8 Cst8 (ENSJJAG00000013212) #9 Cst12 (ENSJJAG00000012500) #10 Cstdc1 (ENSJJAG00000012315) #11 Cstl1 (ENSJJAG00000011653) #13 Napb (ENSJJAG00000010872) #14 Gzf1 (ENSJJAG00000008172) #15 ENSJJAG00000012022 #16 Cd93 (ENSJJAG00000007591) #17 Sstr4 (ENSJJAG00000023336) #19 Foxa2 (ENSJJAG00000023228) #20 Pax1 (ENSJJAG00000023177) #21 Nkx2-2 (ENSJJAG00000022426) #22 Nkx2-4 (ENSJJAG00000022335) #23 Xrn2 (ENSJJAG00000022128) #24 Kiz (ENSJJAG00000021546) #25 ENSJJAG00000020834 ENSJJAG00000020710 #27 ENSJJAG00000020467 #27 Insm1 (ENSJJAG00000020276) #28 Cfap61 (ENSJJAG00000018922) #29 Crnkl1 (ENSJJAG00000016926) #30 Naa20 (ENSJJAG00000016004) #31 ENSJJAG00000015745 #32 Slc24a3 (ENSJJAG00000015385) #33 Dtd1 (ENSJJAG00000014379) #35 Sec23b (ENSJJAG00000018722) #37 Rbbp9 (ENSJJAG00000017816) Kangaroo rat MODERN SPECIES 418 Apmap (ENSDORG00000025391) Cst7 (ENSDORG00000005298) Syndig1 (ENSDORG00000003111) ENSDORG00000008948 Cst3 (ENSDORG00000027673) Cst13 (ENSDORG00000027228) #8 Cst8 (ENSDORG00000011859) #9 Cst12 (ENSDORG00000023744) #10 Napb (ENSDORG00000011856) #14 Gzf1 (ENSDORG00000011855) #15 Nxt1 (ENSDORG00000024690) #16 Cd93 (ENSDORG00000028704) #17 Sstr4 (ENSDORG00000010486) #19 Foxa2 (ENSDORG00000027269) #20 Pax1 (ENSDORG00000016051) #21 Nkx2-2 (ENSDORG00000007972) #22 Nkx2-4 (ENSDORG00000023542) #23 Xrn2 (ENSDORG00000005434) #24 ENSDORG00000024554 #27 ENSDORG00000025962 #27 Insm1 (ENSDORG00000009864) #28 ENSDORG00000000395 ENSDORG00000029623 #29 ENSDORG00000024717 #29 ENSDORG00000000394 #30 Naa20 (ENSDORG00000028339) #31 Rin2 (ENSDORG00000000392) #32 Slc24a3 (ENSDORG00000008187) #33 Scp2d1 (ENSDORG00000002960) #34 Dtd1 (ENSDORG00000006940) #35 Sec23b (ENSDORG00000014203) #37 Rodentia_A ANCESTRAL SPECIES 17 ENSGT00940000161877.c.a ##7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Sciuridae ANCESTRAL SPECIES 13 ENSGT00940000161877.c.a ##7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Marmotini ANCESTRAL SPECIES 5 ENSGT00940000161877.c.a ##7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00390000007696.e.a.a.a ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Marmotini_b ANCESTRAL SPECIES 140 ENSGT00940000161877.c.a ##7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00390000007696.e.a.a.a Squirrel MODERN SPECIES 220 ENSSTOG00000004129 #8 ENSSTOG00000020102 CST8 (ENSSTOG00000004122) #9 ENSSTOG00000024532 #10 ENSSTOG00000021841 #11 CST11 (ENSSTOG00000004847) #12 CSTL1 (ENSSTOG00000024563) #13 NAPB (ENSSTOG00000022350) #14 ENSSTOG00000030626 GZF1 (ENSSTOG00000009820) #15 NXT1 (ENSSTOG00000026331) #16 CD93 (ENSSTOG00000024530) #17 SSTR4 (ENSSTOG00000021697) #19 FOXA2 (ENSSTOG00000020150) #20 PAX1 (ENSSTOG00000003000) #21 NKX2-2 (ENSSTOG00000021450) #22 XRN2 (ENSSTOG00000000589) #24 KIZ (ENSSTOG00000007449) #25 Arctic ground squirrel MODERN SPECIES 114 CST11 (ENSUPAG00010009858) #12 CSTL1 (ENSUPAG00010009856) #13 ENSUPAG00010009855 ENSUPAG00010009850 NAPB (ENSUPAG00010009788) #14 GZF1 (ENSUPAG00010009780) #15 NXT1 (ENSUPAG00010009776) #16 ENSUPAG00010009772 ENSUPAG00010009759 CD93 (ENSUPAG00010009758) #17 THBD (ENSUPAG00010009753) #18 SSTR4 (ENSUPAG00010009751) #19 FOXA2 (ENSUPAG00010009738) #20 ENSUPAG00010009726 PAX1 (ENSUPAG00010009718) #21 NKX2-2 (ENSUPAG00010009710) #22 NKX2-4 (ENSUPAG00010009706) #23 XRN2 (ENSUPAG00010009667) #24 KIZ (ENSUPAG00010009237) #25 ENSUPAG00010009220 Alpin marmot MODERN SPECIES CST8 (ENSMMMG00000004504) #9 ENSMMMG00000004491 #10 ENSMMMG00000004483 #11 CST11 (ENSMMMG00000004467) #12 CSTL1 (ENSMMMG00000004456) #13 ENSMMMG00000004433 NAPB (ENSMMMG00000004419) #14 GZF1 (ENSMMMG00000004407) #15 NXT1 (ENSMMMG00000004405) #16 ENSMMMG00000004398 CD93 (ENSMMMG00000004395) #17 THBD (ENSMMMG00000004391) #18 SSTR4 (ENSMMMG00000004385) #19 FOXA2 (ENSMMMG00000004350) #20 PAX1 (ENSMMMG00000004326) #21 NKX2-2 (ENSMMMG00000004284) #22 XRN2 (ENSMMMG00000004161) #24 KIZ (ENSMMMG00000003881) #25 ENSMMMG00000003871 RALGAPA2 (ENSMMMG00000003453) #27 ENSMMMG00000003417 ENSMMMG00000003408 #29 ENSMMMG00000003290 #29 CRNKL1 (ENSMMMG00000003244) #30 NAA20 (ENSMMMG00000003240) #31 RIN2 (ENSMMMG00000003172) #32 SLC24A3 (ENSMMMG00000003105) #33 SCP2D1 (ENSMMMG00000003079) #34 ENSMMMG00000003073 DTD1 (ENSMMMG00000003060) #35 SMIM26 (ENSMMMG00000003045) #36 Eurasian red squirrel MODERN SPECIES 11 ENSSVLG00005000133 #10 ENSSVLG00005000139 #11 CST11 (ENSSVLG00005000162) #12 CSTL1 (ENSSVLG00005000168) #13 NAPB (ENSSVLG00005000227) #14 GZF1 (ENSSVLG00005000288) #15 ENSSVLG00005000304 #16 ENSSVLG00005000317 #16 CD93 (ENSSVLG00005000330) #17 THBD (ENSSVLG00005000349) #18 SSTR4 (ENSSVLG00005000359) #19 ENSSVLG00005000368 FOXA2 (ENSSVLG00005000389) #20 ENSSVLG00005000403 PAX1 (ENSSVLG00005000421) #21 NKX2-2 (ENSSVLG00005000441) #22 NKX2-4 (ENSSVLG00005000455) #23 XRN2 (ENSSVLG00005000470) #24 KIZ (ENSSVLG00005000513) #25 ENSSVLG00005000546 RALGAPA2 (ENSSVLG00005000611) #27 INSM1 (ENSSVLG00005000689) #28 CFAP61 (ENSSVLG00005000731) #29 ENSSVLG00005000777 CRNKL1 (ENSSVLG00005000792) #30 NAA20 (ENSSVLG00005000837) #31 RIN2 (ENSSVLG00005000879) #32 SLC24A3 (ENSSVLG00005000927) #33 SCP2D1 (ENSSVLG00005000950) #34 DTD1 (ENSSVLG00005000962) #35 ENSSVLG00005000978 Hystricomorpha ANCESTRAL SPECIES 10 ENSGT00940000154755.c.b ENSGT00940000154755.c.a ENSGT00940000161877.d ##7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987.n.a #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 ENSGT00390000009679 Hystricomorpha_a ANCESTRAL SPECIES 8 ENSGT00940000154755.c.b.d ENSGT00940000154755.c.a ENSGT00940000161877.d ##7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987.n.a #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 ENSGT00390000009679 Hystricomorpha_b ANCESTRAL SPECIES 31 ENSGT00940000154755.c.b.c ENSGT00940000154755.c.b.d ENSGT00940000154755.c.a ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987.n.a #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 ENSGT00390000009679 Long-tailed chinchilla MODERN SPECIES 122 SYNDIG1 (ENSCLAG00000012586) ENSCLAG00000012454 ENSCLAG00000015899 ENSCLAG00000017066 #8 ENSCLAG00000015212 #9 ENSCLAG00000015474 #10 ENSCLAG00000011384 #12 CSTL1 (ENSCLAG00000012446) #13 NAPB (ENSCLAG00000011540) #14 GZF1 (ENSCLAG00000014714) #15 NXT1 (ENSCLAG00000012493) #16 CD93 (ENSCLAG00000012062) #17 THBD (ENSCLAG00000011994) #18 FOXA2 (ENSCLAG00000014548) #20 PAX1 (ENSCLAG00000016362) #21 NKX2-2 (ENSCLAG00000016430) #22 XRN2 (ENSCLAG00000013419) #24 KIZ (ENSCLAG00000012565) #25 RALGAPA2 (ENSCLAG00000012502) #27 CFAP61 (ENSCLAG00000014155) #29 CRNKL1 (ENSCLAG00000013859) #30 NAA20 (ENSCLAG00000014313) #31 RIN2 (ENSCLAG00000015234) #32 SLC24A3 (ENSCLAG00000015547) #33 DTD1 (ENSCLAG00000015302) #35 SEC23B (ENSCLAG00000014924) #37 RBBP9 (ENSCLAG00000014851) POLR3F (ENSCLAG00000016296) DZANK1 (ENSCLAG00000013160) ZNF133 (ENSCLAG00000015115) KAT14 (ENSCLAG00000012590) Degu MODERN SPECIES 114 CST3 (ENSODEG00000012334) ENSODEG00000010611 #8 ENSODEG00000010448 #9 ENSODEG00000012595 #10 CST11 (ENSODEG00000013274) #12 CSTL1 (ENSODEG00000010719) #13 NAPB (ENSODEG00000011065) #14 GZF1 (ENSODEG00000013020) #15 NXT1 (ENSODEG00000019900) #16 CD93 (ENSODEG00000012518) #17 THBD (ENSODEG00000010709) #18 FOXA2 (ENSODEG00000011162) #20 PAX1 (ENSODEG00000012427) #21 ENSODEG00000019878 ENSODEG00000019885 NKX2-2 (ENSODEG00000012371) #22 ENSODEG00000012687 NKX2-4 (ENSODEG00000010842) #23 ENSODEG00000010745 #24 ENSODEG00000011188 KIZ (ENSODEG00000011491) #25 RALGAPA2 (ENSODEG00000011023) #27 INSM1 (ENSODEG00000020028) #28 ENSODEG00000011346 ENSODEG00000012124 #29 ENSODEG00000012675 #29 CRNKL1 (ENSODEG00000012175) #30 NAA20 (ENSODEG00000011704) #31 RIN2 (ENSODEG00000012000) #32 SLC24A3 (ENSODEG00000012016) #33 DTD1 (ENSODEG00000012785) #35 Guinea pig MODERN SPECIES 8 ENSCPOG00000030984 ENSCPOG00000030716 ENSCPOG00000025294 ##7 ENSCPOG00000021926 #8 CST8 (ENSCPOG00000005550) #9 ENSCPOG00000025993 #10 ENSCPOG00000003822 #12 CSTL1 (ENSCPOG00000008734) #13 NAPB (ENSCPOG00000039063) #14 GZF1 (ENSCPOG00000010790) #15 NXT1 (ENSCPOG00000008817) #16 CD93 (ENSCPOG00000010252) #17 THBD (ENSCPOG00000030575) #18 FOXA2 (ENSCPOG00000033370) #20 PAX1 (ENSCPOG00000002886) #21 NKX2-2 (ENSCPOG00000000408) #22 XRN2 (ENSCPOG00000009407) #24 KIZ (ENSCPOG00000005683) #25 RALGAPA2 (ENSCPOG00000001602) #27 ENSCPOG00000038064 ENSCPOG00000039658 #29 ENSCPOG00000001594 #29 CRNKL1 (ENSCPOG00000004418) #30 NAA20 (ENSCPOG00000001593) #31 RIN2 (ENSCPOG00000013179) #32 SLC24A3 (ENSCPOG00000011970) #33 DTD1 (ENSCPOG00000002416) #35 SEC23B (ENSCPOG00000002406) #37 RBBP9 (ENSCPOG00000036556) POLR3F (ENSCPOG00000002400) DZANK1 (ENSCPOG00000002397) Naked mole-rat female MODERN SPECIES 6 ENSHGLG00000044421 ENSHGLG00000048121 ENSHGLG00000014789 ENSHGLG00000016940 ENSHGLG00000017168 ##7 ENSHGLG00000011435 #8 CST8 (ENSHGLG00000011126) #9 ENSHGLG00000009572 #10 CST11 (ENSHGLG00000009307) #12 CSTL1 (ENSHGLG00000016858) #13 NAPB (ENSHGLG00000016842) #14 ENSHGLG00000037985 #15 ENSHGLG00000043445 FOXA2 (ENSHGLG00000048805) #20 PAX1 (ENSHGLG00000015866) #21 NKX2-2 (ENSHGLG00000048629) #22 NKX2-4 (ENSHGLG00000008824) #23 XRN2 (ENSHGLG00000014831) #24 KIZ (ENSHGLG00000014057) #25 ENSHGLG00000037468 ENSHGLG00000016477 #27 ENSHGLG00000047697 ENSHGLG00000013572 #29 ENSHGLG00000035992 ENSHGLG00000001178 ENSHGLG00000049828 ENSHGLG00000001156 CST7 (ENSHGLG00000001075) APMAP (ENSHGLG00000045360) ENSHGLG00000042834 ENSHGLG00000034236 Lagomorpha ANCESTRAL SPECIES 57 ENSGT00940000154755.c.a ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.B #11 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 ENSGT00390000009679 ENSGT00390000000549 ENSGT00940000162260 Rabbit MODERN SPECIES 15 ENSOCUG00000021033 #7 ENSOCUG00000024585 #7 ENSOCUG00000029526 #7 ENSOCUG00000026263 #8 CST8 (ENSOCUG00000024979) #9 ENSOCUG00000027150 #11 CSTL1 (ENSOCUG00000024430) #13 ENSOCUG00000025538 NAPB (ENSOCUG00000009263) #14 ENSOCUG00000025214 #15 NXT1 (ENSOCUG00000025924) #16 ENSOCUG00000024138 CD93 (ENSOCUG00000014812) #17 FOXA2 (ENSOCUG00000007368) #20 PAX1 (ENSOCUG00000003276) #21 NKX2-2 (ENSOCUG00000007166) #22 ENSOCUG00000024195 XRN2 (ENSOCUG00000013468) #24 KIZ (ENSOCUG00000013848) #25 RALGAPA2 (ENSOCUG00000017951) #27 CFAP61 (ENSOCUG00000015506) #29 CRNKL1 (ENSOCUG00000015484) #30 NAA20 (ENSOCUG00000015481) #31 RIN2 (ENSOCUG00000015450) #32 SLC24A3 (ENSOCUG00000009833) #33 ENSOCUG00000035674 SCP2D1 (ENSOCUG00000010991) #34 DTD1 (ENSOCUG00000010988) #35 ENSOCUG00000037347 SEC23B (ENSOCUG00000015079) #37 ENSOCUG00000027382 Tree shrew MODERN SPECIES 9962 NKX2-2 (ENSTBEG00000015943) #22 Primates ANCESTRAL SPECIES 17 ENSGT00940000154755.c.a ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Strepsirrhini ANCESTRAL SPECIES 12 ENSGT00940000154755.c.a ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Lemuriformes ANCESTRAL SPECIES 44 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000164098 ENSGT00940000162294 #9 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c.b #37 ENSGT00390000014861 ENSGT00390000009679 Mouse lemur MODERN SPECIES 9 CST7 (ENSMICG00000002037) SYNDIG1 (ENSMICG00000027578) ENSMICG00000032368 ENSMICG00000043235 ENSMICG00000004617 CST9 (ENSMICG00000047052) CST8 (ENSMICG00000017905) #9 CST11 (ENSMICG00000017904) #12 CSTL1 (ENSMICG00000017903) #13 NAPB (ENSMICG00000017902) #14 GZF1 (ENSMICG00000046070) #15 NXT1 (ENSMICG00000044853) #16 CD93 (ENSMICG00000017898) #17 FOXA2 (ENSMICG00000030588) #20 PAX1 (ENSMICG00000016968) #21 NKX2-2 (ENSMICG00000045009) #22 NKX2-4 (ENSMICG00000032695) #23 XRN2 (ENSMICG00000008126) #24 KIZ (ENSMICG00000008114) #25 RALGAPA2 (ENSMICG00000006077) #27 INSM1 (ENSMICG00000037992) #28 CFAP61 (ENSMICG00000006057) #29 CRNKL1 (ENSMICG00000006048) #30 ENSMICG00000006044 #31 RIN2 (ENSMICG00000006035) #32 SLC24A3 (ENSMICG00000006014) #33 DTD1 (ENSMICG00000010771) #35 ENSMICG00000010750 #37 ENSMICG00000042283 #37 RBBP9 (ENSMICG00000047808) POLR3F (ENSMICG00000044519) Lemuriformes_a ANCESTRAL SPECIES 137 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000164098 ENSGT00940000162294 #9 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c.b #37 ENSGT00390000014861 ENSGT00390000009679 Greater bamboo lemur MODERN SPECIES 878 ENSPSMG00000008949 #7 ENSPSMG00000008941 #8 CST8 (ENSPSMG00000008931) #9 ENSPSMG00000008923 #11 CST11 (ENSPSMG00000008919) #12 CSTL1 (ENSPSMG00000008917) #13 NAPB (ENSPSMG00000008819) #14 GZF1 (ENSPSMG00000008681) #15 NXT1 (ENSPSMG00000008668) #16 CD93 (ENSPSMG00000008660) #17 THBD (ENSPSMG00000008649) #18 SSTR4 (ENSPSMG00000008634) #19 FOXA2 (ENSPSMG00000008622) #20 PAX1 (ENSPSMG00000008610) #21 NKX2-2 (ENSPSMG00000008596) #22 NKX2-4 (ENSPSMG00000008590) #23 XRN2 (ENSPSMG00000008572) #24 KIZ (ENSPSMG00000008514) #25 ENSPSMG00000008491 RALGAPA2 (ENSPSMG00000008474) #27 INSM1 (ENSPSMG00000008427) #28 Coquerels sifaka MODERN SPECIES 560 ENSPCOG00000018222 ENSPCOG00000001285 CST3 (ENSPCOG00000027602) CST9L (ENSPCOG00000008034) #7 CST8 (ENSPCOG00000017881) #9 CST11 (ENSPCOG00000025724) #12 CSTL1 (ENSPCOG00000016553) #13 NAPB (ENSPCOG00000022495) #14 GZF1 (ENSPCOG00000024180) #15 NXT1 (ENSPCOG00000025624) #16 CD93 (ENSPCOG00000022300) #17 FOXA2 (ENSPCOG00000001633) #20 PAX1 (ENSPCOG00000027636) #21 NKX2-2 (ENSPCOG00000016151) #22 Bushbaby MODERN SPECIES 251 NAPB (ENSOGAG00000012607) #14 GZF1 (ENSOGAG00000028389) #15 NXT1 (ENSOGAG00000000717) #16 CD93 (ENSOGAG00000017109) #17 THBD (ENSOGAG00000026061) #18 SSTR4 (ENSOGAG00000017105) #19 ENSOGAG00000025509 FOXA2 (ENSOGAG00000033297) #20 PAX1 (ENSOGAG00000033162) #21 NKX2-2 (ENSOGAG00000029474) #22 ENSOGAG00000025951 NKX2-4 (ENSOGAG00000024342) #23 XRN2 (ENSOGAG00000001068) #24 KIZ (ENSOGAG00000010591) #25 RALGAPA2 (ENSOGAG00000011557) #27 INSM1 (ENSOGAG00000034802) #28 ENSOGAG00000031837 CFAP61 (ENSOGAG00000011546) #29 CRNKL1 (ENSOGAG00000011544) #30 NAA20 (ENSOGAG00000011542) #31 RIN2 (ENSOGAG00000011531) #32 SLC24A3 (ENSOGAG00000026410) #33 SCP2D1 (ENSOGAG00000004222) #34 DTD1 (ENSOGAG00000007972) #35 ENSOGAG00000031912 #36 Haplorrhini ANCESTRAL SPECIES 13 ENSGT00940000164098 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Tarsier MODERN SPECIES 6553 NKX2-2 (ENSTSYG00000035825) #22 Simiiformes ANCESTRAL SPECIES 18 ENSGT00940000164098 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Platyrrhini ANCESTRAL SPECIES 11 ENSGT00940000164098 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861.a ENSGT00390000009679 ENSGT00390000000549 Cebidae ANCESTRAL SPECIES 13 ENSGT00940000164098 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861.a ENSGT00390000009679 ENSGT00390000000549 Marmoset DUPLICATION Marmoset MODERN SPECIES 17 CST8 (ENSCJAG00000000697) #9 ENSCJAG00000074097 #10 CST11 (ENSCJAG00000080392) #12 CSTL1 (ENSCJAG00000041540) #13 NAPB (ENSCJAG00000000712) #14 GZF1 (ENSCJAG00000000733) #15 NXT1 (ENSCJAG00000044836) #16 CD93 (ENSCJAG00000005796) #17 THBD (ENSCJAG00000005795) #18 FOXA2 (ENSCJAG00000005785) #20 ENSCJAG00000070048 ENSCJAG00000075555 PAX1 (ENSCJAG00000005773) #21 ENSCJAG00000070559 ENSCJAG00000076879 ENSCJAG00000051781 #22 ENSCJAG00000081459 NKX2-4 (ENSCJAG00000040336) #23 XRN2 (ENSCJAG00000005611) #24 KIZ (ENSCJAG00000005568) #25 RALGAPA2 (ENSCJAG00000005471) #27 INSM1 (ENSCJAG00000040556) #28 CFAP61 (ENSCJAG00000005444) #29 CRNKL1 (ENSCJAG00000005393) #30 ENSCJAG00000005377 #31 RIN2 (ENSCJAG00000005342) #32 SLC24A3 (ENSCJAG00000005325) #33 DTD1 (ENSCJAG00000005306) #35 ENSCJAG00000086632 SEC23B (ENSCJAG00000005179) #37 RBBP9 (ENSCJAG00000005170) Marmoset MODERN SPECIES ENSCJAG00000035362 SPIN1 (ENSCJAG00000038940) NXNL2 (ENSCJAG00000040941) ENSCJAG00000045436 S1PR3 (ENSCJAG00000045198) SHC3 (ENSCJAG00000011207) CKS2 (ENSCJAG00000082907) SECISBP2 (ENSCJAG00000007806) SEMA4D (ENSCJAG00000007883) GADD45G (ENSCJAG00000075792) ENSCJAG00000086138 ENSCJAG00000073981 NFIL3 (ENSCJAG00000005728) ENSCJAG00000005695 SYK (ENSCJAG00000005666) ENSCJAG00000062354 #22 DIRAS2 (ENSCJAG00000039042) ENSCJAG00000051243 ENSCJAG00000072229 ENSCJAG00000005635 DAPK1 (ENSCJAG00000005569) ENSCJAG00000074564 GAS1 (ENSCJAG00000062210) ENSCJAG00000084670 ZNF484 (ENSCJAG00000005536) PRXL2C (ENSCJAG00000076685) ENSCJAG00000061833 ENSCJAG00000012598 HABP4 (ENSCJAG00000012589) ENSCJAG00000040778 SLC35D2 (ENSCJAG00000012556) Cebidae_a ANCESTRAL SPECIES 2 ENSGT00940000154755.d ENSGT00940000164098 ENSGT00940000161877 #7 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861.a ENSGT00390000009679 ENSGT00390000000549 Bolivian squirrel monkey MODERN SPECIES 96 PAX1 (ENSSBOG00000032573) #21 NKX2-2 (ENSSBOG00000032080) #22 XRN2 (ENSSBOG00000021014) #24 KIZ (ENSSBOG00000032917) #25 RALGAPA2 (ENSSBOG00000005301) #27 CFAP61 (ENSSBOG00000031606) #29 CRNKL1 (ENSSBOG00000029672) #30 NAA20 (ENSSBOG00000005179) #31 RIN2 (ENSSBOG00000028798) #32 SLC24A3 (ENSSBOG00000030521) #33 DTD1 (ENSSBOG00000025961) #35 SEC23B (ENSSBOG00000020929) #37 RBBP9 (ENSSBOG00000020458) POLR3F (ENSSBOG00000018207) DZANK1 (ENSSBOG00000030675) ENSSBOG00000028652 ZNF133 (ENSSBOG00000025399) Capuchin MODERN SPECIES 134 CST3 (ENSCCAG00000001843) CST9 (ENSCCAG00000024829) CST9L (ENSCCAG00000026509) #7 CST8 (ENSCCAG00000024862) #9 ENSCCAG00000037786 #10 CST11 (ENSCCAG00000035766) #12 CSTL1 (ENSCCAG00000033212) #13 NAPB (ENSCCAG00000029344) #14 GZF1 (ENSCCAG00000035601) #15 NXT1 (ENSCCAG00000015478) #16 CD93 (ENSCCAG00000034013) #17 THBD (ENSCCAG00000020711) #18 SSTR4 (ENSCCAG00000019059) #19 FOXA2 (ENSCCAG00000027576) #20 PAX1 (ENSCCAG00000025569) #21 NKX2-2 (ENSCCAG00000035862) #22 NKX2-4 (ENSCCAG00000032197) #23 ENSCCAG00000036857 #24 KIZ (ENSCCAG00000031682) #25 RALGAPA2 (ENSCCAG00000028362) #27 INSM1 (ENSCCAG00000023181) #28 CFAP61 (ENSCCAG00000026777) #29 CRNKL1 (ENSCCAG00000027037) #30 NAA20 (ENSCCAG00000028274) #31 Mas night monkey MODERN SPECIES 720 CD93 (ENSANAG00000031974) #17 SSTR4 (ENSANAG00000031033) #19 FOXA2 (ENSANAG00000000151) #20 PAX1 (ENSANAG00000031911) #21 NKX2-2 (ENSANAG00000031496) #22 NKX2-4 (ENSANAG00000025954) #23 XRN2 (ENSANAG00000020126) #24 KIZ (ENSANAG00000030324) #25 RALGAPA2 (ENSANAG00000035297) #27 ENSANAG00000025204 INSM1 (ENSANAG00000021754) #28 ENSANAG00000026688 #29 ENSANAG00000033104 #29 ENSANAG00000023984 CRNKL1 (ENSANAG00000024889) #30 ENSANAG00000021111 #31 RIN2 (ENSANAG00000033313) #32 SLC24A3 (ENSANAG00000022086) #33 Catarrhini ANCESTRAL SPECIES 19 ENSGT00940000161877 #7 ENSGT00940000166721 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000013102.e.a.n Hominoidea ANCESTRAL SPECIES 17 ENSGT00940000161877 #7 ENSGT00940000166721 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000013102.e.a.n Hominidae ANCESTRAL SPECIES 18 ENSGT00940000166721 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00910000147439 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000013102.e.a.n Homo/Pan/Gorilla group ANCESTRAL SPECIES 16 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041.g #16 ENSGT00910000147439 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146844.a.b ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00910000148254 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00910000147760 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Homo/Pan group ANCESTRAL SPECIES 17 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041.g #16 ENSGT00910000147439 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146844.a.b ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00910000148254 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00910000147760 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Pan ANCESTRAL SPECIES 15 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041.g #16 ENSGT00910000147439 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146844.a.b ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00910000148254 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00910000147760 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000013102.e.a.n.m.a Bonobo MODERN SPECIES 11 CST8 (ENSPPAG00000037606) #9 ENSPPAG00000034245 #10 CST11 (ENSPPAG00000025372) #12 CSTL1 (ENSPPAG00000038564) #13 NAPB (ENSPPAG00000043876) #14 GZF1 (ENSPPAG00000028487) #15 NXT1 (ENSPPAG00000020479) #16 ENSPPAG00000024534 CD93 (ENSPPAG00000040099) #17 THBD (ENSPPAG00000018179) #18 SSTR4 (ENSPPAG00000036986) #19 ENSPPAG00000031368 #20 ENSPPAG00000024066 ENSPPAG00000043307 PAX1 (ENSPPAG00000035911) #21 NKX2-2 (ENSPPAG00000039042) #22 ENSPPAG00000037349 XRN2 (ENSPPAG00000033549) #24 KIZ (ENSPPAG00000031020) #25 RALGAPA2 (ENSPPAG00000039422) #27 ENSPPAG00000036172 #29 CRNKL1 (ENSPPAG00000027847) #30 NAA20 (ENSPPAG00000016439) #31 RIN2 (ENSPPAG00000037433) #32 ENSPPAG00000035002 SLC24A3 (ENSPPAG00000032340) #33 SCP2D1 (ENSPPAG00000033243) #34 ENSPPAG00000030919 DTD1 (ENSPPAG00000030006) #35 SEC23B (ENSPPAG00000021097) #37 ENSPPAG00000041345 Chimpanzee MODERN SPECIES 11 CST8 (ENSPTRG00000013324) #9 ENSPTRG00000045117 #10 CST11 (ENSPTRG00000013323) #12 CSTL1 (ENSPTRG00000045776) #13 NAPB (ENSPTRG00000013321) #14 GZF1 (ENSPTRG00000013320) #15 NXT1 (ENSPTRG00000013319) #16 ENSPTRG00000046209 CD93 (ENSPTRG00000013318) #17 THBD (ENSPTRG00000013317) #18 SSTR4 (ENSPTRG00000013316) #19 FOXA2 (ENSPTRG00000048023) #20 ENSPTRG00000045139 ENSPTRG00000044291 PAX1 (ENSPTRG00000013311) #21 NKX2-2 (ENSPTRG00000013310) #22 NKX2-4 (ENSPTRG00000013309) #23 ENSPTRG00000047508 XRN2 (ENSPTRG00000013308) #24 ENSPTRG00000044546 KIZ (ENSPTRG00000046348) #25 RALGAPA2 (ENSPTRG00000013306) #27 CFAP61 (ENSPTRG00000013301) #29 CRNKL1 (ENSPTRG00000030609) #30 NAA20 (ENSPTRG00000013299) #31 RIN2 (ENSPTRG00000013298) #32 SLC24A3 (ENSPTRG00000013294) #33 SCP2D1 (ENSPTRG00000013293) #34 ENSPTRG00000048655 DTD1 (ENSPTRG00000013291) #35 SEC23B (ENSPTRG00000013290) #37 Human MODERN SPECIES 12 CST4 (ENSG00000101441) CST3 (ENSG00000101439) CST9 (ENSG00000173335) CST9L (ENSG00000101435) #7 CST8 (ENSG00000125815) #9 CST11 (ENSG00000125831) #12 CSTL1 (ENSG00000125823) #13 NAPB (ENSG00000125814) #14 GZF1 (ENSG00000125812) #15 NXT1 (ENSG00000132661) #16 CD93 (ENSG00000125810) #17 THBD (ENSG00000178726) #18 SSTR4 (ENSG00000132671) #19 FOXA2 (ENSG00000125798) #20 PAX1 (ENSG00000125813) #21 NKX2-2 (ENSG00000125820) #22 NKX2-4 (ENSG00000125816) #23 XRN2 (ENSG00000088930) #24 KIZ (ENSG00000088970) #25 RALGAPA2 (ENSG00000188559) #27 INSM1 (ENSG00000173404) #28 CFAP61 (ENSG00000089101) #29 CRNKL1 (ENSG00000101343) #30 NAA20 (ENSG00000173418) #31 RIN2 (ENSG00000132669) #32 SLC24A3 (ENSG00000185052) #33 SCP2D1 (ENSG00000132631) #34 DTD1 (ENSG00000125821) #35 ENSG00000284776 SMIM26 (ENSG00000232388) #36 SEC23B (ENSG00000101310) #37 Gorilla MODERN SPECIES 11 CST5 (ENSGGOG00000016581) CST2 (ENSGGOG00000007675) CST1 (ENSGGOG00000002786) CST9 (ENSGGOG00000009518) CST9L (ENSGGOG00000015132) #7 ENSGGOG00000038343 #8 CST8 (ENSGGOG00000006139) #9 CSTL1 (ENSGGOG00000013172) #13 NAPB (ENSGGOG00000008548) #14 GZF1 (ENSGGOG00000023248) #15 ENSGGOG00000012539 #16 FOXA2 (ENSGGOG00000006368) #20 ENSGGOG00000040550 ENSGGOG00000038211 PAX1 (ENSGGOG00000016075) #21 NKX2-2 (ENSGGOG00000008080) #22 ENSGGOG00000027030 #23 ENSGGOG00000038958 XRN2 (ENSGGOG00000013738) #24 ENSGGOG00000022720 KIZ (ENSGGOG00000002290) #25 RALGAPA2 (ENSGGOG00000006329) #27 CFAP61 (ENSGGOG00000014189) #29 CRNKL1 (ENSGGOG00000014176) #30 NAA20 (ENSGGOG00000004247) #31 RIN2 (ENSGGOG00000016772) #32 SLC24A3 (ENSGGOG00000004364) #33 SCP2D1 (ENSGGOG00000005677) #34 ENSGGOG00000042789 DTD1 (ENSGGOG00000000080) #35 SEC23B (ENSGGOG00000022369) #37 Orangutan MODERN SPECIES 11 ENSPPYG00000010772 ENSPPYG00000010771 #8 CST8 (ENSPPYG00000010770) #9 ENSPPYG00000037632 #10 CST11 (ENSPPYG00000010769) #12 CSTL1 (ENSPPYG00000010768) #13 NAPB (ENSPPYG00000010767) #14 GZF1 (ENSPPYG00000010766) #15 NXT1 (ENSPPYG00000010765) #16 ENSPPYG00000010764 CD93 (ENSPPYG00000010763) #17 THBD (ENSPPYG00000010762) #18 SSTR4 (ENSPPYG00000010761) #19 FOXA2 (ENSPPYG00000040463) #20 PAX1 (ENSPPYG00000010758) #21 NKX2-2 (ENSPPYG00000010757) #22 NKX2-4 (ENSPPYG00000010756) #23 XRN2 (ENSPPYG00000010755) #24 KIZ (ENSPPYG00000010754) #25 RALGAPA2 (ENSPPYG00000010751) #27 INSM1 (ENSPPYG00000010750) #28 CFAP61 (ENSPPYG00000010748) #29 CRNKL1 (ENSPPYG00000010747) #30 NAA20 (ENSPPYG00000010746) #31 RIN2 (ENSPPYG00000010745) #32 SLC24A3 (ENSPPYG00000010743) #33 SCP2D1 (ENSPPYG00000010741) #34 ENSPPYG00000010740 #35 SMIM26 (ENSPPYG00000033260) #36 SEC23B (ENSPPYG00000010739) #37 RBBP9 (ENSPPYG00000036673) Gibbon MODERN SPECIES 3 CST3 (ENSNLEG00000035405) CST9 (ENSNLEG00000011616) CST8 (ENSNLEG00000011607) #9 ENSNLEG00000033018 #10 CST11 (ENSNLEG00000011603) #12 CSTL1 (ENSNLEG00000011597) #13 NAPB (ENSNLEG00000027099) #14 GZF1 (ENSNLEG00000011565) #15 ENSNLEG00000033556 CD93 (ENSNLEG00000011559) #17 THBD (ENSNLEG00000011558) #18 SSTR4 (ENSNLEG00000018627) #19 ENSNLEG00000031709 ENSNLEG00000031487 #20 PAX1 (ENSNLEG00000010049) #21 NKX2-2 (ENSNLEG00000010048) #22 ENSNLEG00000010047 #23 XRN2 (ENSNLEG00000009991) #24 KIZ (ENSNLEG00000009954) #25 ENSNLEG00000033115 RALGAPA2 (ENSNLEG00000009931) #27 CFAP61 (ENSNLEG00000009893) #29 ENSNLEG00000009862 #30 NAA20 (ENSNLEG00000028442) #31 RIN2 (ENSNLEG00000009844) #32 ENSNLEG00000035380 SLC24A3 (ENSNLEG00000009831) #33 ENSNLEG00000027860 ENSNLEG00000034887 DTD1 (ENSNLEG00000027109) #35 SEC23B (ENSNLEG00000009798) #37 Cercopithecidae ANCESTRAL SPECIES 16 ENSGT00940000161877 #7 ENSGT00940000166721 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183105.A.m.b ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b.g.a #35 ENSGT00860000134050 #36 ENSGT00940000153431.b.h #35 Rhinopithecus ANCESTRAL SPECIES 176 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000155999 #20 ENSGT00950000183087.A.b.b ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183105.A.m.b ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b.h #35 ENSGT00390000006916.c #37 ENSGT00940000164207.g.b ENSGT00390000014861 ENSGT00390000009679 Black snub-nosed monkey MODERN SPECIES 2601 PAX1 (ENSRBIG00000042214) #21 NKX2-2 (ENSRBIG00000031086) #22 ENSRBIG00000014103 Golden snub-nosed monkey MODERN SPECIES 1446 CST8 (ENSRROG00000030761) #9 ENSRROG00000037494 #10 CST11 (ENSRROG00000029851) #12 CSTL1 (ENSRROG00000032535) #13 NAPB (ENSRROG00000044287) #14 GZF1 (ENSRROG00000030533) #15 NXT1 (ENSRROG00000026657) #16 CD93 (ENSRROG00000012087) #17 FOXA2 (ENSRROG00000024272) #20 ENSRROG00000030464 ENSRROG00000040808 PAX1 (ENSRROG00000038854) #21 NKX2-2 (ENSRROG00000041150) #22 NKX2-4 (ENSRROG00000006364) #23 XRN2 (ENSRROG00000044400) #24 ENSRROG00000030791 #25 ENSRROG00000041676 RALGAPA2 (ENSRROG00000037467) #27 CFAP61 (ENSRROG00000040251) #29 CRNKL1 (ENSRROG00000040450) #30 NAA20 (ENSRROG00000036514) #31 Cercopithecinae ANCESTRAL SPECIES 19 ENSGT00940000161877 #7 ENSGT00940000166721 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183105.A.m.b ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b.g.a #35 ENSGT00860000134050 #36 ENSGT00940000153431.b.h #35 Vervet Monkey MODERN SPECIES 11 ENSCSAG00000011001 ENSCSAG00000011012 #7 CST9L (ENSCSAG00000011017) #7 ENSCSAG00000011022 ENSCSAG00000011025 CST3 (ENSCSAG00000011027) ENSCSAG00000011032 ENSCSAG00000011037 GZF1 (ENSCSAG00000011054) #15 NXT1 (ENSCSAG00000018678) #16 CD93 (ENSCSAG00000011058) #17 THBD (ENSCSAG00000018677) #18 SSTR4 (ENSCSAG00000018676) #19 FOXA2 (ENSCSAG00000011062) #20 PAX1 (ENSCSAG00000011068) #21 NKX2-2 (ENSCSAG00000011072) #22 NKX2-4 (ENSCSAG00000011080) #23 XRN2 (ENSCSAG00000011094) #24 KIZ (ENSCSAG00000011135) #25 RALGAPA2 (ENSCSAG00000011248) #27 INSM1 (ENSCSAG00000018675) #28 CFAP61 (ENSCSAG00000011382) #29 CRNKL1 (ENSCSAG00000011434) #30 NAA20 (ENSCSAG00000011440) #31 RIN2 (ENSCSAG00000011446) #32 ENSCSAG00000011450 SLC24A3 (ENSCSAG00000011456) #33 SCP2D1 (ENSCSAG00000018674) #34 DTD1 (ENSCSAG00000011466) #35 SEC23B (ENSCSAG00000011476) #37 RBBP9 (ENSCSAG00000011497) Cercopithecinae_a ANCESTRAL SPECIES 18 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00950000183087.A.a.b.b.g.e.b.a.b ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183105.A.m.b ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b.g.a #35 ENSGT00860000134050 #36 ENSGT00550000074823.a.i.b Cercopithecinae_b ANCESTRAL SPECIES 12 ENSGT00940000164098.a.a ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00950000183087.A.a.b.b.g.e.b.a.b ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183105.A.m.b ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00550000074823.a.i.b ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b.h #35 ENSGT00390000006916.c #37 Cercopithecinae_d ANCESTRAL SPECIES 2 ENSGT00940000154755.d ENSGT00940000164098.a.a ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00950000183087.A.a.b.b.g.e.b.a.b ENSGT00940000156996 #17 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183105.A.m.b ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00550000074823.a.i.b ENSGT00940000153431.b.h #35 ENSGT00390000006916.c #37 ENSGT00390000013102.e.a.n Drill MODERN SPECIES 1539 PAX1 (ENSMLEG00000040057) #21 NKX2-2 (ENSMLEG00000016379) #22 XRN2 (ENSMLEG00000041897) #24 KIZ (ENSMLEG00000035970) #25 RALGAPA2 (ENSMLEG00000022293) #27 Sooty mangabey MODERN SPECIES 602 ENSCATG00000043016 ENSCATG00000033110 CST8 (ENSCATG00000033479) #9 ENSCATG00000043404 #10 CST11 (ENSCATG00000042927) #12 CSTL1 (ENSCATG00000031751) #13 NAPB (ENSCATG00000042262) #14 GZF1 (ENSCATG00000039279) #15 NXT1 (ENSCATG00000019026) #16 ENSCATG00000019258 CD93 (ENSCATG00000009216) #17 SSTR4 (ENSCATG00000019242) #19 FOXA2 (ENSCATG00000033454) #20 ENSCATG00000022190 PAX1 (ENSCATG00000029185) #21 NKX2-2 (ENSCATG00000041599) #22 NKX2-4 (ENSCATG00000023019) #23 XRN2 (ENSCATG00000040350) #24 KIZ (ENSCATG00000042535) #25 ENSCATG00000043761 RALGAPA2 (ENSCATG00000035357) #27 INSM1 (ENSCATG00000037816) #28 