Sarcopterygii	ANCESTRAL SPECIES	122														ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00940000163377.b
Tetrapoda	ANCESTRAL SPECIES	49														ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00940000163377.b
Amniota	ANCESTRAL SPECIES	12	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36
Mammalia	ANCESTRAL SPECIES	22	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Theria	ANCESTRAL SPECIES	13	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000163249	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Eutheria	ANCESTRAL SPECIES	11	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Primates	ANCESTRAL SPECIES	17	ENSGT00940000154755.c.a	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00940000164098 #8	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000164098 #8	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000013102.e.a.n #37
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b.g.a ##35	ENSGT00860000134050	ENSGT00940000153431.b.h #35
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b.g.a ##35	ENSGT00860000134050	ENSGT00940000153431.b.h #35
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00950000183087.A.a.b.b.g.e.b.a.b #16	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b.g.a ##35	ENSGT00860000134050	ENSGT00550000074823.a.i.b #34
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00940000164098.a.a #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00950000183087.A.a.b.b.g.e.b.a.b #16	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00550000074823.a.i.b #34	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b.h #35	ENSGT00390000006916.c #36
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00940000154755.d	ENSGT00940000164098.a.a #8	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00950000183087.A.a.b.b.g.e.b.a.b #16	ENSGT00940000156996 #17	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00550000074823.a.i.b #34	ENSGT00940000153431.b.h #35	ENSGT00390000006916.c #36	ENSGT00390000013102.e.a.n #37
Sooty mangabey	MODERN SPECIES	602	ENSCATG00000043016 #7	ENSCATG00000033110 #8	CST8 (ENSCATG00000033479) #9	ENSCATG00000043404 #10	CST11 (ENSCATG00000042927) #11	CSTL1 (ENSCATG00000031751) #12	NAPB (ENSCATG00000042262) #13	GZF1 (ENSCATG00000039279) #14	NXT1 (ENSCATG00000019026) #15	ENSCATG00000019258 #16	CD93 (ENSCATG00000009216) #17	SSTR4 (ENSCATG00000019242) #18	FOXA2 (ENSCATG00000033454) #19	ENSCATG00000022190 #20	PAX1 (ENSCATG00000029185) #21	NKX2-2 (ENSCATG00000041599) #22	NKX2-4 (ENSCATG00000023019) #23	XRN2 (ENSCATG00000040350) #24	KIZ (ENSCATG00000042535) #25	ENSCATG00000043761 #26	RALGAPA2 (ENSCATG00000035357) #27	INSM1 (ENSCATG00000037816) #28	CFAP61 (ENSCATG00000043610) #29	CRNKL1 (ENSCATG00000034247) #30	NAA20 (ENSCATG00000027935) #31	RIN2 (ENSCATG00000042503) #32	SLC24A3 (ENSCATG00000034515) #33	ENSCATG00000037045 #34	DTD1 (ENSCATG00000039340) #35	SEC23B (ENSCATG00000026216) #36	ENSCATG00000003757 #37
Drill	MODERN SPECIES	1539															PAX1 (ENSMLEG00000040057) #21	NKX2-2 (ENSMLEG00000016379) #22	XRN2 (ENSMLEG00000041897) #24	KIZ (ENSMLEG00000035970) #25	RALGAPA2 (ENSMLEG00000022293) #27