CFAP61 (ENSCATG00000043610) #29 CRNKL1 (ENSCATG00000034247) #30 NAA20 (ENSCATG00000027935) #31 RIN2 (ENSCATG00000042503) #32 SLC24A3 (ENSCATG00000034515) #33 ENSCATG00000037045 DTD1 (ENSCATG00000039340) #35 SEC23B (ENSCATG00000026216) #37 ENSCATG00000003757 Olive baboon MODERN SPECIES 7 ENTPD6 (ENSPANG00000026175) ENSPANG00000045994 PYGB (ENSPANG00000024585) ABHD12 (ENSPANG00000001312) GINS1 (ENSPANG00000032488) NINL (ENSPANG00000016039) ENSPANG00000044377 NANP (ENSPANG00000031862) ENSPANG00000048820 CD93 (ENSPANG00000018432) #17 THBD (ENSPANG00000046781) #18 SSTR4 (ENSPANG00000004090) #19 ENSPANG00000044373 FOXA2 (ENSPANG00000011847) #20 PAX1 (ENSPANG00000008282) #21 ENSPANG00000043988 #22 NKX2-4 (ENSPANG00000014236) #23 XRN2 (ENSPANG00000018088) #24 KIZ (ENSPANG00000025535) #25 ENSPANG00000050604 RALGAPA2 (ENSPANG00000018089) #27 ENSPANG00000046512 CFAP61 (ENSPANG00000024586) #29 ENSPANG00000045223 CRNKL1 (ENSPANG00000017420) #30 NAA20 (ENSPANG00000017143) #31 RIN2 (ENSPANG00000025536) #32 SLC24A3 (ENSPANG00000024113) #33 ENSPANG00000050747 ENSPANG00000030391 ENSPANG00000048696 Macaca ANCESTRAL SPECIES 16 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00950000183087.A.a.b.b.g.e.b.a.b ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183105.A.m.b ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b.g.a #35 ENSGT00860000134050 #36 ENSGT00940000153431.b.h #35 Pig-tailed macaque MODERN SPECIES 130 ENSMNEG00000039062 CST9 (ENSMNEG00000039807) CST8 (ENSMNEG00000037697) #9 ENSMNEG00000032864 #10 CST11 (ENSMNEG00000041474) #12 CSTL1 (ENSMNEG00000044944) #13 NAPB (ENSMNEG00000036841) #14 GZF1 (ENSMNEG00000033117) #15 NXT1 (ENSMNEG00000027745) #16 ENSMNEG00000024687 CD93 (ENSMNEG00000042460) #17 SSTR4 (ENSMNEG00000038323) #19 FOXA2 (ENSMNEG00000011763) #20 ENSMNEG00000028347 PAX1 (ENSMNEG00000040896) #21 NKX2-2 (ENSMNEG00000045238) #22 NKX2-4 (ENSMNEG00000028280) #23 XRN2 (ENSMNEG00000040626) #24 KIZ (ENSMNEG00000028617) #25 ENSMNEG00000039122 RALGAPA2 (ENSMNEG00000033398) #27 INSM1 (ENSMNEG00000029140) #28 CFAP61 (ENSMNEG00000036910) #29 CRNKL1 (ENSMNEG00000037490) #30 NAA20 (ENSMNEG00000033202) #31 RIN2 (ENSMNEG00000005068) #32 SLC24A3 (ENSMNEG00000029022) #33 ENSMNEG00000043133 ENSMNEG00000040178 #35 SEC23B (ENSMNEG00000030931) #37 ENSMNEG00000028082 Macaca_a ANCESTRAL SPECIES 18 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00950000183087.A.a.b.b.g.e.b.a.b ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00910000146941 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.b.b.b.a.a.b.a.a.a ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b.g.a #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Crab-eating macaque MODERN SPECIES 1 ENSMFAG00000061186 #8 CST8 (ENSMFAG00000033001) #9 ENSMFAG00000032810 #10 CST11 (ENSMFAG00000038093) #12 CSTL1 (ENSMFAG00000057818) #13 NAPB (ENSMFAG00000012865) #14 ENSMFAG00000058516 GZF1 (ENSMFAG00000042408) #15 NXT1 (ENSMFAG00000065310) #16 ENSMFAG00000026040 CD93 (ENSMFAG00000043644) #17 SSTR4 (ENSMFAG00000017458) #19 FOXA2 (ENSMFAG00000047214) #20 ENSMFAG00000057184 PAX1 (ENSMFAG00000044435) #21 NKX2-2 (ENSMFAG00000044462) #22 XRN2 (ENSMFAG00000038122) #24 KIZ (ENSMFAG00000036086) #25 RALGAPA2 (ENSMFAG00000039275) #27 CFAP61 (ENSMFAG00000040250) #29 CRNKL1 (ENSMFAG00000039893) #30 RIN2 (ENSMFAG00000002995) #32 ENSMFAG00000065169 SLC24A3 (ENSMFAG00000037051) #33 SCP2D1 (ENSMFAG00000050245) #34 ENSMFAG00000034375 #35 SMIM26 (ENSMFAG00000052911) #36 SEC23B (ENSMFAG00000041652) #37 ENSMFAG00000030191 RBBP9 (ENSMFAG00000058087) POLR3F (ENSMFAG00000002227) Rhesus MODERN SPECIES 1 CST9 (ENSMMUG00000039259) ENSMMUG00000063687 ENSMMUG00000059402 #8 CST8 (ENSMMUG00000016489) #9 ENSMMUG00000016490 #10 CST11 (ENSMMUG00000022393) #12 CSTL1 (ENSMMUG00000055975) #13 NAPB (ENSMMUG00000022388) #14 GZF1 (ENSMMUG00000022387) #15 NXT1 (ENSMMUG00000022386) #16 CD93 (ENSMMUG00000016813) #17 THBD (ENSMMUG00000016814) #18 SSTR4 (ENSMMUG00000016815) #19 FOXA2 (ENSMMUG00000010410) #20 PAX1 (ENSMMUG00000019409) #21 ENSMMUG00000056728 #22 NKX2-4 (ENSMMUG00000011409) #23 XRN2 (ENSMMUG00000011405) #24 KIZ (ENSMMUG00000002060) #25 RALGAPA2 (ENSMMUG00000018371) #27 INSM1 (ENSMMUG00000039294) #28 CFAP61 (ENSMMUG00000042668) #29 CRNKL1 (ENSMMUG00000007709) #30 NAA20 (ENSMMUG00000007708) #31 RIN2 (ENSMMUG00000010114) #32 ENSMMUG00000051129 SLC24A3 (ENSMMUG00000002321) #33 SCP2D1 (ENSMMUG00000050690) #34 DTD1 (ENSMMUG00000012880) #35 SEC23B (ENSMMUG00000012878) #37 RBBP9 (ENSMMUG00000004146) Laurasiatheria ANCESTRAL SPECIES 17 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000159727 #22 Hedgehog MODERN SPECIES 2505 NKX2-2 (ENSEEUG00000000616) #22 Laurasiatheria_a ANCESTRAL SPECIES 18 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Artiodactyla ANCESTRAL SPECIES 18 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Suina ANCESTRAL SPECIES 9 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Pig MODERN SPECIES 8 SYNDIG1 (ENSSSCG00000007130) CST3 (ENSSSCG00000037360) CST9L (ENSSSCG00000029289) #7 ENSSSCG00000007125 #8 ENSSSCG00000007124 #9 ENSSSCG00000007123 CST11 (ENSSSCG00000007122) #12 CSTL1 (ENSSSCG00000007121) #13 NAPB (ENSSSCG00000031219) #14 GZF1 (ENSSSCG00000007117) #15 NXT1 (ENSSSCG00000007119) #16 CD93 (ENSSSCG00000007116) #17 THBD (ENSSSCG00000053422) #18 FOXA2 (ENSSSCG00000007114) #20 PAX1 (ENSSSCG00000007112) #21 NKX2-2 (ENSSSCG00000040017) #22 NKX2-4 (ENSSSCG00000007110) #23 XRN2 (ENSSSCG00000007109) #24 KIZ (ENSSSCG00000007108) #25 ENSSSCG00000048962 RALGAPA2 (ENSSSCG00000026506) #27 INSM1 (ENSSSCG00000062159) #28 CFAP61 (ENSSSCG00000038858) #29 CRNKL1 (ENSSSCG00000038587) #30 NAA20 (ENSSSCG00000028132) #31 ENSSSCG00000028004 #32 SLC24A3 (ENSSSCG00000007100) #33 SCP2D1 (ENSSSCG00000007099) #34 DTD1 (ENSSSCG00000007098) #35 SMIM26 (ENSSSCG00000025589) #36 SEC23B (ENSSSCG00000007097) #37 Chacoan peccary MODERN SPECIES 801 SYNDIG1 (ENSCWAG00000016959) CST3 (ENSCWAG00000016979) ENSCWAG00000017004 #7 ENSCWAG00000017060 #8 CST8 (ENSCWAG00000017086) #9 ENSCWAG00000017127 CST11 (ENSCWAG00000017158) #12 CSTL1 (ENSCWAG00000017189) #13 NAPB (ENSCWAG00000017225) #14 GZF1 (ENSCWAG00000017910) #15 NXT1 (ENSCWAG00000017956) #16 CD93 (ENSCWAG00000017965) #17 THBD (ENSCWAG00000017996) #18 FOXA2 (ENSCWAG00000007985) #20 PAX1 (ENSCWAG00000008052) #21 NKX2-2 (ENSCWAG00000008122) #22 NKX2-4 (ENSCWAG00000008162) #23 XRN2 (ENSCWAG00000008201) #24 KIZ (ENSCWAG00000008351) #25 RALGAPA2 (ENSCWAG00000008863) #27 INSM1 (ENSCWAG00000009223) #28 CFAP61 (ENSCWAG00000009261) #29 CRNKL1 (ENSCWAG00000009575) #30 NAA20 (ENSCWAG00000009645) #31 ENSCWAG00000009830 #32 SLC24A3 (ENSCWAG00000009885) #33 SCP2D1 (ENSCWAG00000010002) #34 DTD1 (ENSCWAG00000010021) #35 SMIM26 (ENSCWAG00000010058) #36 SEC23B (ENSCWAG00000010080) #37 RBBP9 (ENSCWAG00000010152) Artiodactyla_a ANCESTRAL SPECIES 16 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Camelidae ANCESTRAL SPECIES 49 ENSGT00940000154755 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 ENSGT00390000009679 ENSGT00390000000549 Arabian camel MODERN SPECIES 10 ENSCDRG00005019533 #7 ENSCDRG00005019539 #7 ENSCDRG00005019553 #8 CST8 (ENSCDRG00005019565) #9 ENSCDRG00005019579 ENSCDRG00005019599 #11 ENSCDRG00005019617 #12 CSTL1 (ENSCDRG00005019624) #13 ENSCDRG00005019640 #14 GZF1 (ENSCDRG00005019674) #15 ENSCDRG00005019685 #16 CD93 (ENSCDRG00005019688) #17 ENSCDRG00005019694 FOXA2 (ENSCDRG00005019700) #20 PAX1 (ENSCDRG00005019717) #21 NKX2-2 (ENSCDRG00005019726) #22 XRN2 (ENSCDRG00005019738) #24 KIZ (ENSCDRG00005019794) #25 ENSCDRG00005020052 #27 ENSCDRG00005020129 #27 CFAP61 (ENSCDRG00005020211) #29 CRNKL1 (ENSCDRG00005020237) #30 NAA20 (ENSCDRG00005020249) #31 RIN2 (ENSCDRG00005020269) #32 SLC24A3 (ENSCDRG00005020283) #33 SCP2D1 (ENSCDRG00005020314) #34 DTD1 (ENSCDRG00005003474) #35 SMIM26 (ENSCDRG00005003504) #36 SEC23B (ENSCDRG00005003558) #37 RBBP9 (ENSCDRG00005003649) POLR3F (ENSCDRG00005003691) Artiodactyla_b ANCESTRAL SPECIES 17 ENSGT00940000161877.i #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Cetacea ANCESTRAL SPECIES 3 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Blue whale MODERN SPECIES 6 ENSBMSG00010012402 #8 CST8 (ENSBMSG00010012422) #9 ENSBMSG00010012475 ENSBMSG00010012491 #11 CST11 (ENSBMSG00010012502) #12 CSTL1 (ENSBMSG00010012521) #13 NAPB (ENSBMSG00010012544) #14 ENSBMSG00010012568 #15 ENSBMSG00010012580 #15 NXT1 (ENSBMSG00010012589) #16 CD93 (ENSBMSG00010012595) #17 THBD (ENSBMSG00010012612) #18 SSTR4 (ENSBMSG00010013828) #19 FOXA2 (ENSBMSG00010013859) #20 PAX1 (ENSBMSG00010013891) #21 NKX2-2 (ENSBMSG00010013921) #22 NKX2-4 (ENSBMSG00010013938) #23 XRN2 (ENSBMSG00010014058) #24 KIZ (ENSBMSG00010014281) #25 RALGAPA2 (ENSBMSG00010014396) #27 INSM1 (ENSBMSG00010014572) #28 CFAP61 (ENSBMSG00010014638) #29 CRNKL1 (ENSBMSG00010014711) #30 NAA20 (ENSBMSG00010014762) #31 RIN2 (ENSBMSG00010014833) #32 SLC24A3 (ENSBMSG00010014883) #33 DTD1 (ENSBMSG00010014971) #35 SMIM26 (ENSBMSG00010015007) #36 SEC23B (ENSBMSG00010015074) #37 RBBP9 (ENSBMSG00010015177) POLR3F (ENSBMSG00010015197) Odontoceti ANCESTRAL SPECIES 3 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Sperm whale MODERN SPECIES 5 APMAP (ENSPCTG00005009088) CST7 (ENSPCTG00005009166) ENSPCTG00005009228 ENSPCTG00005009273 #14 CSTL1 (ENSPCTG00005009306) #13 CST11 (ENSPCTG00005009381) #12 ENSPCTG00005009442 #11 ENSPCTG00005009487 #8 ENSPCTG00005009530 #7 ENSPCTG00005009585 #7 CST3 (ENSPCTG00005009637) CD93 (ENSPCTG00005009671) #17 SSTR4 (ENSPCTG00005009716) #19 FOXA2 (ENSPCTG00005009780) #20 PAX1 (ENSPCTG00005009858) #21 NKX2-2 (ENSPCTG00005009931) #22 NKX2-4 (ENSPCTG00005009959) #23 XRN2 (ENSPCTG00005010006) #24 KIZ (ENSPCTG00005010162) #25 RALGAPA2 (ENSPCTG00005010848) #27 INSM1 (ENSPCTG00005011042) #28 CFAP61 (ENSPCTG00005011086) #29 CRNKL1 (ENSPCTG00005011230) #30 NAA20 (ENSPCTG00005011278) #31 ENSPCTG00005011375 #32 SLC24A3 (ENSPCTG00005011433) #33 SCP2D1 (ENSPCTG00005011622) #34 DTD1 (ENSPCTG00005011639) #35 SMIM26 (ENSPCTG00005011687) #36 SEC23B (ENSPCTG00005011745) #37 RBBP9 (ENSPCTG00005011839) Odontoceti_a ANCESTRAL SPECIES 3 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Dolphin MODERN SPECIES 2997 NKX2-2 (ENSTTRG00000009146) #22 XRN2 (ENSTTRG00000009087) #24 KIZ (ENSTTRG00000009024) #25 Odontoceti_b ANCESTRAL SPECIES 3 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00390000014105.n ENSGT00940000155255.q.b ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 Vaquita MODERN SPECIES 6 ACSS1 (ENSPSNG00000010625) APMAP (ENSPSNG00000010757) CST7 (ENSPSNG00000010836) SYNDIG1 (ENSPSNG00000010897) CST3 (ENSPSNG00000010957) ENSPSNG00000011009 #7 ENSPSNG00000011147 #8 ENSPSNG00000011208 #14 GZF1 (ENSPSNG00000011314) #15 NXT1 (ENSPSNG00000011355) #16 CD93 (ENSPSNG00000011407) #17 THBD (ENSPSNG00000011441) #18 SSTR4 (ENSPSNG00000011467) #19 FOXA2 (ENSPSNG00000004696) #20 PAX1 (ENSPSNG00000004773) #21 NKX2-2 (ENSPSNG00000004832) #22 NKX2-4 (ENSPSNG00000004868) #23 XRN2 (ENSPSNG00000004918) #24 KIZ (ENSPSNG00000005041) #25 ENSPSNG00000005168 #27 ENSPSNG00000005197 #27 INSM1 (ENSPSNG00000005223) #28 ENSPSNG00000005235 ENSPSNG00000005250 #29 ENSPSNG00000005292 #29 BLCAP (ENSPSNG00000005346) ENSPSNG00000005363 CRNKL1 (ENSPSNG00000005386) #30 NAA20 (ENSPSNG00000005428) #31 RIN2 (ENSPSNG00000005508) #32 SLC24A3 (ENSPSNG00000005554) #33 Monodontidae ANCESTRAL SPECIES 1 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00390000014105.n ENSGT00940000155255.q.b ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 Narwhal MODERN SPECIES 299 CST7 (ENSMMNG00015013746) SYNDIG1 (ENSMMNG00015013754) CST3 (ENSMMNG00015013767) ENSMMNG00015013782 #7 ENSMMNG00015013807 #8 CST11 (ENSMMNG00015013816) #12 CSTL1 (ENSMMNG00015013827) #13 ENSMMNG00015013840 #14 GZF1 (ENSMMNG00015013857) #15 NXT1 (ENSMMNG00015013866) #16 CD93 (ENSMMNG00015013869) #17 THBD (ENSMMNG00015013881) #18 SSTR4 (ENSMMNG00015013888) #19 FOXA2 (ENSMMNG00015013909) #20 PAX1 (ENSMMNG00015013924) #21 NKX2-2 (ENSMMNG00015013937) #22 NKX2-4 (ENSMMNG00015013943) #23 XRN2 (ENSMMNG00015013954) #24 KIZ (ENSMMNG00015014032) #25 RALGAPA2 (ENSMMNG00015014137) #27 INSM1 (ENSMMNG00015014194) #28 CFAP61 (ENSMMNG00015014206) #29 ENSMMNG00015014237 ENSMMNG00015014247 CRNKL1 (ENSMMNG00015014256) #30 NAA20 (ENSMMNG00015014274) #31 RIN2 (ENSMMNG00015014306) #32 SLC24A3 (ENSMMNG00015014333) #33 SCP2D1 (ENSMMNG00015014357) #34 DTD1 (ENSMMNG00015014368) #35 SMIM26 (ENSMMNG00015014382) #36 Beluga whale MODERN SPECIES 48 SYNDIG1 (ENSDLEG00000004982) CST3 (ENSDLEG00000004985) ENSDLEG00000005018 #7 ENSDLEG00000005035 #8 ENSDLEG00000005044 #11 CST11 (ENSDLEG00000005067) #12 CSTL1 (ENSDLEG00000005075) #13 ENSDLEG00000005080 #14 GZF1 (ENSDLEG00000005091) #15 NXT1 (ENSDLEG00000005096) #16 CD93 (ENSDLEG00000005100) #17 THBD (ENSDLEG00000005104) #18 SSTR4 (ENSDLEG00000005108) #19 FOXA2 (ENSDLEG00000005115) #20 PAX1 (ENSDLEG00000005123) #21 NKX2-2 (ENSDLEG00000005132) #22 NKX2-4 (ENSDLEG00000005154) #23 XRN2 (ENSDLEG00000005166) #24 KIZ (ENSDLEG00000005207) #25 RALGAPA2 (ENSDLEG00000005252) #27 CFAP61 (ENSDLEG00000005301) #29 ENSDLEG00000005319 ENSDLEG00000005324 CRNKL1 (ENSDLEG00000005333) #30 NAA20 (ENSDLEG00000005370) #31 RIN2 (ENSDLEG00000005378) #32 SLC24A3 (ENSDLEG00000005408) #33 ENSDLEG00000005476 SCP2D1 (ENSDLEG00000005480) #34 DTD1 (ENSDLEG00000005506) #35 SMIM26 (ENSDLEG00000005510) #36 Pecora ANCESTRAL SPECIES 9 ENSGT00940000161877.j #7 ENSGT00940000161877.i #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Yarkand deer MODERN SPECIES 15 ENSCHYG00000023900 #9 ENSCHYG00000023874 ENSCHYG00000023860 #11 ENSCHYG00000023824 #12 ENSCHYG00000023804 #13 NAPB (ENSCHYG00000023659) #14 GZF1 (ENSCHYG00000023598) #15 NXT1 (ENSCHYG00000023576) #16 CD93 (ENSCHYG00000023556) #17 THBD (ENSCHYG00000023542) #18 ENSCHYG00000023501 ENSCHYG00000023462 FOXA2 (ENSCHYG00000023420) #20 PAX1 (ENSCHYG00000023364) #21 ENSCHYG00000023344 NKX2-2 (ENSCHYG00000023304) #22 NKX2-4 (ENSCHYG00000023282) #23 XRN2 (ENSCHYG00000022819) #24 ENSCHYG00000022761 ENSCHYG00000022734 KIZ (ENSCHYG00000022176) #25 RALGAPA2 (ENSCHYG00000021147) #27 INSM1 (ENSCHYG00000021030) #28 CFAP61 (ENSCHYG00000020914) #29 CRNKL1 (ENSCHYG00000020782) #30 NAA20 (ENSCHYG00000020635) #31 RIN2 (ENSCHYG00000020319) #32 ENSCHYG00000020275 SLC24A3 (ENSCHYG00000020129) #33 SCP2D1 (ENSCHYG00000020102) #34 DTD1 (ENSCHYG00000019989) #35 Percora_a ANCESTRAL SPECIES 10 ENSGT00940000161877.j #7 ENSGT00940000161877.i #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Siberian musk deer MODERN SPECIES 1194 CST3 (ENSMMSG00000018564) ENSMMSG00000018584 #7 ENSMMSG00000018603 #8 CST8 (ENSMMSG00000018626) #9 ENSMMSG00000018653 ENSMMSG00000018676 #11 ENSMMSG00000018712 #12 CSTL1 (ENSMMSG00000018731) #13 NAPB (ENSMMSG00000018763) #14 GZF1 (ENSMMSG00000018836) #15 NXT1 (ENSMMSG00000018866) #16 CD93 (ENSMMSG00000018871) #17 THBD (ENSMMSG00000018897) #18 FOXA2 (ENSMMSG00000018910) #20 PAX1 (ENSMMSG00000018943) #21 NKX2-2 (ENSMMSG00000018973) #22 ENSMMSG00000018994 ENSMMSG00000019016 NKX2-4 (ENSMMSG00000019032) #23 XRN2 (ENSMMSG00000019064) #24 KIZ (ENSMMSG00000019151) #25 RALGAPA2 (ENSMMSG00000019313) #27 INSM1 (ENSMMSG00000019511) #28 ENSMMSG00000019522 ENSMMSG00000019535 #29 ENSMMSG00000019564 #29 CRNKL1 (ENSMMSG00000019594) #30 NAA20 (ENSMMSG00000019613) #31 RIN2 (ENSMMSG00000019665) #32 SLC24A3 (ENSMMSG00000019736) #33 SCP2D1 (ENSMMSG00000019818) #34 Bovidae ANCESTRAL SPECIES 10 ENSGT00940000161877.j #7 ENSGT00940000161877.i #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Caprinae ANCESTRAL SPECIES 23 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00950000183014.f.a.h.u.a.a.b.a ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155114.wb.b ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT00390000001138.a.g ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00860000134050 #36 ENSGT00940000153431.b.b #35 ENSGT00390000006916.c #37 Rambouillet Sheep MODERN SPECIES 4 ENSOARG00020005253 #8 ENSOARG00020005233 #9 ENSOARG00020005223 ENSOARG00020005206 #11 ENSOARG00020005178 #12 CSTL1 (ENSOARG00020005157) #13 NAPB (ENSOARG00020004860) #14 GZF1 (ENSOARG00020004766) #15 NXT1 (ENSOARG00020004744) #16 ENSOARG00020004719 CD93 (ENSOARG00020004706) #17 ENSOARG00020004667 FOXA2 (ENSOARG00020004643) #20 ENSOARG00020004631 PAX1 (ENSOARG00020004579) #21 NKX2-2 (ENSOARG00020004554) #22 NKX2-4 (ENSOARG00020004533) #23 XRN2 (ENSOARG00020004498) #24 KIZ (ENSOARG00020004321) #25 RALGAPA2 (ENSOARG00020003837) #27 INSM1 (ENSOARG00020003800) #28 CFAP61 (ENSOARG00020003632) #29 CRNKL1 (ENSOARG00020003543) #30 NAA20 (ENSOARG00020003499) #31 RIN2 (ENSOARG00020003240) #32 ENSOARG00020023127 SLC24A3 (ENSOARG00020023051) #33 SCP2D1 (ENSOARG00020023032) #34 ENSOARG00020023011 #35 SMIM26 (ENSOARG00020022969) #36 SEC23B (ENSOARG00020022920) #37 Goat MODERN SPECIES 4 ENSCHIG00000022173 #7 ENSCHIG00000009930 #7 ENSCHIG00000021829 #8 ENSCHIG00000025947 #9 ENSCHIG00000017766 ENSCHIG00000003642 #11 ENSCHIG00000021813 #12 NAPB (ENSCHIG00000020249) #14 GZF1 (ENSCHIG00000008882) #15 ENSCHIG00000021979 CD93 (ENSCHIG00000009092) #17 THBD (ENSCHIG00000010975) #18 ENSCHIG00000022438 FOXA2 (ENSCHIG00000013879) #20 PAX1 (ENSCHIG00000025250) #21 NKX2-2 (ENSCHIG00000025252) #22 NKX2-4 (ENSCHIG00000017092) #23 ENSCHIG00000009213 XRN2 (ENSCHIG00000006921) #24 KIZ (ENSCHIG00000020496) #25 ENSCHIG00000001410 ENSCHIG00000005268 RALGAPA2 (ENSCHIG00000023081) #27 INSM1 (ENSCHIG00000002944) #28 CFAP61 (ENSCHIG00000022048) #29 CRNKL1 (ENSCHIG00000013171) #30 NAA20 (ENSCHIG00000021922) #31 RIN2 (ENSCHIG00000009997) #32 ENSCHIG00000020114 ENSCHIG00000008840 SLC24A3 (ENSCHIG00000010684) #33 Bovinae ANCESTRAL SPECIES 20 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000153362.a.cb.b.a.a ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT00390000001138.a.g.b ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Bos ANCESTRAL SPECIES 22 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554.jb #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137.d #21 ENSGT00940000153362.a.cb.b.a.a ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B.d #32 ENSGT00390000001138.a.g.b ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Bos_b ANCESTRAL SPECIES 4 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554.jb #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137.d #21 ENSGT00940000153362.a.bb.b.a ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B.d #32 ENSGT00390000001138.a.g.b ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00950000183210.d.a.c.a.a.b.f.a.b ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Cow MODERN SPECIES 4 SYNDIG1 (ENSBTAG00000040147) CST3 (ENSBTAG00000000598) ENSBTAG00000032687 #7 ENSBTAG00000015949 #8 CST8 (ENSBTAG00000032694) #9 MGC133636 (ENSBTAG00000013416) #11 ENSBTAG00000027420 NAPB (ENSBTAG00000032704) #14 GZF1 (ENSBTAG00000008908) #15 NXT1 (ENSBTAG00000004993) #16 CD93 (ENSBTAG00000004207) #17 THBD (ENSBTAG00000048591) #18 FOXA2 (ENSBTAG00000012407) #20 PAX1 (ENSBTAG00000006742) #21 ENSBTAG00000035643 NKX2-2 (ENSBTAG00000010277) #22 NKX2-4 (ENSBTAG00000011312) #23 XRN2 (ENSBTAG00000011304) #24 KIZ (ENSBTAG00000020988) #25 RALGAPA2 (ENSBTAG00000014178) #27 CFAP61 (ENSBTAG00000009291) #29 CRNKL1 (ENSBTAG00000008472) #30 NAA20 (ENSBTAG00000001144) #31 RIN2 (ENSBTAG00000020382) #32 ENSBTAG00000032893 SLC24A3 (ENSBTAG00000011882) #33 SCP2D1 (ENSBTAG00000005202) #34 ENSBTAG00000012276 DTD1 (ENSBTAG00000008964) #35 SMIM26 (ENSBTAG00000051249) #36 SEC23B (ENSBTAG00000018295) #37 Bos_a ANCESTRAL SPECIES 7 ENSGT00940000161877.j #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554.jb #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137.d #21 ENSGT00940000153362.a.cb.b.a.a ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B.d #32 ENSGT00960000190537 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00950000183210.d.a.c.a.a.b.f.a.b ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Wild yak MODERN SPECIES 194 CD93 (ENSBMUG00000003082) #17 ENSBMUG00000003102 #18 FOXA2 (ENSBMUG00000003127) #20 PAX1 (ENSBMUG00000003140) #21 ENSBMUG00000003171 NKX2-2 (ENSBMUG00000003181) #22 XRN2 (ENSBMUG00000003295) #24 KIZ (ENSBMUG00000003411) #25 RALGAPA2 (ENSBMUG00000003599) #27 CFAP61 (ENSBMUG00000003762) #29 CRNKL1 (ENSBMUG00000003809) #30 NAA20 (ENSBMUG00000003835) #31 RIN2 (ENSBMUG00000003883) #32 ENSBMUG00000003910 SLC24A3 (ENSBMUG00000003930) #33 SCP2D1 (ENSBMUG00000003945) #34 ENSBMUG00000003967 DTD1 (ENSBMUG00000004000) #35 SMIM26 (ENSBMUG00000004015) #36 SEC23B (ENSBMUG00000004165) #37 RBBP9 (ENSBMUG00000004226) Domestic yak MODERN SPECIES 3 ENSBGRG00000007655 ENSBGRG00000007612 #11 ENSBGRG00000007520 #12 CSTL1 (ENSBGRG00000007456) #13 NAPB (ENSBGRG00000007201) #14 ENSBGRG00000007150 #15 ENSBGRG00000007097 #15 NXT1 (ENSBGRG00000007076) #16 ENSBGRG00000007043 CD93 (ENSBGRG00000006986) #17 THBD (ENSBGRG00000006963) #18 FOXA2 (ENSBGRG00000006927) #20 PAX1 (ENSBGRG00000006855) #21 ENSBGRG00000006824 #21 ENSBGRG00000006808 NKX2-2 (ENSBGRG00000006790) #22 NKX2-4 (ENSBGRG00000006760) #23 XRN2 (ENSBGRG00000006633) #24 KIZ (ENSBGRG00000006486) #25 ENSBGRG00000006333 #27 ENSBGRG00000006247 #27 INSM1 (ENSBGRG00000006219) #28 CFAP61 (ENSBGRG00000006111) #29 CRNKL1 (ENSBGRG00000006006) #30 NAA20 (ENSBGRG00000005893) #31 ENSBGRG00000005870 #32 ENSBGRG00000005832 #32 SLC24A3 (ENSBGRG00000005785) #33 ENSBGRG00000005768 DTD1 (ENSBGRG00000005731) #35 SMIM26 (ENSBGRG00000005700) #36 American bison MODERN SPECIES 2997 CST3 (ENSBBBG00000005938) ENSBBBG00000022502 #7 ENSBBBG00000022506 #8 CST8 (ENSBBBG00000022516) #9 ENSBBBG00000005942 ENSBBBG00000022528 #11 ENSBBBG00000022535 #12 CSTL1 (ENSBBBG00000022543) #13 NAPB (ENSBBBG00000022632) #14 GZF1 (ENSBBBG00000022655) #15 CD93 (ENSBBBG00000005967) #17 THBD (ENSBBBG00000022684) #18 FOXA2 (ENSBBBG00000022700) #20 PAX1 (ENSBBBG00000022763) #21 ENSBBBG00000022780 ENSBBBG00000022786 #22 XRN2 (ENSBBBG00000022814) #24 KIZ (ENSBBBG00000022908) #25 RALGAPA2 (ENSBBBG00000022984) #27 ENSBBBG00000022996 #28 CFAP61 (ENSBBBG00000006046) #29 CRNKL1 (ENSBBBG00000008793) #30 NAA20 (ENSBBBG00000023097) #31 RIN2 (ENSBBBG00000023140) #32 ENSBBBG00000023147 SLC24A3 (ENSBBBG00000000461) #33 SCP2D1 (ENSBBBG00000000425) #34 DTD1 (ENSBBBG00000000410) #35 SMIM26 (ENSBBBG00000000399) #36 SEC23B (ENSBBBG00000023236) #37 RBBP9 (ENSBBBG00000006080) Laurasiatheria_b ANCESTRAL SPECIES 19 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Laurasiatheria_c ANCESTRAL SPECIES 17 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Equus ANCESTRAL SPECIES 8 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00510000047812.l ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 Horse MODERN SPECIES 14 SYNDIG1 (ENSECAG00000006421) CST3 (ENSECAG00000038893) ENSECAG00000045045 #8 CST9L (ENSECAG00000010654) #7 CST8 (ENSECAG00000029932) #9 ENSECAG00000014988 #11 CST11 (ENSECAG00000016342) #12 CSTL1 (ENSECAG00000019672) #13 NAPB (ENSECAG00000022016) #14 GZF1 (ENSECAG00000011343) #15 NXT1 (ENSECAG00000035032) #16 CD93 (ENSECAG00000016324) #17 THBD (ENSECAG00000005241) #18 FOXA2 (ENSECAG00000032004) #20 PAX1 (ENSECAG00000016945) #21 NKX2-2 (ENSECAG00000018977) #22 NKX2-4 (ENSECAG00000037105) #23 XRN2 (ENSECAG00000018988) #24 KIZ (ENSECAG00000016626) #25 ENSECAG00000036437 RALGAPA2 (ENSECAG00000019950) #27 INSM1 (ENSECAG00000037552) #28 CFAP61 (ENSECAG00000004364) #29 CRNKL1 (ENSECAG00000022215) #30 NAA20 (ENSECAG00000012609) #31 RIN2 (ENSECAG00000015381) #32 SLC24A3 (ENSECAG00000019334) #33 DTD1 (ENSECAG00000025075) #35 SEC23B (ENSECAG00000025087) #37 RBBP9 (ENSECAG00000001333) POLR3F (ENSECAG00000009920) Donkey MODERN SPECIES 6 ENSEASG00005002598 ENSEASG00005027176 #7 ENSEASG00005025391 #8 CST8 (ENSEASG00005030555) #9 ENSEASG00005031840 CST11 (ENSEASG00005002576) #12 CSTL1 (ENSEASG00005002572) #13 NAPB (ENSEASG00005002564) #14 GZF1 (ENSEASG00005002557) #15 NXT1 (ENSEASG00005033641) #16 CD93 (ENSEASG00005002547) #17 THBD (ENSEASG00005027531) #18 SSTR4 (ENSEASG00005002540) #19 FOXA2 (ENSEASG00005002535) #20 PAX1 (ENSEASG00005002521) #21 NKX2-2 (ENSEASG00005038540) #22 NKX2-4 (ENSEASG00005002501) #23 XRN2 (ENSEASG00005002484) #24 KIZ (ENSEASG00005002467) #25 ENSEASG00005002454 RALGAPA2 (ENSEASG00005002224) #27 INSM1 (ENSEASG00005002118) #28 CFAP61 (ENSEASG00005002079) #29 CRNKL1 (ENSEASG00005002072) #30 NAA20 (ENSEASG00005002069) #31 RIN2 (ENSEASG00005002067) #32 SLC24A3 (ENSEASG00005002055) #33 SCP2D1 (ENSEASG00005037273) #34 DTD1 (ENSEASG00005002041) #35 SEC23B (ENSEASG00005002036) #37 RBBP9 (ENSEASG00005023627) Chiroptera ANCESTRAL SPECIES 7 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Microchiroptera ANCESTRAL SPECIES 6 ENSGT00950000183147.B ENSGT00940000154755 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Microbat MODERN SPECIES 1142 PAX1 (ENSMLUG00000014710) #21 NKX2-2 (ENSMLUG00000009371) #22 XRN2 (ENSMLUG00000001536) #24 KIZ (ENSMLUG00000001531) #25 RALGAPA2 (ENSMLUG00000016548) #27 CFAP61 (ENSMLUG00000016527) #29 CRNKL1 (ENSMLUG00000016513) #30 NAA20 (ENSMLUG00000016508) #31 RIN2 (ENSMLUG00000016498) #32 SLC24A3 (ENSMLUG00000005788) #33 Greater horseshoe bat MODERN SPECIES 15 CST9L (ENSRFEG00010011055) #7 ENSRFEG00010011001 #8 ENSRFEG00010010952 CST11 (ENSRFEG00010010901) #12 CSTL1 (ENSRFEG00010010843) #13 NAPB (ENSRFEG00010010719) #14 GZF1 (ENSRFEG00010010618) #15 NXT1 (ENSRFEG00010010600) #16 CD93 (ENSRFEG00010010553) #17 THBD (ENSRFEG00010010533) #18 ENSRFEG00010010499 ENSRFEG00010010431 FOXA2 (ENSRFEG00010010354) #20 ENSRFEG00010010271 PAX1 (ENSRFEG00010010205) #21 NKX2-2 (ENSRFEG00010010185) #22 NKX2-4 (ENSRFEG00010010146) #23 XRN2 (ENSRFEG00010010058) #24 ENSRFEG00010010021 KIZ (ENSRFEG00010009832) #25 ENSRFEG00010009788 RALGAPA2 (ENSRFEG00010009655) #27 INSM1 (ENSRFEG00010009617) #28 CFAP61 (ENSRFEG00010009533) #29 CRNKL1 (ENSRFEG00010009485) #30 NAA20 (ENSRFEG00010009410) #31 RIN2 (ENSRFEG00010009330) #32 ENSRFEG00010009294 SLC24A3 (ENSRFEG00010009266) #33 ENSRFEG00010009202 DTD1 (ENSRFEG00010009168) #35 Carnivora ANCESTRAL SPECIES 20 ENSGT00940000161877.n #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Felidae ANCESTRAL SPECIES 3 ENSGT00940000163249 #8 ENSGT00950000182865.b.a.b.b.a.b ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Panthera ANCESTRAL SPECIES 2 ENSGT00940000163249 #8 ENSGT00950000182865.b.a.b.b.a.b ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Tiger MODERN SPECIES 535 ENSPTIG00000007645 ENSPTIG00000007325 CST9L (ENSPTIG00000007266) #7 ENSPTIG00000007155 #8 CST8 (ENSPTIG00000006377) #9 ENSPTIG00000005641 ENSPTIG00000005550 #11 CST11 (ENSPTIG00000003091) #12 ENSPTIG00000001355 NAPB (ENSPTIG00000019947) #14 GZF1 (ENSPTIG00000019328) #15 NXT1 (ENSPTIG00000003788) #16 CD93 (ENSPTIG00000018580) #17 SSTR4 (ENSPTIG00000003769) #19 PAX1 (ENSPTIG00000017141) #21 NKX2-2 (ENSPTIG00000016807) #22 XRN2 (ENSPTIG00000015683) #24 KIZ (ENSPTIG00000015123) #25 RALGAPA2 (ENSPTIG00000012682) #27 CFAP61 (ENSPTIG00000009217) #29 CRNKL1 (ENSPTIG00000007393) #30 NAA20 (ENSPTIG00000006328) #31 RIN2 (ENSPTIG00000003100) #32 SLC24A3 (ENSPTIG00000021465) #33 SCP2D1 (ENSPTIG00000002789) #34 DTD1 (ENSPTIG00000020971) #35 SEC23B (ENSPTIG00000020593) #37 RBBP9 (ENSPTIG00000020464) POLR3F (ENSPTIG00000020292) DZANK1 (ENSPTIG00000017259) ZNF133 (ENSPTIG00000016359) Panthera_a ANCESTRAL SPECIES 1 ENSGT00940000163249 #8 ENSGT00950000182865.b.a.b.b.a.b ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046.k #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 leopard MODERN SPECIES 39 ENSPPRG00000015946 #8 ENSPPRG00000015501 CST8 (ENSPPRG00000015009) #9 ENSPPRG00000014635 ENSPPRG00000013202 #11 CST11 (ENSPPRG00000011764) #12 ENSPPRG00000011394 NAPB (ENSPPRG00000010805) #14 GZF1 (ENSPPRG00000010040) #15 NXT1 (ENSPPRG00000021392) #16 CD93 (ENSPPRG00000009570) #17 THBD (ENSPPRG00000021378) #18 SSTR4 (ENSPPRG00000021367) #19 FOXA2 (ENSPPRG00000009206) #20 PAX1 (ENSPPRG00000009070) #21 NKX2-2 (ENSPPRG00000008916) #22 NKX2-4 (ENSPPRG00000008761) #23 XRN2 (ENSPPRG00000008732) #24 KIZ (ENSPPRG00000007745) #25 RALGAPA2 (ENSPPRG00000006401) #27 INSM1 (ENSPPRG00000021271) #28 CFAP61 (ENSPPRG00000004321) #29 CRNKL1 (ENSPPRG00000001955) #30 ENSPPRG00000001197 #31 ENSPPRG00000000577 #32 SLC24A3 (ENSPPRG00000022720) #33 SCP2D1 (ENSPPRG00000021046) #34 DTD1 (ENSPPRG00000023943) #35 SEC23B (ENSPPRG00000024318) #37 RBBP9 (ENSPPRG00000024506) POLR3F (ENSPPRG00000024604) lion MODERN SPECIES 3 CST9L (ENSPLOG00000000670) #7 ENSPLOG00000000686 #8 CST8 (ENSPLOG00000000695) #9 ENSPLOG00000000715 ENSPLOG00000000735 #11 CST11 (ENSPLOG00000000758) #12 CSTL1 (ENSPLOG00000000776) #13 NAPB (ENSPLOG00000000809) #14 GZF1 (ENSPLOG00000000839) #15 NXT1 (ENSPLOG00000000844) #16 CD93 (ENSPLOG00000000855) #17 THBD (ENSPLOG00000000869) #18 SSTR4 (ENSPLOG00000000946) #19 FOXA2 (ENSPLOG00000000959) #20 PAX1 (ENSPLOG00000000971) #21 NKX2-2 (ENSPLOG00000000985) #22 NKX2-4 (ENSPLOG00000001002) #23 XRN2 (ENSPLOG00000001042) #24 KIZ (ENSPLOG00000001155) #25 RALGAPA2 (ENSPLOG00000001266) #27 INSM1 (ENSPLOG00000001312) #28 CFAP61 (ENSPLOG00000001356) #29 CRNKL1 (ENSPLOG00000001416) #30 NAA20 (ENSPLOG00000001447) #31 RIN2 (ENSPLOG00000001490) #32 SLC24A3 (ENSPLOG00000001538) #33 DTD1 (ENSPLOG00000001574) #35 SMIM26 (ENSPLOG00000001583) #36 SEC23B (ENSPLOG00000001608) #37 RBBP9 (ENSPLOG00000001658) POLR3F (ENSPLOG00000001687) Cat MODERN SPECIES 2 ENSFCAG00000027887 #8 ENSFCAG00000023071 CST8 (ENSFCAG00000023255) #9 ENSFCAG00000042989 ENSFCAG00000026179 #11 CST11 (ENSFCAG00000003949) #12 CSTL1 (ENSFCAG00000041684) #13 NAPB (ENSFCAG00000037279) #14 GZF1 (ENSFCAG00000006484) #15 NXT1 (ENSFCAG00000006482) #16 CD93 (ENSFCAG00000025238) #17 THBD (ENSFCAG00000011513) #18 SSTR4 (ENSFCAG00000022777) #19 FOXA2 (ENSFCAG00000012368) #20 PAX1 (ENSFCAG00000004293) #21 NKX2-2 (ENSFCAG00000008740) #22 NKX2-4 (ENSFCAG00000045261) #23 XRN2 (ENSFCAG00000007970) #24 KIZ (ENSFCAG00000007966) #25 RALGAPA2 (ENSFCAG00000028385) #27 INSM1 (ENSFCAG00000040680) #28 CFAP61 (ENSFCAG00000000715) #29 CRNKL1 (ENSFCAG00000000714) #30 NAA20 (ENSFCAG00000028113) #31 RIN2 (ENSFCAG00000014527) #32 SLC24A3 (ENSFCAG00000008015) #33 SCP2D1 (ENSFCAG00000003254) #34 ENSFCAG00000051916 DTD1 (ENSFCAG00000013835) #35 SMIM26 (ENSFCAG00000048664) #36 SEC23B (ENSFCAG00000013833) #37 Caniformia ANCESTRAL SPECIES ENSGT00940000161877.m #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Canidae ANCESTRAL SPECIES 19 ENSGT00940000157363.b ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046.j.a #31 ENSGT00940000161804.d.a ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Red fox MODERN SPECIES 40 ENSVVUG00000012055 ENSVVUG00000012058 #8 ENSVVUG00000012060 #9 ENSVVUG00000012064 ENSVVUG00000012067 CST11 (ENSVVUG00000012069) #12 CSTL1 (ENSVVUG00000012073) #13 NAPB (ENSVVUG00000012075) #14 GZF1 (ENSVVUG00000012086) #15 NXT1 (ENSVVUG00000012091) #16 ENSVVUG00000012111 PAX1 (ENSVVUG00000012146) #21 NKX2-2 (ENSVVUG00000012163) #22 ENSVVUG00000012172 #23 XRN2 (ENSVVUG00000012178) #24 KIZ (ENSVVUG00000012190) #25 RALGAPA2 (ENSVVUG00000012242) #27 ENSVVUG00000012364 CFAP61 (ENSVVUG00000012388) #29 ENSVVUG00000012539 CRNKL1 (ENSVVUG00000012559) #30 NAA20 (ENSVVUG00000012582) #31 ENSVVUG00000012599 RIN2 (ENSVVUG00000012604) #32 SLC24A3 (ENSVVUG00000012656) #33 ENSVVUG00000012858 #34 DTD1 (ENSVVUG00000012861) #35 SMIM26 (ENSVVUG00000012870) #36 Canis_lupus ANCESTRAL SPECIES 13 ENSGT00940000157363.b ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT01100000263605.j ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046.j.a #31 ENSGT00940000161804.d.a ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Dingo MODERN SPECIES 343 ENSCAFG00020027456 #8 CST8 (ENSCAFG00020027457) #9 ENSCAFG00020027458 CST11 (ENSCAFG00020027459) #12 CSTL1 (ENSCAFG00020027460) #13 ENSCAFG00020027461 #14 ENSCAFG00020027463 #15 ENSCAFG00020027464 #15 ENSCAFG00020027465 #16 CD93 (ENSCAFG00020027467) #17 THBD (ENSCAFG00020027468) #18 ENSCAFG00020027470 ENSCAFG00020027471 FOXA2 (ENSCAFG00020027472) #20 PAX1 (ENSCAFG00020027475) #21 NKX2-2 (ENSCAFG00020027477) #22 NKX2-4 (ENSCAFG00020027478) #23 XRN2 (ENSCAFG00020027479) #24 KIZ (ENSCAFG00020027480) #25 RALGAPA2 (ENSCAFG00020027484) #27 CFAP61 (ENSCAFG00020027486) #29 ENSCAFG00020027487 CRNKL1 (ENSCAFG00020027488) #30 ENSCAFG00020027489 #31 ENSCAFG00020027490 RIN2 (ENSCAFG00020027491) #32 SLC24A3 (ENSCAFG00020027492) #33 SCP2D1 (ENSCAFG00020027495) #34 DTD1 (ENSCAFG00020027496) #35 SMIM26 (ENSCAFG00020027497) #36 SEC23B (ENSCAFG00020027498) #37 Dog MODERN SPECIES 16 HUS1 (ENSCAFG00845026030) ENSCAFG00845026576 ENSCAFG00845026609 #8 CST8 (ENSCAFG00845026649) #9 ENSCAFG00845026671 CST11 (ENSCAFG00845026760) #12 CSTL1 (ENSCAFG00845026794) #13 NAPB (ENSCAFG00845026852) #14 GZF1 (ENSCAFG00845027001) #15 CD93 (ENSCAFG00845027134) #17 THBD (ENSCAFG00845027195) #18 ENSCAFG00845027219 ENSCAFG00845027242 FOXA2 (ENSCAFG00845027259) #20 PAX1 (ENSCAFG00845027290) #21 NKX2-2 (ENSCAFG00845027437) #22 NKX2-4 (ENSCAFG00845027483) #23 XRN2 (ENSCAFG00845027569) #24 KIZ (ENSCAFG00845028046) #25 RALGAPA2 (ENSCAFG00845028444) #27 CFAP61 (ENSCAFG00845028852) #29 ENSCAFG00845028933 CRNKL1 (ENSCAFG00845028961) #30 NAA20 (ENSCAFG00845029048) #31 ENSCAFG00845029111 RIN2 (ENSCAFG00845029255) #32 SLC24A3 (ENSCAFG00845029352) #33 SCP2D1 (ENSCAFG00845029392) #34 ENSCAFG00845029447 #35 ENSCAFG00845029520 #36 SEC23B (ENSCAFG00845029542) #37 Caniformia_b ANCESTRAL SPECIES ENSGT00940000161877.m.