Olive baboon	MODERN SPECIES	7	ENTPD6 (ENSPANG00000026175)	ENSPANG00000045994	PYGB (ENSPANG00000024585)	ABHD12 (ENSPANG00000001312)	GINS1 (ENSPANG00000032488)	NINL (ENSPANG00000016039)	ENSPANG00000044377	NANP (ENSPANG00000031862)	ENSPANG00000048820 #16	CD93 (ENSPANG00000018432) #17	THBD (ENSPANG00000046781)	SSTR4 (ENSPANG00000004090) #18	ENSPANG00000044373	FOXA2 (ENSPANG00000011847) #19	PAX1 (ENSPANG00000008282) #21	ENSPANG00000043988 #22	NKX2-4 (ENSPANG00000014236) #23	XRN2 (ENSPANG00000018088) #24	KIZ (ENSPANG00000025535) #25	ENSPANG00000050604	RALGAPA2 (ENSPANG00000018089) #27	ENSPANG00000046512	CFAP61 (ENSPANG00000024586) #29	ENSPANG00000045223	CRNKL1 (ENSPANG00000017420) #30	NAA20 (ENSPANG00000017143) #31	RIN2 (ENSPANG00000025536) #32	SLC24A3 (ENSPANG00000024113) #33	ENSPANG00000050747	ENSPANG00000030391	ENSPANG00000048696
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00950000183087.A.a.b.b.g.e.b.a.b #16	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b #26	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b.g.a ##35	ENSGT00860000134050	ENSGT00940000153431.b.h #35
Pig-tailed macaque	MODERN SPECIES	130	ENSMNEG00000039062 #7	CST9 (ENSMNEG00000039807) #8	CST8 (ENSMNEG00000037697) #9	ENSMNEG00000032864 #10	CST11 (ENSMNEG00000041474) #11	CSTL1 (ENSMNEG00000044944) #12	NAPB (ENSMNEG00000036841) #13	GZF1 (ENSMNEG00000033117) #14	NXT1 (ENSMNEG00000027745) #15	ENSMNEG00000024687 ##16	CD93 (ENSMNEG00000042460) #17	SSTR4 (ENSMNEG00000038323) #18	FOXA2 (ENSMNEG00000011763) #19	ENSMNEG00000028347 #20	PAX1 (ENSMNEG00000040896) #21	NKX2-2 (ENSMNEG00000045238) #22	NKX2-4 (ENSMNEG00000028280) #23	XRN2 (ENSMNEG00000040626) #24	KIZ (ENSMNEG00000028617) #25	ENSMNEG00000039122 #26	RALGAPA2 (ENSMNEG00000033398) #27	INSM1 (ENSMNEG00000029140) #28	CFAP61 (ENSMNEG00000036910) #29	CRNKL1 (ENSMNEG00000037490) #30	NAA20 (ENSMNEG00000033202) #31	RIN2 (ENSMNEG00000005068) #32	SLC24A3 (ENSMNEG00000029022) #33	ENSMNEG00000043133 #34	ENSMNEG00000040178 #35	SEC23B (ENSMNEG00000030931) #36	ENSMNEG00000028082 #37
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00950000183087.A.a.b.b.g.e.b.a.b #16	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01100000263493.a.b.a.a.a.b.a.a.b.b.a.b.b.b.a.a.b.a.a.a	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b.g.a ##35	ENSGT00860000134050	ENSGT00390000006916.c #36
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000061186	CST8 (ENSMFAG00000033001) #9	ENSMFAG00000032810 #10	CST11 (ENSMFAG00000038093) #11	CSTL1 (ENSMFAG00000057818) #12	NAPB (ENSMFAG00000012865) #13	ENSMFAG00000058516	GZF1 (ENSMFAG00000042408) #14	NXT1 (ENSMFAG00000065310) #15	ENSMFAG00000026040 #16	CD93 (ENSMFAG00000043644) #17	SSTR4 (ENSMFAG00000017458) #18	FOXA2 (ENSMFAG00000047214) #19	ENSMFAG00000057184 #20	PAX1 (ENSMFAG00000044435) #21	NKX2-2 (ENSMFAG00000044462) #22	XRN2 (ENSMFAG00000038122) #24	KIZ (ENSMFAG00000036086) #25	RALGAPA2 (ENSMFAG00000039275) #27	CFAP61 (ENSMFAG00000040250) #29	CRNKL1 (ENSMFAG00000039893) #30	RIN2 (ENSMFAG00000002995) #32	ENSMFAG00000065169	SLC24A3 (ENSMFAG00000037051) #33	SCP2D1 (ENSMFAG00000050245)	ENSMFAG00000034375 ##35	SMIM26 (ENSMFAG00000052911)	SEC23B (ENSMFAG00000041652) #36	ENSMFAG00000030191 #37	RBBP9 (ENSMFAG00000058087)	POLR3F (ENSMFAG00000002227)
Rhesus	MODERN SPECIES	1	CST9 (ENSMMUG00000039259) #8	ENSMMUG00000063687	ENSMMUG00000059402	CST8 (ENSMMUG00000016489) #9	ENSMMUG00000016490 #10	CST11 (ENSMMUG00000022393) #11	CSTL1 (ENSMMUG00000055975) #12	NAPB (ENSMMUG00000022388) #13	GZF1 (ENSMMUG00000022387) #14	NXT1 (ENSMMUG00000022386) #15	CD93 (ENSMMUG00000016813) #17	THBD (ENSMMUG00000016814)	SSTR4 (ENSMMUG00000016815) #18	FOXA2 (ENSMMUG00000010410) #19	PAX1 (ENSMMUG00000019409) #21	ENSMMUG00000056728 #22	NKX2-4 (ENSMMUG00000011409) #23	XRN2 (ENSMMUG00000011405) #24	KIZ (ENSMMUG00000002060) #25	RALGAPA2 (ENSMMUG00000018371) #27	INSM1 (ENSMMUG00000039294) #28	CFAP61 (ENSMMUG00000042668) #29	CRNKL1 (ENSMMUG00000007709) #30	NAA20 (ENSMMUG00000007708) #31	RIN2 (ENSMMUG00000010114) #32	ENSMMUG00000051129	SLC24A3 (ENSMMUG00000002321) #33	SCP2D1 (ENSMMUG00000050690)	DTD1 (ENSMMUG00000012880) ##35	SEC23B (ENSMMUG00000012878) #36	RBBP9 (ENSMMUG00000004146)
Vervet Monkey	MODERN SPECIES	11	ENSCSAG00000011001	ENSCSAG00000011012	CST9L (ENSCSAG00000011017)	ENSCSAG00000011022 ##8	ENSCSAG00000011025 #7	CST3 (ENSCSAG00000011027)	ENSCSAG00000011032	ENSCSAG00000011037	GZF1 (ENSCSAG00000011054) #14	NXT1 (ENSCSAG00000018678) #15	CD93 (ENSCSAG00000011058) #17	THBD (ENSCSAG00000018677)	SSTR4 (ENSCSAG00000018676) #18	FOXA2 (ENSCSAG00000011062) #19	PAX1 (ENSCSAG00000011068) #21	NKX2-2 (ENSCSAG00000011072) #22	NKX2-4 (ENSCSAG00000011080) #23	XRN2 (ENSCSAG00000011094) #24	KIZ (ENSCSAG00000011135) #25	RALGAPA2 (ENSCSAG00000011248) #27	INSM1 (ENSCSAG00000018675) #28	CFAP61 (ENSCSAG00000011382) #29	CRNKL1 (ENSCSAG00000011434) #30	NAA20 (ENSCSAG00000011440) #31	RIN2 (ENSCSAG00000011446) #32	ENSCSAG00000011450	SLC24A3 (ENSCSAG00000011456) #33	SCP2D1 (ENSCSAG00000018674)	DTD1 (ENSCSAG00000011466) #35	SEC23B (ENSCSAG00000011476) #36	RBBP9 (ENSCSAG00000011497)
Rhinopithecus	ANCESTRAL SPECIES	176			ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000155999 #19	ENSGT00950000183087.A.b.b ##16	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183105.A.m.b #26	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b.h #35	ENSGT00390000006916.c #36	ENSGT00940000164207.g.b	ENSGT00390000014861	ENSGT00390000009679
Black snub-nosed monkey	MODERN SPECIES	2601															PAX1 (ENSRBIG00000042214) #21	NKX2-2 (ENSRBIG00000031086) #22	ENSRBIG00000014103
Golden snub-nosed monkey	MODERN SPECIES	1446				CST8 (ENSRROG00000030761) #9	ENSRROG00000037494 #10	CST11 (ENSRROG00000029851) #11	CSTL1 (ENSRROG00000032535) #12	NAPB (ENSRROG00000044287) #13	GZF1 (ENSRROG00000030533) #14	NXT1 (ENSRROG00000026657) #15	CD93 (ENSRROG00000012087) #17	FOXA2 (ENSRROG00000024272) #19	ENSRROG00000030464 ##16	ENSRROG00000040808 #20	PAX1 (ENSRROG00000038854) #21	NKX2-2 (ENSRROG00000041150) #22	NKX2-4 (ENSRROG00000006364) #23	XRN2 (ENSRROG00000044400) #24	ENSRROG00000030791 #25	ENSRROG00000041676 #26	RALGAPA2 (ENSRROG00000037467) #27	CFAP61 (ENSRROG00000040251) #29	CRNKL1 (ENSRROG00000040450) #30	NAA20 (ENSRROG00000036514) #31