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 Mustelinae ANCESTRAL SPECIES 43 ENSGT00940000161877.m.a #7 ENSGT00940000161877.n #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT01000000221541 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 American mink MODERN SPECIES 460 PAX1 (ENSNVIG00000024342) #21 NKX2-2 (ENSNVIG00000024347) #22 NKX2-4 (ENSNVIG00000024348) #23 XRN2 (ENSNVIG00000024349) #24 KIZ (ENSNVIG00000024357) #25 Ferret MODERN SPECIES 204 ENSMPUG00000001137 #7 ENSMPUG00000001138 #7 ENSMPUG00000001140 CST8 (ENSMPUG00000001143) #9 ENSMPUG00000001151 CST11 (ENSMPUG00000001154) #12 NAPB (ENSMPUG00000001158) #14 GZF1 (ENSMPUG00000001160) #15 NXT1 (ENSMPUG00000019260) #16 CD93 (ENSMPUG00000001163) #17 THBD (ENSMPUG00000019265) #18 SSTR4 (ENSMPUG00000019271) #19 FOXA2 (ENSMPUG00000001166) #20 ENSMPUG00000001167 PAX1 (ENSMPUG00000001187) #21 NKX2-2 (ENSMPUG00000001196) #22 XRN2 (ENSMPUG00000001198) #24 KIZ (ENSMPUG00000001201) #25 ENSMPUG00000019274 ENSMPUG00000001204 RALGAPA2 (ENSMPUG00000001210) #27 INSM1 (ENSMPUG00000001216) #28 CFAP61 (ENSMPUG00000001219) #29 CRNKL1 (ENSMPUG00000001226) #30 NAA20 (ENSMPUG00000001228) #31 RIN2 (ENSMPUG00000001230) #32 ENSMPUG00000001233 SLC24A3 (ENSMPUG00000001234) #33 ENSMPUG00000001236 SCP2D1 (ENSMPUG00000019276) #34 DTD1 (ENSMPUG00000001238) #35 Ursidae ANCESTRAL SPECIES 14 ENSGT00940000161877.m.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 ENSGT00390000009679 Giant Panda MODERN SPECIES 4 ENSAMEG00000009914 #8 CST8 (ENSAMEG00000009906) #9 ENSAMEG00000009904 CST11 (ENSAMEG00000009897) #12 CSTL1 (ENSAMEG00000026681) #13 NAPB (ENSAMEG00000009863) #14 GZF1 (ENSAMEG00000009853) #15 NXT1 (ENSAMEG00000018729) #16 ENSAMEG00000024065 CD93 (ENSAMEG00000009849) #17 THBD (ENSAMEG00000019083) #18 SSTR4 (ENSAMEG00000019048) #19 FOXA2 (ENSAMEG00000015802) #20 ENSAMEG00000031412 PAX1 (ENSAMEG00000012642) #21 NKX2-2 (ENSAMEG00000029802) #22 NKX2-4 (ENSAMEG00000030670) #23 XRN2 (ENSAMEG00000012581) #24 KIZ (ENSAMEG00000012566) #25 RALGAPA2 (ENSAMEG00000000299) #27 CFAP61 (ENSAMEG00000000288) #29 CRNKL1 (ENSAMEG00000000270) #30 NAA20 (ENSAMEG00000000262) #31 RIN2 (ENSAMEG00000000240) #32 SLC24A3 (ENSAMEG00000000234) #33 SCP2D1 (ENSAMEG00000018743) #34 DTD1 (ENSAMEG00000005878) #35 SMIM26 (ENSAMEG00000025598) #36 SEC23B (ENSAMEG00000005865) #37 RBBP9 (ENSAMEG00000005238) POLR3F (ENSAMEG00000005222) Ursus ANCESTRAL SPECIES 191 ENSGT00940000161877.n #7 ENSGT00940000161877.m.b #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000165454 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041 #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 Polar bear MODERN SPECIES 300 ENSUMAG00000004190 #7 ENSUMAG00000004185 #7 ENSUMAG00000004168 #7 ENSUMAG00000004162 #8 CST8 (ENSUMAG00000004155) #9 ENSUMAG00000004147 ENSUMAG00000004140 #11 CST11 (ENSUMAG00000004135) #12 CSTL1 (ENSUMAG00000004128) #13 NAPB (ENSUMAG00000004081) #14 GZF1 (ENSUMAG00000004065) #15 NXT1 (ENSUMAG00000004062) #16 CD93 (ENSUMAG00000004052) #17 SSTR4 (ENSUMAG00000004048) #19 PAX1 (ENSUMAG00000004035) #21 ENSUMAG00000004026 #22 XRN2 (ENSUMAG00000004012) #24 KIZ (ENSUMAG00000003912) #25 ENSUMAG00000003879 #27 American black bear MODERN SPECIES 956 NKX2-2 (ENSUAMG00000024865) #22 ENSUAMG00000024864 #23 XRN2 (ENSUAMG00000024634) #24 KIZ (ENSUAMG00000024603) #25 Atlantogenata ANCESTRAL SPECIES 6 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00940000162636.B #11 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041.l #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Afrotheria ANCESTRAL SPECIES 3 ENSGT00940000154755 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041.l #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 Tenrec MODERN SPECIES 17925 NKX2-2 (ENSETEG00000010501) #22 Afrotheria_a ANCESTRAL SPECIES 3 ENSGT00940000154755 ENSGT00940000161877 #7 ENSGT00940000163249 #8 ENSGT00940000162294 #9 ENSGT00940000162636.A #10 ENSGT00910000144356 #12 ENSGT00900000141212 #13 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000162041.l #16 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 Hyrax MODERN SPECIES 8892 NKX2-2 (ENSPCAG00000008298) #22 Elephant MODERN SPECIES 180 ENSLAFG00000002805 #7 ENSLAFG00000006741 #8 CST8 (ENSLAFG00000002803) #9 ENSLAFG00000030756 #10 ENSLAFG00000008240 #12 CSTL1 (ENSLAFG00000008243) #13 NAPB (ENSLAFG00000002461) #14 GZF1 (ENSLAFG00000002458) #15 NXT1 (ENSLAFG00000029098) #16 CD93 (ENSLAFG00000027545) #17 THBD (ENSLAFG00000012832) #18 ENSLAFG00000032254 #19 FOXA2 (ENSLAFG00000026345) #20 ENSLAFG00000031871 PAX1 (ENSLAFG00000008908) #21 NKX2-2 (ENSLAFG00000002379) #22 ENSLAFG00000014638 #23 XRN2 (ENSLAFG00000014624) #24 KIZ (ENSLAFG00000002389) #25 ENSLAFG00000032497 #27 ENSLAFG00000011596 #27 INSM1 (ENSLAFG00000011594) #28 ENSLAFG00000029531 ENSLAFG00000028424 #29 ENSLAFG00000004520 #29 CRNKL1 (ENSLAFG00000004512) #30 NAA20 (ENSLAFG00000004510) #31 RIN2 (ENSLAFG00000015169) #32 SLC24A3 (ENSLAFG00000012423) #33 SCP2D1 (ENSLAFG00000007035) #34 DTD1 (ENSLAFG00000003645) #35 Xenarthra ANCESTRAL SPECIES 347 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 Armadillo MODERN SPECIES 425 PAX1 (ENSDNOG00000033546) #21 NKX2-2 (ENSDNOG00000038407) #22 ENSDNOG00000025932 NKX2-4 (ENSDNOG00000040998) #23 XRN2 (ENSDNOG00000001895) #24 KIZ (ENSDNOG00000046969) #25 RALGAPA2 (ENSDNOG00000016236) #27 INSM1 (ENSDNOG00000033318) #28 CFAP61 (ENSDNOG00000016231) #29 CRNKL1 (ENSDNOG00000016226) #30 NAA20 (ENSDNOG00000034715) #31 RIN2 (ENSDNOG00000016218) #32 SLC24A3 (ENSDNOG00000016125) #33 ENSDNOG00000004039 Marsupialia ANCESTRAL SPECIES 19 ENSGT01100000263540.A.a ENSGT00940000160793 ENSGT00940000158550 ENSGT00440000039984.a ENSGT00940000160277 ENSGT00950000183147.B ENSGT00940000154755.b ENSGT00940000163249 #8 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931.g #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 ENSGT00390000014861 Marsupialia_b ANCESTRAL SPECIES 9 ENSGT01100000263540.A.a ENSGT00940000160793 ENSGT00940000158550 ENSGT00440000039984.a ENSGT00940000160277 ENSGT00950000183147.B ENSGT00940000154755.b ENSGT00940000163249 #8 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931.g #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Diprotodontia ANCESTRAL SPECIES 2 ENSGT01100000263540.A.a ENSGT00940000160793 ENSGT00940000158550 ENSGT00440000039984.a ENSGT00940000160277 ENSGT00950000183147.B ENSGT00940000154755.b ENSGT00940000163249 #8 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931.g #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 Diprotodontia_a ANCESTRAL SPECIES 2 ENSGT01100000263540.A.a ENSGT00940000160793 ENSGT00940000158550 ENSGT00440000039984.a ENSGT00940000160277 ENSGT00950000183147.B ENSGT00940000154755.b ENSGT00940000163249 #8 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000163276 #18 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931.g #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00860000134050 #36 ENSGT00390000006916.c #37 koala MODERN SPECIES 1 CST7 (ENSPCIG00000035164) SYNDIG1 (ENSPCIG00000008651) ENSPCIG00000008654 ENSPCIG00000036306 ENSPCIG00000013810 #8 ENSPCIG00000013809 NAPB (ENSPCIG00000013805) #14 ENSPCIG00000031294 #15 ENSPCIG00000013803 #15 ENSPCIG00000013801 CD93 (ENSPCIG00000015492) #17 ENSPCIG00000015494 SSTR4 (ENSPCIG00000015498) #19 FOXA2 (ENSPCIG00000025918) #20 PAX1 (ENSPCIG00000031385) #21 NKX2-2 (ENSPCIG00000034162) #22 ENSPCIG00000031596 NKX2-4 (ENSPCIG00000024538) #23 XRN2 (ENSPCIG00000001237) #24 ENSPCIG00000001346 #27 ENSPCIG00000008868 #27 INSM1 (ENSPCIG00000025810) #28 ENSPCIG00000034193 CFAP61 (ENSPCIG00000025813) #29 CRNKL1 (ENSPCIG00000025825) #30 NAA20 (ENSPCIG00000025955) #31 RIN2 (ENSPCIG00000020994) #32 SLC24A3 (ENSPCIG00000018234) #33 SCP2D1 (ENSPCIG00000019128) #34 ENSPCIG00000001009 DTD1 (ENSPCIG00000000993) #35 Common wonbat MODERN SPECIES 1073 CD93 (ENSVURG00010005436) #17 THBD (ENSVURG00010005445) #18 SSTR4 (ENSVURG00010005456) #19 FOXA2 (ENSVURG00010005464) #20 PAX1 (ENSVURG00010005488) #21 NKX2-2 (ENSVURG00010005501) #22 NKX2-4 (ENSVURG00010005513) #23 XRN2 (ENSVURG00010005531) #24 KIZ (ENSVURG00010005599) #25 ENSVURG00010005678 RALGAPA2 (ENSVURG00010005756) #27 INSM1 (ENSVURG00010005820) #28 ENSVURG00010005834 ENSVURG00010005838 ENSVURG00010005844 #29 ENSVURG00010005874 #29 ENSVURG00010005888 #29 ENSVURG00010005903 #30 NAA20 (ENSVURG00010005948) #31 ENSVURG00010005965 RIN2 (ENSVURG00010005982) #32 Wallaby MODERN SPECIES 3299 NKX2-2 (ENSMEUG00000014506) #22 Tasmanian devil MODERN SPECIES 1 VSX1 (ENSSHAG00000027598) ENSSHAG00000031963 ACSS1 (ENSSHAG00000004290) APMAP (ENSSHAG00000002616) ENSSHAG00000000722 SYNDIG1 (ENSSHAG00000026100) ENSSHAG00000032132 ENSSHAG00000031598 NAPB (ENSSHAG00000022875) #14 ENSSHAG00000009367 #15 CD93 (ENSSHAG00000031195) #17 THBD (ENSSHAG00000028423) #18 SSTR4 (ENSSHAG00000012685) #19 FOXA2 (ENSSHAG00000014905) #20 PAX1 (ENSSHAG00000017556) #21 NKX2-2 (ENSSHAG00000004915) #22 NKX2-4 (ENSSHAG00000024664) #23 XRN2 (ENSSHAG00000023603) #24 KIZ (ENSSHAG00000027601) #25 RALGAPA2 (ENSSHAG00000011234) #27 CFAP61 (ENSSHAG00000013786) #29 ENSSHAG00000030457 #30 ENSSHAG00000022346 #31 ENSSHAG00000027541 #30 ENSSHAG00000025214 #31 RIN2 (ENSSHAG00000014834) #32 SLC24A3 (ENSSHAG00000015606) #33 SCP2D1 (ENSSHAG00000017843) #34 DTD1 (ENSSHAG00000028090) #35 SEC23B (ENSSHAG00000018083) #37 RBBP9 (ENSSHAG00000023516) Opossum MODERN SPECIES VSX1 (ENSMODG00000006351) ACSS1 (ENSMODG00000006345) APMAP (ENSMODG00000006313) ENSMODG00000006300 ENSMODG00000044809 SYNDIG1 (ENSMODG00000006293) ENSMODG00000048042 NAPB (ENSMODG00000006277) #14 GZF1 (ENSMODG00000006238) #15 ENSMODG00000044175 #15 CD93 (ENSMODG00000006221) #17 ENSMODG00000023139 #18 SSTR4 (ENSMODG00000023138) #19 FOXA2 (ENSMODG00000006213) #20 PAX1 (ENSMODG00000006198) #21 NKX2-2 (ENSMODG00000006177) #22 NKX2-4 (ENSMODG00000006170) #23 XRN2 (ENSMODG00000006163) #24 ENSMODG00000040034 KIZ (ENSMODG00000006125) #25 ENSMODG00000006089 #27 ENSMODG00000036552 ENSMODG00000050875 ENSMODG00000043419 #27 INSM1 (ENSMODG00000006031) #28 CFAP61 (ENSMODG00000005981) #29 ENSMODG00000005961 #30 NAA20 (ENSMODG00000005931) #31 ENSMODG00000028620 RIN2 (ENSMODG00000005916) #32 SLC24A3 (ENSMODG00000005890) #33 Platypus MODERN SPECIES NT5C1B (ENSOANG00000007019) OSR1 (ENSOANG00000045764) ENSOANG00000007840 CST7 (ENSOANG00000042962) SYNDIG1 (ENSOANG00000010870) ENSOANG00000051113 NAPB (ENSOANG00000000251) #14 ENSOANG00000045902 GZF1 (ENSOANG00000038746) #15 ENSOANG00000022376 #15 ENSOANG00000041257 #17 ENSOANG00000015171 SSTR4 (ENSOANG00000037977) #19 FOXA2 (ENSOANG00000015108) #20 PAX1 (ENSOANG00000002008) #21 ENSOANG00000047729 #22 NKX2-4 (ENSOANG00000048651) #23 XRN2 (ENSOANG00000015673) #24 ENSOANG00000002851 #25 RALGAPA2 (ENSOANG00000002499) #27 INSM1 (ENSOANG00000038669) #28 CFAP61 (ENSOANG00000046492) #29 CRNKL1 (ENSOANG00000031667) #30 NAA20 (ENSOANG00000036301) #31 RIN2 (ENSOANG00000002281) #32 SLC24A3 (ENSOANG00000015699) #33 SCP2D1 (ENSOANG00000003673) #34 DTD1 (ENSOANG00000038993) #35 ENSOANG00000039827 #36 SEC23B (ENSOANG00000008750) #37 ENSOANG00000020618 Sauria ANCESTRAL SPECIES 1 ENSGT00390000013444.a.b.a ENSGT00940000161448 ENSGT00390000001607 ENSGT01090000260080.a ENSGT00390000008327 ENSGT00940000154206.b ENSGT00390000014969 ENSGT00440000033970 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 Lepidosauria ANCESTRAL SPECIES 123 ENSGT00940000156996 #17 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247.b #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 tuatara MODERN SPECIES 1774 PAX1 (ENSSPUG00000005561) #21 NKX2-2 (ENSSPUG00000005539) #22 NKX2-4 (ENSSPUG00000005535) #23 XRN2 (ENSSPUG00000005485) #24 ENSSPUG00000005474 #25 ENSSPUG00000005471 #25 ENSSPUG00000005462 ENSSPUG00000005413 #27 ENSSPUG00000005392 ENSSPUG00000005379 #27 ENSSPUG00000005371 ENSSPUG00000005359 #27 INSM1 (ENSSPUG00000005332) #28 CFAP61 (ENSSPUG00000005289) #29 CRNKL1 (ENSSPUG00000005254) #30 NAA20 (ENSSPUG00000005245) #31 Episquamata ANCESTRAL SPECIES 1 ENSGT00940000153665.a ENSGT00950000182886.b.b ENSGT00940000157811 ENSGT00940000156424 ENSGT00390000015121 ENSGT01030000234607.A.a.a.a ENSGT00940000155822 ENSGT00940000158036 ENSGT00390000014771.a ENSGT00550000074988 ENSGT00940000154755 ENSGT00940000164218 ENSGT00940000156996 #17 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247.b #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00950000183147.B Laterata ANCESTRAL SPECIES 5 ENSGT00940000153665.a ENSGT00950000182886.b.b ENSGT00940000157811 ENSGT00940000156424 ENSGT00390000015121 ENSGT01030000234607.A.a.a.a ENSGT00940000155822 ENSGT00940000158036 ENSGT00390000014771.a ENSGT00550000074988 ENSGT00940000154755 ENSGT00940000164218 ENSGT00940000166261.a ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247.b #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00950000183147.B ENSGT00950000183067.a.a Argentine black and white tegu MODERN SPECIES 36 TENT4A (ENSSMRG00000015539) ADCY2 (ENSSMRG00000015544) ENSSMRG00000016193 CFAP90 (ENSSMRG00000016195) FASTKD3 (ENSSMRG00000016197) MTRR (ENSSMRG00000016199) SEMA5A (ENSSMRG00000016201) ATPSCKMT (ENSSMRG00000016204) CCT5 (ENSSMRG00000016206) ENSSMRG00000016209 CST3 (ENSSMRG00000016211) ENSSMRG00000016212 ENSSMRG00000016213 FOXA2 (ENSSMRG00000016214) #20 PAX1 (ENSSMRG00000016215) #21 NKX2-2 (ENSSMRG00000016217) #22 NKX2-4 (ENSSMRG00000016219) #23 XRN2 (ENSSMRG00000016220) #24 KIZ (ENSSMRG00000017056) #25 ENSSMRG00000017072 RALGAPA2 (ENSSMRG00000017087) #27 ENSSMRG00000018136 CFAP61 (ENSSMRG00000018138) #29 CRNKL1 (ENSSMRG00000018141) #30 NAA20 (ENSSMRG00000018142) #31 RIN2 (ENSSMRG00000018143) #32 SLC24A3 (ENSSMRG00000018144) #33 SCP2D1 (ENSSMRG00000018145) #34 DTD1 (ENSSMRG00000018146) #35 SEC23B (ENSSMRG00000018147) #37 SYNDIG1 (ENSSMRG00000018148) Common wall lizard MODERN SPECIES 15 CFAP90 (ENSPMRG00000020186) FASTKD3 (ENSPMRG00000020182) MTRR (ENSPMRG00000020175) ENSPMRG00000020156 SEMA5A (ENSPMRG00000020146) ENSPMRG00000020140 ENSPMRG00000020136 ENSPMRG00000020132 ATPSCKMT (ENSPMRG00000020115) CCT5 (ENSPMRG00000020104) CST3 (ENSPMRG00000020097) ENSPMRG00000020082 ENSPMRG00000020069 FOXA2 (ENSPMRG00000020065) #20 PAX1 (ENSPMRG00000020057) #21 NKX2-2 (ENSPMRG00000020050) #22 ENSPMRG00000020042 #23 ENSPMRG00000020038 XRN2 (ENSPMRG00000020016) #24 KIZ (ENSPMRG00000020002) #25 RALGAPA2 (ENSPMRG00000019950) #27 CFAP61 (ENSPMRG00000019900) #29 CRNKL1 (ENSPMRG00000019875) #30 NAA20 (ENSPMRG00000019868) #31 RIN2 (ENSPMRG00000019862) #32 SLC24A3 (ENSPMRG00000019844) #33 DTD1 (ENSPMRG00000019836) #35 SEC23B (ENSPMRG00000019825) #37 SYNDIG1 (ENSPMRG00000019820) AFAP1 (ENSPMRG00000019806) SORCS2 (ENSPMRG00000019764) Toxicofera ANCESTRAL SPECIES 1 ENSGT00940000153665.a ENSGT00950000182886.b.b ENSGT00940000157811 ENSGT00940000156424 ENSGT00390000015121 ENSGT01030000234607.A.a.a.a ENSGT00940000155822 ENSGT00940000158036 ENSGT00390000014771.a.h ENSGT00550000074988 ENSGT00940000154755 ENSGT00940000167312 ENSGT00940000156996 #17 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247.b #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00950000183147.B Elapidae ANCESTRAL SPECIES 8 ENSGT00940000153665.a ENSGT00950000182886.b.b ENSGT00940000157811 ENSGT00940000156424 ENSGT00390000015121 ENSGT01030000234607.A.a.a.a ENSGT00940000155822 ENSGT00940000158036 ENSGT00390000014771.a.h ENSGT00550000074988 ENSGT00940000154755 ENSGT00940000167312 ENSGT00940000156996 #17 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247.b #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b.i #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00950000183147.B ENSGT00950000183067.a.a ENSGT01030000234563.b.a.a Elapidae_a ANCESTRAL SPECIES 35 ENSGT00940000153665.a ENSGT00950000182886.b.b ENSGT00940000157811 ENSGT00940000156424 ENSGT00390000015121 ENSGT01030000234607.A.a.a.a ENSGT00940000155822 ENSGT00940000158036 ENSGT00390000014771.a.h ENSGT00550000074988 ENSGT00940000154755 ENSGT00940000167312 ENSGT00940000156996 #17 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247.b #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b.i #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00950000183147.B ENSGT00950000183067.a.a ENSGT01030000234563.b.a.a ENSGT00390000005589.a.a Acanthophiinae ANCESTRAL SPECIES 35 ENSGT00940000161612 ENSGT00940000153665.a ENSGT00950000182886.b.b ENSGT00940000157811 ENSGT00940000156424 ENSGT00390000015121 ENSGT01030000234607.A.a.a.a ENSGT00940000155822 ENSGT00940000158036 ENSGT00390000014771.a.h ENSGT00550000074988 ENSGT00940000154755 ENSGT00940000167312 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247.b #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b.i #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00990000214234 ENSGT00390000006916.c #37 ENSGT00950000183147.B ENSGT00950000183067.a.a ENSGT01030000234563.b.a.a Eastern brown snake MODERN SPECIES 15 UBE2QL1 (ENSPTXG00000004113) NSUN2 (ENSPTXG00000003936) SRD5A1 (ENSPTXG00000003935) TENT4A (ENSPTXG00000003934) ADCY2 (ENSPTXG00000003858) CFAP90 (ENSPTXG00000003856) FASTKD3 (ENSPTXG00000003854) MTRR (ENSPTXG00000003852) SEMA5A (ENSPTXG00000003851) ATPSCKMT (ENSPTXG00000003849) CCT5 (ENSPTXG00000003847) ENSPTXG00000003846 ENSPTXG00000003845 FOXA2 (ENSPTXG00000003844) #20 PAX1 (ENSPTXG00000003840) #21 NKX2-2 (ENSPTXG00000003839) #22 NKX2-4 (ENSPTXG00000003838) #23 XRN2 (ENSPTXG00000003835) #24 RALGAPA2 (ENSPTXG00000003831) #27 CFAP61 (ENSPTXG00000003415) #29 CRNKL1 (ENSPTXG00000003383) #30 RIN2 (ENSPTXG00000003382) #32 SLC24A3 (ENSPTXG00000003380) #33 ENSPTXG00000003379 SCP2D1 (ENSPTXG00000003378) #34 DTD1 (ENSPTXG00000003377) #35 ENSPTXG00000003375 SEC23B (ENSPTXG00000003374) #37 SYNDIG1 (ENSPTXG00000003373) AFAP1 (ENSPTXG00000003371) SORCS2 (ENSPTXG00000003364) Mainland tiger snake MODERN SPECIES 45 SRD5A1 (ENSNSUG00000010410) ENSNSUG00000010413 TENT4A (ENSNSUG00000010414) ADCY2 (ENSNSUG00000010421) ENSNSUG00000010690 FASTKD3 (ENSNSUG00000010691) MTRR (ENSNSUG00000010692) SEMA5A (ENSNSUG00000010721) ATPSCKMT (ENSNSUG00000010722) CCT5 (ENSNSUG00000010732) ENSNSUG00000010733 ENSNSUG00000010734 ENSNSUG00000010735 FOXA2 (ENSNSUG00000010738) #20 PAX1 (ENSNSUG00000010743) #21 NKX2-2 (ENSNSUG00000010747) #22 NKX2-4 (ENSNSUG00000010748) #23 XRN2 (ENSNSUG00000010749) #24 ENSNSUG00000010754 #25 ENSNSUG00000010764 #27 CFAP61 (ENSNSUG00000010774) #29 CRNKL1 (ENSNSUG00000010801) #30 RIN2 (ENSNSUG00000010814) #32 SLC24A3 (ENSNSUG00000010817) #33 ENSNSUG00000010819 SCP2D1 (ENSNSUG00000010820) #34 DTD1 (ENSNSUG00000010823) #35 ENSNSUG00000010825 SEC23B (ENSNSUG00000010828) #37 SYNDIG1 (ENSNSUG00000010850) AFAP1 (ENSNSUG00000010854) Indian cobra MODERN SPECIES 2 SRD5A1 (ENSNNAG00000013987) TENT4A (ENSNNAG00000013975) ADCY2 (ENSNNAG00000012796) CFAP90 (ENSNNAG00000012693) FASTKD3 (ENSNNAG00000012636) MTRR (ENSNNAG00000012393) SEMA5A (ENSNNAG00000012300) ENSNNAG00000012269 CCT5 (ENSNNAG00000012242) ENSNNAG00000012223 ENSNNAG00000012207 ENSNNAG00000012195 #17 FOXA2 (ENSNNAG00000012180) #20 PAX1 (ENSNNAG00000012128) #21 ENSNNAG00000012106 NKX2-2 (ENSNNAG00000012093) #22 NKX2-4 (ENSNNAG00000012057) #23 XRN2 (ENSNNAG00000011585) #24 RALGAPA2 (ENSNNAG00000010761) #27 CFAP61 (ENSNNAG00000010625) #29 ENSNNAG00000010579 CRNKL1 (ENSNNAG00000010521) #30 RIN2 (ENSNNAG00000010471) #32 SLC24A3 (ENSNNAG00000010197) #33 SCP2D1 (ENSNNAG00000010155) #34 DTD1 (ENSNNAG00000010119) #35 SEC23B (ENSNNAG00000010054) #37 SYNDIG1 (ENSNNAG00000010041) AFAP1 (ENSNNAG00000009998) SORCS2 (ENSNNAG00000009900) GRPEL1 (ENSNNAG00000009878) Lizard MODERN SPECIES 3 ENSACAG00000044221 ADCY2 (ENSACAG00000010038) ENSACAG00000021000 FASTKD3 (ENSACAG00000010201) MTRR (ENSACAG00000010211) SEMA5A (ENSACAG00000010350) ENSACAG00000037363 ENSACAG00000010474 ENSACAG00000041598 CCT5 (ENSACAG00000010488) ENSACAG00000021112 ENSACAG00000023847 ENSACAG00000043135 FOXA2 (ENSACAG00000012163) #20 PAX1 (ENSACAG00000010563) #21 NKX2-2 (ENSACAG00000005697) #22 XRN2 (ENSACAG00000005565) #24 KIZ (ENSACAG00000028994) #25 ENSACAG00000029173 RALGAPA2 (ENSACAG00000005439) #27 CFAP61 (ENSACAG00000005383) #29 ENSACAG00000042716 CRNKL1 (ENSACAG00000005284) #30 NAA20 (ENSACAG00000005272) #31 RIN2 (ENSACAG00000005226) #32 ENSACAG00000041292 ENSACAG00000042539 SLC24A3 (ENSACAG00000005176) #33 SCP2D1 (ENSACAG00000045395) #34 DTD1 (ENSACAG00000007143) #35 SEC23B (ENSACAG00000007168) #37 Archelosauria ANCESTRAL SPECIES 1 ENSGT00390000013444.a.b.a ENSGT00940000161448 ENSGT00390000001607 ENSGT01090000260080.a ENSGT00390000008327 ENSGT00940000154206.b ENSGT00390000014969 ENSGT00440000033970 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 Archosauria ANCESTRAL SPECIES 45 ENSGT01030000235482 ENSGT00940000157865 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 Aves ANCESTRAL SPECIES 56 ENSGT00940000162755 ENSGT00940000157865 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 Neognathae ANCESTRAL SPECIES 32 ENSGT00960000189565 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 ENSGT00550000075046 #31 Neognathae_b ANCESTRAL SPECIES 32 ENSGT00390000003178 ENSGT00960000189565 ENSGT01030000235482 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 ENSGT00550000075046 #31 Passeriformes ANCESTRAL SPECIES 31 ENSGT00940000157865 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 Passeriformes_d ANCESTRAL SPECIES 32 ENSGT00390000007701 ENSGT00940000162755 ENSGT00940000157865 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 Passeriformes_g ANCESTRAL SPECIES 37 ENSGT00390000007701 ENSGT00940000162755 ENSGT00940000157865 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00960000189741 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 Passeroidea ANCESTRAL SPECIES 34 ENSGT00390000007701 ENSGT00940000162755 ENSGT00940000157865 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00960000189741 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 Zebra finch MODERN SPECIES 23 NPHP1 (ENSTGUG00000007320) ENSTGUG00000025973 ENSTGUG00000007338 ENSTGUG00000007339 BCL2L11 (ENSTGUG00000029584) ANAPC1 (ENSTGUG00000007360) MERTK (ENSTGUG00000007420) FBLN7 (ENSTGUG00000007459) ZC3H6 (ENSTGUG00000007468) NAPB (ENSTGUG00000007487) #14 GZF1 (ENSTGUG00000007503) #15 CD93 (ENSTGUG00000007522) #17 SSTR4 (ENSTGUG00000027392) #19 FOXA2 (ENSTGUG00000007523) #20 PAX1 (ENSTGUG00000007526) #21 NKX2-2 (ENSTGUG00000007528) #22 NKX2-4 (ENSTGUG00000007530) #23 XRN2 (ENSTGUG00000007535) #24 RALGAPA2 (ENSTGUG00000007590) #27 CFAP61 (ENSTGUG00000007628) #29 CRNKL1 (ENSTGUG00000007645) #30 SLC24A3 (ENSTGUG00000007669) #33 RIN2 (ENSTGUG00000007689) #32 KCNK16 (ENSTGUG00000007716) KCNK17 (ENSTGUG00000029644) KCNK5 (ENSTGUG00000007722) SAYSD1 (ENSTGUG00000021592) GLP1R (ENSTGUG00000007730) DNAH8 (ENSTGUG00000007770) GLO1 (ENSTGUG00000007808) BTBD9 (ENSTGUG00000007817) Neognathae_c ANCESTRAL SPECIES 35 ENSGT00940000157865 ENSGT00960000189565 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 ENSGT00550000075046 #31 Kakapo MODERN SPECIES 23 ENSSHBG00005003982 BUB1 (ENSSHBG00005004013) BCL2L11 (ENSSHBG00005004035) ANAPC1 (ENSSHBG00005004106) MERTK (ENSSHBG00005004201) FBLN7 (ENSSHBG00005004208) ZC3H6 (ENSSHBG00005004214) NAPB (ENSSHBG00005004226) #14 GZF1 (ENSSHBG00005004233) #15 ENSSHBG00005004244 #15 CD93 (ENSSHBG00005004250) #17 ENSSHBG00005004256 SSTR4 (ENSSHBG00005004259) #19 FOXA2 (ENSSHBG00005004262) #20 PAX1 (ENSSHBG00005004267) #21 NKX2-2 (ENSSHBG00005004272) #22 NKX2-4 (ENSSHBG00005004276) #23 XRN2 (ENSSHBG00005004281) #24 KIZ (ENSSHBG00005004290) #25 RALGAPA2 (ENSSHBG00005004387) #27 CFAP61 (ENSSHBG00005004844) #29 ENSSHBG00005004852 CRNKL1 (ENSSHBG00005004860) #30 SLC24A3 (ENSSHBG00005004870) #33 RIN2 (ENSSHBG00005004874) #32 Golden eagle MODERN SPECIES 24 ENSACCG00020005788 ANAPC1 (ENSACCG00020005824) MERTK (ENSACCG00020005872) FBLN7 (ENSACCG00020005894) ENSACCG00020005911 ENSACCG00020005918 ENSACCG00020005936 NAPB (ENSACCG00020005953) #14 GZF1 (ENSACCG00020005972) #15 ENSACCG00020005987 #15 CD93 (ENSACCG00020006004) #17 ENSACCG00020006015 SSTR4 (ENSACCG00020006025) #19 FOXA2 (ENSACCG00020006036) #20 PAX1 (ENSACCG00020006045) #21 NKX2-2 (ENSACCG00020006058) #22 NKX2-4 (ENSACCG00020006068) #23 XRN2 (ENSACCG00020006117) #24 KIZ (ENSACCG00020006182) #25 RALGAPA2 (ENSACCG00020006230) #27 CFAP61 (ENSACCG00020006273) #29 CRNKL1 (ENSACCG00020006304) #30 SLC24A3 (ENSACCG00020006342) #33 RIN2 (ENSACCG00020006417) #32 NAA20 (ENSACCG00020006429) #31 C2CD2L (ENSACCG00020006443) DPAGT1 (ENSACCG00020006457) H2AX (ENSACCG00020006466) HMBS (ENSACCG00020006483) VPS11 (ENSACCG00020006501) DDX6 (ENSACCG00020006520) Galloanserae ANCESTRAL SPECIES 29 ENSGT00960000189565 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 Anatidae ANCESTRAL SPECIES 45 ENSGT00940000162755 ENSGT00940000157865 ENSGT01030000235482 ENSGT00390000003178 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 Pink-footed goose MODERN SPECIES 117 MALL (ENSABRG00000012466) NPHP1 (ENSABRG00000012031) BUB1 (ENSABRG00000011694) ENSABRG00000011634 ANAPC1 (ENSABRG00000011610) MERTK (ENSABRG00000011592) FBLN7 (ENSABRG00000011583) ZC3H6 (ENSABRG00000011566) NAPB (ENSABRG00000011550) #14 GZF1 (ENSABRG00000011534) #15 CD93 (ENSABRG00000011523) #17 ENSABRG00000011520 SSTR4 (ENSABRG00000011516) #19 FOXA2 (ENSABRG00000011501) #20 PAX1 (ENSABRG00000011485) #21 NKX2-2 (ENSABRG00000011480) #22 NKX2-4 (ENSABRG00000011475) #23 XRN2 (ENSABRG00000011465) #24 ENSABRG00000011461 #25 RALGAPA2 (ENSABRG00000007031) #27 INSM1 (ENSABRG00000006785) #28 CFAP61 (ENSABRG00000006636) #29 CRNKL1 (ENSABRG00000006550) #30 SLC24A3 (ENSABRG00000006519) #33 RIN2 (ENSABRG00000006510) #32 Duck MODERN SPECIES 3198 ENSAPLG00000024215 #22 Phasianidae ANCESTRAL SPECIES 29 ENSGT00940000157865 ENSGT00960000189565 ENSGT01030000235482 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 ENSGT00950000183148.b.b ENSGT00940000160517 ENSGT01030000234620.a.a.a.b ENSGT00390000016927 