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000013102.e.a.n #37
Hominidae	ANCESTRAL SPECIES	18	ENSGT00940000166721	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000013102.e.a.n #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041.g #15	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146844.a.b	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00910000148254	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00910000147760	ENSGT00940000153431.b #35	ENSGT00860000134050
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041.g #15	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146844.a.b	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00910000148254	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00910000147760	ENSGT00940000153431.b #35	ENSGT00860000134050
Pan	ANCESTRAL SPECIES	15	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041.g #15	ENSGT00910000147439	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00910000146844.a.b	ENSGT00910000146941 #20	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00910000148254	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00910000147760	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000013102.e.a.n.m.a #37
Bonobo	MODERN SPECIES	11	CST8 (ENSPPAG00000037606) #9	ENSPPAG00000034245 #10	CST11 (ENSPPAG00000025372) #11	CSTL1 (ENSPPAG00000038564) #12	NAPB (ENSPPAG00000043876) #13	GZF1 (ENSPPAG00000028487) #14	NXT1 (ENSPPAG00000020479) #15	ENSPPAG00000024534	CD93 (ENSPPAG00000040099) #17	THBD (ENSPPAG00000018179)	SSTR4 (ENSPPAG00000036986) #18	ENSPPAG00000031368 #19	ENSPPAG00000024066	ENSPPAG00000043307 #20	PAX1 (ENSPPAG00000035911) #21	NKX2-2 (ENSPPAG00000039042) #22	ENSPPAG00000037349	XRN2 (ENSPPAG00000033549) #24	KIZ (ENSPPAG00000031020) #25	RALGAPA2 (ENSPPAG00000039422) #27	ENSPPAG00000036172 #29	CRNKL1 (ENSPPAG00000027847) #30	NAA20 (ENSPPAG00000016439) #31	RIN2 (ENSPPAG00000037433) #32	ENSPPAG00000035002	SLC24A3 (ENSPPAG00000032340) #33	SCP2D1 (ENSPPAG00000033243)	ENSPPAG00000030919	DTD1 (ENSPPAG00000030006) #35	SEC23B (ENSPPAG00000021097) #36	ENSPPAG00000041345
Chimpanzee	MODERN SPECIES	11	CST8 (ENSPTRG00000013324) #9	ENSPTRG00000045117 #10	CST11 (ENSPTRG00000013323) #11	CSTL1 (ENSPTRG00000045776) #12	NAPB (ENSPTRG00000013321) #13	GZF1 (ENSPTRG00000013320) #14	NXT1 (ENSPTRG00000013319) #15	ENSPTRG00000046209	CD93 (ENSPTRG00000013318) #17	THBD (ENSPTRG00000013317)	SSTR4 (ENSPTRG00000013316) #18	FOXA2 (ENSPTRG00000048023) #19	ENSPTRG00000045139	ENSPTRG00000044291 #20	PAX1 (ENSPTRG00000013311) #21	NKX2-2 (ENSPTRG00000013310) #22	NKX2-4 (ENSPTRG00000013309) #23	ENSPTRG00000047508	XRN2 (ENSPTRG00000013308) #24	ENSPTRG00000044546	KIZ (ENSPTRG00000046348) #25	RALGAPA2 (ENSPTRG00000013306) #27	CFAP61 (ENSPTRG00000013301) #29	CRNKL1 (ENSPTRG00000030609) #30	NAA20 (ENSPTRG00000013299) #31	RIN2 (ENSPTRG00000013298) #32	SLC24A3 (ENSPTRG00000013294) #33	SCP2D1 (ENSPTRG00000013293)	ENSPTRG00000048655	DTD1 (ENSPTRG00000013291) #35	SEC23B (ENSPTRG00000013290) #36