ENSGT00940000157952 ENSGT00530000064165.b Japanese quail DUPLICATION Japanese quail MODERN SPECIES 604 ENSCJPG00005006711 #22 Japanese quail MODERN SPECIES 21 ENSCJPG00005015849 BUB1 (ENSCJPG00005015844) ENSCJPG00005015843 ENSCJPG00005015842 ANAPC1 (ENSCJPG00005015837) MERTK (ENSCJPG00005015833) FBLN7 (ENSCJPG00005015831) ZC3H6 (ENSCJPG00005015830) NAPB (ENSCJPG00005015828) #14 GZF1 (ENSCJPG00005015826) #15 ENSCJPG00005015825 #15 CD93 (ENSCJPG00005015799) #17 ENSCJPG00005015797 SSTR4 (ENSCJPG00005015795) #19 FOXA2 (ENSCJPG00005015793) #20 ENSCJPG00005015788 #22 NKX2-4 (ENSCJPG00005015785) #23 XRN2 (ENSCJPG00005015783) #24 KIZ (ENSCJPG00005015757) #25 RALGAPA2 (ENSCJPG00005015594) #27 INSM1 (ENSCJPG00005015593) #28 CFAP61 (ENSCJPG00005015592) #29 CRNKL1 (ENSCJPG00005015591) #30 SLC24A3 (ENSCJPG00005015590) #33 RIN2 (ENSCJPG00005015589) #32 PYGB (ENSCJPG00005015588) ABHD12 (ENSCJPG00005015587) MEA1 (ENSCJPG00005015586) PPP2R5D (ENSCJPG00005015454) ENSCJPG00005015450 KLHDC3 (ENSCJPG00005015449) Phasianidae_b ANCESTRAL SPECIES 28 ENSGT00940000157865 ENSGT00960000189565 ENSGT01030000235482 ENSGT00390000016757 ENSGT00940000155669 ENSGT00830000128368.a ENSGT00940000157396 ENSGT01030000234543.E ENSGT00390000005826.a.b #14 ENSGT00870000136554 #15 ENSGT00940000156996 #17 ENSGT00940000166261 ENSGT00940000156819.a.a #19 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154866.B #32 ENSGT00950000183148.b.b ENSGT00940000160517 ENSGT01030000234620.a.a.a.b ENSGT00390000016927 ENSGT00940000157952 ENSGT00530000064165.b Chicken MODERN SPECIES 22 BUB1 (ENSGALG00010017024) ENSGALG00010019362 ENSGALG00010016570 ANAPC1 (ENSGALG00010017890) MERTK (ENSGALG00010017922) FBLN7 (ENSGALG00010017950) ZC3H8 (ENSGALG00010018002) NAPB (ENSGALG00010018019) #14 ENSGALG00010018028 GZF1 (ENSGALG00010018037) #15 CD248 (ENSGALG00010019399) #17 SSTR4 (ENSGALG00010018057) #19 ENSGALG00010018067 FOXA2 (ENSGALG00010018076) #20 PAX1 (ENSGALG00010018083) #21 NKX2-2 (ENSGALG00010018111) #22 NKX2-4 (ENSGALG00010018125) #23 XRN2 (ENSGALG00010018148) #24 KIZ (ENSGALG00010018206) #25 RALGAPA2 (ENSGALG00010018241) #27 CFAP61 (ENSGALG00010018264) #29 INSM1 (ENSGALG00010018279) #28 CRNKL1 (ENSGALG00010018288) #30 SLC24A3 (ENSGALG00010018314) #33 RIN2 (ENSGALG00010018351) #32 PYGB (ENSGALG00010018376) ABHD12 (ENSGALG00010018399) PPP2R5D (ENSGALG00010018428) MEA1 (ENSGALG00010018440) KLHDC3 (ENSGALG00010018448) ENSGALG00010018476 Turkey MODERN SPECIES 339 ENSMGAG00000018710 #22 Australian saltwater crocodile MODERN SPECIES 49 BUB1 (ENSCPRG00005012038) ENSCPRG00005012033 ANAPC1 (ENSCPRG00005011214) MERTK (ENSCPRG00005011095) FBLN7 (ENSCPRG00005011087) ZC3H6 (ENSCPRG00005011052) ATL2 (ENSCPRG00005011048) NAPB (ENSCPRG00005011045) #14 GZF1 (ENSCPRG00005011042) #15 ENSCPRG00005011032 #15 ENSCPRG00005011030 ENSCPRG00005011023 SSTR4 (ENSCPRG00005011021) #19 FOXA2 (ENSCPRG00005011011) #20 PAX1 (ENSCPRG00005011002) #21 NKX2-2 (ENSCPRG00005010983) #22 ENSCPRG00005010979 ENSCPRG00005010975 #23 ENSCPRG00005010970 #23 XRN2 (ENSCPRG00005010683) #24 KIZ (ENSCPRG00005010629) #25 ENSCPRG00005010578 ENSCPRG00005010575 RALGAPA2 (ENSCPRG00005010555) #27 CFAP61 (ENSCPRG00005010399) #29 CRNKL1 (ENSCPRG00005010333) #30 NAA20 (ENSCPRG00005010325) #31 RIN2 (ENSCPRG00005010315) #32 SLC24A3 (ENSCPRG00005010233) #33 SCP2D1 (ENSCPRG00005010201) #34 DTD1 (ENSCPRG00005010193) #35 Cryptodira ANCESTRAL SPECIES 44 ENSGT00940000157908 ENSGT00400000022158 ENSGT00940000160981 ENSGT00940000156883 ENSGT00390000006619 ENSGT00940000162759 ENSGT00940000155423 ENSGT00940000155483 ENSGT00390000015299.a.b.b.b ENSGT00940000162755 ENSGT00390000007551 ENSGT00390000007701 ENSGT00940000161444 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 Testudinoidea ANCESTRAL SPECIES ENSGT00400000022158 ENSGT00940000153954.d.f.b ENSGT00940000160981 ENSGT00940000156883 ENSGT00390000006619 ENSGT00940000162759 ENSGT00940000155423 ENSGT00940000155483 ENSGT00390000015299.a.b.b.b ENSGT00940000162755 ENSGT00390000007551 ENSGT00390000007701 ENSGT00940000161444 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 Testudinidae ANCESTRAL SPECIES 6 ENSGT00400000022158 ENSGT00940000153954.d.f.b ENSGT00940000160981 ENSGT00940000156883 ENSGT00390000006619 ENSGT00940000162759 ENSGT00940000155423 ENSGT00940000155483.g ENSGT00390000015299.a.b.b.b ENSGT00940000162755 ENSGT00390000007551 ENSGT00390000007701 ENSGT00940000161444 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT01000000215777 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 Goode s thornscrub tortoise MODERN SPECIES 17 SRF (ENSGEVG00005018421) ENSGEVG00005018131 TTBK1 (ENSGEVG00005017956) DHX57 (ENSGEVG00005017880) MORN2 (ENSGEVG00005017839) ARHGEF33 (ENSGEVG00005017726) SOS1 (ENSGEVG00005017656) MAP4K3 (ENSGEVG00005017502) TMEM178A (ENSGEVG00005017432) ENSGEVG00005017333 MTLN (ENSGEVG00005017304) NPHP1 (ENSGEVG00005017269) MALL (ENSGEVG00005017245) FOXA2 (ENSGEVG00005017225) #20 PAX1 (ENSGEVG00005017194) #21 NKX2-2 (ENSGEVG00005017179) #22 NKX2-4 (ENSGEVG00005017157) #23 XRN2 (ENSGEVG00005017099) #24 KIZ (ENSGEVG00005017056) #25 RALGAPA2 (ENSGEVG00005016920) #27 INSM1 (ENSGEVG00005016876) #28 ENSGEVG00005016856 CFAP61 (ENSGEVG00005016813) #29 ENSGEVG00005016799 CRNKL1 (ENSGEVG00005016766) #30 NAA20 (ENSGEVG00005016744) #31 RIN2 (ENSGEVG00005016686) #32 SLC24A3 (ENSGEVG00005016547) #33 SCP2D1 (ENSGEVG00005016532) #34 DTD1 (ENSGEVG00005016506) #35 SEC23B (ENSGEVG00005016472) #37 Abingdon island giant tortoise MODERN SPECIES 1558 TTBK1 (ENSCABG00000020350) DHX57 (ENSCABG00000020353) MORN2 (ENSCABG00000020392) ARHGEF33 (ENSCABG00000020394) SOS1 (ENSCABG00000020408) ENSCABG00000020469 ENSCABG00000020476 TMEM178A (ENSCABG00000020479) ENSCABG00000020480 MTLN (ENSCABG00000020482) NPHP1 (ENSCABG00000020484) MALL (ENSCABG00000020487) FOXA2 (ENSCABG00000020491) #20 PAX1 (ENSCABG00000020492) #21 NKX2-2 (ENSCABG00000020493) #22 NKX2-4 (ENSCABG00000020494) #23 XRN2 (ENSCABG00000020495) #24 ENSCABG00000020497 #25 RALGAPA2 (ENSCABG00000020498) #27 ENSCABG00000020512 INSM1 (ENSCABG00000020513) #28 ENSCABG00000020514 Emydidae ANCESTRAL SPECIES 41 ENSGT00400000022158 ENSGT00940000153954.d.e.a ENSGT00940000160981 ENSGT00940000156883 ENSGT00390000006619 ENSGT00940000162759 ENSGT00940000155423 ENSGT00940000155483 ENSGT00390000015299.a.b.b.b ENSGT00940000162755 ENSGT00390000007551 ENSGT00390000007701 ENSGT00940000161444 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000154327.b.e.b #34 ENSGT00940000153431.b #35 ENSGT00390000006916.c #37 ENSGT00390000014861 painted turtle MODERN SPECIES 12 DPY30 (ENSCPBG00000023611) MEMO1 (ENSCPBG00000023609) TTBK1 (ENSCPBG00000023603) DHX57 (ENSCPBG00000023598) MORN2 (ENSCPBG00000023595) ARHGEF33 (ENSCPBG00000023587) SOS1 (ENSCPBG00000023579) MAP4K3 (ENSCPBG00000023569) TMEM178A (ENSCPBG00000023565) ENSCPBG00000023559 MTLN (ENSCPBG00000023558) NPHP1 (ENSCPBG00000023552) MALL (ENSCPBG00000023547) FOXA2 (ENSCPBG00000023545) #20 PAX1 (ENSCPBG00000023543) #21 NKX2-2 (ENSCPBG00000023541) #22 NKX2-4 (ENSCPBG00000023539) #23 XRN2 (ENSCPBG00000023533) #24 KIZ (ENSCPBG00000023528) #25 ENSCPBG00000023521 RALGAPA2 (ENSCPBG00000023514) #27 INSM1 (ENSCPBG00000023510) #28 CFAP61 (ENSCPBG00000023506) #29 CRNKL1 (ENSCPBG00000023501) #30 NAA20 (ENSCPBG00000023498) #31 RIN2 (ENSCPBG00000023491) #32 SCP2D1 (ENSCPBG00000023485) #34 DTD1 (ENSCPBG00000023483) #35 SEC23B (ENSCPBG00000023477) #37 RBBP9 (ENSCPBG00000023475) POLR3F (ENSCPBG00000023473) Three-toed box turtle MODERN SPECIES 62 SRF (ENSTMTG00000012251) TTBK1 (ENSTMTG00000012279) DHX57 (ENSTMTG00000012331) MORN2 (ENSTMTG00000012368) ARHGEF33 (ENSTMTG00000012387) SOS1 (ENSTMTG00000012507) MAP4K3 (ENSTMTG00000012813) TMEM178A (ENSTMTG00000012943) ENSTMTG00000012974 MTLN (ENSTMTG00000012999) ENSTMTG00000013008 NPHP1 (ENSTMTG00000013032) MALL (ENSTMTG00000013173) FOXA2 (ENSTMTG00000013199) #20 PAX1 (ENSTMTG00000013220) #21 NKX2-2 (ENSTMTG00000013238) #22 NKX2-4 (ENSTMTG00000013245) #23 XRN2 (ENSTMTG00000013258) #24 KIZ (ENSTMTG00000013304) #25 ENSTMTG00000013351 RALGAPA2 (ENSTMTG00000013368) #27 INSM1 (ENSTMTG00000013443) #28 CFAP61 (ENSTMTG00000013481) #29 CRNKL1 (ENSTMTG00000013822) #30 NAA20 (ENSTMTG00000013839) #31 RIN2 (ENSTMTG00000013852) #32 SLC24A3 (ENSTMTG00000013883) #33 SCP2D1 (ENSTMTG00000013925) #34 SEC23B (ENSTMTG00000013927) #37 RBBP9 (ENSTMTG00000013948) POLR3F (ENSTMTG00000013956) Chinese turtle MODERN SPECIES 538 TTBK1 (ENSPSIG00000017019) DHX57 (ENSPSIG00000016846) MORN2 (ENSPSIG00000016605) ENSPSIG00000000288 ARHGEF33 (ENSPSIG00000016062) ENSPSIG00000015972 SOS1 (ENSPSIG00000012684) MAP4K3 (ENSPSIG00000006139) TMEM178A (ENSPSIG00000006050) ENSPSIG00000017657 NPHP1 (ENSPSIG00000016164) MALL (ENSPSIG00000015513) ENSPSIG00000000279 ENSPSIG00000015386 NKX2-2 (ENSPSIG00000015250) #22 XRN2 (ENSPSIG00000014666) #24 KIZ (ENSPSIG00000014203) #25 Anura ANCESTRAL SPECIES 116 ENSGT00950000183000.c.a.a ENSGT00940000163054 ENSGT00940000166023 ENSGT00390000005232 ENSGT00390000007335 ENSGT00390000003153 ENSGT00530000064165.a ENSGT00950000182898.a.a.a.a.a ENSGT00940000157679 ENSGT00940000161779 ENSGT00940000161834 ENSGT00390000000610 ENSGT00940000162405 ENSGT00940000155999 #20 ENSGT00940000159137 #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000154866.B #32 ENSGT01030000234532.A.a.a.b #33 ENSGT00940000153431.b #35 ENSGT00940000163377.b.a Leishan spiny toad DUPLICATION Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 6 PHTF2 (ENSLLEG00000021579) ENSLLEG00000021524 MAGI2 (ENSLLEG00000021082) ENSLLEG00000021040 ENSLLEG00000020995 ENSLLEG00000020964 ENSLLEG00000020799 ENSLLEG00000020778 ENSLLEG00000020730 CD36 (ENSLLEG00000020512) SEMA3C (ENSLLEG00000020326) ENSLLEG00000019442 HGF (ENSLLEG00000019280) CACNA2D1 (ENSLLEG00000017804) ENSLLEG00000017714 ENSLLEG00000017653 #22 PCLO (ENSLLEG00000016539) ENSLLEG00000016426 SEMA3E (ENSLLEG00000016288) ENSLLEG00000016241 SEMA3A (ENSLLEG00000015937) ENSLLEG00000015914 SEMA3D (ENSLLEG00000015757) ENSLLEG00000015727 ENSLLEG00000015693 GRM3 (ENSLLEG00000015613) ELAPOR2 (ENSLLEG00000015426) DMTF1 (ENSLLEG00000014930) ENSLLEG00000014860 ENSLLEG00000014793 MEIG1 (ENSLLEG00000014762) Leishan spiny toad MODERN SPECIES ENSLLEG00000001294 LMNB2 (ENSLLEG00000001327) TIMM13 (ENSLLEG00000001377) TMPRSS9 (ENSLLEG00000001418) ENSLLEG00000001463 SPPL2B (ENSLLEG00000001488) LSM7 (ENSLLEG00000001566) ENSLLEG00000001635 ENSLLEG00000001652 ENSLLEG00000001715 ENSLLEG00000001878 ENSLLEG00000001893 SLC20A2 (ENSLLEG00000001933) ENSLLEG00000002032 KCMF1 (ENSLLEG00000002059) ENSLLEG00000002109 #22 FNTA (ENSLLEG00000002129) POMK (ENSLLEG00000002153) HGSNAT (ENSLLEG00000002203) INTS10 (ENSLLEG00000002389) CSGALNACT1 (ENSLLEG00000002574) SH2D4A (ENSLLEG00000002624) ENSLLEG00000002660 ENSLLEG00000002675 ENSLLEG00000002697 ENSLLEG00000002708 ENSLLEG00000002727 ENSLLEG00000002736 ENSLLEG00000002770 ENSLLEG00000002912 ENSLLEG00000002990 Leishan spiny toad MODERN SPECIES 7 ENSLLEG00000005603 BCL11A (ENSLLEG00000005447) ENSLLEG00000005411 ENSLLEG00000005385 FANCL (ENSLLEG00000005345) VRK2 (ENSLLEG00000018470) ENSLLEG00000018431 CCDC85A (ENSLLEG00000018345) EFEMP1 (ENSLLEG00000018149) PNPT1 (ENSLLEG00000017678) ENSLLEG00000016780 FOXA2 (ENSLLEG00000016660) #20 ENSLLEG00000016621 ENSLLEG00000016607 PAX1 (ENSLLEG00000016501) #21 ENSLLEG00000016343 #22 NKX2-4 (ENSLLEG00000016310) #23 XRN2 (ENSLLEG00000015999) #24 ENSLLEG00000015977 KIZ (ENSLLEG00000015612) #25 ENSLLEG00000015576 ENSLLEG00000015448 RALGAPA2 (ENSLLEG00000013982) #27 INSM1 (ENSLLEG00000013867) #28 ENSLLEG00000013844 ENSLLEG00000013836 ENSLLEG00000013817 CFAP61 (ENSLLEG00000013663) #29 ENSLLEG00000013641 CRNKL1 (ENSLLEG00000013452) #30 ATL2 (ENSLLEG00000012905) Frog MODERN SPECIES 5 ENSXETG00000047660 papolg (ENSXETG00000002208) bcl11a (ENSXETG00000002206) ENSXETG00000043268 ENSXETG00000020482 fancl (ENSXETG00000020481) vrk2 (ENSXETG00000020477) CCDC85A (ENSXETG00000006078) efemp1 (ENSXETG00000006076) dusp16 (ENSXETG00000006075) ppp4r3b (ENSXETG00000006072) cfap36 (ENSXETG00000006071) foxa2 (ENSXETG00000026998) #20 ENSXETG00000049453 pax1 (ENSXETG00000023497) #21 nkx2-2 (ENSXETG00000023499) #22 nkx2-4 (ENSXETG00000046545) #23 xrn2 (ENSXETG00000023501) #24 ENSXETG00000045298 kiz (ENSXETG00000023506) #25 ENSXETG00000036108 ENSXETG00000045769 ralgapa2 (ENSXETG00000027617) #27 insm1 (ENSXETG00000040150) #28 cfap61 (ENSXETG00000009697) #29 crnkl1 (ENSXETG00000009698) #30 naa20 (ENSXETG00000037147) #31 rin2 (ENSXETG00000009700) #32 slc24a3 (ENSXETG00000000793) #33 dtd1 (ENSXETG00000000790) #35 ENSXETG00000048226 Coelacanth MODERN SPECIES 3463 NKX2-2 (ENSLACG00000002767) #22 Actinopterygii ANCESTRAL SPECIES 27 ENSGT00390000003107.a ENSGT00940000160847 ENSGT00800000125320 ENSGT00950000183024.a.a.b ENSGT00390000001588 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000155999 #20 ENSGT00940000159137.b #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00940000167996 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926 ENSGT00940000154923.C ENSGT00940000154550.a ENSGT00390000004660.C.a.a ENSGT00950000182852.A.a.a Reedfish MODERN SPECIES 11 ankrd6b (ENSECRG00000003656) rragd (ENSECRG00000003644) ube2j1 (ENSECRG00000003639) gabrr2a (ENSECRG00000003631) gabrr1 (ENSECRG00000003623) PM20D2 (ENSECRG00000003611) PNRC1 (ENSECRG00000003599) rngtt (ENSECRG00000003594) cnr1 (ENSECRG00000003588) akirin2 (ENSECRG00000003577) ORC3 (ENSECRG00000003556) RARS2 (ENSECRG00000003499) slc35a1 (ENSECRG00000003460) cfap206 (ENSECRG00000003415) pax1a (ENSECRG00000003390) #21 nkx2.2a (ENSECRG00000003378) #22 nkx2.4a (ENSECRG00000003374) #23 xrn2 (ENSECRG00000003348) #24 ENSECRG00000003335 #25 ENSECRG00000003325 ENSECRG00000003318 ENSECRG00000003311 ENSECRG00000003297 #27 insm1b (ENSECRG00000003285) #28 ENSECRG00000003281 CFAP61 (ENSECRG00000003266) #29 ENSECRG00000003253 #29 crnkl1 (ENSECRG00000003231) #30 naa20 (ENSECRG00000003211) #31 CD109 (ENSECRG00000002215) ENSECRG00000001944 Neopterygii ANCESTRAL SPECIES 5 ENSGT00950000183142.a.b.a.a ENSGT00940000161252 ENSGT00940000157012 ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00800000125320 ENSGT00950000183024.a.a.b ENSGT00390000001588 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000155999 #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247 #23 ENSGT00670000098098 #24 ENSGT00390000010121 #25 ENSGT00400000024959 ENSGT00950000183139.A #27 ENSGT00940000162552 #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926 ENSGT00940000154923.C ENSGT00940000154550.a ENSGT00390000004660.C.a.a ENSGT00950000182852.A.a.a ENSGT00940000155724.r Spotted gar MODERN SPECIES 647 tmem242 (ENSLOCG00000016844) arid1b (ENSLOCG00000016845) ENSLOCG00000016847 NOX3 (ENSLOCG00000016849) tfb1m (ENSLOCG00000016850) TIAM2 (ENSLOCG00000016852) SCAF8 (ENSLOCG00000016856) ENSLOCG00000016857 mocs3 (ENSLOCG00000016860) ENSLOCG00000016863 PRKD3 (ENSLOCG00000016864) ndufaf7 (ENSLOCG00000016865) cebpz (ENSLOCG00000016867) foxa2 (ENSLOCG00000016870) #20 pax1a (ENSLOCG00000016871) #21 nkx2.2a (ENSLOCG00000016872) #22 nkx2.4a (ENSLOCG00000016873) #23 xrn2 (ENSLOCG00000016874) #24 kiz (ENSLOCG00000016881) #25 ENSLOCG00000016882 RALGAPA2 (ENSLOCG00000016884) #27 insm1b (ENSLOCG00000018009) #28 CFAP61 (ENSLOCG00000016887) #29 crnkl1 (ENSLOCG00000016889) #30 naa20 (ENSLOCG00000016890) #31 CD109 (ENSLOCG00000016893) COL12A1 (ENSLOCG00000016895) cox7a2a (ENSLOCG00000016899) tmem30ab (ENSLOCG00000016901) FILIP1 (ENSLOCG00000016903) SENP6 (ENSLOCG00000016904) Osteoglossocephalai ANCESTRAL SPECIES 245 ENSGT00940000155727.o.a ENSGT00940000156483.h.a ENSGT00940000155634.q.a ENSGT00940000160501 ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 Clupeocephala ANCESTRAL SPECIES 217 ENSGT00940000155727.o.a ENSGT00940000156483.h.a ENSGT00940000155634.q.a ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00390000008195 ENSGT00390000002448 ENSGT00730000111137 ENSGT00940000155671.y.a ENSGT00940000157666 ENSGT00940000164908 ENSGT01030000234667.b.f.b Otomorpha ANCESTRAL SPECIES 77 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT00940000163429.A ENSGT00940000163429.C ENSGT00800000125320 ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000155999.e.b #20 ENSGT00940000159137.b.b #21 ENSGT00940000159727 #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00940000177607 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000155724.r ENSGT00940000156078.d ENSGT00530000063503.a.b.g.a Otophysi ANCESTRAL SPECIES 16 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT00940000163429.A ENSGT00940000163429.C ENSGT00800000125320 ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000155999.e.b #20 ENSGT00940000159137.b.b #21 ENSGT00940000159727 #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00940000177607 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000154928.c.a.b ENSGT00940000155500.f ENSGT00390000001445 Characiphysae DUPLICATION Characiphysae ANCESTRAL SPECIES 47 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT00940000163429.A ENSGT00940000163429.C ENSGT00800000125320 ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000155999.e.b #20 ENSGT00940000159137.b.b #21 ENSGT00940000159727.a #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00940000177607 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000154928.c.a.b ENSGT00940000155500.f ENSGT00390000001445 Characiphysae_b ANCESTRAL SPECIES 40 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT00940000163429.A ENSGT00940000163429.C ENSGT00800000125320 ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000155999.e.b #20 ENSGT00940000159137.b.b #21 ENSGT00940000159727.a #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00940000177607 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000154928.c.a.b ENSGT00940000155500.f ENSGT00390000001445 Characoidei DUPLICATION Characoidei ANCESTRAL SPECIES 48 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT00940000163429.A ENSGT00940000163429.C ENSGT00800000125320 ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000155999.e.b #20 ENSGT00940000159137.b.b #21 ENSGT00940000159727.a.a #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00940000154550.a ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000154928.c.a.b ENSGT00940000155500.f ENSGT00390000001445 Red-bellied piranha MODERN SPECIES 40 clu (ENSPNAG00000010296) reps1 (ENSPNAG00000010406) ENSPNAG00000010427 papola (ENSPNAG00000010467) ak7a (ENSPNAG00000010484) galca (ENSPNAG00000010560) ipcef1 (ENSPNAG00000010595) cnksr3 (ENSPNAG00000010654) ENSPNAG00000010661 PRKD3 (ENSPNAG00000010771) ndufaf7 (ENSPNAG00000010810) CEBPZOS (ENSPNAG00000001447) cebpz (ENSPNAG00000010829) FOXA2 (ENSPNAG00000010834) #20 PAX1 (ENSPNAG00000010858) #21 ENSPNAG00000010874 #22 nkx2.4b (ENSPNAG00000001469) #23 xrn2 (ENSPNAG00000010956) #24 ENSPNAG00000010977 insm1a (ENSPNAG00000001477) #28 CFAP61 (ENSPNAG00000011009) #29 crnkl1 (ENSPNAG00000001507) #30 naa20 (ENSPNAG00000001513) #31 CD109 (ENSPNAG00000001527) COL12A1 (ENSPNAG00000011368) COX7A2 (ENSPNAG00000001710) tmem30ab (ENSPNAG00000011398) FILIP1 (ENSPNAG00000001732) HMBOX1 (ENSPNAG00000001748) KIF13B (ENSPNAG00000001764) ints9 (ENSPNAG00000011555) Mexicana tetra MODERN SPECIES 18 LGALS8 (ENSAMXG00000018155) zdhhc14 (ENSAMXG00000040079) tmem242 (ENSAMXG00000037333) arid1b (ENSAMXG00000018182) CLDN20 (ENSAMXG00000025078) ENSAMXG00000042058 ipcef1 (ENSAMXG00000031895) cnksr3 (ENSAMXG00000018252) ENSAMXG00000033752 PRKD3 (ENSAMXG00000018256) ndufaf7 (ENSAMXG00000018261) CEBPZOS (ENSAMXG00000039376) cebpz (ENSAMXG00000018270) FOXA2 (ENSAMXG00000039512) #20 PAX1 (ENSAMXG00000018287) #21 NKX2-2 (ENSAMXG00000041974) #22 nkx2.4b (ENSAMXG00000029652) #23 xrn2 (ENSAMXG00000018301) #24 ENSAMXG00000035382 insm1a (ENSAMXG00000037688) #28 CFAP61 (ENSAMXG00000018322) #29 crnkl1 (ENSAMXG00000018334) #30 naa20 (ENSAMXG00000018356) #31 CD109 (ENSAMXG00000018366) COL12A1 (ENSAMXG00000018420) COX7A2 (ENSAMXG00000033504) tmem30ab (ENSAMXG00000018508) FILIP1 (ENSAMXG00000018528) HMBOX1 (ENSAMXG00000018539) KIF13B (ENSAMXG00000018566) ints9 (ENSAMXG00000018614) Characoidei ANCESTRAL SPECIES ENSGT00940000159727.a.b #22 Mexicana tetra MODERN SPECIES 24 ENSAMXG00000038010 slc30a1b (ENSAMXG00000033624) hadhab (ENSAMXG00000016894) ENSAMXG00000033253 TMEM62 (ENSAMXG00000016834) ptgr2 (ENSAMXG00000016801) ENSAMXG00000016770 crip1 (ENSAMXG00000033153) crip2 (ENSAMXG00000032936) MTA1 (ENSAMXG00000002214) tmem229b (ENSAMXG00000041935) zfp36l1a (ENSAMXG00000036093) plekhh1 (ENSAMXG00000002175) slc25a21 (ENSAMXG00000039088) pax9 (ENSAMXG00000031250) ENSAMXG00000002158 #22 nkx2.1 (ENSAMXG00000002155) mbip (ENSAMXG00000002154) RPS6KA5 (ENSAMXG00000002148) ENSAMXG00000002133 ENSAMXG00000033083 sptb (ENSAMXG00000002083) ccdc88c (ENSAMXG00000002066) GPR68 (ENSAMXG00000002063) DGLUCY (ENSAMXG00000002060) slc24a4a (ENSAMXG00000002057) ##33 RALGAPA2 (ENSAMXG00000008520) #27 insm1b (ENSAMXG00000025905) #28 COL12A1 (ENSAMXG00000008403) cox7a2a (ENSAMXG00000040034) tmem30aa (ENSAMXG00000030739) Characiphysae ANCESTRAL SPECIES 4 ENSGT00940000162504 ENSGT01090000260082.d.b.a ENSGT00940000158248.a ENSGT00940000159665 ENSGT00940000161139 ENSGT00940000160410 ENSGT00940000174492 ENSGT00940000167312 ENSGT00940000160421.g.a ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727.b #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000154923.C.w.a ENSGT00940000154550.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00940000159481 ENSGT00530000063596.B ENSGT00940000158846 ENSGT00940000156005 ENSGT00390000014318 ENSGT00940000159112.a ENSGT00390000003316.c.b.b.b Channel catfish MODERN SPECIES 28 NENF (ENSIPUG00000024070) TAGAP (ENSIPUG00000024072) EZR (ENSIPUG00000024076) ENSIPUG00000024081 marc1 (ENSIPUG00000024082) SUSD4 (ENSIPUG00000024087) ENSIPUG00000024093 ENSIPUG00000024095 ENSIPUG00000024096 ENSIPUG00000024097 QPCT (ENSIPUG00000024099) mocs3 (ENSIPUG00000024100) Prkd3 (ENSIPUG00000024334) foxa2 (ENSIPUG00000024358) #20 pax1 (ENSIPUG00000024359) #21 nkx2.2a (ENSIPUG00000024361) #22 nkx2.4a (ENSIPUG00000024362) #23 kiz (ENSIPUG00000024399) #25 ralgapa2 (ENSIPUG00000024401) #27 insm1b (ENSIPUG00000024411) #28 ENSIPUG00000024473 cox7a2a (ENSIPUG00000024479) tmem30aa (ENSIPUG00000000478) FILIP1 (ENSIPUG00000000480) ENSIPUG00000000484 vps39 (ENSIPUG00000000487) galnt16 (ENSIPUG00000000504) numb (ENSIPUG00000000525) exd2 (ENSIPUG00000000560) ENSIPUG00000000575 ENSIPUG00000000584 Characiphysae_b ANCESTRAL SPECIES 13 ENSGT00940000162504 ENSGT01090000260082.d.b.a ENSGT00940000158248.a ENSGT00940000159665 ENSGT00940000161139 ENSGT00940000160410 ENSGT00940000174492 ENSGT00940000167312 ENSGT00940000160421.g.a ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727.b #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000154923.C.w.a ENSGT00940000154550.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00940000159481 ENSGT00530000063596.B ENSGT00940000158846 ENSGT00940000156005 ENSGT00390000014318 ENSGT00940000159112.a ENSGT00390000003316.c.b.b.b Characoidei ANCESTRAL SPECIES 32 ENSGT00940000162504 ENSGT01090000260082.d.b.a ENSGT00940000158248.a ENSGT00940000159665 ENSGT00940000161139 ENSGT00940000160410 ENSGT00940000174492 ENSGT00940000167312 ENSGT00940000160421.g.a ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727.b #22 Red-bellied piranha MODERN SPECIES 192 ezra (ENSPNAG00000016052) ENSPNAG00000016013 ENSPNAG00000015995 HHIPL2 (ENSPNAG00000015969) susd4 (ENSPNAG00000015945) ENSPNAG00000015936 ENSPNAG00000015926 ENSPNAG00000015922 ENSPNAG00000015890 QPCT (ENSPNAG00000015785) mocs3 (ENSPNAG00000015758) ENSPNAG00000015745 PRKD3 (ENSPNAG00000015710) foxa2 (ENSPNAG00000015611) #20 pax1a (ENSPNAG00000015602) #21 nkx2.2a (ENSPNAG00000015582) #22 Electric eel DUPLICATION Electric eel MODERN SPECIES 83 ENSEEEG00000022518 ENSEEEG00000022517 HHIPL2 (ENSEEEG00000022511) susd4 (ENSEEEG00000022508) ENSEEEG00000022507 ENSEEEG00000022506 ENSEEEG00000022502 ENSEEEG00000022499 ENSEEEG00000022497 ENSEEEG00000022494 QPCT (ENSEEEG00000022415) mocs3 (ENSEEEG00000022409) PRKD3 (ENSEEEG00000022404) foxa2 (ENSEEEG00000022403) #20 pax1a (ENSEEEG00000022400) #21 nkx2.2a (ENSEEEG00000022398) #22 nkx2.4a (ENSEEEG00000022397) #23 kiz (ENSEEEG00000022393) #25 RALGAPA2 (ENSEEEG00000022385) #27 insm1b (ENSEEEG00000022379) #28 COL12A1 (ENSEEEG00000022363) ENSEEEG00000022353 cox7a2a (ENSEEEG00000022352) tmem30aa (ENSEEEG00000022350) eprs1 (ENSEEEG00000021877) zgc:174356 (ENSEEEG00000021805) ENSEEEG00000021801 slc24a4a (ENSEEEG00000021797) ##33 DGLUCY (ENSEEEG00000021795) GPR68 (ENSEEEG00000021794) ccdc88c (ENSEEEG00000021790) Electric eel MODERN SPECIES 45 gtf2a1 (ENSEEEG00000010374) ches1 (ENSEEEG00000010370) kcnk13b (ENSEEEG00000010369) psmc1b (ENSEEEG00000010212) calm1b (ENSEEEG00000010205) ENSEEEG00000010203 nfkbiaa (ENSEEEG00000010201) psma6b (ENSEEEG00000010167) zgc:153383 (ENSEEEG00000010163) PRKD3 (ENSEEEG00000009669) ndufaf7 (ENSEEEG00000009632) cebpz (ENSEEEG00000009629) CEBPZOS (ENSEEEG00000009627) FOXA2 (ENSEEEG00000009619) #20 PAX1 (ENSEEEG00000009617) #21 nkx2.2b (ENSEEEG00000009615) #22 nkx2.4b (ENSEEEG00000009613) #23 xrn2 (ENSEEEG00000009608) #24 ENSEEEG00000009604 insm1a (ENSEEEG00000009602) #28 ENSEEEG00000009601 ENSEEEG00000009599 #29 ENSEEEG00000009596 #29 ENSEEEG00000009595 crnkl1 (ENSEEEG00000009593) #30 naa20 (ENSEEEG00000009578) #31 CD109 (ENSEEEG00000009367) COL12A1 (ENSEEEG00000009347) ENSEEEG00000009345 COX7A2 (ENSEEEG00000009342) tmem30ab (ENSEEEG00000009338) Cyprinoidei ANCESTRAL SPECIES 118 ENSGT00940000161252.g ENSGT00950000183142.a.b.a.a ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000154923.C.w.a ENSGT00940000154550.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00530000063596.B ENSGT00940000158846 ENSGT00940000156005 ENSGT00390000014318 ENSGT00940000159112.a ENSGT00950000182995.e.a.a.a ENSGT00390000007900 Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 517 ENSGT00940000159137.b.b.a.b #21 ENSGT00940000159727.d.b.b #22 ENSGT00940000162247.f.c #23 ENSGT00670000098098.f #24 ENSGT00940000162552.a.b.a #28 ENSGT00390000004987.hb #29 ENSGT00550000074931.d #30 ENSGT00550000075046.d #31 ENSGT00940000155926.e.b ENSGT00940000154923.C.w.b.b ENSGT00940000155999.e.a.b #20 ENSGT00940000159137.b.a.h #21 ENSGT00940000159727.c #22 ENSGT00940000162247.e.b #23 ENSGT00390000010121 #25 ENSGT00950000183139.A.gb #27 ENSGT00940000162552.a.a.b #28 ENSGT00940000154923.C.w.a ENSGT00940000154550.a ENSGT00950000182852.A.a.a.a.a ENSGT00940000154928.c.a.b.c Cyprininae_a ANCESTRAL SPECIES 609 ENSGT00940000163429.D.ec.b ENSGT00390000003107.a.i ENSGT00940000160847.b ENSGT00950000183024.a.a.b.q.c ENSGT00940000155999.e.a.b #20 ENSGT00940000159137.b.a.h #21 ENSGT00940000159727.c #22 ENSGT00950000183139.A.fb #27 ENSGT00940000162552.a.a.a #28 Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 644 lims2 (ENSSGRG00000044512) ENSSGRG00000044511 SLC5A7 (ENSSGRG00000044506) ENSSGRG00000044505 ENSSGRG00000044504 il10rb (ENSSGRG00000044503) ENSSGRG00000044484 ENSSGRG00000044483 ENSSGRG00000044370 QPCT (ENSSGRG00000044362) mocs3 (ENSSGRG00000044360) ENSSGRG00000044356 PRKD3 (ENSSGRG00000044228) foxa2 (ENSSGRG00000044212) #20 pax1a (ENSSGRG00000044210) #21 nkx2.2a (ENSSGRG00000044205) #22 nkx2.4a (ENSSGRG00000044202) #23 kiz (ENSSGRG00000044201) #25 insm1b (ENSSGRG00000044173) #28 fgf1b (ENSSGRG00000044172) COL12A1 (ENSSGRG00000043861) cox7a2a (ENSSGRG00000043828) tmem30aa (ENSSGRG00000043799) FILIP1 (ENSSGRG00000043797) vps39 (ENSSGRG00000042843) GALNT16 (ENSSGRG00000042833) exd2 (ENSSGRG00000042749) odc1 (ENSSGRG00000042693) nol10 (ENSSGRG00000042594) ATP6V1C2 (ENSSGRG00000042560) CCR6 (ENSSGRG00000042559) Golden-line barbel MODERN SPECIES 640 ENSSGRG00000032697 ENSSGRG00000032693 ENSSGRG00000032648 QPCT (ENSSGRG00000032525) mocs3 (ENSSGRG00000032455) PRKD3 (ENSSGRG00000031227) foxa2 (ENSSGRG00000031188) #20 pax1a (ENSSGRG00000031185) #21 nkx2.2a (ENSSGRG00000031184) #22 ENSSGRG00000031183 nkx2.4a (ENSSGRG00000031182) #23 Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 722 ENSGT00940000161252.g.e ENSGT00950000183142.a.b.a.a ENSGT00940000157012.k.a ENSGT00530000063946.b.k ENSGT00940000163429.D.ec.a ENSGT00390000003107.a.j ENSGT00940000160847 ENSGT00950000183024.a.a.b.q.d ENSGT00940000155999.e.a.a.b #20 ENSGT00940000159137.b.a.g.b #21 ENSGT00940000159727.d.a.a #22 Cyprininae_a ANCESTRAL SPECIES 675 ENSGT00940000163429.D.ec.a ENSGT00390000003107.a.j ENSGT00940000160847.a ENSGT00950000183024.a.a.b.q.d ENSGT00940000155999.e.a.a.b #20 ENSGT00940000159137.b.a.g.b #21 ENSGT00940000159727.d.a.a #22 Common carp reference MODERN SPECIES 30 ENSCCRG00000063969 ENSCCRG00000030444 mthfd1b (ENSCCRG00000011812) ENSCCRG00000065136 orc3 (ENSCCRG00000044396) CLDN20 (ENSCCRG00000069167) tfb1m (ENSCCRG00000060303) TIAM2 (ENSCCRG00000015366) SCAF8 (ENSCCRG00000054193) ENSCCRG00000039812 ENSCCRG00000049640 mocs3 (ENSCCRG00000049653) ENSCCRG00000016065 foxa2 (ENSCCRG00000016510) #20 pax1a (ENSCCRG00000069776) #21 nkx2.2a (ENSCCRG00000006430) #22 ENSCCRG00000008784 nkx2.4a (ENSCCRG00000043198) #23 kiz (ENSCCRG00000046144) #25 RALGAPA2 (ENSCCRG00000073809) #27 insm1b (ENSCCRG00000076784) #28 ENSCCRG00000073203 cox7a2a (ENSCCRG00000048808) tmem30aa (ENSCCRG00000059012) ENSCCRG00000033917 FILIP1 (ENSCCRG00000081222) ENSCCRG00000074155 ENSCCRG00000010544 ENSCCRG00000010647 numb (ENSCCRG00000045520) exd2 (ENSCCRG00000045404) Goldfish MODERN SPECIES 8 znf292a (ENSCARG00000020099) mthfd1b (ENSCARG00000020207) gnmt (ENSCARG00000022349) ENSCARG00000022356 ENSCARG00000022382 ENSCARG00000022385 ENSCARG00000036465 ENSCARG00000036509 ENSCARG00000036535 ENSCARG00000036887 QPCT (ENSCARG00000036920) mocs3 (ENSCARG00000037334) PRKD3 (ENSCARG00000037910) foxa2 (ENSCARG00000038159) #20 pax1a (ENSCARG00000038198) #21 nkx2.2a (ENSCARG00000038237) #22 nkx2.4a (ENSCARG00000038253) #23 kiz (ENSCARG00000038276) #25 ENSCARG00000038359 ENSCARG00000038391 ENSCARG00000038427 ENSCARG00000038433 ENSCARG00000038450 ENSCARG00000038461 smoc1 (ENSCARG00000038531) ENSCARG00000038590 PLEKHD1 (ENSCARG00000038599) slc39a9 (ENSCARG00000038619) ENSCARG00000038673 ENSCARG00000038708 ENSCARG00000038727 Cyprininae ANCESTRAL SPECIES 457 ENSGT00940000163429.D.ec.b ENSGT00390000003107.a.i ENSGT00950000183024.a.a.b.q.c ENSGT00940000155999.e.a.a.a #20 ENSGT00940000159137.b.a.g.a #21 ENSGT00940000159727.d.a.b #22 ENSGT00940000162247.e.a #23 ENSGT00950000183139.A.fb #27 ENSGT00940000162552.a.a.a #28 ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00530000063596.B ENSGT00940000158846.a.b ENSGT00940000156005 ENSGT00390000014318 ENSGT00940000159112.a.b ENSGT00950000182995.e.a.a.a ENSGT00390000007900 ENSGT00390000004263.b ENSGT01030000234667.b.f.b ENSGT00940000164908.l Cyprininae_a ANCESTRAL SPECIES 472 ENSGT00940000155999.e.a.a.a #20 ENSGT00940000159137.b.a.g.a #21 ENSGT00940000159727.d.a.b #22 ENSGT00940000162247.e.b #23 ENSGT00390000010121 #25 ENSGT00950000183139.A.gb #27 ENSGT00940000162552.a.a.b #28 ENSGT00940000154923.C.w.a.c ENSGT00940000154550.a ENSGT00390000004660.C.a.a.c.a ENSGT00950000182852.A.a.a.b.a ENSGT00530000063596.B.h ENSGT00940000158846.a.a ENSGT00940000156005 ENSGT00390000014318 ENSGT00940000159112.a.b ENSGT00950000182995.e.a.a.a.ub Common carp reference MODERN SPECIES 4 orc3 (ENSCCRG00000079791) ENSCCRG00000062175 znf292a (ENSCCRG00000058528) ENSCCRG00000075260 ENSCCRG00000050780 ENSCCRG00000034908 ENSCCRG00000081252 ENSCCRG00000074720 ENSCCRG00000066194 ENSCCRG00000029842 ENSCCRG00000029854 mocs3 (ENSCCRG00000072974) ENSCCRG00000068392 foxa2 (ENSCCRG00000065801) #20 pax1a (ENSCCRG00000005066) #21 nkx2.2a (ENSCCRG00000005090) #22 nkx2.4a (ENSCCRG00000057340) #23 kiz (ENSCCRG00000023119) #25 ENSCCRG00000062269 RALGAPA2 (ENSCCRG00000035865) #27 ENSCCRG00000032582 insm1b (ENSCCRG00000074658) #28 ENSCCRG00000044163 ENSCCRG00000067318 tmem30aa (ENSCCRG00000048792) ENSCCRG00000044009 ENSCCRG00000048236 ENSCCRG00000026647 numb (ENSCCRG00000026917) exd2 (ENSCCRG00000026930) ENSCCRG00000060770 Goldfish MODERN SPECIES 36 ENSCARG00000018505 ENSCARG00000018503 atxn3 (ENSCARG00000018176) GABRR1 (ENSCARG00000017769) fam98b (ENSCARG00000017727) spred1 (ENSCARG00000069750) ENSCARG00000069739 ENSCARG00000069734 ENSCARG00000069731 ENSCARG00000069692 QPCT (ENSCARG00000069667) PRKD3 (ENSCARG00000069629) foxa2 (ENSCARG00000069615) #20 pax1a (ENSCARG00000069613) #21 ENSCARG00000069609 nkx2.2a (ENSCARG00000069607) #22 nkx2.4a (ENSCARG00000069602) #23 RALGAPA2 (ENSCARG00000068756) #27 insm1b (ENSCARG00000068497) #28 ENSCARG00000068493 COL12A1 (ENSCARG00000066720) cox7a2a (ENSCARG00000066553) vps39 (ENSCARG00000065922) GALNT16 (ENSCARG00000065689) numb (ENSCARG00000065600) ENSCARG00000065593 ENSCARG00000065589 odc1 (ENSCARG00000065504) nol10 (ENSCARG00000064572) ATP6V1C2 (ENSCARG00000064485) CCR6 (ENSCARG00000064481) Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 766 ENSGT00940000159137.b.b.a.a #21 ENSGT00940000159727.d.b.a #22 ENSGT00940000162247.f.d #23 ENSGT00670000098098.e #24 ENSGT00940000162552.a.b.b #28 ENSGT00390000004987.ib #29 ENSGT00550000074931.c #30 ENSGT00550000075046.c #31 ENSGT00940000155926.e.a ENSGT00940000154923.C.w.b.a Goldfish MODERN SPECIES 2903 ENSCARG00000045617 ENSCARG00000045627 IPO13 (ENSCARG00000045745) PAX1 (ENSCARG00000048527) #21 nkx2.2b (ENSCARG00000048534) #22 nkx2.4b (ENSCARG00000048559) #23 xrn2 (ENSCARG00000048640) #24 insm1a (ENSCARG00000048872) #28 crnkl1 (ENSCARG00000048899) #30 naa20 (ENSCARG00000048960) #31 ENSCARG00000048986 COL12A1 (ENSCARG00000049227) FILIP1 (ENSCARG00000052673) Cyprininae_a ANCESTRAL SPECIES 289 ENSGT00940000159137.b.b.a.a #21 ENSGT00940000159727.d.b.a #22 ENSGT00940000162247.f.d #23 ENSGT00670000098098.e #24 ENSGT00940000162552.a.b.b #28 ENSGT00390000004987.ib #29 ENSGT00550000074931.c #30 ENSGT00550000075046.c #31 ENSGT00940000155926.e.a ENSGT00940000154923.C.w.b.a ENSGT00950000182852.A.a.a.a.b ENSGT00940000154928.c.a.b.d ENSGT00940000155500.f.a ENSGT00940000156692.d ENSGT00390000000083.a.d ENSGT00390000005052.z.b ENSGT00390000005052.z.a.a.a Common carp reference MODERN SPECIES 28 RAB10 (ENSCCRG00000082614) lin28b (ENSCCRG00000063422) tfap2b (ENSCCRG00000078327) tfap2d (ENSCCRG00000025627) hadhb (ENSCCRG00000010774) hadhaa (ENSCCRG00000074806) GAREM2 (ENSCCRG00000010843) ENSCCRG00000010851 prep (ENSCCRG00000010847) tram2 (ENSCCRG00000028190) efhc1 (ENSCCRG00000028193) ENSCCRG00000065663 ENSCCRG00000008668 ENSCCRG00000041541 PAX1 (ENSCCRG00000041349) #21 nkx2.2b (ENSCCRG00000041579) #22 nkx2.4b (ENSCCRG00000041582) #23 xrn2 (ENSCCRG00000041635) #24 INSM1 (ENSCCRG00000066351) #28 ENSCCRG00000048370 #29 crnkl1 (ENSCCRG00000066493) #30 NAA20 (ENSCCRG00000042226) #31 ENSCCRG00000042213 ENSCCRG00000011536 ENSCCRG00000043874 ENSCCRG00000069819 ENSCCRG00000013219 extl3 (ENSCCRG00000011174) riox1 (ENSCCRG00000025298) NDUFB1 (ENSCCRG00000025303) cpsf2 (ENSCCRG00000010971) Golden-line barbel MODERN SPECIES 672 PAX1 (ENSSGRG00000001737) #21 nkx2.2b (ENSSGRG00000001735) #22 ENSSGRG00000001734 #23 xrn2 (ENSSGRG00000000445) #24 insm1a (ENSSGRG00000000259) #28 CFAP61 (ENSSGRG00000000226) #29 crnkl1 (ENSSGRG00000000168) #30 naa20 (ENSSGRG00000000132) #31 COL12A1 (ENSSGRG00000049441) ENSSGRG00000049417 FILIP1 (ENSSGRG00000049414) HMBOX1 (ENSSGRG00000049412) ENSSGRG00000049236 extl3 (ENSSGRG00000049230) NDUFB1 (ENSSGRG00000049227) cpsf2 (ENSSGRG00000049194) SLC24A4 (ENSSGRG00000049181) ##33 Cyprininae ANCESTRAL SPECIES 517 ENSGT00940000159137.b.b.a.b #21 ENSGT00940000159727.d.b.b #22 ENSGT00940000162247.f.c #23 ENSGT00670000098098.f #24 ENSGT00940000162552.a.b.a #28 ENSGT00390000004987.hb #29 ENSGT00550000074931.d #30 ENSGT00550000075046.d #31 ENSGT00940000155926.e.b ENSGT00940000154923.C.w.b.b ENSGT00940000155999.e.a.b #20 ENSGT00940000159137.b.a.h #21 ENSGT00940000159727.c #22 ENSGT00940000162247.e.b #23 ENSGT00390000010121 #25 ENSGT00950000183139.A.gb #27 ENSGT00940000162552.a.a.b #28 Goldfish MODERN SPECIES 12 ENSCARG00000055411 ENSCARG00000055396 ENSCARG00000055381 hadhb (ENSCARG00000054721) GAREM2 (ENSCARG00000054643) prep (ENSCARG00000054065) ENSCARG00000054024 xkr5a (ENSCARG00000053972) tram2 (ENSCARG00000053905) ENSCARG00000053889 IPO13 (ENSCARG00000053028) ENSCARG00000052887 ENSCARG00000052859 mgst3a (ENSCARG00000052832) PAX1 (ENSCARG00000052815) #21 nkx2.2b (ENSCARG00000052799) #22 nkx2.4b (ENSCARG00000052776) #23 xrn2 (ENSCARG00000052557) #24 insm1a (ENSCARG00000052514) #28 CFAP61 (ENSCARG00000052400) #29 crnkl1 (ENSCARG00000052349) #30 naa20 (ENSCARG00000052297) #31 CD109 (ENSCARG00000052265) COL12A1 (ENSCARG00000048966) COX7A2 (ENSCARG00000048474) FILIP1 (ENSCARG00000048454) HMBOX1 (ENSCARG00000048281) ENSCARG00000048254 ints9 (ENSCARG00000048211) extl3 (ENSCARG00000048142) riox1 (ENSCARG00000047018) Cyprininae_a ANCESTRAL SPECIES 142 ENSGT00940000159137.b.b.a.b #21 ENSGT00940000159727.d.b.b #22 ENSGT00940000162247.f.c #23 ENSGT00670000098098.f #24 ENSGT00940000162552.a.b.a #28 ENSGT00390000004987.hb #29 ENSGT00550000074931.d #30 ENSGT00550000075046.d #31 ENSGT00940000155926.e.b ENSGT00940000154923.C.w.b.b ENSGT00950000182852.A.a.a.a.a ENSGT00940000154928.c.a.b.c ENSGT00940000155500.f.b ENSGT00390000001445 ENSGT00940000156692.c ENSGT00390000000083.a.c ENSGT00390000005052.y Common carp reference MODERN SPECIES 34 rab10 (ENSCCRG00000043765) tfap2b (ENSCCRG00000003128) tfap2d (ENSCCRG00000003096) hadhb (ENSCCRG00000055821) hadhaa (ENSCCRG00000010021) GAREM2 (ENSCCRG00000010023) ENSCCRG00000023759 prep (ENSCCRG00000010038) xkr5a (ENSCCRG00000010765) tram2 (ENSCCRG00000004112) ENSCCRG00000076012 ENSCCRG00000028238 ENSCCRG00000077241 ENSCCRG00000034744 PAX1 (ENSCCRG00000034722) #21 nkx2.2b (ENSCCRG00000012145) #22 nkx2.4b (ENSCCRG00000012144) #23 xrn2 (ENSCCRG00000005388) #24 INSM1 (ENSCCRG00000053371) #28 CFAP61 (ENSCCRG00000005348) #29 crnkl1 (ENSCCRG00000073378) #30 NAA20 (ENSCCRG00000005306) #31 ENSCCRG00000064298 ENSCCRG00000011873 COX7A2 (ENSCCRG00000043892) ENSCCRG00000011785 ENSCCRG00000049434 ENSCCRG00000005045 ints9 (ENSCCRG00000016840) extl3 (ENSCCRG00000010928) riox1 (ENSCCRG00000011157) Golden-line barbel MODERN SPECIES 346 GNPAT (ENSSGRG00000027587) ENSSGRG00000027588 TRIM67 (ENSSGRG00000027590) exoc8 (ENSSGRG00000027591) sprtn (ENSSGRG00000027592) FAM89A (ENSSGRG00000027593) arv1 (ENSSGRG00000027594) ttc13 (ENSSGRG00000027598) ENSSGRG00000027786 si:ch73-111k22.2 (ENSSGRG00000027790) ENSSGRG00000027792 PAX1 (ENSSGRG00000027793) #21 nkx2.2b (ENSSGRG00000027794) #22 nkx2.4b (ENSSGRG00000027795) #23 xrn2 (ENSSGRG00000027818) #24 insm1a (ENSSGRG00000028455) #28 CFAP61 (ENSSGRG00000028457) #29 crnkl1 (ENSSGRG00000028462) #30 naa20 (ENSSGRG00000028467) #31 COL12A1 (ENSSGRG00000028627) ENSSGRG00000028730 FILIP1 (ENSSGRG00000028731) HMBOX1 (ENSSGRG00000028738) ENSSGRG00000028787 ints9 (ENSSGRG00000030370) extl3 (ENSSGRG00000030387) cpsf2 (ENSSGRG00000030388) NDUFB1 (ENSSGRG00000030412) Zebrafish DUPLICATION Zebrafish MODERN SPECIES 8 plk4 (ENSDARG00000004576) ITPK1 (ENSDARG00000070583) EML5 (ENSDARG00000053517) isca2 (ENSDARG00000038154) npc2.1 (ENSDARG00000090912) npc2.2 (ENSDARG00000096979) gskip (ENSDARG00000038099) ENSDARG00000097650 amy2al2 (ENSDARG00000009443) QPCT (ENSDARG00000089717) mocs3 (ENSDARG00000008239) PRKD3 (ENSDARG00000079967) foxa2 (ENSDARG00000003411) #20 ENSDARG00000116402 pax1a (ENSDARG00000008203) #21 nkx2.2a (ENSDARG00000053298) #22 nkx2.4a (ENSDARG00000075107) #23 kiz (ENSDARG00000079753) #25 RALGAPA2 (ENSDARG00000005861) #27 insm1b (ENSDARG00000053301) #28 mocs1 (ENSDARG00000078479) fosl2 (ENSDARG00000040623) babam2 (ENSDARG00000038863) rbks (ENSDARG00000019877) mrpl33 (ENSDARG00000104031) ENSDARG00000089862 ENSDARG00000034160 supt7l (ENSDARG00000013461) LRFN2 (ENSDARG00000106248) ENSDARG00000086849 ENSDARG00000013134 Zebrafish MODERN SPECIES 12 GAREM2 (ENSDARG00000073933) prep (ENSDARG00000057151) efhc1 (ENSDARG00000009743) xkr5a (ENSDARG00000103017) tram2 (ENSDARG00000030092) ENSDARG00000067927 IPO13 (ENSDARG00000060618) ENSDARG00000099804 ENSDARG00000100162 insm1a (ENSDARG00000091756) #28 ENSDARG00000079997 #29 ENSDARG00000106343 mgst3a (ENSDARG00000102744) PAX1 (ENSDARG00000073814) #21 gfus.3 (ENSDARG00000042661) nkx2.2b (ENSDARG00000101549) #22 nkx2.4b (ENSDARG00000104107) #23 xrn2 (ENSDARG00000101900) #24 crnkl1 (ENSDARG00000007901) #30 naa20 (ENSDARG00000039493) #31 CD109 (ENSDARG00000060609) ENSDARG00000102208 ENSDARG00000115208 COL12A1 (ENSDARG00000019601) COX7A2 (ENSDARG00000110700) FILIP1 (ENSDARG00000079634) HMBOX1 (ENSDARG00000109287) KIF13B (ENSDARG00000073859) ints9 (ENSDARG00000067913) extl3 (ENSDARG00000026811) riox1 (ENSDARG00000067838) Clupeiformes DUPLICATION Clupeiformes ANCESTRAL SPECIES ENSGT00940000159727.g #22 Atlantic herring MODERN SPECIES 5 crls1 (ENSCHAG00000006063) MCM8 (ENSCHAG00000006113) napba (ENSCHAG00000007603) #14 ENSCHAG00000007949 KLHL29 (ENSCHAG00000007973) cdc5l (ENSCHAG00000008024) supt3h (ENSCHAG00000008121) runx2a (ENSCHAG00000008263) clic5a (ENSCHAG00000008517) tfb1m (ENSCHAG00000008629) CLDN20 (ENSCHAG00000008645) TIAM2 (ENSCHAG00000008655) ENSCHAG00000008752 PRKD3 (ENSCHAG00000008830) pax1a (ENSCHAG00000012504) #21 nkx2.2a (ENSCHAG00000012578) #22 ENSCHAG00000012614 nkx2.4a (ENSCHAG00000012635) #23 kiz (ENSCHAG00000012668) #25 RALGAPA2 (ENSCHAG00000012862) #27 insm1b (ENSCHAG00000017345) #28 COL12A1 (ENSCHAG00000017415) COX7A2 (ENSCHAG00000020774) tmem30aa (ENSCHAG00000020873) ENSCHAG00000020883 ENSCHAG00000020906 prox2 (ENSCHAG00000020915) esrrb (ENSCHAG00000020955) ENSCHAG00000021097 ENSCHAG00000021116 tgfb3 (ENSCHAG00000021621) Clupeiformes DUPLICATION Clupeiformes ANCESTRAL SPECIES 125 ENSGT00390000013305.a.a ENSGT00940000155727.o.b ENSGT00940000156483.h.b.c ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT00940000163429.B ENSGT00800000125320 ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000155999.e.b #20 ENSGT00940000159137.b.b #21 ENSGT00940000159727.h.a #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00940000154550.a ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000155724.r ENSGT00940000156078.d ENSGT00530000063503.a.b.g.a Atlantic herring MODERN SPECIES 6 ENSCHAG00000010638 rrm2 (ENSCHAG00000010654) ENSCHAG00000010944 LGALS8 (ENSCHAG00000011017) zdhhc14 (ENSCHAG00000011024) tmem242 (ENSCHAG00000011078) arid1b (ENSCHAG00000011086) ENSCHAG00000011131 CLDN20 (ENSCHAG00000011145) TIAM2 (ENSCHAG00000011173) ENSCHAG00000011422 cnksr3 (ENSCHAG00000011432) ENSCHAG00000011517 FOXA2 (ENSCHAG00000012210) #20 PAX1 (ENSCHAG00000012216) #21 nkx2.2b (ENSCHAG00000012230) #22 nkx2.4b (ENSCHAG00000012238) #23 xrn2 (ENSCHAG00000012251) #24 ENSCHAG00000012454 insm1a (ENSCHAG00000012459) #28 CFAP61 (ENSCHAG00000012466) #29 crnkl1 (ENSCHAG00000012480) #30 naa20 (ENSCHAG00000012539) #31 CD109 (ENSCHAG00000012626) COL12A1 (ENSCHAG00000013541) COX7A2 (ENSCHAG00000016006) tmem30ab (ENSCHAG00000016020) FILIP1 (ENSCHAG00000016062) SENP6 (ENSCHAG00000016080) myo6a (ENSCHAG00000016112) IMPG1 (ENSCHAG00000016231) Denticle herring MODERN SPECIES 5 arid1b (ENSDCDG00000029643) CLDN20 (ENSDCDG00000029751) TIAM2 (ENSDCDG00000029760) ENSDCDG00000029817 ENSDCDG00000029829 ENSDCDG00000029944 ENSDCDG00000029946 ENSDCDG00000029948 ENSDCDG00000003178 PRKD3 (ENSDCDG00000003326) ndufaf7 (ENSDCDG00000004083) cebpz (ENSDCDG00000004236) CEBPZOS (ENSDCDG00000004271) FOXA2 (ENSDCDG00000004272) #20 PAX1 (ENSDCDG00000004276) #21 nkx2.2b (ENSDCDG00000004279) #22 xrn2 (ENSDCDG00000004296) #24 ENSDCDG00000004325 insm1a (ENSDCDG00000004327) #28 CFAP61 (ENSDCDG00000004335) #29 crnkl1 (ENSDCDG00000004346) #30 naa20 (ENSDCDG00000004354) #31 CD109 (ENSDCDG00000004366) COL12A1 (ENSDCDG00000004422) COX7A2 (ENSDCDG00000004956) tmem30ab (ENSDCDG00000004958) FILIP1 (ENSDCDG00000004960) SENP6 (ENSDCDG00000004962) myo6a (ENSDCDG00000004969) ENSDCDG00000004977 HTR1B (ENSDCDG00000004982) Clupeiformes ANCESTRAL SPECIES 61 ENSGT00550000074922 ENSGT00390000010738 ENSGT00940000160171 ENSGT00940000156406.a ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727.h.b #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00390000008195 ENSGT00390000002448 ENSGT00730000111137 ENSGT00940000155671.y.a ENSGT00940000157666 ENSGT01030000234667.b.f.b ENSGT00940000155646.m ENSGT00390000004263.b Denticle herring MODERN SPECIES supt3h (ENSDCDG00000026135) runx2a (ENSDCDG00000026250) clic5a (ENSDCDG00000026267) tfb1m (ENSDCDG00000026272) CLDN20 (ENSDCDG00000026275) TIAM2 (ENSDCDG00000026288) SCAF8 (ENSDCDG00000026321) ENSDCDG00000026327 ENSDCDG00000026332 ENSDCDG00000026334 QPCT (ENSDCDG00000026358) mocs3 (ENSDCDG00000026457) PRKD3 (ENSDCDG00000026573) foxa2 (ENSDCDG00000026715) #20 pax1a (ENSDCDG00000026722) #21 NKX2-2 (ENSDCDG00000026732) #22 NKX2-4 (ENSDCDG00000026738) #23 kiz (ENSDCDG00000026740) #25 RALGAPA2 (ENSDCDG00000026761) #27 insm1b (ENSDCDG00000027059) #28 ENSDCDG00000027062 ENSDCDG00000027063 COL12A1 (ENSDCDG00000027079) cox7a2a (ENSDCDG00000027224) tmem30aa (ENSDCDG00000013811) ENSDCDG00000013814 FILIP1 (ENSDCDG00000013816) adi1 (ENSDCDG00000013818) trappc12 (ENSDCDG00000013886) eipr1 (ENSDCDG00000015201) MYT1L (ENSDCDG00000015329) Euteleosteomorpha ANCESTRAL SPECIES 34 ENSGT00940000161983.a ENSGT00940000155727.o.a ENSGT01030000235099 ENSGT00940000156483.h.a ENSGT00940000155634.q.a ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000165717 ENSGT00940000154788 Protacanthopterygii ANCESTRAL SPECIES 35 ENSGT00940000168209 ENSGT00940000155727.o.a ENSGT01030000235099 ENSGT00940000156483.h.a ENSGT00940000155634.q.a ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000165717 ENSGT00940000154788 ENSGT00940000177851 ENSGT00940000158790 ENSGT00390000004700.a.g Northern pike DUPLICATION Northern pike MODERN SPECIES 14 KBTBD11 (ENSELUG00000002661) ENSELUG00000002669 LGALS8 (ENSELUG00000002683) ZDHHC14 (ENSELUG00000002699) ARID1B (ENSELUG00000002729) tfb1m (ENSELUG00000002752) CLDN20 (ENSELUG00000002744) TIAM2 (ENSELUG00000002765) ENSELUG00000002779 ENSELUG00000000075 QPCT (ENSELUG00000000080) mocs3 (ENSELUG00000002857) ENSELUG00000002900 foxa2 (ENSELUG00000002913) #20 pax1a (ENSELUG00000002926) #21 nkx2.2a (ENSELUG00000002941) #22 nkx2.4a (ENSELUG00000002954) #23 kiz (ENSELUG00000002980) #25 RALGAPA2 (ENSELUG00000003028) #27 insm1b (ENSELUG00000003048) #28 ENSELUG00000003056 gale (ENSELUG00000003083) zbtb8a (ENSELUG00000003106) hmgcl (ENSELUG00000003119) gjb3 (ENSELUG00000003125) gjb10 (ENSELUG00000003140) ppie (ENSELUG00000003162) pabpc4 (ENSELUG00000003195) tmem54a (ENSELUG00000003212) hdac1 (ENSELUG00000003247) lck (ENSELUG00000003292) Northern pike MODERN SPECIES 17 rrm2 (ENSELUG00000014215) LGALS8 (ENSELUG00000001398) zdhhc14 (ENSELUG00000014314) tmem242 (ENSELUG00000034510) arid1b (ENSELUG00000014567) CLDN20 (ENSELUG00000014633) TIAM2 (ENSELUG00000014740) ENSELUG00000014809 cnksr3 (ENSELUG00000014923) ENSELUG00000014946 PRKD3 (ENSELUG00000014993) ndufaf7 (ENSELUG00000015064) cebpz (ENSELUG00000015123) FOXA2 (ENSELUG00000015136) #20 PAX1 (ENSELUG00000000549) #21 nkx2.2b (ENSELUG00000015194) #22 nkx2.4b (ENSELUG00000015208) #23 xrn2 (ENSELUG00000000552) #24 ENSELUG00000015309 insm1a (ENSELUG00000001086) #28 CFAP61 (ENSELUG00000015346) #29 crnkl1 (ENSELUG00000015424) #30 naa20 (ENSELUG00000015394) #31 COL12A1 (ENSELUG00000015523) COX7A2 (ENSELUG00000015788) tmem30ab (ENSELUG00000015863) FILIP1 (ENSELUG00000015895) SENP6 (ENSELUG00000015978) ENSELUG00000016055 ENSELUG00000016146 HTR1B (ENSELUG00000016168) Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 152 ENSGT00940000155982.e.b.g ENSGT00390000013305.a.a.d ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.w.a ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b ENSGT00950000183024.a.a.b.r.b ENSGT00390000001588.p ENSGT00390000006395.j.b ENSGT00940000155999.e.b.b #20 ENSGT00940000159137.b.b.c #21 ENSGT00940000159727.k.a #22 ENSGT00940000162247.f.f #23 ENSGT00670000098098.g #24 ENSGT00400000024959 ENSGT00940000162552.a.b.c #28 ENSGT00390000004987.kb #29 ENSGT00940000177607 ENSGT00550000074931.e #30 ENSGT00550000075046.h #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b.c ENSGT00940000154550.a.wb ENSGT00390000004660.C.a.a.d.b ENSGT00950000182852.A.a.a.a.e ENSGT00940000178265 ENSGT00940000155724.r.i Salmoninae_a ANCESTRAL SPECIES 23 ENSGT00940000157612.b.a ENSGT00940000155982.e.b.g ENSGT00390000013305.a.a.d ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b ENSGT00950000183024.a.a.b.r.b ENSGT00390000001588.p ENSGT00390000006395.j.b ENSGT00940000155999.e.b.b #20 ENSGT00940000159137.b.b.c #21 ENSGT00940000159727.k.a #22 ENSGT00940000162247.f.f #23 ENSGT00670000098098.g #24 ENSGT00400000024959 ENSGT00940000162552.a.b.c #28 ENSGT00390000004987.kb #29 ENSGT00940000177607 ENSGT00550000074931.e #30 ENSGT00550000075046.h #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b.c ENSGT00940000154550.a.wb ENSGT00390000004660.C.a.a.d.b ENSGT00950000182852.A.a.a.a.e ENSGT00940000178265 ENSGT00940000155724.r.i Oncorhynchus ANCESTRAL SPECIES 25 ENSGT00940000157612.b.a ENSGT00940000155982.e.b.g ENSGT00390000013305.a.a.d ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b ENSGT00950000183024.a.a.b.r.b ENSGT00390000001588.p ENSGT00390000006395.j.b ENSGT00940000155999.e.b.b #20 ENSGT00940000159137.b.b.c #21 ENSGT00940000159727.k.a #22 ENSGT00940000162247.f.f #23 ENSGT00670000098098.g #24 ENSGT00400000024959 ENSGT00940000162552.a.b.c #28 ENSGT00390000004987.kb #29 ENSGT00550000074931.e #30 ENSGT00550000075046.h #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b.c ENSGT00940000154550.a.wb ENSGT00390000004660.C.a.a.d.b ENSGT00950000182852.A.a.a.a.e ENSGT00940000155724.r.i ENSGT00940000156078.d.c ENSGT00530000063503.a.b.g.a.c Oncorhynchus_a ANCESTRAL SPECIES 17 ENSGT00940000157612.b.a ENSGT00940000155982.e.b.g ENSGT00390000013305.a.a.d ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b ENSGT00950000183024.a.a.b.r.b ENSGT00390000001588.p ENSGT00390000006395.j.b ENSGT00940000155999.e.b.b #20 ENSGT00940000159137.b.b.c #21 ENSGT00940000159727.k.a #22 ENSGT00940000162247.f.f #23 ENSGT00670000098098.g #24 ENSGT00400000024959 ENSGT00940000162552.a.b.c #28 ENSGT00390000004987.kb #29 ENSGT00550000074931.e #30 ENSGT00550000075046.h #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b.c ENSGT00940000154550.a.wb ENSGT00390000004660.C.a.a.d.b ENSGT00950000182852.A.a.a.a.e ENSGT00940000155724.r.i ENSGT00940000156078.d.c ENSGT00530000063503.a.b.g.a.c Coho salmon MODERN SPECIES 13 ENSOKIG00005036784 taf1b (ENSOKIG00005036800) klf11a (ENSOKIG00005036821) RRM2 (ENSOKIG00005036867) LGALS8 (ENSOKIG00005037486) zdhhc14 (ENSOKIG00005037548) tmem242 (ENSOKIG00005037575) arid1b (ENSOKIG00005037606) CLDN20 (ENSOKIG00005037936) TIAM2 (ENSOKIG00005037962) ENSOKIG00005038262 ENSOKIG00005038496 CEBPZ (ENSOKIG00005041953) FOXA2 (ENSOKIG00005042182) #20 PAX1 (ENSOKIG00005042225) #21 nkx2.2b (ENSOKIG00005042283) #22 nkx2.4b (ENSOKIG00005042296) #23 xrn2 (ENSOKIG00005042333) #24 ENSOKIG00005042487 INSM1 (ENSOKIG00005042493) #28 ENSOKIG00005042500 #29 ENSOKIG00005042540 ENSOKIG00005042544 crnkl1 (ENSOKIG00005042567) #30 naa20 (ENSOKIG00005043041) #31 CD109 (ENSOKIG00005043093) COL12A1 (ENSOKIG00005043212) COX7A2 (ENSOKIG00005044237) TMEM30A (ENSOKIG00005044249) FILIP1 (ENSOKIG00005044317) SENP6 (ENSOKIG00005044928) Chinook salmon MODERN SPECIES 9 klf11a (ENSOTSG00005015420) RRM2 (ENSOTSG00005015421) LGALS8 (ENSOTSG00005016467) zdhhc14 (ENSOTSG00005016470) tmem242 (ENSOTSG00005016471) arid1b (ENSOTSG00005016477) ENSOTSG00005016480 CLDN20 (ENSOTSG00005016482) ENSOTSG00005016486 cnksr3 (ENSOTSG00005016520) PRKD3 (ENSOTSG00005016531) ndufaf7 (ENSOTSG00005016902) cebpz (ENSOTSG00005016904) FOXA2 (ENSOTSG00005016930) #20 PAX1 (ENSOTSG00005016931) #21 nkx2.2b (ENSOTSG00005016932) #22 nkx2.4b (ENSOTSG00005016933) #23 xrn2 (ENSOTSG00005016934) #24 ENSOTSG00005020267 insm1a (ENSOTSG00005020268) #28 CFAP61 (ENSOTSG00005020273) #29 crnkl1 (ENSOTSG00005020282) #30 naa20 (ENSOTSG00005020290) #31 COL12A1 (ENSOTSG00005020304) COX7A2 (ENSOTSG00005020377) tmem30ab (ENSOTSG00005020382) FILIP1 (ENSOTSG00005020383) SENP6 (ENSOTSG00005020386) myo6a (ENSOTSG00005020408) ENSOTSG00005021736 HTR1B (ENSOTSG00005021737) Rainbow trout MODERN SPECIES 25 RRM2 (ENSOMYG00000009693) ENSOMYG00000010358 zdhhc14 (ENSOMYG00000010383) ENSOMYG00000070397 tmem242 (ENSOMYG00000010405) arid1b (ENSOMYG00000010596) CLDN20 (ENSOMYG00000010979) TIAM2 (ENSOMYG00000010992) ENSOMYG00000063404 ENSOMYG00000011010 PRKD3 (ENSOMYG00000011066) ENSOMYG00000011120 CEBPZ (ENSOMYG00000011164) FOXA2 (ENSOMYG00000011219) #20 PAX1 (ENSOMYG00000011229) #21 nkx2.2b (ENSOMYG00000011245) #22 nkx2.1c (ENSOMYG00000058417) #23 xrn2 (ENSOMYG00000011437) #24 ENSOMYG00000074024 ENSOMYG00000056393 ENSOMYG00000010658 crnkl1 (ENSOMYG00000013953) #30 naa20 (ENSOMYG00000013992) #31 CD109 (ENSOMYG00000049290) ENSOMYG00000059119 COL12A1 (ENSOMYG00000014563) COX7A2 (ENSOMYG00000018957) TMEM30A (ENSOMYG00000048151) FILIP1 (ENSOMYG00000018971) ENSOMYG00000065950 SENP6 (ENSOMYG00000000105) Salmo ANCESTRAL SPECIES 12 ENSGT00940000157612.b.a ENSGT00940000155982.e.b.g ENSGT00390000013305.a.a.d ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.w.a ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b ENSGT00950000183024.a.a.b.r.b ENSGT00390000001588.p ENSGT00390000006395.j.b ENSGT00940000155999.e.b.b #20 ENSGT00940000159137.b.b.c #21 ENSGT00940000159727.k.a #22 ENSGT00940000162247.f.f #23 ENSGT00670000098098.g #24 ENSGT00400000024959 ENSGT00940000162552.a.b.c #28 ENSGT00390000004987.kb #29 ENSGT00940000177607 ENSGT00550000074931.e #30 ENSGT00550000075046.h #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b.c ENSGT00940000154550.a.wb ENSGT00390000004660.C.a.a.d.b ENSGT00950000182852.A.a.a.a.e ENSGT00940000178265 ENSGT00940000155724.r.i Atlantic salmon MODERN SPECIES 25 ywhaqa (ENSSSAG00000075607) GRHL1 (ENSSSAG00000075614) klf11a (ENSSSAG00000075644) rrm2 (ENSSSAG00000083858) lgals8a (ENSSSAG00000112692) zdhhc14 (ENSSSAG00000075847) arid1b (ENSSSAG00000075859) CLDN20 (ENSSSAG00000102040) TIAM2 (ENSSSAG00000075929) ENSSSAG00000075966 PRKD3 (ENSSSAG00000075988) ENSSSAG00000076174 CEBPZ (ENSSSAG00000076185) FOXA2 (ENSSSAG00000076197) #20 PAX1 (ENSSSAG00000109984) #21 nkx2.2b (ENSSSAG00000116039) #22 nkx2.4b (ENSSSAG00000089853) #23 xrn2 (ENSSSAG00000076213) #24 ENSSSAG00000116873 INSM1 (ENSSSAG00000111736) #28 ENSSSAG00000076257 crnkl1 (ENSSSAG00000070218) #30 naa20 (ENSSSAG00000076414) #31 CD109 (ENSSSAG00000100303) COL12A1 (ENSSSAG00000076478) TMEM30A (ENSSSAG00000077188) FILIP1 (ENSSSAG00000077198) ENSSSAG00000114688 ENSSSAG00000077203 myo6a (ENSSSAG00000077285) ENSSSAG00000078745 River trout MODERN SPECIES taf1b (ENSSTUG00000028460) klf11a (ENSSTUG00000028441) RRM2 (ENSSTUG00000027410) LGALS8 (ENSSTUG00000027376) zdhhc14 (ENSSTUG00000027365) tmem242 (ENSSTUG00000027359) arid1b (ENSSTUG00000027017) CLDN20 (ENSSTUG00000026989) ENSSTUG00000026876 cnksr3 (ENSSTUG00000026824) PRKD3 (ENSSTUG00000026310) ndufaf7 (ENSSTUG00000026236) CEBPZ (ENSSTUG00000026199) FOXA2 (ENSSTUG00000026182) #20 PAX1 (ENSSTUG00000026174) #21 nkx2.2b (ENSSTUG00000026165) #22 nkx2.4b (ENSSTUG00000026147) #23 xrn2 (ENSSTUG00000025997) #24 ENSSTUG00000049264 insm1a (ENSSTUG00000049262) #28 ENSSTUG00000049255 #29 ENSSTUG00000049252 crnkl1 (ENSSTUG00000049237) #30 naa20 (ENSSTUG00000049230) #31 CD109 (ENSSTUG00000049218) COL12A1 (ENSSTUG00000047877) COX7A2 (ENSSTUG00000047757) TMEM30A (ENSSTUG00000047747) FILIP1 (ENSSTUG00000047741) SENP6 (ENSSTUG00000047702) myo6a (ENSSTUG00000047119) Huchen MODERN SPECIES 50 GRHL1 (ENSHHUG00000024127) klf11a (ENSHHUG00000024133) RRM2 (ENSHHUG00000024152) LGALS8 (ENSHHUG00000024294) zdhhc14 (ENSHHUG00000024302) tmem242 (ENSHHUG00000024309) arid1b (ENSHHUG00000024315) CLDN20 (ENSHHUG00000024324) TIAM2 (ENSHHUG00000024329) cnksr3 (ENSHHUG00000024360) PRKD3 (ENSHHUG00000024371) ndufaf7 (ENSHHUG00000024766) CEBPZ (ENSHHUG00000024789) FOXA2 (ENSHHUG00000024806) #20 PAX1 (ENSHHUG00000024814) #21 nkx2.2b (ENSHHUG00000024821) #22 nkx2.4b (ENSHHUG00000024823) #23 xrn2 (ENSHHUG00000024838) #24 ENSHHUG00000024877 insm1a (ENSHHUG00000024879) #28 CFAP61 (ENSHHUG00000024881) #29 crnkl1 (ENSHHUG00000024888) #30 naa20 (ENSHHUG00000024897) #31 ENSHHUG00000024901 CD109 (ENSHHUG00000024911) ENSHHUG00000024935 ENSHHUG00000025342 ENSHHUG00000025349 ENSHHUG00000025355 COX7A2 (ENSHHUG00000025358) TMEM30A (ENSHHUG00000025361) Salmoninae ANCESTRAL SPECIES 402 ENSGT00940000156483.h.b.e ENSGT00390000008642.w.b ENSGT00940000155634.q.b.d ENSGT00940000161252.h.k ENSGT00940000157012.l.d ENSGT00940000163429.B ENSGT00940000163429.A ENSGT00940000163429.C.a.b ENSGT00800000125320 ENSGT00950000183024.a.a.b.r.a ENSGT00390000001588.o ENSGT00390000006395.j.a ENSGT00500000045333 ENSGT00940000155999.e.b.a #20 ENSGT00940000159137.b.b.d #21 ENSGT00940000159727.k.b #22 ENSGT00940000162247.f.e #23 ENSGT00670000098098.h #24 ENSGT00940000162552.a.b.d #28 ENSGT00390000004987.jb #29 ENSGT00550000074931.f #30 ENSGT00550000075046.g #31 Salmoninae_a ANCESTRAL SPECIES 42 ENSGT00390000013305.a.a.c ENSGT00940000156483.h.b.e ENSGT00390000008642.w.b ENSGT00940000155634.q.b.d ENSGT00940000161252.h.k ENSGT00940000157012.l.d ENSGT00940000163429.A ENSGT00940000163429.C.a.b ENSGT00800000125320 ENSGT00950000183024.a.a.b.r.a ENSGT00390000001588.o ENSGT00390000006395.j.a ENSGT00500000045333 ENSGT00940000155999.e.b.a #20 ENSGT00940000159137.b.b.d #21 ENSGT00940000159727.k.b #22 ENSGT00940000162247.f.e #23 ENSGT00670000098098.h #24 ENSGT00940000162552.a.b.d #28 ENSGT00390000004987.jb #29 ENSGT00550000074931.f #30 ENSGT00550000075046.g #31 ENSGT00940000154923.C.w.b.d ENSGT01000000217321 ENSGT00390000004660.C.a.a.d.a ENSGT00950000182852.A.a.a.a.f ENSGT00940000155724.r.j ENSGT00940000156078.d.d ENSGT00530000063503.a.b.g.a.d ENSGT01010000222287.B.b.a.b.b.a.c ENSGT00530000063775.a.a.b.b Salmo ANCESTRAL SPECIES 26 ENSGT00390000013305.a.a.c ENSGT00940000156483.h.b.e ENSGT00390000008642.w.b ENSGT00940000155634.q.b.d ENSGT00940000161252.h.k ENSGT00940000157012.l.d ENSGT00940000163429.A ENSGT00940000163429.C.a.b ENSGT00800000125320 ENSGT00950000183024.a.a.b.r.a ENSGT00390000001588.o ENSGT00390000006395.j.a ENSGT00940000177839 ENSGT00940000155999.e.b.a #20 ENSGT00940000159137.b.b.d #21 ENSGT00940000159727.k.b #22 ENSGT00940000162247.f.e #23 ENSGT00670000098098.h #24 ENSGT00940000162552.a.b.d #28 ENSGT00390000004987.jb #29 ENSGT00550000074931.f #30 ENSGT00550000075046.g #31 ENSGT00940000154923.C.w.b.d ENSGT01000000217321 ENSGT00390000004660.C.a.a.d.a ENSGT00950000182852.A.a.a.a.f ENSGT00940000155724.r.j ENSGT00940000156078.d.d ENSGT00530000063503.a.b.g.a.d ENSGT01010000222287.B.b.a.b.b.a.c ENSGT00530000063775.a.a.b.b Atlantic salmon MODERN SPECIES 6 TMEM242 (ENSSSAG00000110220) arid1b (ENSSSAG00000067980) ENSSSAG00000110650 CLDN20 (ENSSSAG00000112623) TIAM2 (ENSSSAG00000068052) ENSSSAG00000068072 ENSSSAG00000068079 ENSSSAG00000068086 PRKD3 (ENSSSAG00000068132) ENSSSAG00000070053 ENSSSAG00000070058 ENSSSAG00000070063 ENSSSAG00000120483 ENSSSAG00000070069 #20 PAX1 (ENSSSAG00000101257) #21 nkx2.2b (ENSSSAG00000089576) #22 xrn2 (ENSSSAG00000070113) #24 nkx2.4b (ENSSSAG00000070080) #23 CFAP61 (ENSSSAG00000070165) #29 crnkl1 (ENSSSAG00000076271) #30 NAA20 (ENSSSAG00000070794) #31 COL12A1 (ENSSSAG00000070858) ENSSSAG00000071564 ENSSSAG00000088113 TMEM30A (ENSSSAG00000071571) FILIP1 (ENSSSAG00000071574) SENP6 (ENSSSAG00000071578) MYO6 (ENSSSAG00000071614) ENSSSAG00000098377 ENSSSAG00000072052 ENSSSAG00000083181 River trout MODERN SPECIES 28 zdhhc14 (ENSSTUG00000035173) tmem242 (ENSSTUG00000035167) arid1b (ENSSTUG00000034853) CLDN20 (ENSSTUG00000034819) ENSSTUG00000034457 ipcef1 (ENSSTUG00000034404) cnksr3 (ENSSTUG00000034360) ENSSTUG00000034355 PRKD3 (ENSSTUG00000034207) ENSSTUG00000034189 ndufaf7 (ENSSTUG00000034102) ENSSTUG00000034094 ENSSTUG00000034089 FOXA2 (ENSSTUG00000034068) #20 PAX1 (ENSSTUG00000034048) #21 nkx2.2b (ENSSTUG00000034037) #22 xrn2 (ENSSTUG00000033801) #24 insm1a (ENSSTUG00000033751) #28 CFAP61 (ENSSTUG00000033582) #29 crnkl1 (ENSSTUG00000033330) #30 naa20 (ENSSTUG00000033293) #31 COL12A1 (ENSSTUG00000031564) ENSSTUG00000031426 tmem30ab (ENSSTUG00000031410) FILIP1 (ENSSTUG00000031371) SENP6 (ENSSTUG00000031322) myo6a (ENSSTUG00000047396) HTR1B (ENSSTUG00000047370) ENSSTUG00000047366 nt5e (ENSSTUG00000047319) snx14 (ENSSTUG00000046427) Oncorhynchus ANCESTRAL SPECIES 35 ENSGT00940000155982.e.b.h ENSGT00390000013305.a.a.c ENSGT00940000156483.h.b.e ENSGT00940000155634.q.b.d ENSGT00940000161252.h.k ENSGT00940000157012.l.d ENSGT00940000163429.B ENSGT00940000163429.C.a.b ENSGT00800000125320 ENSGT00950000183024.a.a.b.r.a ENSGT00390000001588.o ENSGT00390000006395.j.a ENSGT00500000045333 ENSGT00940000155999.e.b.a #20 ENSGT00940000159137.b.b.d #21 ENSGT00940000159727.k.b #22 ENSGT00940000162247.f.e #23 ENSGT00670000098098.h #24 ENSGT00940000162552.a.b.d #28 ENSGT00390000004987.jb #29 ENSGT00550000074931.f #30 ENSGT00550000075046.g #31 ENSGT00940000154923.C.w.b.d ENSGT01000000217321 ENSGT00390000004660.C.a.a.d.a ENSGT00950000182852.A.a.a.a.f ENSGT00940000155724.r.j ENSGT00940000156078.d.d ENSGT00530000063503.a.b.g.a.d ENSGT01010000222287.B.b.a.b.b.a.c ENSGT00530000063775.a.a.b.b Oncorhynchus_a ANCESTRAL SPECIES 53 ENSGT00940000155982.e.b.h ENSGT00390000013305.a.a.c ENSGT00940000156483.h.b.e ENSGT00940000155634.q.b.d ENSGT00940000161252.h.k ENSGT00940000157012.l.d ENSGT00940000163429.B ENSGT00940000163429.C.a.b ENSGT00800000125320 ENSGT00950000183024.a.a.b.r.a ENSGT00390000001588.o ENSGT00390000006395.j.a ENSGT00500000045333 ENSGT00940000155999.e.b.a #20 ENSGT00940000159137.b.b.d #21 ENSGT00940000159727.k.b #22 ENSGT00940000162247.f.e #23 ENSGT00670000098098.h #24 ENSGT01010000229567 ENSGT00940000162552.a.b.d #28 ENSGT00390000004987.jb #29 ENSGT00550000074931.f #30 ENSGT00550000075046.g #31 ENSGT00940000154923.C.w.b.d ENSGT01000000217321 ENSGT00390000004660.C.a.a.d.a ENSGT00950000182852.A.a.a.a.f ENSGT00940000155724.r.j ENSGT00940000156078.d.d ENSGT00530000063503.a.b.g.a.d ENSGT01010000222287.B.b.a.b.b.a.c Coho salmon MODERN SPECIES 3 ZDHHC14 (ENSOKIG00005002341) ENSOKIG00005002369 ARID1B (ENSOKIG00005002502) CLDN20 (ENSOKIG00005002784) TIAM2 (ENSOKIG00005002825) ENSOKIG00005002958 ENSOKIG00005002996 ENSOKIG00005003030 PRKD3 (ENSOKIG00005003135) NDUFAF7 (ENSOKIG00005003407) ENSOKIG00005003425 ENSOKIG00005003432 CEBPZOS (ENSOKIG00005003436) FOXA2 (ENSOKIG00005003446) #20 PAX1 (ENSOKIG00005003462) #21 nkx2.2b (ENSOKIG00005003473) #22 nkx2.4b (ENSOKIG00005003479) #23 xrn2 (ENSOKIG00005003563) #24 ENSOKIG00005003675 insm1a (ENSOKIG00005003682) #28 CFAP61 (ENSOKIG00005003690) #29 crnkl1 (ENSOKIG00005003763) #30 naa20 (ENSOKIG00005004022) #31 COL12A1 (ENSOKIG00005004623) ENSOKIG00005006597 tmem30ab (ENSOKIG00005006608) FILIP1 (ENSOKIG00005006624) SENP6 (ENSOKIG00005006642) myo6a (ENSOKIG00005006753) ENSOKIG00005007188 HTR1B (ENSOKIG00005007222) Chinook salmon MODERN SPECIES 29 GRHL1 (ENSOTSG00005037941) klf11a (ENSOTSG00005037944) RRM2 (ENSOTSG00005037946) zdhhc14 (ENSOTSG00005039741) ENSOTSG00005039742 arid1b (ENSOTSG00005039746) CLDN20 (ENSOTSG00005039956) ENSOTSG00005039958 cnksr3 (ENSOTSG00005039971) ENSOTSG00005040269 PRKD3 (ENSOTSG00005040270) ndufaf7 (ENSOTSG00005040302) CEBPZOS (ENSOTSG00005040304) FOXA2 (ENSOTSG00005040307) #20 PAX1 (ENSOTSG00005040309) #21 nkx2.2b (ENSOTSG00005040312) #22 nkx2.4b (ENSOTSG00005040313) #23 xrn2 (ENSOTSG00005040315) #24 ENSOTSG00005040427 insm1a (ENSOTSG00005040428) #28 CFAP61 (ENSOTSG00005040429) #29 crnkl1 (ENSOTSG00005040432) #30 naa20 (ENSOTSG00005040544) #31 COL12A1 (ENSOTSG00005040589) ENSOTSG00005040710 tmem30ab (ENSOTSG00005040712) FILIP1 (ENSOTSG00005040713) SENP6 (ENSOTSG00005040715) myo6a (ENSOTSG00005040720) ENSOTSG00005041263 ENSOTSG00005041266 Rainbow trout MODERN SPECIES 29 ZDHHC14 (ENSOMYG00000043222) ARID1B (ENSOMYG00000043253) CLDN20 (ENSOMYG00000043347) ENSOMYG00000074547 TIAM2 (ENSOMYG00000043352) ENSOMYG00000043367 ENSOMYG00000043390 ENSOMYG00000043395 PRKD3 (ENSOMYG00000043521) ENSOMYG00000053641 ENSOMYG00000064703 NDUFAF7 (ENSOMYG00000043817) CEBPZOS (ENSOMYG00000077371) FOXA2 (ENSOMYG00000043829) #20 PAX1 (ENSOMYG00000043833) #21 nkx2.2b (ENSOMYG00000043836) #22 nkx2.1b (ENSOMYG00000043840) #23 xrn2 (ENSOMYG00000044000) #24 INSM1 (ENSOMYG00000044800) #28 CFAP61 (ENSOMYG00000044804) #29 crnkl1 (ENSOMYG00000044816) #30 NAA20 (ENSOMYG00000044832) #31 COL12A1 (ENSOMYG00000044935) ENSOMYG00000054017 ENSOMYG00000045200 TMEM30A (ENSOMYG00000045203) ENSOMYG00000045207 FILIP1 (ENSOMYG00000045212) SENP6 (ENSOMYG00000045216) myo6a (ENSOMYG00000045257) ENSOMYG00000045318 Huchen MODERN SPECIES 999 ENSHHUG00000046587 ENSHHUG00000046593 PRKD3 (ENSHHUG00000046597) ndufaf7 (ENSHHUG00000046712) ENSHHUG00000046729 ENSHHUG00000046740 CEBPZOS (ENSHHUG00000046752) FOXA2 (ENSHHUG00000046764) #20 PAX1 (ENSHHUG00000046766) #21 nkx2.2b (ENSHHUG00000046770) #22 xrn2 (ENSHHUG00000046774) #24 nkx2.4b (ENSHHUG00000046811) #23 ENSHHUG00000046840 insm1a (ENSHHUG00000046845) #28 Salmoninae ANCESTRAL SPECIES 162 ENSGT00940000159137.b.a.f #21 ENSGT00940000159727.l #22 ENSGT00940000162247.e.d #23 ENSGT00940000181269 ENSGT00950000183139.A.eb #27 ENSGT00940000162552.a.a.c #28 ENSGT01020000230338.a.b.b.a.b.b.a ENSGT00940000178139 ENSGT00940000158000.f.a ENSGT00940000157491 ENSGT00940000158484.c ENSGT01030000234513.A.a.a.a.a.e.c ENSGT01030000234513.A.a.a.a.b.c.b.d ENSGT00940000165717 ENSGT00940000177851 ENSGT00940000158790.lb ENSGT00940000154788.d.b Salmoninae_a DUPLICATION Salmoninae_a DUPLICATION Salmoninae_a ANCESTRAL SPECIES 36 ENSGT00940000161983.a.g.b ENSGT00940000168209.a.a ENSGT00940000155727.o.a.b ENSGT00940000156483.h.a.b ENSGT00940000155634.q.a.a ENSGT00950000183142.a.b.a.a.l ENSGT00940000161252.g.c ENSGT00940000157012.k.d ENSGT00530000063946.b.h ENSGT00940000163429.D.u ENSGT00390000003107.a.e ENSGT00940000160847.f.b ENSGT00950000183024.a.a.b.q.b ENSGT00940000155999.e.a.e #20 ENSGT00940000159137.b.a.e #21 ENSGT00940000159727.l.a.a #22 ENSGT00940000162247.e.c #23 ENSGT00390000010121 #25 ENSGT00950000183139.A.db #27 ENSGT00940000162552.a.a.d #28 ENSGT00530000063555.B ENSGT00940000158000.f.b ENSGT00940000158484.d ENSGT01030000234513.A.a.a.a.a.e.d ENSGT01030000234513.A.a.a.a.b.c.b.c ENSGT00940000158790.kb ENSGT00940000154788.d.a ENSGT00940000154301.a.a.a ENSGT00940000159864.j ENSGT00940000159693.a ENSGT00940000163547.j Oncorhynchus ANCESTRAL SPECIES 36 ENSGT00940000161983.a.g.b ENSGT00940000168209.a.a ENSGT00940000155727.o.a.b ENSGT00940000156483.h.a.b ENSGT00940000155634.q.a.a ENSGT00950000183142.a.b.a.a.l ENSGT00940000161252.g.c ENSGT00940000157012.k.d ENSGT00530000063946.b.h ENSGT00940000163429.D.u ENSGT00390000003107.a.e ENSGT00940000160847.f.b ENSGT00950000183024.a.a.b.q.b ENSGT00940000155999.e.a.e #20 ENSGT00940000159137.b.a.e #21 ENSGT00940000159727.l.a.a #22 ENSGT00940000162247.e.c #23 ENSGT00390000010121 #25 ENSGT00950000183139.A.db #27 ENSGT00940000162552.a.a.d #28 ENSGT00530000063555.B ENSGT00940000158000.f.b ENSGT00940000158484.d ENSGT01030000234513.A.a.a.a.a.e.d ENSGT01030000234513.A.a.a.a.b.c.b.c ENSGT00940000158790.kb ENSGT00940000154788.d.a ENSGT00940000154301.a.a.a ENSGT00940000159864.j ENSGT00940000159693.a ENSGT00940000166051.c.a Rainbow trout MODERN SPECIES 17 ENSOMYG00000038063 ENSOMYG00000038073 ARID1B (ENSOMYG00000038082) ENSOMYG00000058940 ENSOMYG00000073937 TFB1M (ENSOMYG00000038090) CLDN20 (ENSOMYG00000038099) TIAM2 (ENSOMYG00000038122) SCAF8 (ENSOMYG00000038218) ENSOMYG00000038339 ENSOMYG00000038526 mocs3 (ENSOMYG00000038669) ENSOMYG00000038796 foxa2 (ENSOMYG00000038896) #20 pax1a (ENSOMYG00000038906) #21 nkx2.2a (ENSOMYG00000038942) #22 nkx2.4a (ENSOMYG00000038951) #23 kiz (ENSOMYG00000038967) #25 RALGAPA2 (ENSOMYG00000039887) #27 ENSOMYG00000041964 insm1b (ENSOMYG00000042023) #28 ENSOMYG00000042028 gale (ENSOMYG00000042036) hmgcl (ENSOMYG00000042105) gjb3 (ENSOMYG00000042179) gjb10 (ENSOMYG00000042186) ppie (ENSOMYG00000042196) pabpc4 (ENSOMYG00000042258) lck (ENSOMYG00000042429) ENSOMYG00000043040 tdh2 (ENSOMYG00000043045) Oncorhynchus_a ANCESTRAL SPECIES 33 ENSGT00940000161983.a.g.b ENSGT00940000168209.a.a ENSGT00940000155727.o.a.b ENSGT00940000156483.h.a.b ENSGT00940000155634.q.a.a ENSGT00940000161252.g.c ENSGT00950000183142.a.b.a.a.l ENSGT00940000157012.k.d ENSGT00530000063946.b.h ENSGT00940000163429.D.u ENSGT00390000003107.a.e ENSGT00940000160847.f.b ENSGT00950000183024.a.a.b.q.b ENSGT00940000155999.e.a.e #20 ENSGT00940000159137.b.a.e #21 ENSGT00940000159727.l.a.a #22 ENSGT00940000162247.e.c #23 ENSGT00390000010121 #25 ENSGT00950000183139.A.db #27 ENSGT00940000162552.a.a.d #28 ENSGT00530000063555.B ENSGT00940000158000.f.b ENSGT00940000158484.d ENSGT01030000234513.A.a.a.a.a.e.d ENSGT01030000234513.A.a.a.a.b.c.b.c ENSGT00940000158790.kb ENSGT00940000154788.d.a ENSGT00940000154301.a.a.a ENSGT00940000159864.j ENSGT00940000159693.a ENSGT00940000166051.c.a Coho salmon MODERN SPECIES 5 KBTBD11 (ENSOKIG00005040184) ENSOKIG00005040155 ENSOKIG00005040142 ZDHHC14 (ENSOKIG00005040125) ARID1B (ENSOKIG00005039537) CLDN20 (ENSOKIG00005039464) tfb1m (ENSOKIG00005039432) TIAM2 (ENSOKIG00005039325) SCAF8 (ENSOKIG00005039089) ENSOKIG00005038859 QPCT (ENSOKIG00005038340) mocs3 (ENSOKIG00005038084) PRKD3 (ENSOKIG00005037853) foxa2 (ENSOKIG00005037814) #20 pax1a (ENSOKIG00005037755) #21 nkx2.2a (ENSOKIG00005037708) #22 nkx2.4a (ENSOKIG00005037680) #23 kiz (ENSOKIG00005037639) #25 RALGAPA2 (ENSOKIG00005029731) #27 insm1b (ENSOKIG00005029293) #28 ENSOKIG00005029266 gale (ENSOKIG00005028994) hmgcl (ENSOKIG00005028739) gjb3 (ENSOKIG00005018229) ENSOKIG00005018223 gjb10 (ENSOKIG00005018212) PPIE (ENSOKIG00005018171) pabpc4 (ENSOKIG00005017764) ENSOKIG00005017633 lck (ENSOKIG00005016997) FAM167B (ENSOKIG00005016942) Chinook salmon MODERN SPECIES 32 KBTBD11 (ENSOTSG00005015902) ENSOTSG00005015905 LGALS8 (ENSOTSG00005015914) ENSOTSG00005015922 ENSOTSG00005015943 tfb1m (ENSOTSG00005015947) CLDN20 (ENSOTSG00005015949) TIAM2 (ENSOTSG00005015950) ENSOTSG00005015955 ENSOTSG00005015961 QPCT (ENSOTSG00005015964) mocs3 (ENSOTSG00005016153) PRKD3 (ENSOTSG00005016162) foxa2 (ENSOTSG00005017605) #20 pax1a (ENSOTSG00005017607) #21 nkx2.2a (ENSOTSG00005017608) #22 nkx2.4a (ENSOTSG00005017609) #23 kiz (ENSOTSG00005017610) #25 RALGAPA2 (ENSOTSG00005017616) #27 hdac1 (ENSOTSG00005017933) insm1b (ENSOTSG00005017967) #28 ENSOTSG00005017972 gale (ENSOTSG00005017979) hmgcl (ENSOTSG00005018036) gjb3 (ENSOTSG00005018053) gjb10 (ENSOTSG00005018055) ppie (ENSOTSG00005018057) pabpc4 (ENSOTSG00005018070) lck (ENSOTSG00005001226) FAM167B (ENSOTSG00005001382) tdh2 (ENSOTSG00005001384) Salmoninae_a ANCESTRAL SPECIES ENSGT00940000159727.l.a.b #22 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000159727.l.a.b #22 Rainbow trout MODERN SPECIES 10 ENSOMYG00000067320 ENSOMYG00000035652 ENSOMYG00000064757 ARID1B (ENSOMYG00000035639) ENSOMYG00000072197 TFB1M (ENSOMYG00000035628) CLDN20 (ENSOMYG00000035624) ENSOMYG00000035611 SCAF8 (ENSOMYG00000035587) ENSOMYG00000035553 mocs3 (ENSOMYG00000035466) ENSOMYG00000033799 ENSOMYG00000050088 foxa2 (ENSOMYG00000033662) #20 pax1a (ENSOMYG00000033650) #21 nkx2.2a (ENSOMYG00000033637) #22 nkx2.4a (ENSOMYG00000033618) #23 ENSOMYG00000073718 ENSOMYG00000050271 ENSOMYG00000033380 #27 insm1b (ENSOMYG00000033145) #28 gale (ENSOMYG00000033097) zbtb8a (ENSOMYG00000033041) hmgcl (ENSOMYG00000033018) gjb3 (ENSOMYG00000032965) gjb10 (ENSOMYG00000032959) ppie (ENSOMYG00000032863) pabpc4 (ENSOMYG00000032583) tmem54a (ENSOMYG00000032471) ENSOMYG00000032439 lck (ENSOMYG00000032229) Salmo ANCESTRAL SPECIES ENSGT00940000159727.l.a.b #22 Atlantic salmon MODERN SPECIES ENSSSAG00000015506 ENSSSAG00000072638 ARID1B (ENSSSAG00000072642) TFB1M (ENSSSAG00000072654) CLDN20 (ENSSSAG00000099671) TIAM2 (ENSSSAG00000072655) SCAF8 (ENSSSAG00000072667) ENSSSAG00000099631 ENSSSAG00000072670 ENSSSAG00000072677 mocs3 (ENSSSAG00000120534) ENSSSAG00000072714 foxa2 (ENSSSAG00000073018) #20 ENSSSAG00000116674 pax1a (ENSSSAG00000000114) #21 nx22a (ENSSSAG00000000142) #22 nkx2.4a (ENSSSAG00000000151) #23 ENSSSAG00000000813 #27 insm1b (ENSSSAG00000085113) #28 ENSSSAG00000001849 gale (ENSSSAG00000001865) ENSSSAG00000001852 zbtb8a (ENSSSAG00000085500) hmgcl (ENSSSAG00000001907) gjb3 (ENSSSAG00000001930) ENSSSAG00000001941 pabpc4 (ENSSSAG00000002003) tmem54a (ENSSSAG00000089587) HDA1B (ENSSSAG00000002904) lck (ENSSSAG00000002976) ENSSSAG00000121492 Salmoninae_a DUPLICATION Salmoninae_a ANCESTRAL SPECIES ENSGT00940000159727.l.b.a #22 Salmo ANCESTRAL SPECIES 11 ENSGT00940000168209.b ENSGT00940000155727.o.a.b ENSGT00940000156483.h.a.b ENSGT00940000155634.q.a.a ENSGT00950000183142.a.b.a.a.l ENSGT00940000161252.g.c ENSGT00940000157012.k.d ENSGT00530000063946.b.h ENSGT00980000202819 ENSGT00940000163429.D.u ENSGT00390000003107.a.e ENSGT00940000160847.f.b ENSGT00950000183024.a.a.b.q.b ENSGT00940000155999.e.a.e #20 ENSGT00940000159137.b.a.e #21 ENSGT00940000159727.l.b.a #22 ENSGT00940000162247.e.c #23 ENSGT00390000010121 #25 ENSGT00950000183139.A.db #27 ENSGT00940000162552.a.a.d #28 ENSGT00530000063555.B ENSGT00940000158000.f.b ENSGT00940000158484.d ENSGT01030000234513.A.a.a.a.a.e.d ENSGT01030000234513.A.a.a.a.b.c.b.c ENSGT00940000158790.kb ENSGT00940000154788.d.a ENSGT00940000154301.a.a.a ENSGT00940000159864.j ENSGT00940000159693.a ENSGT00940000163547.j Atlantic salmon MODERN SPECIES 28 ENSSSAG00000114477 ENSSSAG00000072578 ENSSSAG00000015527 ARID1B (ENSSSAG00000015542) ENSSSAG00000115039 ENSSSAG00000015637 TFB1M (ENSSSAG00000015593) CLDN20 (ENSSSAG00000096258) ENSSSAG00000015804 ENSSSAG00000016312 ENSSSAG00000024626 mocs3 (ENSSSAG00000025382) ENSSSAG00000028951 foxa2 (ENSSSAG00000043357) #20 pax1a (ENSSSAG00000043378) #21 nkx2-2 (ENSSSAG00000043447) #22 ENSSSAG00000112391 nkx2.4a (ENSSSAG00000090977) #23 kiz (ENSSSAG00000043490) #25 RALGAPA2 (ENSSSAG00000043732) #27 insm1b (ENSSSAG00000089839) #28 ENSSSAG00000057616 ENSSSAG00000057641 hmgcl (ENSSSAG00000057713) ENSSSAG00000060067 ENSSSAG00000082020 ENSSSAG00000060194 ENSSSAG00000062161 lck (ENSSSAG00000062806) zgc:154055 (ENSSSAG00000064181) tdh2 (ENSSSAG00000103861) River trout MODERN SPECIES 17 ENSSTUG00000003642 LGALS8 (ENSSTUG00000003623) ZDHHC14 (ENSSTUG00000003602) ENSSTUG00000003438 CLDN20 (ENSSTUG00000003398) tfb1m (ENSSTUG00000003383) TIAM2 (ENSSTUG00000003260) ENSSTUG00000003228 ENSSTUG00000050062 ENSSTUG00000050047 QPCT (ENSSTUG00000050040) mocs3 (ENSSTUG00000050034) PRKD3 (ENSSTUG00000050017) foxa2 (ENSSTUG00000050008) #20 pax1a (ENSSTUG00000050005) #21 nkx2.2a (ENSSTUG00000049999) #22 nkx2.4a (ENSSTUG00000049996) #23 kiz (ENSSTUG00000049984) #25 RALGAPA2 (ENSSTUG00000049606) #27 insm1b (ENSSTUG00000049579) #28 ENSSTUG00000049573 gale (ENSSTUG00000049557) hmgcl (ENSSTUG00000049542) gjb3 (ENSSTUG00000049534) gjb10 (ENSSTUG00000049533) ppie (ENSSTUG00000049515) pabpc4 (ENSSTUG00000049382) hdac1 (ENSSTUG00000049345) lck (ENSSTUG00000048944) FAM167B (ENSSTUG00000048916) zgc:154055 (ENSSTUG00000048904) Salmoninae_a ANCESTRAL SPECIES 8 ENSGT00940000161983.a.g.a ENSGT00940000155727.o.a.a ENSGT01030000235099 ENSGT00940000156483.h.a.a ENSGT00940000155634.q.a.b ENSGT00940000161252.g.d ENSGT00950000183142.a.b.a.a.k ENSGT00940000157012.k.c ENSGT00530000063946.b.g ENSGT00940000163429.D.v ENSGT00390000003107.a.f ENSGT00940000160847.f.a ENSGT00950000183024.a.a.b.q.a ENSGT00940000155999.e.a.f #20 ENSGT00940000159137.b.a.f #21 ENSGT00940000159727.l.b.b #22 ENSGT00940000162247.e.d #23 ENSGT00950000183139.A.eb #27 ENSGT00940000162552.a.a.c #28 ENSGT01020000230338.a.b.b.a.b.b.a ENSGT00940000178139 ENSGT00940000158000.f.a ENSGT00940000157491 ENSGT00940000158484.c ENSGT01030000234513.A.a.a.a.a.e.c ENSGT01030000234513.A.a.a.a.b.c.b.d ENSGT00940000165717 ENSGT00940000177851 ENSGT00940000158790.lb ENSGT00940000154788.d.b ENSGT00390000004700.a.g Oncorhynchus ANCESTRAL SPECIES 6 ENSGT00940000161983.a.g.a ENSGT00940000155727.o.a.a ENSGT01030000235099 ENSGT00940000156483.h.a.a ENSGT00940000155634.q.a.b ENSGT00940000161252.g.d ENSGT00950000183142.a.b.a.a.k ENSGT00940000157012.k.c ENSGT00530000063946.b.g ENSGT00940000163429.D.v ENSGT00390000003107.a.f ENSGT00940000160847.f.a ENSGT00950000183024.a.a.b.q.a ENSGT00940000155999.e.a.f #20 ENSGT00940000159137.b.a.f #21 ENSGT00940000159727.l.b.b #22 ENSGT00940000162247.e.d #23 ENSGT00950000183139.A.eb #27 ENSGT00940000162552.a.a.c #28 ENSGT01020000230338.a.b.b.a.b.b.a ENSGT00940000158000.f.a ENSGT00940000157491 ENSGT00940000158484.c ENSGT01030000234513.A.a.a.a.a.e.c ENSGT01030000234513.A.a.a.a.b.c.b.d ENSGT00940000177851 ENSGT00940000158790.lb ENSGT00940000154788.d.b ENSGT00390000004700.a.g ENSGT00940000154301.a.a.b ENSGT00940000159864.i Oncorhynchus_a ANCESTRAL SPECIES 10 ENSGT00940000161983.a.g.a ENSGT00940000155727.o.a.a ENSGT01030000235099 ENSGT00940000156483.h.a.a ENSGT00940000155634.q.a.b ENSGT00940000161252.g.d ENSGT00950000183142.a.b.a.a.k ENSGT00940000157012.k.c ENSGT00530000063946.b.g ENSGT00940000163429.D.v ENSGT00390000003107.a.f ENSGT00940000160847.f.a ENSGT00950000183024.a.a.b.q.a ENSGT00940000155999.e.a.f #20 ENSGT00940000159137.b.a.f #21 ENSGT00940000159727.l.b.b #22 ENSGT00940000162247.e.d #23 ENSGT00950000183139.A.eb #27 ENSGT00940000162552.a.a.c #28 ENSGT01020000230338.a.b.b.a.b.b.a ENSGT00940000158000.f.a ENSGT00940000157491 ENSGT00940000158484.c ENSGT01030000234513.A.a.a.a.a.e.c ENSGT01030000234513.A.a.a.a.b.c.b.d ENSGT00940000177851 ENSGT00940000158790.lb ENSGT00940000154788.d.b ENSGT00390000004700.a.g ENSGT00940000154301.a.a.b ENSGT00940000159864.i Chinook salmon MODERN SPECIES 2 ENSOTSG00005001791 ZDHHC14 (ENSOTSG00005001776) ENSOTSG00005001771 LGALS8 (ENSOTSG00005001764) KBTBD11 (ENSOTSG00005001758) TIAM2 (ENSOTSG00005001753) ENSOTSG00005001750 ENSOTSG00005001746 ENSOTSG00005001492 ENSOTSG00005001479 mocs3 (ENSOTSG00005001455) ENSOTSG00005001451 PRKD3 (ENSOTSG00005001003) foxa2 (ENSOTSG00005000955) #20 pax1a (ENSOTSG00005000943) #21 NKX2-2 (ENSOTSG00005000937) #22 nkx2.4a (ENSOTSG00005000906) #23 eno3 (ENSOTSG00005000887) slc25a11 (ENSOTSG00005000863) ENSOTSG00005000712 ENSOTSG00005011417 ENSOTSG00005011416 ENSOTSG00005011414 ENSOTSG00005011412 #27 insm1b (ENSOTSG00005011411) #28 ENSOTSG00005011410 gale (ENSOTSG00005011241) zbtb8a (ENSOTSG00005011240) hmgcl (ENSOTSG00005010958) gjb3 (ENSOTSG00005010955) gjb10 (ENSOTSG00005010953) Coho salmon MODERN SPECIES 27 LGALS8 (ENSOKIG00005002339) ZDHHC14 (ENSOKIG00005002332) ARID1B (ENSOKIG00005002319) CLDN20 (ENSOKIG00005002314) TFB1M (ENSOKIG00005002291) ENSOKIG00005002279 TIAM2 (ENSOKIG00005002104) SCAF8 (ENSOKIG00005002046) ENSOKIG00005002031 ENSOKIG00005001793 QPCT (ENSOKIG00005034150) mocs3 (ENSOKIG00005034087) PRKD3 (ENSOKIG00005033931) foxa2 (ENSOKIG00005033911) #20 pax1a (ENSOKIG00005033872) #21 NKX2-2 (ENSOKIG00005033837) #22 nkx2.4a (ENSOKIG00005033801) #23 ENSOKIG00005033792 ENSOKIG00005033782 RALGAPA2 (ENSOKIG00005024174) #27 insm1b (ENSOKIG00005023594) #28 ENSOKIG00005023591 gale (ENSOKIG00005023529) zbtb8a (ENSOKIG00005023509) hmgcl (ENSOKIG00005023283) gjb3 (ENSOKIG00005023243) gjb10 (ENSOKIG00005023226) ENSOKIG00005023217 ppie (ENSOKIG00005023130) pabpc4 (ENSOKIG00005022837) tmem54a (ENSOKIG00005022747) Salmo ANCESTRAL SPECIES 8 ENSGT00940000153798.A.a.h ENSGT00940000161983.a.g.a ENSGT00940000155727.o.a.a ENSGT00940000156483.h.a.a ENSGT00940000155634.q.a.b ENSGT00950000183142.a.b.a.a.k ENSGT00940000161252.g.d ENSGT00940000157012.k.c ENSGT00530000063946.b.g ENSGT00940000163429.D.v ENSGT00390000003107.a.f ENSGT00940000160847.f.a ENSGT00950000183024.a.a.b.q.a ENSGT00940000155999.e.a.f #20 ENSGT00940000159137.b.a.f #21 ENSGT00940000159727.l.b.b #22 ENSGT00940000162247.e.d #23 ENSGT00950000183139.A.eb #27 ENSGT00940000162552.a.a.c #28 ENSGT01020000230338.a.b.b.a.b.b.a ENSGT00940000178139 ENSGT00940000158000.f.a ENSGT00940000157491 ENSGT00940000158484.c ENSGT01030000234513.A.a.a.a.a.e.c ENSGT01030000234513.A.a.a.a.b.c.b.d ENSGT00940000165717 ENSGT00940000154788.d.b ENSGT00390000004700.a.g ENSGT00940000154301.a.a.b ENSGT00940000159864.i River trout MODERN SPECIES 26 KBTBD11 (ENSSTUG00000037059) LGALS8 (ENSSTUG00000027850) ENSSTUG00000027846 ZDHHC14 (ENSSTUG00000027836) ENSSTUG00000027805 CLDN20 (ENSSTUG00000027794) tfb1m (ENSSTUG00000027747) TIAM2 (ENSSTUG00000027671) ENSSTUG00000027665 ENSSTUG00000027569 ENSSTUG00000027551 mocs3 (ENSSTUG00000027512) PRKD3 (ENSSTUG00000027407) foxa2 (ENSSTUG00000027398) #20 pax1a (ENSSTUG00000027380) #21 nkx2.2a (ENSSTUG00000027367) #22 nkx2.4a (ENSSTUG00000027350) #23 ENSSTUG00000027344 RALGAPA2 (ENSSTUG00000023156) #27 insm1b (ENSSTUG00000023013) #28 ENSSTUG00000023003 ENSSTUG00000022995 gale (ENSSTUG00000022860) zbtb8a (ENSSTUG00000022847) hmgcl (ENSSTUG00000022725) gjb3 (ENSSTUG00000022694) gjb10 (ENSSTUG00000022685) ENSSTUG00000022640 pabpc4 (ENSSTUG00000022421) tmem54a (ENSSTUG00000022400) hdac1 (ENSSTUG00000022283) Huchen DUPLICATION Huchen MODERN SPECIES 1671 pax1a (ENSHHUG00000048887) #21 nkx2.2a (ENSHHUG00000048910) #22 nkx2.4a (ENSHHUG00000048926) #23 ENSHHUG00000048932 ENSHHUG00000048935 #27 Huchen MODERN SPECIES 293 tfb1m (ENSHHUG00000006862) CLDN20 (ENSHHUG00000006870) TIAM2 (ENSHHUG00000006874) SCAF8 (ENSHHUG00000006897) ENSHHUG00000007091 QPCT (ENSHHUG00000007349) mocs3 (ENSHHUG00000007615) PRKD3 (ENSHHUG00000007643) foxa2 (ENSHHUG00000007803) #20 pax1a (ENSHHUG00000007815) #21 NKX2-2 (ENSHHUG00000007835) #22 nkx2.4a (ENSHHUG00000007860) #23 kiz (ENSHHUG00000007868) #25 Acanthomorphata ANCESTRAL SPECIES 7 ENSGT00940000155634.q.a ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.C ENSGT00800000125320 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000165717 Euacanthomorphacea ANCESTRAL SPECIES 27 ENSGT00940000156483.h.a ENSGT00940000155634.q.a ENSGT00940000161252.g ENSGT00950000183142.a.b.a.a ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.C ENSGT00800000125320 ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 Pinecone sodierfish DUPLICATION Pinecone sodierfish MODERN SPECIES 14 cln8 (ENSMMDG00005022374) ARHGEF10 (ENSMMDG00005021918) KBTBD11 (ENSMMDG00005021890) LGALS8 (ENSMMDG00005021888) ZDHHC14 (ENSMMDG00005021886) ARID1B (ENSMMDG00005021878) CLDN20 (ENSMMDG00005021875) tfb1m (ENSMMDG00005021874) TIAM2 (ENSMMDG00005021865) ENSMMDG00005021856 QPCT (ENSMMDG00005021846) mocs3 (ENSMMDG00005021833) PRKD3 (ENSMMDG00005021825) foxa2 (ENSMMDG00005021817) #20 pax1a (ENSMMDG00005021815) #21 nkx2.2a (ENSMMDG00005021812) #22 nkx2.4a (ENSMMDG00005021810) #23 kiz (ENSMMDG00005021808) #25 RALGAPA2 (ENSMMDG00005021069) #27 insm1b (ENSMMDG00005021047) #28 ENSMMDG00005021045 gale (ENSMMDG00005021006) zbtb8a (ENSMMDG00005021002) hmgcl (ENSMMDG00005020996) gjb3 (ENSMMDG00005020991) gjb10 (ENSMMDG00005020990) ppie (ENSMMDG00005020986) pabpc4 (ENSMMDG00005020922) ENSMMDG00005020905 tmem54a (ENSMMDG00005020902) hdac1 (ENSMMDG00005020864) Pinecone sodierfish MODERN SPECIES 16 angel2 (ENSMMDG00005011470) galnt14 (ENSMMDG00005011400) ZFAND3 (ENSMMDG00005011394) BTBD9 (ENSMMDG00005011366) ENSMMDG00005011353 crip2l (ENSMMDG00005011350) ipcef1 (ENSMMDG00005011347) cnksr3 (ENSMMDG00005011339) ENSMMDG00005011335 PRKD3 (ENSMMDG00005011325) ndufaf7 (ENSMMDG00005011273) CEBPZOS (ENSMMDG00005011264) cebpz (ENSMMDG00005011256) FOXA2 (ENSMMDG00005011254) #20 ENSMMDG00005011249 #21 nkx2.2b (ENSMMDG00005011246) #22 NKX2-4 (ENSMMDG00005011243) #23 xrn2 (ENSMMDG00005011225) #24 ENSMMDG00005011211 insm1a (ENSMMDG00005011210) #28 ENSMMDG00005011207 ENSMMDG00005011204 #29 ENSMMDG00005011202 crnkl1 (ENSMMDG00005011162) #30 naa20 (ENSMMDG00005011150) #31 ENSMMDG00005011057 COL12A1 (ENSMMDG00005010765) ptger2b (ENSMMDG00005010715) ptger2b (ENSMMDG00005010711) zfp36l1b (ENSMMDG00005010708) rad51b (ENSMMDG00005010705) Percomorphaceae ANCESTRAL SPECIES 26 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 Tiger tail seahorse MODERN SPECIES 34 pax1a (ENSHCOG00000015849) #21 nkx2.2a (ENSHCOG00000015830) #22 nkx2.4a (ENSHCOG00000015821) #23 kiz (ENSHCOG00000015813) #25 Percomorphaceae_B ANCESTRAL SPECIES 11 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158016.c.b ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 Percomorphaceae_C ANCESTRAL SPECIES 12 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00440000039084.b ENSGT00530000063555.B ENSGT00940000158016.c.b ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 Percomorphaceae_D ANCESTRAL SPECIES 10 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00440000039084.b ENSGT00530000063555.B ENSGT00940000158016.c.b ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 Anabantaria ANCESTRAL SPECIES 10 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT00940000176015 ENSGT00390000004700.a.g ENSGT00940000154301.a.a Zig-zag eel DUPLICATION Zig-zag eel MODERN SPECIES 14 ENSMAMG00000009185 CD109 (ENSMAMG00000009196) COL12A1 (ENSMAMG00000009244) TMEM30A (ENSMAMG00000009375) FILIP1 (ENSMAMG00000009415) TFB1M (ENSMAMG00000009423) CLDN20 (ENSMAMG00000009442) TIAM2 (ENSMAMG00000027010) SCAF8 (ENSMAMG00000009457) ENSMAMG00000009556 ENSMAMG00000009597 mocs3 (ENSMAMG00000009608) ENSMAMG00000009663 foxa2 (ENSMAMG00000009755) #20 pax1a (ENSMAMG00000009767) #21 nkx2.2a (ENSMAMG00000009772) #22 nkx2.4a (ENSMAMG00000009778) #23 kiz (ENSMAMG00000009805) #25 RALGAPA2 (ENSMAMG00000009848) #27 insm1b (ENSMAMG00000009906) #28 gale (ENSMAMG00000009920) zbtb8a (ENSMAMG00000009956) hmgcl (ENSMAMG00000009970) gjb3 (ENSMAMG00000009979) gjb10 (ENSMAMG00000009991) ppie (ENSMAMG00000010005) pabpc4 (ENSMAMG00000010025) ENSMAMG00000010113 tmem54a (ENSMAMG00000024316) ENSMAMG00000010154 ENSMAMG00000027027 Zig-zag eel MODERN SPECIES 16 ENSMAMG00000019668 hivep2a (ENSMAMG00000019675) ENSMAMG00000019684 myt1la (ENSMAMG00000019692) ENSMAMG00000019725 rps7 (ENSMAMG00000019738) ENSMAMG00000025934 ENSMAMG00000019770 ENSMAMG00000026833 PRKD3 (ENSMAMG00000019782) NDUFAF7 (ENSMAMG00000019800) CEBPZ (ENSMAMG00000019826) CEBPZOS (ENSMAMG00000019833) ENSMAMG00000019846 ENSMAMG00000019851 #20 nkx2.2b (ENSMAMG00000019854) #22 ENSMAMG00000008594 #23 xrn2 (ENSMAMG00000008633) #24 ENSMAMG00000008675 ENSMAMG00000008678 INSM1 (ENSMAMG00000008707) #28 ENSMAMG00000008717 #29 ENSMAMG00000008745 crnkl1 (ENSMAMG00000008757) #30 naa20 (ENSMAMG00000008766) #31 CD109 (ENSMAMG00000008795) ENSMAMG00000026336 COL12A1 (ENSMAMG00000008858) COX7A2 (ENSMAMG00000026109) TMEM30A (ENSMAMG00000009381) FILIP1 (ENSMAMG00000009424) Anabantoidei ANCESTRAL SPECIES 9 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00980000202819 ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT00390000004700.a.g ENSGT00940000154301.a.a ENSGT00940000159864 Siamese fighting fish DUPLICATION Siamese fighting fish MODERN SPECIES 12 ENSBSLG00000025497 ENSBSLG00000025503 ENSBSLG00000025510 tmem30aa (ENSBSLG00000025738) FILIP1 (ENSBSLG00000025744) tfb1m (ENSBSLG00000025756) CLDN20 (ENSBSLG00000025761) TIAM2 (ENSBSLG00000025765) ENSBSLG00000025944 ENSBSLG00000025988 QPCT (ENSBSLG00000026015) mocs3 (ENSBSLG00000026026) PRKD3 (ENSBSLG00000026106) foxa2 (ENSBSLG00000026201) #20 pax1a (ENSBSLG00000026207) #21 nkx2.2a (ENSBSLG00000026218) #22 nkx2.4a (ENSBSLG00000026220) #23 kiz (ENSBSLG00000026227) #25 RALGAPA2 (ENSBSLG00000026253) #27 ENSBSLG00000026283 insm1b (ENSBSLG00000026287) #28 gale (ENSBSLG00000026291) zbtb8a (ENSBSLG00000014697) hmgcl (ENSBSLG00000014730) gjb3 (ENSBSLG00000014842) gjb10 (ENSBSLG00000014846) ENSBSLG00000014855 pabpc4 (ENSBSLG00000014896) tmem54a (ENSBSLG00000016093) hdac1 (ENSBSLG00000016101) lck (ENSBSLG00000016810) Siamese fighting fish MODERN SPECIES 13 ENSBSLG00000011479 mei4 (ENSBSLG00000011446) HTR1B (ENSBSLG00000011445) ENSBSLG00000011444 ENSBSLG00000011438 SENP6 (ENSBSLG00000011383) FILIP1 (ENSBSLG00000011376) tmem30ab (ENSBSLG00000011366) ENSBSLG00000011361 PRKD3 (ENSBSLG00000011152) ndufaf7 (ENSBSLG00000011121) cebpz (ENSBSLG00000011061) CEBPZOS (ENSBSLG00000011045) FOXA2 (ENSBSLG00000011033) #20 ENSBSLG00000011001 #21 nkx2.2b (ENSBSLG00000010992) #22 NKX2-4 (ENSBSLG00000010987) #23 xrn2 (ENSBSLG00000010798) #24 ENSBSLG00000010750 insm1a (ENSBSLG00000010738) #28 ENSBSLG00000010682 CFAP61 (ENSBSLG00000010607) #29 crnkl1 (ENSBSLG00000009842) #30 naa20 (ENSBSLG00000009801) #31 ENSBSLG00000009786 COL12A1 (ENSBSLG00000006994) cnksr3 (ENSBSLG00000006503) ENSBSLG00000006470 rps7 (ENSBSLG00000006365) rnaseh1 (ENSBSLG00000006311) myt1la (ENSBSLG00000005712) Climbing perch DUPLICATION Climbing perch MODERN SPECIES 3 ENSATEG00000006487 ENSATEG00000006508 CD109 (ENSATEG00000006516) COL12A1 (ENSATEG00000006531) TMEM30A (ENSATEG00000006791) FILIP1 (ENSATEG00000006819) ENSATEG00000006826 CLDN20 (ENSATEG00000006854) ENSATEG00000006862 ENSATEG00000007037 ENSATEG00000007048 mocs3 (ENSATEG00000007056) ENSATEG00000007100 foxa2 (ENSATEG00000007165) #20 pax1a (ENSATEG00000007213) #21 nkx2.2a (ENSATEG00000029056) #22 nkx2.4a (ENSATEG00000007237) #23 kiz (ENSATEG00000007262) #25 RALGAPA2 (ENSATEG00000007270) #27 insm1b (ENSATEG00000007309) #28 gale (ENSATEG00000007313) zbtb8a (ENSATEG00000007322) hmgcl (ENSATEG00000007334) gjb3 (ENSATEG00000027136) gjb10 (ENSATEG00000026891) ENSATEG00000007388 ppie (ENSATEG00000007395) pabpc4 (ENSATEG00000007402) tmem54a (ENSATEG00000030139) lck (ENSATEG00000007542) ENSATEG00000007491 Climbing perch MODERN SPECIES 15 NT5E (ENSATEG00000002145) mei4 (ENSATEG00000002126) HTR1B (ENSATEG00000002109) IMPG1 (ENSATEG00000001973) myo6a (ENSATEG00000001824) SENP6 (ENSATEG00000001795) FILIP1 (ENSATEG00000028309) TMEM30A (ENSATEG00000029827) COX7A2 (ENSATEG00000027276) PRKD3 (ENSATEG00000001636) NDUFAF7 (ENSATEG00000001621) CEBPZ (ENSATEG00000001538) CEBPZOS (ENSATEG00000029501) ENSATEG00000029894 #20 ENSATEG00000001430 #21 nkx2.2b (ENSATEG00000001390) #22 ENSATEG00000001285 #23 xrn2 (ENSATEG00000001273) #24 ENSATEG00000028183 INSM1 (ENSATEG00000001248) #28 CFAP61 (ENSATEG00000001144) #29 crnkl1 (ENSATEG00000001068) #30 naa20 (ENSATEG00000026382) #31 ENSATEG00000000953 ENSATEG00000000699 ENSATEG00000000692 ENSATEG00000000644 rps7 (ENSATEG00000027580) ENSATEG00000000598 myt1la (ENSATEG00000000509) ENSATEG00000000503 Carangaria ANCESTRAL SPECIES 10 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00440000039084.b ENSGT00530000063555.B ENSGT00940000158016.c.b ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 Carangaria_A ANCESTRAL SPECIES 4 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 129 COL12A1 (ENSLCAG00010014364) ENSLCAG00010014222 tmem30aa (ENSLCAG00010014217) FILIP1 (ENSLCAG00010014210) CLDN20 (ENSLCAG00010014207) tfb1m (ENSLCAG00010014202) TIAM2 (ENSLCAG00010014179) SCAF8 (ENSLCAG00010014168) ENSLCAG00010014162 ENSLCAG00010014151 QPCT (ENSLCAG00010014147) mocs3 (ENSLCAG00010014142) PRKD3 (ENSLCAG00010014065) foxa2 (ENSLCAG00010014049) #20 pax1a (ENSLCAG00010014046) #21 nkx2.2a (ENSLCAG00010014040) #22 kiz (ENSLCAG00010014032) #25 RALGAPA2 (ENSLCAG00010013140) #27 insm1b (ENSLCAG00010012966) #28 ENSLCAG00010012963 gale (ENSLCAG00010012959) zbtb8a (ENSLCAG00010012954) hmgcl (ENSLCAG00010012948) gjb3 (ENSLCAG00010012945) ENSLCAG00010012943 gjb10 (ENSLCAG00010012942) ENSLCAG00010012935 ppie (ENSLCAG00010012917) pabpc4 (ENSLCAG00010012881) ENSLCAG00010012863 tmem54a (ENSLCAG00010012861) Barramundi perch MODERN SPECIES 446 FOXA2 (ENSLCAG00010025007) #20 ENSLCAG00010025010 #21 nkx2.2b (ENSLCAG00010025013) #22 nkx2.4b (ENSLCAG00010025024) #23 xrn2 (ENSLCAG00010025068) #24 ENSLCAG00010025101 insm1a (ENSLCAG00010025104) #28 CFAP61 (ENSLCAG00010025109) #29 crnkl1 (ENSLCAG00010025130) #30 naa20 (ENSLCAG00010025154) #31 naa20 (ENSLCAG00010025168) #31 ENSLCAG00010025199 Seriola ANCESTRAL SPECIES 3 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.A ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT00940000176015 Yellowtail amberjack DUPLICATION Yellowtail amberjack MODERN SPECIES 2829 ENSSLDG00000011253 ENSSLDG00000011201 QPCT (ENSSLDG00000011183) mocs3 (ENSSLDG00000011155) PRKD3 (ENSSLDG00000011086) foxa2 (ENSSLDG00000011050) #20 pax1a (ENSSLDG00000011035) #21 nkx2.2a (ENSSLDG00000011018) #22 nkx2.4a (ENSSLDG00000011012) #23 kiz (ENSSLDG00000010987) #25 Yellowtail amberjack MODERN SPECIES 3234 rps7 (ENSSLDG00000020869) cnksr3 (ENSSLDG00000020911) ENSSLDG00000020943 ENSSLDG00000020955 ENSSLDG00000020979 ENSSLDG00000020996 PRKD3 (ENSSLDG00000021084) ndufaf7 (ENSSLDG00000021146) cebpz (ENSSLDG00000021173) CEBPZOS (ENSSLDG00000021230) FOXA2 (ENSSLDG00000021235) #20 ENSSLDG00000021238 #21 nkx2.2b (ENSSLDG00000021256) #22 NKX2-4 (ENSSLDG00000021261) #23 xrn2 (ENSSLDG00000021273) #24 ENSSLDG00000021355 insm1a (ENSSLDG00000021365) #28 ENSSLDG00000021373 #29 ENSSLDG00000021401 crnkl1 (ENSSLDG00000021413) #30 naa20 (ENSSLDG00000021480) #31 CD109 (ENSSLDG00000021491) COL12A1 (ENSSLDG00000021536) COX7A2 (ENSSLDG00000021623) tmem30ab (ENSSLDG00000021631) FILIP1 (ENSSLDG00000021653) SENP6 (ENSSLDG00000021665) myo6a (ENSSLDG00000021704) Greater amberjack DUPLICATION Greater amberjack MODERN SPECIES 62 COL12A1 (ENSSDUG00000011673) ENSSDUG00000011806 tmem30aa (ENSSDUG00000011837) FILIP1 (ENSSDUG00000011864) tfb1m (ENSSDUG00000011871) CLDN20 (ENSSDUG00000011891) TIAM2 (ENSSDUG00000011916) ENSSDUG00000012039 ENSSDUG00000012055 ENSSDUG00000012091 QPCT (ENSSDUG00000012108) mocs3 (ENSSDUG00000012114) PRKD3 (ENSSDUG00000012155) foxa2 (ENSSDUG00000012202) #20 pax1a (ENSSDUG00000012243) #21 nkx2.2a (ENSSDUG00000012256) #22 nkx2.4a (ENSSDUG00000012262) #23 kiz (ENSSDUG00000012270) #25 RALGAPA2 (ENSSDUG00000012299) #27 insm1b (ENSSDUG00000012455) #28 ENSSDUG00000012462 ENSSDUG00000012469 gale (ENSSDUG00000012480) zbtb8a (ENSSDUG00000012517) hmgcl (ENSSDUG00000012531) gjb3 (ENSSDUG00000012573) gjb10 (ENSSDUG00000012582) ppie (ENSSDUG00000012593) ENSSDUG00000012662 pabpc4 (ENSSDUG00000012683) ENSSDUG00000012758 Greater amberjack MODERN SPECIES 10 ENSSDUG00000013145 ENSSDUG00000013134 PRKD3 (ENSSDUG00000013089) ndufaf7 (ENSSDUG00000013053) ENSSDUG00000013045 cebpz (ENSSDUG00000013019) FOXA2 (ENSSDUG00000013011) #20 ENSSDUG00000012999 #21 nkx2.2b (ENSSDUG00000012989) #22 NKX2-4 (ENSSDUG00000012986) #23 xrn2 (ENSSDUG00000012802) #24 ENSSDUG00000012767 insm1a (ENSSDUG00000012757) #28 CFAP61 (ENSSDUG00000012661) #29 crnkl1 (ENSSDUG00000012625) #30 naa20 (ENSSDUG00000012606) #31 CD109 (ENSSDUG00000011943) COL12A1 (ENSSDUG00000011338) COX7A2 (ENSSDUG00000011255) tmem30ab (ENSSDUG00000011227) FILIP1 (ENSSDUG00000011210) SENP6 (ENSSDUG00000011187) myo6a (ENSSDUG00000011138) ENSSDUG00000011115 Pleuronectoidei ANCESTRAL SPECIES 5 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Tongue sole MODERN SPECIES qrsl1 (ENSCSEG00000000073) iars2 (ENSCSEG00000000072) rab3gap2 (ENSCSEG00000000071) kcnk5a (ENSCSEG00000000070) ENSCSEG00000000069 KCNK16 (ENSCSEG00000000068) kif6 (ENSCSEG00000000067) DAAM2 (ENSCSEG00000000066) PXDN (ENSCSEG00000000065) MYT1L (ENSCSEG00000000064) eipr1 (ENSCSEG00000000063) trappc12 (ENSCSEG00000000062) PRKD3 (ENSCSEG00000000061) foxa2 (ENSCSEG00000000060) #20 pax1a (ENSCSEG00000000059) #21 nkx2.2a (ENSCSEG00000000058) #22 nkx2.4a (ENSCSEG00000000057) #23 kiz (ENSCSEG00000000056) #25 RALGAPA2 (ENSCSEG00000000055) #27 insm1b (ENSCSEG00000000054) #28 gale (ENSCSEG00000000053) zbtb8a (ENSCSEG00000000052) hmgcl (ENSCSEG00000000051) gjb3 (ENSCSEG00000000050) gjb10 (ENSCSEG00000000049) ENSCSEG00000000048 ppie (ENSCSEG00000000047) mocs3 (ENSCSEG00000000046) QPCT (ENSCSEG00000000045) ENSCSEG00000000044 SCAF8 (ENSCSEG00000000043) Turbot MODERN SPECIES 8 ENSSMAG00000008083 ENSSMAG00000033714 CD109 (ENSSMAG00000025860) COL12A1 (ENSSMAG00000008109) TMEM30A (ENSSMAG00000008187) FILIP1 (ENSSMAG00000008210) ENSSMAG00000008229 CLDN20 (ENSSMAG00000008248) ENSSMAG00000008253 ENSSMAG00000008314 ENSSMAG00000008333 mocs3 (ENSSMAG00000008344) ENSSMAG00000008386 foxa2 (ENSSMAG00000008509) #20 pax1a (ENSSMAG00000008529) #21 nkx2.2a (ENSSMAG00000008547) #22 nkx2.4a (ENSSMAG00000008569) #23 kiz (ENSSMAG00000008585) #25 RALGAPA2 (ENSSMAG00000008648) #27 insm1b (ENSSMAG00000008697) #28 ENSSMAG00000008699 gale (ENSSMAG00000008893) zbtb8a (ENSSMAG00000008961) hmgcl (ENSSMAG00000008916) gjb3 (ENSSMAG00000008971) gjb10 (ENSSMAG00000008979) ppie (ENSSMAG00000008993) ENSSMAG00000029845 pabpc4 (ENSSMAG00000009007) ENSSMAG00000009053 tmem54a (ENSSMAG00000025641) Eupercaria ANCESTRAL SPECIES 9 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158016.c.b ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 Tetraodontidae ANCESTRAL SPECIES 3 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00940000178345 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT00390000004700.a.g ENSGT00940000154301.a.a Fugu MODERN SPECIES 11 ENSTRUG00000032429 CD109 (ENSTRUG00000010621) COL12A1 (ENSTRUG00000010103) tmem30aa (ENSTRUG00000009973) FILIP1 (ENSTRUG00000009907) tfb1m (ENSTRUG00000020334) CLDN20 (ENSTRUG00000009887) TIAM2 (ENSTRUG00000009550) ENSTRUG00000008852 QPCT (ENSTRUG00000008777) mocs3 (ENSTRUG00000008675) PRKD3 (ENSTRUG00000008225) foxa2 (ENSTRUG00000008187) #20 b9d2 (ENSTRUG00000020338) pax1a (ENSTRUG00000008079) #21 nkx2.2a (ENSTRUG00000007981) #22 nkx2.4a (ENSTRUG00000007924) #23 ENSTRUG00000019778 RALGAPA2 (ENSTRUG00000007162) #27 insm1b (ENSTRUG00000007119) #28 gale (ENSTRUG00000006832) zbtb8a (ENSTRUG00000006740) hmgcl (ENSTRUG00000006614) gjb3 (ENSTRUG00000006550) gjb10 (ENSTRUG00000021372) ENSTRUG00000021785 ppie (ENSTRUG00000006308) ENSTRUG00000031266 ENSTRUG00000025112 tmem54a (ENSTRUG00000005795) hdac1 (ENSTRUG00000005364) Tetraodon MODERN SPECIES 1 FBXO33 (ENSTNIG00000016877) CD109 (ENSTNIG00000016878) COL12A1 (ENSTNIG00000016879) tmem30aa (ENSTNIG00000016880) FILIP1 (ENSTNIG00000016881) tfb1m (ENSTNIG00000016882) CLDN20 (ENSTNIG00000016883) TIAM2 (ENSTNIG00000016884) SCAF8 (ENSTNIG00000016885) ENSTNIG00000016886 QPCT (ENSTNIG00000016887) mocs3 (ENSTNIG00000016888) PRKD3 (ENSTNIG00000016889) foxa2 (ENSTNIG00000016890) #20 pax1a (ENSTNIG00000016891) #21 nkx2.2a (ENSTNIG00000016892) #22 nkx2.4a (ENSTNIG00000016893) #23 RALGAPA2 (ENSTNIG00000016894) #27 RALGAPA2 (ENSTNIG00000016895) #27 insm1b (ENSTNIG00000000943) #28 gale (ENSTNIG00000016896) zbtb8a (ENSTNIG00000016897) hmgcl (ENSTNIG00000016898) gjb3 (ENSTNIG00000016899) gjb10 (ENSTNIG00000016900) ppie (ENSTNIG00000016901) pabpc4 (ENSTNIG00000016902) tmem54a (ENSTNIG00000016903) hdac1 (ENSTNIG00000016904) lck (ENSTNIG00000016905) FAM167B (ENSTNIG00000016906) Eupecaria_A ANCESTRAL SPECIES 10 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158016.c.b ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 Eupecaria_B ANCESTRAL SPECIES 11 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b Eupecaria_C ANCESTRAL SPECIES 8 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00940000154550.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Eupercaria_incertae_sedis ANCESTRAL SPECIES 16 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158016.c.b ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b European seabass MODERN SPECIES 2 ENSDLAG00005005337 COL12A1 (ENSDLAG00005001839) ENSDLAG00005026334 tmem30aa (ENSDLAG00005001673) CLDN20 (ENSDLAG00005032376) TFB1M (ENSDLAG00005001663) TIAM2 (ENSDLAG00005001609) SCAF8 (ENSDLAG00005001564) ENSDLAG00005001468 ENSDLAG00005001408 mocs3 (ENSDLAG00005001364) ENSDLAG00005001164 foxa2 (ENSDLAG00005001155) #20 ENSDLAG00005001153 pax1a (ENSDLAG00005001148) #21 nkx2.2a (ENSDLAG00005001143) #22 nkx2.4a (ENSDLAG00005031731) #23 kiz (ENSDLAG00005001133) #25 RALGAPA2 (ENSDLAG00005001088) #27 insm1b (ENSDLAG00005030667) #28 ENSDLAG00005001073 zbtb8a (ENSDLAG00005001044) ENSDLAG00005001026 ENSDLAG00005001016 gjb3 (ENSDLAG00005034335) ppie (ENSDLAG00005001000) pabpc4 (ENSDLAG00005000724) ENSDLAG00005000996 tmem54a (ENSDLAG00005034743) ENSDLAG00005000983 lck (ENSDLAG00005000846) Large yellow croaker MODERN SPECIES 495 ENSLCRG00005021171 ENSLCRG00005021175 COL12A1 (ENSLCRG00005021211) cox7a2a (ENSLCRG00005022539) tmem30aa (ENSLCRG00005022541) FILIP1 (ENSLCRG00005022543) tfb1m (ENSLCRG00005022544) CLDN20 (ENSLCRG00005022546) TIAM2 (ENSLCRG00005022547) ENSLCRG00005022552 ENSLCRG00005022577 mocs3 (ENSLCRG00005022580) PRKD3 (ENSLCRG00005022657) foxa2 (ENSLCRG00005022708) #20 pax1a (ENSLCRG00005022710) #21 nkx2.2a (ENSLCRG00005022711) #22 nkx2.4a (ENSLCRG00005022712) #23 kiz (ENSLCRG00005022714) #25 RALGAPA2 (ENSLCRG00005022728) #27 insm1b (ENSLCRG00005013607) #28 ENSLCRG00005013615 gale (ENSLCRG00005013621) zbtb8a (ENSLCRG00005013636) hmgcl (ENSLCRG00005013637) gjb3 (ENSLCRG00005013673) gjb10 (ENSLCRG00005013677) ppie (ENSLCRG00005013680) pabpc4 (ENSLCRG00005013721) ENSLCRG00005016175 tmem54a (ENSLCRG00005016176) hdac1 (ENSLCRG00005016179) Gilthead seabream DUPLICATION Gilthead seabream MODERN SPECIES 7 ENSSAUG00010021831 CD109 (ENSSAUG00010021833) COL12A1 (ENSSAUG00010021911) cox7a2a (ENSSAUG00010024392) tmem30aa (ENSSAUG00010024393) FILIP1 (ENSSAUG00010024394) tfb1m (ENSSAUG00010024409) CLDN20 (ENSSAUG00010024411) TIAM2 (ENSSAUG00010024417) ENSSAUG00010024433 QPCT (ENSSAUG00010024459) mocs3 (ENSSAUG00010024461) PRKD3 (ENSSAUG00010024521) foxa2 (ENSSAUG00010025118) #20 pax1a (ENSSAUG00010025120) #21 nkx2.2a (ENSSAUG00010025123) #22 nkx2.4a (ENSSAUG00010025125) #23 kiz (ENSSAUG00010025127) #25 RALGAPA2 (ENSSAUG00010025192) #27 insm1b (ENSSAUG00010026458) #28 ENSSAUG00010026459 gale (ENSSAUG00010026461) zbtb8a (ENSSAUG00010014575) hmgcl (ENSSAUG00010014578) gjb3 (ENSSAUG00010014744) ENSSAUG00010014746 GJB4 (ENSSAUG00010014748) ppie (ENSSAUG00010014751) pabpc4 (ENSSAUG00010014780) ENSSAUG00010015255 tmem54a (ENSSAUG00010015259) Gilthead seabream MODERN SPECIES 14 ENSSAUG00010019062 AIG1 (ENSSAUG00010019058) hivep2a (ENSSAUG00010019052) e2f6 (ENSSAUG00010019046) myt1la (ENSSAUG00010019018) rnaseh1 (ENSSAUG00010019013) rps7 (ENSSAUG00010019007) ENSSAUG00010019005 cnksr3 (ENSSAUG00010019004) PRKD3 (ENSSAUG00010018517) ndufaf7 (ENSSAUG00010018502) cebpz (ENSSAUG00010018499) CEBPZOS (ENSSAUG00010018497) FOXA2 (ENSSAUG00010018494) #20 ENSSAUG00010018493 #21 nkx2.2b (ENSSAUG00010018492) #22 NKX2-4 (ENSSAUG00010018491) #23 xrn2 (ENSSAUG00010014494) #24 ENSSAUG00010014388 insm1a (ENSSAUG00010014387) #28 CFAP61 (ENSSAUG00010014384) #29 crnkl1 (ENSSAUG00010014041) #30 naa20 (ENSSAUG00010014017) #31 CD109 (ENSSAUG00010014007) COL12A1 (ENSSAUG00010007916) COX7a2 (ENSSAUG00010007755) ENSSAUG00010007752 tmem30ab (ENSSAUG00010007746) FILIP1 (ENSSAUG00010007738) SENP6 (ENSSAUG00010007718) myo6a (ENSSAUG00010007667) Perciformes ANCESTRAL SPECIES 12 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b Cottioidei ANCESTRAL SPECIES 8 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000154788 ENSGT00390000004700.a.g ENSGT00940000154301.a.a ENSGT00940000159864 Stickleback MODERN SPECIES 15 COL12A1 (ENSGACG00000006800) tmem30aa (ENSGACG00000006856) FILIP1 (ENSGACG00000006881) tfb1m (ENSGACG00000006884) CLDN20 (ENSGACG00000006897) TIAM2 (ENSGACG00000006898) SCAF8 (ENSGACG00000006909) ENSGACG00000006922 ENSGACG00000006926 ENSGACG00000006931 ENSGACG00000006959 mocs3 (ENSGACG00000006965) PRKD3 (ENSGACG00000006980) foxa2 (ENSGACG00000006986) #20 pax1a (ENSGACG00000006987) #21 nkx2.2a (ENSGACG00000006996) #22 nkx2.4a (ENSGACG00000006999) #23 RALGAPA2 (ENSGACG00000007002) #27 insm1b (ENSGACG00000007014) #28 gale (ENSGACG00000007019) zbtb8a (ENSGACG00000007089) hmgcl (ENSGACG00000007098) gjb3 (ENSGACG00000007158) gjb10 (ENSGACG00000007159) ppie (ENSGACG00000007165) pabpc4 (ENSGACG00000007179) tmem54a (ENSGACG00000007211) hdac1 (ENSGACG00000007221) lck (ENSGACG00000007232) FAM167B (ENSGACG00000007241) zgc:154055 (ENSGACG00000007250) Lumpfish DUPLICATION Lumpfish MODERN SPECIES 14 ENSCLMG00005011346 CD109 (ENSCLMG00005011343) COL12A1 (ENSCLMG00005009808) tmem30aa (ENSCLMG00005009782) FILIP1 (ENSCLMG00005009778) CLDN20 (ENSCLMG00005009776) tfb1m (ENSCLMG00005009774) TIAM2 (ENSCLMG00005009547) ENSCLMG00005009530 ENSCLMG00005009488 ENSCLMG00005009483 mocs3 (ENSCLMG00005009482) PRKD3 (ENSCLMG00005009314) foxa2 (ENSCLMG00005009311) #20 pax1a (ENSCLMG00005009310) #21 nkx2.2a (ENSCLMG00005009309) #22 nkx2.4a (ENSCLMG00005009308) #23 kiz (ENSCLMG00005009307) #25 RALGAPA2 (ENSCLMG00005005705) #27 insm1b (ENSCLMG00005005653) #28 gale (ENSCLMG00005005597) zbtb8a (ENSCLMG00005005589) hmgcl (ENSCLMG00005005380) gjb3 (ENSCLMG00005005375) ENSCLMG00005005374 gjb10 (ENSCLMG00005005373) ENSCLMG00005005359 pabpc4 (ENSCLMG00005005342) tmem54a (ENSCLMG00005005339) HDAC1 (ENSCLMG00005005251) lck (ENSCLMG00005003434) Lumpfish MODERN SPECIES 16 ENSCLMG00005011214 ENSCLMG00005011217 ENSCLMG00005011221 myo6a (ENSCLMG00005011243) IMPG1 (ENSCLMG00005011265) HTR1B (ENSCLMG00005011266) NT5E (ENSCLMG00005011268) snx14 (ENSCLMG00005011301) syncrip (ENSCLMG00005011706) SYNCRIP (ENSCLMG00005011749) NDUFAF7 (ENSCLMG00005011750) CEBPZ (ENSCLMG00005011751) CEBPZOS (ENSCLMG00005011752) FOXA2 (ENSCLMG00005011753) #20 ENSCLMG00005011754 #21 nkx2.2b (ENSCLMG00005011755) #22 NKX2-4 (ENSCLMG00005011760) #23 xrn2 (ENSCLMG00005011775) #24 ENSCLMG00005011779 INSM1 (ENSCLMG00005011780) #28 ENSCLMG00005011781 #29 ENSCLMG00005011782 crnkl1 (ENSCLMG00005011783) #30 ENSCLMG00005011825 ENSCLMG00005011826 ENSCLMG00005011828 ENSCLMG00005011829 ENSCLMG00005011830 ENSCLMG00005011832 NDUFAF7 (ENSCLMG00005011833) ENSCLMG00005011839 Perciformes_a ANCESTRAL SPECIES 10 ENSGT00940000154923.C.w.a ENSGT00940000154923.C.w.b ENSGT00940000154550.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00530000063555.B ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Pike perch DUPLICATION Pike perch MODERN SPECIES 79 COL12A1 (ENSSLUG00000022571) cox7a2a (ENSSLUG00000023272) tmem30aa (ENSSLUG00000023276) FILIP1 (ENSSLUG00000023281) tfb1m (ENSSLUG00000023284) CLDN20 (ENSSLUG00000023289) TIAM2 (ENSSLUG00000023310) ENSSLUG00000023377 SCAF8 (ENSSLUG00000023390) ENSSLUG00000023408 QPCT (ENSSLUG00000023417) mocs3 (ENSSLUG00000023422) PRKD3 (ENSSLUG00000023493) foxa2 (ENSSLUG00000023917) #20 pax1a (ENSSLUG00000023923) #21 nkx2.2a (ENSSLUG00000023930) #22 nkx2.4a (ENSSLUG00000023932) #23 kiz (ENSSLUG00000023936) #25 RALGAPA2 (ENSSLUG00000024089) #27 insm1b (ENSSLUG00000024813) #28 ENSSLUG00000024817 gale (ENSSLUG00000024833) zbtb8a (ENSSLUG00000024846) hmgcl (ENSSLUG00000001580) gjb3 (ENSSLUG00000001645) gjb10 (ENSSLUG00000001650) ENSSLUG00000001656 ppie (ENSSLUG00000001705) pabpc4 (ENSSLUG00000001827) ENSSLUG00000001960 tmem54a (ENSSLUG00000001970) Pike perch MODERN SPECIES 95 ENSSLUG00000014956 PRKD3 (ENSSLUG00000014993) ndufaf7 (ENSSLUG00000015698) ENSSLUG00000015807 CEBPZ (ENSSLUG00000015814) ENSSLUG00000015821 ENSSLUG00000015829 FOXA2 (ENSSLUG00000015835) #20 ENSSLUG00000015842 #21 ENSSLUG00000015855 nkx2.2b (ENSSLUG00000015864) #22 NKX2-4 (ENSSLUG00000015878) #23 xrn2 (ENSSLUG00000015942) #24 ENSSLUG00000016070 insm1a (ENSSLUG00000016074) #28 CFAP61 (ENSSLUG00000016082) #29 crnkl1 (ENSSLUG00000016133) #30 naa20 (ENSSLUG00000016662) #31 ENSSLUG00000016671 COL12A1 (ENSSLUG00000016822) COX7A2 (ENSSLUG00000019375) ENSSLUG00000019377 TMEM30A (ENSSLUG00000019380) FILIP1 (ENSSLUG00000019387) SENP6 (ENSSLUG00000019389) myo6a (ENSSLUG00000019495) Channel bull blenny DUPLICATION Channel bull blenny MODERN SPECIES 14 ENSCGOG00000005198 ENSCGOG00000005199 COL12A1 (ENSCGOG00000005215) tmem30aa (ENSCGOG00000005574) cox7a2a (ENSCGOG00000005614) FILIP1 (ENSCGOG00000005625) tfb1m (ENSCGOG00000005636) CLDN20 (ENSCGOG00000005653) TIAM2 (ENSCGOG00000005656) ENSCGOG00000005732 QPCT (ENSCGOG00000005911) mocs3 (ENSCGOG00000005918) PRKD3 (ENSCGOG00000006014) foxa2 (ENSCGOG00000008112) #20 pax1a (ENSCGOG00000008126) #21 nkx2.2a (ENSCGOG00000008133) #22 nkx2.4a (ENSCGOG00000008140) #23 kiz (ENSCGOG00000008144) #25 RALGAPA2 (ENSCGOG00000008271) #27 insm1b (ENSCGOG00000012111) #28 kazald3 (ENSCGOG00000012114) gale (ENSCGOG00000012119) zbtb8a (ENSCGOG00000012222) hmgcl (ENSCGOG00000012225) gjb3 (ENSCGOG00000012285) gjb10 (ENSCGOG00000012291) ENSCGOG00000012312 pabpc4 (ENSCGOG00000012887) ENSCGOG00000016132 tmem54a (ENSCGOG00000016134) hdac1 (ENSCGOG00000016157) Channel bull blenny MODERN SPECIES 16 ENSCGOG00000020076 ENSCGOG00000019890 hivep2a (ENSCGOG00000019884) e2f6 (ENSCGOG00000019883) myt1la (ENSCGOG00000019873) rnaseh1 (ENSCGOG00000019866) rps7 (ENSCGOG00000019785) cnksr3 (ENSCGOG00000019779) ENSCGOG00000019778 PRKD3 (ENSCGOG00000018726) ndufaf7 (ENSCGOG00000018668) ENSCGOG00000018666 cebpz (ENSCGOG00000018658) FOXA2 (ENSCGOG00000018655) #20 ENSCGOG00000018651 #21 nkx2.2b (ENSCGOG00000018649) #22 NKX2-4 (ENSCGOG00000018647) #23 ENSCGOG00000018646 xrn2 (ENSCGOG00000017938) #24 ENSCGOG00000017907 ENSCGOG00000017906 ENSCGOG00000017905 ENSCGOG00000017901 #29 crnkl1 (ENSCGOG00000017743) #30 naa20 (ENSCGOG00000017899) #31 ENSCGOG00000017741 COX7A2 (ENSCGOG00000017642) tmem30aa (ENSCGOG00000017598) FILIP1 (ENSCGOG00000017596) ENSCGOG00000017594 SENP6 (ENSCGOG00000017588) Ballan wrasse DUPLICATION Ballan wrasse MODERN SPECIES 230 ENSLBEG00000012484 ENSLBEG00000012533 ENSLBEG00000012568 QPCT (ENSLBEG00000012610) mocs3 (ENSLBEG00000012656) PRKD3 (ENSLBEG00000012706) foxa2 (ENSLBEG00000012738) #20 pax1a (ENSLBEG00000012753) #21 nkx2.2a (ENSLBEG00000012780) #22 nkx2.4a (ENSLBEG00000012801) #23 kiz (ENSLBEG00000012815) #25 RALGAPA2 (ENSLBEG00000012960) #27 insm1b (ENSLBEG00000013352) #28 ENSLBEG00000013389 gale (ENSLBEG00000013424) zbtb8a (ENSLBEG00000013482) hmgcl (ENSLBEG00000013516) gjb3 (ENSLBEG00000013577) ENSLBEG00000013607 gjb10 (ENSLBEG00000013631) pabpc4 (ENSLBEG00000013654) tmem54a (ENSLBEG00000013676) hdac1 (ENSLBEG00000013698) ENSLBEG00000013734 Ballan wrasse MODERN SPECIES 639 PRKD3 (ENSLBEG00000023509) ndufaf7 (ENSLBEG00000023471) CEBPZ (ENSLBEG00000023442) ENSLBEG00000023426 CEBPZOS (ENSLBEG00000023413) ENSLBEG00000023402 ENSLBEG00000023393 #20 ENSLBEG00000023384 ENSLBEG00000023356 #21 nkx2.2b (ENSLBEG00000023321) #22 ENSLBEG00000023297 #23 nkx2.4b (ENSLBEG00000023280) #23 ENSLBEG00000023245 #24 Ovalentaria ANCESTRAL SPECIES 10 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b Ovalentaria_B ANCESTRAL SPECIES 18 ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00940000154550.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00940000161252.g ENSGT00950000183142.a.b.a.a ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000178139 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b Cichlidae ANCESTRAL SPECIES 23 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000178139 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Pseudocrenilabrinae ANCESTRAL SPECIES 8 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000178139 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Nile tilapia DUPLICATION Nile tilapia MODERN SPECIES 10 ENSONIG00000040904 ENSONIG00000028495 CD109 (ENSONIG00000008083) COL12A1 (ENSONIG00000008087) tmem30aa (ENSONIG00000008103) FILIP1 (ENSONIG00000008108) CLDN20 (ENSONIG00000028735) tfb1m (ENSONIG00000008109) TIAM2 (ENSONIG00000008111) ENSONIG00000008124 QPCT (ENSONIG00000008127) mocs3 (ENSONIG00000008129) PRKD3 (ENSONIG00000008132) foxa2 (ENSONIG00000008136) #20 pax1a (ENSONIG00000008137) #21 nkx2.2a (ENSONIG00000008139) #22 nkx2.4a (ENSONIG00000008140) #23 kiz (ENSONIG00000008141) #25 RALGAPA2 (ENSONIG00000008144) #27 insm1b (ENSONIG00000021063) #28 ENSONIG00000033636 gale (ENSONIG00000008151) zbtb8a (ENSONIG00000008155) hmgcl (ENSONIG00000008157) gjb10 (ENSONIG00000021065) ppie (ENSONIG00000008165) pabpc4 (ENSONIG00000008176) ENSONIG00000033287 tmem54a (ENSONIG00000032664) ENSONIG00000038778 hdac1 (ENSONIG00000008187) Nile tilapia MODERN SPECIES 6 ENSONIG00000037017 hivep2a (ENSONIG00000018691) e2f6 (ENSONIG00000018693) myt1la (ENSONIG00000018694) rnaseh1 (ENSONIG00000018697) rps7 (ENSONIG00000018698) ENSONIG00000032626 cnksr3 (ENSONIG00000018699) PRKD3 (ENSONIG00000018702) ndufaf7 (ENSONIG00000018707) cebpz (ENSONIG00000018713) CEBPZOS (ENSONIG00000042051) FOXA2 (ENSONIG00000018714) #20 ENSONIG00000029824 ENSONIG00000018717 #21 nkx2.2b (ENSONIG00000018719) #22 NKX2-4 (ENSONIG00000018724) #23 xrn2 (ENSONIG00000018720) #24 ENSONIG00000036395 insm1a (ENSONIG00000021258) #28 CFAP61 (ENSONIG00000018725) #29 crnkl1 (ENSONIG00000018728) #30 naa20 (ENSONIG00000018731) #31 COL12A1 (ENSONIG00000018733) ENSONIG00000018735 ENSONIG00000018739 ENSONIG00000034698 COX7A2 (ENSONIG00000018741) tmem30ab (ENSONIG00000018743) FILIP1 (ENSONIG00000018745) SENP6 (ENSONIG00000018746) Pseudocrenilabrinae_A ANCESTRAL SPECIES 6 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000178139 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Haplochromini ANCESTRAL SPECIES 7 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00940000161252.g ENSGT00950000183142.a.b.a.a ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000178139 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Burton s mouthbrooder DUPLICATION Burton s mouthbrooder MODERN SPECIES 317 ENSHBUG00000019149 ENSHBUG00000019170 COL12A1 (ENSHBUG00000019330) tmem30aa (ENSHBUG00000019349) FILIP1 (ENSHBUG00000019361) CLDN20 (ENSHBUG00000019376) tfb1m (ENSHBUG00000019396) TIAM2 (ENSHBUG00000019507) SCAF8 (ENSHBUG00000019537) ENSHBUG00000019552 QPCT (ENSHBUG00000019588) mocs3 (ENSHBUG00000019633) PRKD3 (ENSHBUG00000019719) foxa2 (ENSHBUG00000019726) #20 pax1a (ENSHBUG00000019749) #21 nkx2.2a (ENSHBUG00000000588) #22 nkx2.4a (ENSHBUG00000019786) #23 kiz (ENSHBUG00000019836) #25 RALGAPA2 (ENSHBUG00000020011) #27 insm1b (ENSHBUG00000020046) #28 ENSHBUG00000020070 gale (ENSHBUG00000020077) zbtb8a (ENSHBUG00000020088) gjb3 (ENSHBUG00000000791) hmgcl (ENSHBUG00000020109) gjb10 (ENSHBUG00000020130) ENSHBUG00000020145 ppie (ENSHBUG00000020159) pabpc4 (ENSHBUG00000020206) ENSHBUG00000020245 tmem54a (ENSHBUG00000020256) Burton s mouthbrooder MODERN SPECIES 381 AIG1 (ENSHBUG00000004448) hivep2a (ENSHBUG00000004475) e2f6 (ENSHBUG00000004495) myt1la (ENSHBUG00000004630) rnaseh1 (ENSHBUG00000004666) rps7 (ENSHBUG00000004713) ENSHBUG00000004724 cnksr3 (ENSHBUG00000004741) PRKD3 (ENSHBUG00000004832) ndufaf7 (ENSHBUG00000004893) cebpz (ENSHBUG00000004917) CEBPZOS (ENSHBUG00000004938) FOXA2 (ENSHBUG00000004947) #20 ENSHBUG00000004966 ENSHBUG00000004973 #21 nkx2.2b (ENSHBUG00000004988) #22 NKX2-4 (ENSHBUG00000004995) #23 xrn2 (ENSHBUG00000005077) #24 ENSHBUG00000005100 insm1a (ENSHBUG00000005119) #28 ENSHBUG00000005169 #29 ENSHBUG00000005182 naa20 (ENSHBUG00000005221) #31 crnkl1 (ENSHBUG00000005246) #30 COL12A1 (ENSHBUG00000005956) Haplochromini_A ANCESTRAL SPECIES 7 ENSGT00390000005606 ENSGT00650000094954 ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000178139 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Haplochromini_B ANCESTRAL SPECIES 37 ENSGT00390000005606 ENSGT00650000094954 ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000178139 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT00940000177142 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Eastern happy DUPLICATION Eastern happy MODERN SPECIES 10 COL12A1 (ENSACLG00000018490) tmem30aa (ENSACLG00000018648) FILIP1 (ENSACLG00000018678) tfb1m (ENSACLG00000018734) CLDN20 (ENSACLG00000018770) ENSACLG00000018778 TIAM2 (ENSACLG00000018785) SCAF8 (ENSACLG00000018828) ENSACLG00000018858 ENSACLG00000018878 QPCT (ENSACLG00000018916) mocs3 (ENSACLG00000018941) PRKD3 (ENSACLG00000019039) foxa2 (ENSACLG00000019103) #20 pax1a (ENSACLG00000019122) #21 nkx2.2a (ENSACLG00000019131) #22 kiz (ENSACLG00000019152) #25 nkx2.4a (ENSACLG00000019259) #23 RALGAPA2 (ENSACLG00000019282) #27 insm1b (ENSACLG00000019363) #28 ENSACLG00000019373 gale (ENSACLG00000019383) zbtb8a (ENSACLG00000019419) hmgcl (ENSACLG00000019441) gjb3 (ENSACLG00000019506) ppie (ENSACLG00000019518) ENSACLG00000019541 pabpc4 (ENSACLG00000019558) ENSACLG00000019619 tmem54a (ENSACLG00000019637) hdac1 (ENSACLG00000019646) Eastern happy MODERN SPECIES 6 HMBOX1 (ENSACLG00000009067) disp1 (ENSACLG00000009170) TLR5 (ENSACLG00000009202) ENSACLG00000009215 ENSACLG00000009234 ENSACLG00000009586 brox (ENSACLG00000009591) ENSACLG00000009620 ENSACLG00000009624 ENSACLG00000009628 ENSACLG00000009629 ENSACLG00000009633 cd2ap (ENSACLG00000010066) opn5 (ENSACLG00000010092) ENSACLG00000010450 #21 nkx2.2b (ENSACLG00000010492) #22 NKX2-4 (ENSACLG00000010500) #23 xrn2 (ENSACLG00000010522) #24 ENSACLG00000010669 insm1a (ENSACLG00000010686) #28 CFAP61 (ENSACLG00000010755) #29 crnkl1 (ENSACLG00000010813) #30 naa20 (ENSACLG00000010918) #31 COL12A1 (ENSACLG00000010948) ENSACLG00000011356 ENSACLG00000011511 ENSACLG00000011520 ENSACLG00000011551 ENSACLG00000011612 COX7A2 (ENSACLG00000011633) tmem30ab (ENSACLG00000011641) Zebra mbuna DUPLICATION Zebra mbuna MODERN SPECIES 1101 DLGAP2 (ENSMZEG00005005480) ENSMZEG00005005530 ENSMZEG00005005537 ENSMZEG00005005558 FILIP1 (ENSMZEG00005005616) tfb1m (ENSMZEG00005005640) CLDN20 (ENSMZEG00005005650) TIAM2 (ENSMZEG00005005664) SCAF8 (ENSMZEG00005005698) ENSMZEG00005005722 QPCT (ENSMZEG00005005761) mocs3 (ENSMZEG00005005779) PRKD3 (ENSMZEG00005005812) foxa2 (ENSMZEG00005005842) #20 pax1a (ENSMZEG00005005848) #21 nkx2.2a (ENSMZEG00005005857) #22 nkx2.4a (ENSMZEG00005005858) #23 kiz (ENSMZEG00005005869) #25 RALGAPA2 (ENSMZEG00005005902) #27 insm1b (ENSMZEG00005006037) #28 ENSMZEG00005006044 gale (ENSMZEG00005006051) zbtb8a (ENSMZEG00005006060) hmgcl (ENSMZEG00005006073) gjb3 (ENSMZEG00005006098) ENSMZEG00005006102 gjb10 (ENSMZEG00005006107) ppie (ENSMZEG00005006117) pabpc4 (ENSMZEG00005006141) ENSMZEG00005006191 tmem54a (ENSMZEG00005006199) Zebra mbuna MODERN SPECIES 3 nkx2.2b (ENSMZEG00005022371) #22 ENSMZEG00005022368 #21 NKX2-4 (ENSMZEG00005022367) #23 xrn2 (ENSMZEG00005022362) #24 ENSMZEG00005022358 insm1a (ENSMZEG00005022355) #28 CFAP61 (ENSMZEG00005022350) #29 crnkl1 (ENSMZEG00005022345) #30 naa20 (ENSMZEG00005022344) #31 ENSMZEG00005022304 ENSMZEG00005022288 ENSMZEG00005022283 ENSMZEG00005022280 ENSMZEG00005022277 ENSMZEG00005022274 tmem30ab (ENSMZEG00005022269) P. nyererei DUPLICATION P. nyererei MODERN SPECIES 383 ENSPNYG00000007587 COL12A1 (ENSPNYG00000007468) tmem30aa (ENSPNYG00000007410) FILIP1 (ENSPNYG00000007369) CLDN20 (ENSPNYG00000007358) tfb1m (ENSPNYG00000007330) TIAM2 (ENSPNYG00000007305) SCAF8 (ENSPNYG00000007277) ENSPNYG00000007241 ENSPNYG00000007190 QPCT (ENSPNYG00000007179) mocs3 (ENSPNYG00000007128) PRKD3 (ENSPNYG00000007056) foxa2 (ENSPNYG00000007035) #20 pax1a (ENSPNYG00000007017) #21 nkx2.2a (ENSPNYG00000006989) #22 nkx2.4a (ENSPNYG00000006980) #23 kiz (ENSPNYG00000006965) #25 RALGAPA2 (ENSPNYG00000006887) #27 insm1b (ENSPNYG00000006876) #28 ENSPNYG00000006870 gale (ENSPNYG00000006857) zbtb8a (ENSPNYG00000006845) gjb3 (ENSPNYG00000006836) hmgcl (ENSPNYG00000006821) gjb10 (ENSPNYG00000006809) ENSPNYG00000006795 ppie (ENSPNYG00000006336) pabpc4 (ENSPNYG00000006134) ENSPNYG00000006108 tmem54a (ENSPNYG00000006098) P. nyererei MODERN SPECIES 343 ENSPNYG00000001154 AIG1 (ENSPNYG00000001169) hivep2a (ENSPNYG00000001204) e2f6 (ENSPNYG00000001219) myt1la (ENSPNYG00000001234) rnaseh1 (ENSPNYG00000001292) rps7 (ENSPNYG00000001303) ENSPNYG00000001347 cnksr3 (ENSPNYG00000001359) PRKD3 (ENSPNYG00000001394) ndufaf7 (ENSPNYG00000001451) cebpz (ENSPNYG00000001483) CEBPZOS (ENSPNYG00000001546) FOXA2 (ENSPNYG00000001551) #20 ENSPNYG00000001573 #21 nkx2.2b (ENSPNYG00000001616) #22 nkx2.4b (ENSPNYG00000001669) #23 xrn2 (ENSPNYG00000001765) #24 ENSPNYG00000001923 ENSPNYG00000001931 ENSPNYG00000001963 crnkl1 (ENSPNYG00000001977) #30 naa20 (ENSPNYG00000002034) #31 COL12A1 (ENSPNYG00000002128) ENSPNYG00000002715 COX7A2 (ENSPNYG00000002783) tmem30ab (ENSPNYG00000002796) FILIP1 (ENSPNYG00000002825) ENSPNYG00000002830 ENSPNYG00000002844 myo6a (ENSPNYG00000002894) Lyretail cichlid DUPLICATION Lyretail cichlid MODERN SPECIES 363 ENSNBRG00000008647 COL12A1 (ENSNBRG00000008688) tmem30aa (ENSNBRG00000008833) FILIP1 (ENSNBRG00000008896) tfb1m (ENSNBRG00000009004) CLDN20 (ENSNBRG00000009031) ENSNBRG00000009047 SCAF8 (ENSNBRG00000009067) ENSNBRG00000009114 ENSNBRG00000009134 ENSNBRG00000009164 mocs3 (ENSNBRG00000009182) PRKD3 (ENSNBRG00000009213) foxa2 (ENSNBRG00000009271) #20 pax1a (ENSNBRG00000009280) #21 nkx2.2a (ENSNBRG00000009305) #22 nkx2.4a (ENSNBRG00000009322) #23 ENSNBRG00000009334 RALGAPA2 (ENSNBRG00000009364) #27 ENSNBRG00000009503 gale (ENSNBRG00000009542) zbtb8a (ENSNBRG00000009610) hmgcl (ENSNBRG00000009646) gjb3 (ENSNBRG00000009674) gjb10 (ENSNBRG00000009683) ENSNBRG00000009692 pabpc4 (ENSNBRG00000009708) tmem54a (ENSNBRG00000009726) hdac1 (ENSNBRG00000009739) lck (ENSNBRG00000009945) FAM167B (ENSNBRG00000010825) Lyretail cichlid MODERN SPECIES 318 ENSNBRG00000008959 AIG1 (ENSNBRG00000008933) hivep2a (ENSNBRG00000008887) e2f6 (ENSNBRG00000008835) myt1la (ENSNBRG00000008767) rnaseh1 (ENSNBRG00000008739) ENSNBRG00000008655 cnksr3 (ENSNBRG00000008617) PRKD3 (ENSNBRG00000008562) CEBPZOS (ENSNBRG00000008542) cebpz (ENSNBRG00000008466) FOXA2 (ENSNBRG00000008439) #20 ndufaf7 (ENSNBRG00000008402) ENSNBRG00000008377 ENSNBRG00000008357 nkx2.2b (ENSNBRG00000008315) #22 NKX2-4 (ENSNBRG00000008244) #23 xrn2 (ENSNBRG00000008062) #24 ENSNBRG00000008008 insm1a (ENSNBRG00000007998) #28 CFAP61 (ENSNBRG00000007937) #29 crnkl1 (ENSNBRG00000007867) #30 naa20 (ENSNBRG00000007829) #31 COL12A1 (ENSNBRG00000007056) ENSNBRG00000006887 ENSNBRG00000006868 COX7A2 (ENSNBRG00000006857) tmem30ab (ENSNBRG00000006845) FILIP1 (ENSNBRG00000006832) ENSNBRG00000006801 myo6a (ENSNBRG00000006708) Midas cichlid DUPLICATION Midas cichlid MODERN SPECIES 612 tfb1m (ENSACIG00000014290) CLDN20 (ENSACIG00000014306) TIAM2 (ENSACIG00000014314) ENSACIG00000014382 ENSACIG00000014394 ENSACIG00000014409 QPCT (ENSACIG00000014434) mocs3 (ENSACIG00000014453) PRKD3 (ENSACIG00000014609) foxa2 (ENSACIG00000014644) #20 pax1a (ENSACIG00000014691) #21 nkx2.2a (ENSACIG00000014702) #22 nkx2.4a (ENSACIG00000014713) #23 ENSACIG00000014728 ENSACIG00000014761 ENSACIG00000014777 ENSACIG00000014820 ENSACIG00000014840 ENSACIG00000014861 ENSACIG00000014871 ENSACIG00000014890 Midas cichlid MODERN SPECIES 275 PLEKHF1 (ENSACIG00000014594) e2f6 (ENSACIG00000014600) myt1la (ENSACIG00000014624) rnaseh1 (ENSACIG00000014666) rps7 (ENSACIG00000014684) cnksr3 (ENSACIG00000014733) PRKD3 (ENSACIG00000014766) ndufaf7 (ENSACIG00000014817) cebpz (ENSACIG00000014854) CEBPZOS (ENSACIG00000014887) FOXA2 (ENSACIG00000014897) #20 ENSACIG00000014913 ENSACIG00000014922 #21 nkx2.2b (ENSACIG00000014940) #22 NKX2-4 (ENSACIG00000014955) #23 xrn2 (ENSACIG00000015047) #24 ENSACIG00000015159 insm1a (ENSACIG00000015169) #28 CFAP61 (ENSACIG00000015182) #29 crnkl1 (ENSACIG00000015267) #30 naa20 (ENSACIG00000015305) #31 COL12A1 (ENSACIG00000015334) ENSACIG00000015466 Pomacentridae ANCESTRAL SPECIES 104 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000006395.b ENSGT00500000045333 ENSGT00940000155999.e.b #20 ENSGT00940000159137.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00940000177607 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000155724.r ENSGT00940000156078.d ENSGT00530000063503.a.b.g.a.e Pomacentridae_A ANCESTRAL SPECIES 102 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000006395.b ENSGT00500000045333 ENSGT00940000155999.e.b #20 ENSGT00940000159137.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00940000177607 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00940000154550.a ENSGT00390000004660.C.a.a.d ENSGT00950000182852.A.a.a.a ENSGT00940000155724.r ENSGT00940000156078.d Amphiprion ANCESTRAL SPECIES 202 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000006395.b ENSGT00500000045333 ENSGT00940000155999.e.b #20 ENSGT00940000159137.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.f #23 ENSGT00670000098098 #24 ENSGT00940000165336.a.a.a.h.a.a ENSGT00400000024959 ENSGT00940000162552.a.b #28 ENSGT00390000004987 #29 ENSGT00940000177607 ENSGT00550000074931 #30 ENSGT00550000075046 #31 ENSGT00940000155926.e ENSGT00940000154923.C.w.b Clown anemonefish DUPLICATION Clown anemonefish MODERN SPECIES 3021 nkx2.2a (ENSAOCG00000020599) #22 Clown anemonefish MODERN SPECIES 2231 ENSAOCG00000001689 #21 nkx2.2b (ENSAOCG00000023580) #22 nkx2.4b (ENSAOCG00000023613) #23 xrn2 (ENSAOCG00000023632) #24 Orange clownfish DUPLICATION Orange clownfish MODERN SPECIES 9 COL12A1 (ENSAPEG00000020479) cox7a2a (ENSAPEG00000020444) tmem30aa (ENSAPEG00000020430) FILIP1 (ENSAPEG00000020398) CLDN20 (ENSAPEG00000020390) tfb1m (ENSAPEG00000020359) TIAM2 (ENSAPEG00000020198) SCAF8 (ENSAPEG00000020115) ENSAPEG00000020081 ENSAPEG00000020042 QPCT (ENSAPEG00000020022) mocs3 (ENSAPEG00000019964) PRKD3 (ENSAPEG00000019899) foxa2 (ENSAPEG00000019885) #20 pax1a (ENSAPEG00000019868) #21 nkx2.2a (ENSAPEG00000019829) #22 nkx2.4a (ENSAPEG00000019740) #23 kiz (ENSAPEG00000019712) #25 RALGAPA2 (ENSAPEG00000019476) #27 insm1b (ENSAPEG00000019446) #28 ENSAPEG00000019415 gale (ENSAPEG00000019372) zbtb8a (ENSAPEG00000019360) hmgcl (ENSAPEG00000019313) gjb3 (ENSAPEG00000019299) ENSAPEG00000019286 gjb10 (ENSAPEG00000019268) ENSAPEG00000019262 ppie (ENSAPEG00000019253) pabpc4 (ENSAPEG00000019196) ENSAPEG00000019174 Orange clownfish MODERN SPECIES 2 pex3 (ENSAPEG00000014259) atf3 (ENSAPEG00000014306) ENSAPEG00000014363 nsl1 (ENSAPEG00000014389) tatdn3 (ENSAPEG00000014404) ENSAPEG00000014439 flvcr1 (ENSAPEG00000014446) ENSAPEG00000014492 cnksr3 (ENSAPEG00000014514) PRKD3 (ENSAPEG00000014535) ndufaf7 (ENSAPEG00000014630) cebpz (ENSAPEG00000014644) CEBPZOS (ENSAPEG00000014667) FOXA2 (ENSAPEG00000014681) #20 ENSAPEG00000014701 #21 nkx2.2b (ENSAPEG00000014723) #22 NKX2-4 (ENSAPEG00000014773) #23 xrn2 (ENSAPEG00000014871) #24 ENSAPEG00000014898 ENSAPEG00000014912 insm1a (ENSAPEG00000014929) #28 ENSAPEG00000014944 #29 ENSAPEG00000015033 crnkl1 (ENSAPEG00000015041) #30 naa20 (ENSAPEG00000015089) #31 CD109 (ENSAPEG00000015110) ENSAPEG00000015179 COL12A1 (ENSAPEG00000015211) COX7A2 (ENSAPEG00000015434) drc1 (ENSAPEG00000015459) OSTM1 (ENSAPEG00000015496) Spiny chromis DUPLICATION Spiny chromis MODERN SPECIES 132 QPCT (ENSAPOG00000001144) mocs3 (ENSAPOG00000001145) PRKD3 (ENSAPOG00000001146) foxa2 (ENSAPOG00000001147) #20 pax1a (ENSAPOG00000001148) #21 nkx2.2a (ENSAPOG00000001149) #22 nkx2.4a (ENSAPOG00000001150) #23 kiz (ENSAPOG00000001151) #25 RALGAPA2 (ENSAPOG00000001152) #27 insm1b (ENSAPOG00000001153) #28 ENSAPOG00000001154 gale (ENSAPOG00000001155) zbtb8a (ENSAPOG00000001156) hmgcl (ENSAPOG00000001157) gjb3 (ENSAPOG00000001158) gjb10 (ENSAPOG00000001159) ppie (ENSAPOG00000001160) pabpc4 (ENSAPOG00000001161) ENSAPOG00000001162 tmem54a (ENSAPOG00000001163) hdac1 (ENSAPOG00000001164) Spiny chromis MODERN SPECIES 202 ENSAPOG00000010271 ENSAPOG00000010242 cnksr3 (ENSAPOG00000010210) PRKD3 (ENSAPOG00000010147) ndufaf7 (ENSAPOG00000010062) cebpz (ENSAPOG00000010013) CEBPZOS (ENSAPOG00000009990) FOXA2 (ENSAPOG00000009962) #20 ENSAPOG00000009922 #21 nkx2.2b (ENSAPOG00000009832) #22 NKX2-4 (ENSAPOG00000009822) #23 xrn2 (ENSAPOG00000009818) #24 ENSAPOG00000009796 ENSAPOG00000009773 insm1a (ENSAPOG00000009758) #28 CFAP61 (ENSAPOG00000009739) #29 crnkl1 (ENSAPOG00000009705) #30 naa20 (ENSAPOG00000009624) #31 ENSAPOG00000009613 Bicolor damselfish DUPLICATION Bicolor damselfish MODERN SPECIES 587 pax1a (ENSSPAG00000008863) #21 nkx2.2a (ENSSPAG00000008873) #22 nkx2.4a (ENSSPAG00000008884) #23 kiz (ENSSPAG00000008957) #25 RALGAPA2 (ENSSPAG00000008998) #27 insm1b (ENSSPAG00000009093) #28 ENSSPAG00000009112 gale (ENSSPAG00000009122) zbtb8a (ENSSPAG00000009137) hmgcl (ENSSPAG00000009157) gjb3 (ENSSPAG00000009197) ENSSPAG00000009209 gjb10 (ENSSPAG00000009214) ppie (ENSSPAG00000009232) pabpc4 (ENSSPAG00000009252) ENSSPAG00000009311 tmem54a (ENSSPAG00000009346) Bicolor damselfish MODERN SPECIES 1001 ENSSPAG00000015903 #21 nkx2.2b (ENSSPAG00000015916) #22 nkx2.4b (ENSSPAG00000015963) #23 xrn2 (ENSSPAG00000016027) #24 ENSSPAG00000016078 insm1a (ENSSPAG00000016089) #28 ENSSPAG00000016100 #29 ENSSPAG00000016130 crnkl1 (ENSSPAG00000016150) #30 naa20 (ENSSPAG00000016196) #31 ENSSPAG00000016298 ENSSPAG00000017151 Atherinomorphae ANCESTRAL SPECIES 11 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b Oryzias ANCESTRAL SPECIES 3 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g Oryzias_a ANCESTRAL SPECIES 11 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g ENSGT00940000154301.a.a Chinese medaka DUPLICATION Chinese medaka MODERN SPECIES 1014 FILIP1 (ENSOSIG00000000825) tfb1m (ENSOSIG00000000831) CLDN20 (ENSOSIG00000000834) TIAM2 (ENSOSIG00000000889) SCAF8 (ENSOSIG00000000953) ENSOSIG00000000999 QPCT (ENSOSIG00000001030) mocs3 (ENSOSIG00000001037) PRKD3 (ENSOSIG00000001129) foxa2 (ENSOSIG00000006860) #20 pax1a (ENSOSIG00000006863) #21 nkx2.2a (ENSOSIG00000006865) #22 nkx2.4a (ENSOSIG00000006867) #23 ENSOSIG00000006869 RALGAPA2 (ENSOSIG00000006886) #27 insm1b (ENSOSIG00000006923) #28 gale (ENSOSIG00000006924) zbtb8a (ENSOSIG00000006925) hmgcl (ENSOSIG00000006926) gjb3 (ENSOSIG00000007060) gjb10 (ENSOSIG00000007063) ppie (ENSOSIG00000007070) ENSOSIG00000007158 pabpc4 (ENSOSIG00000007160) ENSOSIG00000007227 tmem54a (ENSOSIG00000007228) hdac1 (ENSOSIG00000007229) Chinese medaka MODERN SPECIES 369 ENSOSIG00000020828 hddc2 (ENSOSIG00000020824) nkain2 (ENSOSIG00000020822) ENSOSIG00000020820 ENSOSIG00000020813 ENSOSIG00000020696 ehd3 (ENSOSIG00000020661) stum (ENSOSIG00000020652) coq8aa (ENSOSIG00000018868) ENSOSIG00000018794 ENSOSIG00000018558 tmem200a (ENSOSIG00000018508) cebpz (ENSOSIG00000018501) CEBPZOS (ENSOSIG00000018492) FOXA2 (ENSOSIG00000018489) #20 nkx2.2b (ENSOSIG00000018486) #22 NKX2-4 (ENSOSIG00000018482) #23 xrn2 (ENSOSIG00000018416) #24 ENSOSIG00000018363 insm1a (ENSOSIG00000018359) #28 CFAP61 (ENSOSIG00000018357) #29 crnkl1 (ENSOSIG00000018263) #30 naa20 (ENSOSIG00000018250) #31 ENSOSIG00000018246 COL12A1 (ENSOSIG00000017204) ENSOSIG00000017174 HTR1B (ENSOSIG00000017168) ENSOSIG00000017164 ENSOSIG00000016097 Japanese Medaka HdrR DUPLICATION Japanese Medaka HdrR MODERN SPECIES 14 ENSORLG00000018223 COL12A1 (ENSORLG00000017312) tmem30aa (ENSORLG00000017322) FILIP1 (ENSORLG00000017325) tfb1m (ENSORLG00000017328) CLDN20 (ENSORLG00000017332) TIAM2 (ENSORLG00000017344) SCAF8 (ENSORLG00000017358) ENSORLG00000017379 ENSORLG00000028734 QPCT (ENSORLG00000017383) mocs3 (ENSORLG00000017388) PRKD3 (ENSORLG00000017403) foxa2 (ENSORLG00000017407) #20 pax1a (ENSORLG00000017412) #21 nkx2.2a (ENSORLG00000030199) #22 nkx2.4a (ENSORLG00000030534) #23 kiz (ENSORLG00000026138) #25 RALGAPA2 (ENSORLG00000017439) #27 insm1b (ENSORLG00000025283) #28 gale (ENSORLG00000017448) zbtb8a (ENSORLG00000017455) hmgcl (ENSORLG00000017461) gjb3 (ENSORLG00000017465) gjb10 (ENSORLG00000017468) ENSORLG00000017469 ENSORLG00000026657 pabpc4 (ENSORLG00000017479) ENSORLG00000017484 tmem54a (ENSORLG00000017487) HDAC1 (ENSORLG00000017491) Japanese Medaka HdrR MODERN SPECIES 16 nkain2 (ENSORLG00000029599) ENSORLG00000026510 ENSORLG00000030573 ENSORLG00000027151 med23 (ENSORLG00000017103) ENSORLG00000027910 ehd3 (ENSORLG00000017118) stum (ENSORLG00000022788) coq8aa (ENSORLG00000017137) ENSORLG00000017142 ENSORLG00000017159 tmem200a (ENSORLG00000017167) cebpz (ENSORLG00000017177) CEBPZOS (ENSORLG00000029671) ENSORLG00000030134 #20 nkx2.2b (ENSORLG00000017180) #22 ENSORLG00000017185 #23 xrn2 (ENSORLG00000017213) #24 ENSORLG00000017225 insm1a (ENSORLG00000023368) #28 CFAP61 (ENSORLG00000017228) #29 crnkl1 (ENSORLG00000017240) #30 naa20 (ENSORLG00000017247) #31 ENSORLG00000017259 ENSORLG00000017285 ENSORLG00000017291 HTR1B (ENSORLG00000017292) ENSORLG00000024567 IMPG1 (ENSORLG00000017297) myo6a (ENSORLG00000017306) ENSORLG00000017309 Oryzias_b ANCESTRAL SPECIES 12 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000165717 ENSGT00940000177851 ENSGT00940000158790 ENSGT00940000154788 Javanese ricefish DUPLICATION Javanese ricefish MODERN SPECIES 14 ENSOJAG00000015192 tmem30aa (ENSOJAG00000022528) ENSOJAG00000022525 FILIP1 (ENSOJAG00000022521) CLDN20 (ENSOJAG00000022517) tfb1m (ENSOJAG00000022508) TIAM2 (ENSOJAG00000022443) SCAF8 (ENSOJAG00000022403) ENSOJAG00000022383 ENSOJAG00000022320 QPCT (ENSOJAG00000022297) mocs3 (ENSOJAG00000022259) PRKD3 (ENSOJAG00000022128) foxa2 (ENSOJAG00000022104) #20 pax1a (ENSOJAG00000022096) #21 nkx2.2a (ENSOJAG00000022089) #22 nkx2.4a (ENSOJAG00000022085) #23 kiz (ENSOJAG00000022074) #25 RALGAPA2 (ENSOJAG00000021869) #27 insm1b (ENSOJAG00000021792) #28 gale (ENSOJAG00000021729) zbtb8a (ENSOJAG00000021774) hmgcl (ENSOJAG00000021599) gjb3 (ENSOJAG00000021582) ENSOJAG00000021576 gjb10 (ENSOJAG00000021563) ENSOJAG00000021542 pabpc4 (ENSOJAG00000021431) ENSOJAG00000021408 tmem54a (ENSOJAG00000021405) ENSOJAG00000021398 Javanese ricefish MODERN SPECIES 16 ENSOJAG00000019024 med23 (ENSOJAG00000018898) ehd3 (ENSOJAG00000018805) ENSOJAG00000018759 ENSOJAG00000018741 ENSOJAG00000018716 stum (ENSOJAG00000018702) ENSOJAG00000018675 coq8aa (ENSOJAG00000017297) ENSOJAG00000017137 ENSOJAG00000016994 tmem200a (ENSOJAG00000016968) cebpz (ENSOJAG00000016955) CEBPZOS (ENSOJAG00000016941) FOXA2 (ENSOJAG00000016933) #20 nkx2.2b (ENSOJAG00000016925) #22 NKX2-4 (ENSOJAG00000016916) #23 xrn2 (ENSOJAG00000016674) #24 ENSOJAG00000016640 insm1a (ENSOJAG00000016620) #28 CFAP61 (ENSOJAG00000016601) #29 crnkl1 (ENSOJAG00000016515) #30 naa20 (ENSOJAG00000016456) #31 ENSOJAG00000016436 ENSOJAG00000016389 COL12A1 (ENSOJAG00000013844) mei4 (ENSOJAG00000013636) HTR1B (ENSOJAG00000013616) ENSOJAG00000013566 myo6a (ENSOJAG00000013278) SENP6 (ENSOJAG00000013200) Indian medaka DUPLICATION Indian medaka MODERN SPECIES ENSOMEG00000015783 tmem30aa (ENSOMEG00000015705) ENSOMEG00000015676 FILIP1 (ENSOMEG00000015660) tfb1m (ENSOMEG00000015641) CLDN20 (ENSOMEG00000015609) TIAM2 (ENSOMEG00000015581) SCAF8 (ENSOMEG00000015471) ENSOMEG00000015417 ENSOMEG00000015362 QPCT (ENSOMEG00000000392) mocs3 (ENSOMEG00000015265) PRKD3 (ENSOMEG00000015226) foxa2 (ENSOMEG00000015170) #20 pax1a (ENSOMEG00000015166) #21 nkx2.2a (ENSOMEG00000015121) #22 nkx2.4a (ENSOMEG00000015095) #23 kiz (ENSOMEG00000015089) #25 RALGAPA2 (ENSOMEG00000015017) #27 insm1b (ENSOMEG00000014646) #28 gale (ENSOMEG00000014626) zbtb8a (ENSOMEG00000000759) hmgcl (ENSOMEG00000014557) gjb3 (ENSOMEG00000014532) ENSOMEG00000014524 gjb10 (ENSOMEG00000000833) ENSOMEG00000014507 ENSOMEG00000014468 ppie (ENSOMEG00000014458) pabpc4 (ENSOMEG00000014410) ENSOMEG00000014336 Indian medaka MODERN SPECIES 22 ENSOMEG00000019253 ehd3 (ENSOMEG00000000506) ENSOMEG00000019287 ENSOMEG00000019302 ENSOMEG00000000508 stum (ENSOMEG00000019326) ENSOMEG00000019335 coq8aa (ENSOMEG00000019391) ENSOMEG00000019426 ENSOMEG00000019629 ENSOMEG00000019658 tmem200a (ENSOMEG00000019668) cebpz (ENSOMEG00000019691) CEBPZOS (ENSOMEG00000019698) FOXA2 (ENSOMEG00000019706) #20 nkx2.2b (ENSOMEG00000019717) #22 NKX2-4 (ENSOMEG00000019726) #23 xrn2 (ENSOMEG00000019820) #24 insm1a (ENSOMEG00000019839) #28 ENSOMEG00000019855 #29 crnkl1 (ENSOMEG00000019895) #30 naa20 (ENSOMEG00000019922) #31 ENSOMEG00000020110 COL12A1 (ENSOMEG00000020394) mei4 (ENSOMEG00000020504) HTR1B (ENSOMEG00000020510) myo6a (ENSOMEG00000020564) SENP6 (ENSOMEG00000020664) tmed10 (ENSOMEG00000020712) fosab (ENSOMEG00000020744) ENSOMEG00000020753 Cyprinodontiformes ANCESTRAL SPECIES 23 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b Aplocheiloidei ANCESTRAL SPECIES 61 ENSGT00940000166262 ENSGT00390000004923.A.c.b ENSGT00730000113981 ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g ENSGT00940000154301.a.a ENSGT00940000159864 Mangrove rivulus MODERN SPECIES 1 FNDC5 (ENSKMAG00000012600) ENSKMAG00000012623 tmem30aa (ENSKMAG00000012635) FILIP1 (ENSKMAG00000012661) tfb1m (ENSKMAG00000012667) CLDN20 (ENSKMAG00000012730) TIAM2 (ENSKMAG00000012737) SCAF8 (ENSKMAG00000012767) ENSKMAG00000012810 QPCT (ENSKMAG00000012848) mocs3 (ENSKMAG00000012869) PRKD3 (ENSKMAG00000012919) foxa2 (ENSKMAG00000012991) #20 pax1a (ENSKMAG00000013005) #21 nkx2.2a (ENSKMAG00000013035) #22 nkx2.4a (ENSKMAG00000013056) #23 kiz (ENSKMAG00000013075) #25 RALGAPA2 (ENSKMAG00000013155) #27 insm1b (ENSKMAG00000013434) #28 gale (ENSKMAG00000013456) zbtb8a (ENSKMAG00000013481) hmgcl (ENSKMAG00000013499) gjb3 (ENSKMAG00000013536) gjb10 (ENSKMAG00000013543) ppie (ENSKMAG00000013555) pabpc4 (ENSKMAG00000013597) ENSKMAG00000013640 tmem54a (ENSKMAG00000013667) hdac1 (ENSKMAG00000013680) lck (ENSKMAG00000013725) Turquoise killifish MODERN SPECIES 1625 ankk1 (ENSNFUG00015022634) FNDC5 (ENSNFUG00015022632) TMEM30AA (ENSNFUG00015022624) FILIP1 (ENSNFUG00015022621) CU695076.1 (ENSNFUG00015022618) tfb1m (ENSNFUG00015022616) TIAM2 (ENSNFUG00015022606) ENSNFUG00015022597 SCAF8 (ENSNFUG00015022586) ENSNFUG00015022577 QPCT (ENSNFUG00015022574) MOCS3 (ENSNFUG00015022562) PRKD3 (ENSNFUG00015022550) foxa2 (ENSNFUG00015022548) #20 pax1a (ENSNFUG00015022542) #21 nkx2.2a (ENSNFUG00015022541) #22 nkx2.4a (ENSNFUG00015022536) #23 ENSNFUG00015022533 RALGAPA2 (ENSNFUG00015018649) #27 gale (ENSNFUG00015018511) zbtb8a (ENSNFUG00015018508) gjb3 (ENSNFUG00015018507) gjb10 (ENSNFUG00015018505) HMGCL (ENSNFUG00015018462) ppie (ENSNFUG00015018437) pabpc4 (ENSNFUG00015018284) hdac1 (ENSNFUG00015017673) tmem54a (ENSNFUG00015017640) lck (ENSNFUG00015015524) FAM167B (ENSNFUG00015015405) Nfu_g_1_015102 (ENSNFUG00015015246) Cyprinodontoidei ANCESTRAL SPECIES 8 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b Poeciliinae ANCESTRAL SPECIES 8 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT00390000004700.a.g Poecilia ANCESTRAL SPECIES 10 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00940000161252.g ENSGT00950000183142.a.b.a.a ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01020000230683 ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000177142 ENSGT00940000158790 ENSGT00940000177851 ENSGT00940000154788 ENSGT00390000004700.a.g NAME_6 ANCESTRAL SPECIES 6 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00940000161252.g ENSGT00950000183142.a.b.a.a ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000154788 ENSGT00390000004700.a.g ENSGT00940000154301.a.a ENSGT00940000159864 ENSGT00940000159693 Amazon molly MODERN SPECIES 282 ENSPFOG00000006262 CD109 (ENSPFOG00000006064) COL12A1 (ENSPFOG00000005480) tmem30aa (ENSPFOG00000005366) FILIP1 (ENSPFOG00000005319) CLDN20 (ENSPFOG00000005290) tfb1m (ENSPFOG00000005139) TIAM2 (ENSPFOG00000004503) SCAF8 (ENSPFOG00000004176) ENSPFOG00000003734 QPCT (ENSPFOG00000003621) mocs3 (ENSPFOG00000003545) PRKD3 (ENSPFOG00000003286) foxa2 (ENSPFOG00000003245) #20 pax1a (ENSPFOG00000003208) #21 nkx2.2a (ENSPFOG00000003195) #22 Sailfin molly MODERN SPECIES 311 mocs3 (ENSPLAG00000018495) PRKD3 (ENSPLAG00000018548) foxa2 (ENSPLAG00000018598) #20 pax1a (ENSPLAG00000018609) #21 nkx2.2a (ENSPLAG00000018622) #22 nkx2.4a (ENSPLAG00000018637) #23 kiz (ENSPLAG00000018652) #25 Guppy MODERN SPECIES 453 CD109 (ENSPREG00000022265) COL12A1 (ENSPREG00000022311) tmem30aa (ENSPREG00000022376) FILIP1 (ENSPREG00000022381) tfb1m (ENSPREG00000022392) CLDN20 (ENSPREG00000000627) TIAM2 (ENSPREG00000000631) SCAF8 (ENSPREG00000000652) ENSPREG00000000660 ENSPREG00000000704 QPCT (ENSPREG00000000716) mocs3 (ENSPREG00000000725) PRKD3 (ENSPREG00000000787) foxa2 (ENSPREG00000000922) #20 pax1a (ENSPREG00000000940) #21 nkx2.2a (ENSPREG00000000967) #22 nkx2.4a (ENSPREG00000000985) #23 kiz (ENSPREG00000001000) #25 RALGAPA2 (ENSPREG00000001038) #27 insm1b (ENSPREG00000001222) #28 gale (ENSPREG00000001274) zbtb8a (ENSPREG00000001445) hmgcl (ENSPREG00000001458) gjb3 (ENSPREG00000001495) ENSPREG00000001510 gjb10 (ENSPREG00000001523) ENSPREG00000001537 ppie (ENSPREG00000001551) ENSPREG00000001564 pabpc4 (ENSPREG00000001589) tmem54a (ENSPREG00000001676) Platyfish MODERN SPECIES 10 ENSXMAG00000022572 CD109 (ENSXMAG00000000279) COL12A1 (ENSXMAG00000000284) tmem30aa (ENSXMAG00000024486) FILIP1 (ENSXMAG00000019227) tfb1m (ENSXMAG00000019222) CLDN20 (ENSXMAG00000019991) TIAM2 (ENSXMAG00000019210) SCAF8 (ENSXMAG00000019192) ENSXMAG00000019164 QPCT (ENSXMAG00000019155) mocs3 (ENSXMAG00000019148) PRKD3 (ENSXMAG00000019117) foxa2 (ENSXMAG00000016270) #20 pax1a (ENSXMAG00000019114) #21 nkx2.2a (ENSXMAG00000019112) #22 nkx2.4a (ENSXMAG00000025237) #23 kiz (ENSXMAG00000019103) #25 RALGAPA2 (ENSXMAG00000019065) #27 insm1b (ENSXMAG00000021798) #28 gale (ENSXMAG00000019056) zbtb8a (ENSXMAG00000019052) hmgcl (ENSXMAG00000019047) gjb3 (ENSXMAG00000019989) gjb10 (ENSXMAG00000019988) ENSXMAG00000029913 ppie (ENSXMAG00000019027) ENSXMAG00000025562 pabpc4 (ENSXMAG00000019007) tmem54a (ENSXMAG00000019004) hdac1 (ENSXMAG00000025106) NAME_4 ANCESTRAL SPECIES 56 ENSGT00940000153592.A.b ENSGT00940000155926.f ENSGT00940000154923.C.w.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b ENSGT00940000163429.D ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00940000158000 ENSGT00940000157491 ENSGT00940000158484 ENSGT01030000234513.A.a.a.a.a.e ENSGT01030000234513.A.a.a.a.b.c.b ENSGT00940000158790 ENSGT00940000154788 ENSGT01030000234567.A.a.a.a.b ENSGT00390000004700.a.g ENSGT00940000154301.a.a ENSGT00940000159864 Mummichog MODERN SPECIES 2192 CD109 (ENSFHEG00000008928) COL12A1 (ENSFHEG00000008851) tmem30aa (ENSFHEG00000008662) FILIP1 (ENSFHEG00000008426) tfb1m (ENSFHEG00000008407) CLDN20 (ENSFHEG00000008360) TIAM2 (ENSFHEG00000008345) SCAF8 (ENSFHEG00000008284) ENSFHEG00000008266 ENSFHEG00000008253 QPCT (ENSFHEG00000008214) mocs3 (ENSFHEG00000008207) PRKD3 (ENSFHEG00000008174) foxa2 (ENSFHEG00000008126) #20 pax1a (ENSFHEG00000008122) #21 nkx2.2a (ENSFHEG00000008113) #22 nkx2.4a (ENSFHEG00000008097) #23 kiz (ENSFHEG00000008090) #25 RALGAPA2 (ENSFHEG00000008059) #27 insm1b (ENSFHEG00000007831) #28 gale (ENSFHEG00000007808) zbtb8a (ENSFHEG00000007755) hmgcl (ENSFHEG00000007740) gjb3 (ENSFHEG00000007587) gjb10 (ENSFHEG00000007578) ppie (ENSFHEG00000007560) pabpc4 (ENSFHEG00000007548) ENSFHEG00000007478 tmem54a (ENSFHEG00000007474) hdac1 (ENSFHEG00000007464) lck (ENSFHEG00000000605) Sheepshead minnow MODERN SPECIES 139 ENSCVAG00000009379 COL12A1 (ENSCVAG00000009365) tmem30aa (ENSCVAG00000009229) FILIP1 (ENSCVAG00000009209) tfb1m (ENSCVAG00000009201) CLDN20 (ENSCVAG00000009188) ENSCVAG00000009183 TIAM2 (ENSCVAG00000009168) SCAF8 (ENSCVAG00000000925) ENSCVAG00000009135 QPCT (ENSCVAG00000009095) mocs3 (ENSCVAG00000009073) PRKD3 (ENSCVAG00000009028) foxa2 (ENSCVAG00000008975) #20 pax1a (ENSCVAG00000008970) #21 nkx2.2a (ENSCVAG00000008954) #22 nkx2.4a (ENSCVAG00000008946) #23 kiz (ENSCVAG00000008940) #25 RALGAPA2 (ENSCVAG00000008911) #27 insm1b (ENSCVAG00000008787) #28 gale (ENSCVAG00000008774) zbtb8a (ENSCVAG00000008746) hmgcl (ENSCVAG00000008738) gjb3 (ENSCVAG00000008697) Cod DUPLICATION Cod MODERN SPECIES 18 ARHGEF10 (ENSGMOG00000024574) KBTBD11 (ENSGMOG00000020212) ENSGMOG00000003016 ENSGMOG00000026355 ENSGMOG00000012042 ENSGMOG00000029386 ENSGMOG00000018738 CLDN20 (ENSGMOG00000000892) ENSGMOG00000018751 ENSGMOG00000018863 ENSGMOG00000018878 mocs3 (ENSGMOG00000018881) ENSGMOG00000018890 foxa2 (ENSGMOG00000022199) #20 pax1a (ENSGMOG00000018913) #21 nkx2.2a (ENSGMOG00000034299) #22 nkx2.4a (ENSGMOG00000026009) #23 kiz (ENSGMOG00000031592) #25 RALGAPA2 (ENSGMOG00000018931) #27 insm1b (ENSGMOG00000026221) #28 ENSGMOG00000030444 gale (ENSGMOG00000018970) zbtb8a (ENSGMOG00000033971) hmgcl (ENSGMOG00000018997) gjb3 (ENSGMOG00000020298) gjb10 (ENSGMOG00000032026) ENSGMOG00000020255 ppie (ENSGMOG00000019015) pabpc4 (ENSGMOG00000019025) ENSGMOG00000019041 tmem54a (ENSGMOG00000019050) Cod MODERN SPECIES 13 ENSGMOG00000023896 ENSGMOG00000036657 cd2ap (ENSGMOG00000024087) opn5 (ENSGMOG00000019551) ptchd4 (ENSGMOG00000009077) ENSGMOG00000026269 ENSGMOG00000035495 ENSGMOG00000016869 ENSGMOG00000006163 ENSGMOG00000037260 ENSGMOG00000017910 ENSGMOG00000017880 ENSGMOG00000017871 ENSGMOG00000017852 #20 ENSGMOG00000033928 #21 nkx2.2b (ENSGMOG00000028363) #22 ENSGMOG00000013424 #23 xrn2 (ENSGMOG00000013436) #24 INSM1 (ENSGMOG00000031294) #28 CFAP61 (ENSGMOG00000008811) #29 crnkl1 (ENSGMOG00000007609) #30 naa20 (ENSGMOG00000016881) #31 CD109 (ENSGMOG00000022502) COL12A1 (ENSGMOG00000010546) COX7A2 (ENSGMOG00000010543) TMEM30A (ENSGMOG00000010538) ENSGMOG00000033274 ENSGMOG00000024927 ENSGMOG00000001624 ENSGMOG00000035581 ENSGMOG00000029543 Osteoglossiformes ANCESTRAL SPECIES 161 ENSGT00940000157612 ENSGT00940000155982.e.a ENSGT00940000156483.h.a ENSGT00940000155634.q.a ENSGT00940000160501 ENSGT00950000183142.a.b.a.a ENSGT00940000161252.g ENSGT00940000157012.k ENSGT00530000063946.b.e ENSGT00940000163429.D.gc ENSGT00390000003107.a ENSGT00940000160847 ENSGT00950000183024.a.a.b.q ENSGT00940000155999.e.a #20 ENSGT00940000159137.b.a #21 ENSGT00940000159727 #22 ENSGT00940000162247.e #23 ENSGT00390000010121 #25 ENSGT00950000183139.A #27 ENSGT00940000162552.a.a #28 ENSGT00550000075046 #31 ENSGT00940000154923.C.w.a ENSGT00940000154550.a.ac.a ENSGT00390000004660.C.a.a.c ENSGT00950000182852.A.a.a.b ENSGT00390000008195 ENSGT00390000002448 ENSGT00730000111137 ENSGT00940000155671.y.a ENSGT00940000157666 ENSGT01030000234667.b.e P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 120 ywhaqb (ENSPKIG00000019763) grhl1 (ENSPKIG00000019803) ZDHHC14 (ENSPKIG00000019881) ARID1B (ENSPKIG00000019932) NOX3 (ENSPKIG00000020313) tfb1m (ENSPKIG00000021117) CLDN20 (ENSPKIG00000021154) TIAM2 (ENSPKIG00000021169) SCAF8 (ENSPKIG00000021212) ENSPKIG00000021250 QPCT (ENSPKIG00000021290) mocs3 (ENSPKIG00000021324) PRKD3 (ENSPKIG00000021379) foxa2 (ENSPKIG00000021452) #20 pax1a (ENSPKIG00000021462) #21 nkx2.2a (ENSPKIG00000021491) #22 nkx2.4a (ENSPKIG00000021504) #23 kiz (ENSPKIG00000021533) #25 RALGAPA2 (ENSPKIG00000021592) #27 insm1b (ENSPKIG00000021638) #28 naa20 (ENSPKIG00000021653) #31 ENSPKIG00000021684 cox7a2a (ENSPKIG00000021810) tmem30aa (ENSPKIG00000021767) FILIP1 (ENSPKIG00000021829) adi1 (ENSPKIG00000021850) trappc12 (ENSPKIG00000021863) eipr1 (ENSPKIG00000021880) MYT1L (ENSPKIG00000021918) PXDN (ENSPKIG00000022017) CCR6 (ENSPKIG00000022108) P. kingsleyae MODERN SPECIES 373 FOXA2 (ENSPKIG00000016753) #20 ENSPKIG00000016769 ENSPKIG00000016784 PAX1 (ENSPKIG00000016833) #21 nkx2.2a (ENSPKIG00000016859) #22 xrn2 (ENSPKIG00000016889) #24 NKX2-4 (ENSPKIG00000016983) #23 ENSPKIG00000016993 insm1a (ENSPKIG00000017014) #28 CFAP61 (ENSPKIG00000017034) #29 crnkl1 (ENSPKIG00000017093) #30 ENSPKIG00000017117 ENSPKIG00000017131 Asian bonytongue DUPLICATION Asian bonytongue MODERN SPECIES 6 grhl1 (ENSSFOG00015009961) klf11b (ENSSFOG00015009926) ZDHHC14 (ENSSFOG00015009868) ARID1B (ENSSFOG00015009783) CLDN20 (ENSSFOG00015024629) tfb1m (ENSSFOG00015009739) TIAM2 (ENSSFOG00015009593) SCAF8 (ENSSFOG00015009481) ENSSFOG00015009395 QPCT (ENSSFOG00015009365) mocs3 (ENSSFOG00015009346) PRKD3 (ENSSFOG00015009297) foxa2 (ENSSFOG00015025782) #20 ENSSFOG00015024589 pax1a (ENSSFOG00015009264) #21 nkx2.2a (ENSSFOG00015027933) #22 NKX2-4 (ENSSFOG00015024864) #23 kiz (ENSSFOG00015009174) #25 RALGAPA2 (ENSSFOG00015009082) #27 insm1b (ENSSFOG00015033077) #28 naa20 (ENSSFOG00015008947) #31 COL12A1 (ENSSFOG00015008714) COX7A2 (ENSSFOG00015029011) tmem30aa (ENSSFOG00015008613) FILIP1 (ENSSFOG00015008588) adi1 (ENSSFOG00015008566) trappc12 (ENSSFOG00015008502) eipr1 (ENSSFOG00015008460) MYT1L (ENSSFOG00015008309) PXDN (ENSSFOG00015008197) CCR6 (ENSSFOG00015008181) Asian bonytongue MODERN SPECIES rrm2 (ENSSFOG00015001895) LGALS8 (ENSSFOG00015001836) zdhhc14 (ENSSFOG00015001736) TMEM242 (ENSSFOG00015033036) arid1b (ENSSFOG00015001640) CLDN20 (ENSSFOG00015001626) TIAM2 (ENSSFOG00015001613) ENSSFOG00015001607 ENSSFOG00015001543 PRKD3 (ENSSFOG00015001426) ndufaf7 (ENSSFOG00015001363) cebpz (ENSSFOG00015001353) CEBPZOS (ENSSFOG00015024785) FOXA2 (ENSSFOG00015025181) #20 pax1a (ENSSFOG00015001264) #21 nkx2.2b (ENSSFOG00015025712) #22 nkx2.4b (ENSSFOG00015001209) #23 xrn2 (ENSSFOG00015001091) #24 ENSSFOG00015031237 insm1a (ENSSFOG00015001057) #28 CFAP61 (ENSSFOG00015000956) #29 crnkl1 (ENSSFOG00015000946) #30 ENSSFOG00015000869 ENSSFOG00015000851 COL12A1 (ENSSFOG00015000556) ENSSFOG00015000838 COX7A2 (ENSSFOG00015000544) TMEM30A (ENSSFOG00015000538) FILIP1 (ENSSFOG00015000493) SENP6 (ENSSFOG00015000468) myo6a (ENSSFOG00015000308) Elephant shark MODERN SPECIES 1546 ENSCMIG00000018747 sft2d1 (ENSCMIG00000018744) foxa2 (ENSCMIG00000018738) #20 pax1a (ENSCMIG00000018735) #21 nkx2.2a (ENSCMIG00000018730) #22 nkx2.4a (ENSCMIG00000018729) #23 xrn2 (ENSCMIG00000018711) #24 ENSCMIG00000018703 #25 ENSCMIG00000018699 #25 ENSCMIG00000018696 RALGAPA2 (ENSCMIG00000018616) #27 ENSCMIG00000018538 insm1b (ENSCMIG00000018535) #28 ENSCMIG00000018531 ENSCMIG00000018529 #29 ENSCMIG00000018525 #29 crnkl1 (ENSCMIG00000018506) #30 naa20 (ENSCMIG00000018498) #31 RIN2 (ENSCMIG00000018491) #32 ENSCMIG00000018487 #33