Human	MODERN SPECIES	12	CST4 (ENSG00000101441) #7	CST3 (ENSG00000101439)	CST9 (ENSG00000173335) #8	CST9L (ENSG00000101435)	CST8 (ENSG00000125815) #9	CST11 (ENSG00000125831) #11	CSTL1 (ENSG00000125823) #12	NAPB (ENSG00000125814) #13	GZF1 (ENSG00000125812) #14	NXT1 (ENSG00000132661) #15	CD93 (ENSG00000125810) #17	THBD (ENSG00000178726)	SSTR4 (ENSG00000132671) #18	FOXA2 (ENSG00000125798) #19	PAX1 (ENSG00000125813) #21	NKX2-2 (ENSG00000125820) #22	NKX2-4 (ENSG00000125816) #23	XRN2 (ENSG00000088930) #24	KIZ (ENSG00000088970) #25	RALGAPA2 (ENSG00000188559) #27	INSM1 (ENSG00000173404) #28	CFAP61 (ENSG00000089101) #29	CRNKL1 (ENSG00000101343) #30	NAA20 (ENSG00000173418) #31	RIN2 (ENSG00000132669) #32	SLC24A3 (ENSG00000185052) #33	SCP2D1 (ENSG00000132631)	DTD1 (ENSG00000125821) #35	ENSG00000284776	SMIM26 (ENSG00000232388)	SEC23B (ENSG00000101310) #36
Gorilla	MODERN SPECIES	11	CST5 (ENSGGOG00000016581)	CST2 (ENSGGOG00000007675) #7	CST1 (ENSGGOG00000002786) #7	CST9 (ENSGGOG00000009518) #8	CST9L (ENSGGOG00000015132)	ENSGGOG00000038343	CST8 (ENSGGOG00000006139) #9	CSTL1 (ENSGGOG00000013172) #12	NAPB (ENSGGOG00000008548) #13	GZF1 (ENSGGOG00000023248) #14	ENSGGOG00000012539 #15	FOXA2 (ENSGGOG00000006368) #19	ENSGGOG00000040550	ENSGGOG00000038211 #20	PAX1 (ENSGGOG00000016075) #21	NKX2-2 (ENSGGOG00000008080) #22	ENSGGOG00000027030 #23	ENSGGOG00000038958	XRN2 (ENSGGOG00000013738) #24	ENSGGOG00000022720	KIZ (ENSGGOG00000002290) #25	RALGAPA2 (ENSGGOG00000006329) #27	CFAP61 (ENSGGOG00000014189) #29	CRNKL1 (ENSGGOG00000014176) #30	NAA20 (ENSGGOG00000004247) #31	RIN2 (ENSGGOG00000016772) #32	SLC24A3 (ENSGGOG00000004364) #33	SCP2D1 (ENSGGOG00000005677)	ENSGGOG00000042789	DTD1 (ENSGGOG00000000080) #35	SEC23B (ENSGGOG00000022369) #36
Orangutan	MODERN SPECIES	11	ENSPPYG00000010772	ENSPPYG00000010771	CST8 (ENSPPYG00000010770) #9	ENSPPYG00000037632 #10	CST11 (ENSPPYG00000010769) #11	CSTL1 (ENSPPYG00000010768) #12	NAPB (ENSPPYG00000010767) #13	GZF1 (ENSPPYG00000010766) #14	NXT1 (ENSPPYG00000010765) #15	ENSPPYG00000010764	CD93 (ENSPPYG00000010763) #17	THBD (ENSPPYG00000010762)	SSTR4 (ENSPPYG00000010761) #18	FOXA2 (ENSPPYG00000040463) #19	PAX1 (ENSPPYG00000010758) #21	NKX2-2 (ENSPPYG00000010757) #22	NKX2-4 (ENSPPYG00000010756) #23	XRN2 (ENSPPYG00000010755) #24	KIZ (ENSPPYG00000010754) #25	RALGAPA2 (ENSPPYG00000010751) #27	INSM1 (ENSPPYG00000010750) #28	CFAP61 (ENSPPYG00000010748) #29	CRNKL1 (ENSPPYG00000010747) #30	NAA20 (ENSPPYG00000010746) #31	RIN2 (ENSPPYG00000010745) #32	SLC24A3 (ENSPPYG00000010743) #33	SCP2D1 (ENSPPYG00000010741)	ENSPPYG00000010740 #35	SMIM26 (ENSPPYG00000033260)	SEC23B (ENSPPYG00000010739) #36	RBBP9 (ENSPPYG00000036673)
Gibbon	MODERN SPECIES	3	CST3 (ENSNLEG00000035405)	CST9 (ENSNLEG00000011616) #8	CST8 (ENSNLEG00000011607) #9	ENSNLEG00000033018 #10	CST11 (ENSNLEG00000011603) #11	CSTL1 (ENSNLEG00000011597) #12	NAPB (ENSNLEG00000027099) #13	GZF1 (ENSNLEG00000011565) #14	ENSNLEG00000033556	CD93 (ENSNLEG00000011559) #17	THBD (ENSNLEG00000011558)	SSTR4 (ENSNLEG00000018627) #18	ENSNLEG00000031709	ENSNLEG00000031487 #19	PAX1 (ENSNLEG00000010049) #21	NKX2-2 (ENSNLEG00000010048) #22	ENSNLEG00000010047 #23	XRN2 (ENSNLEG00000009991) #24	KIZ (ENSNLEG00000009954) #25	ENSNLEG00000033115 ##26	RALGAPA2 (ENSNLEG00000009931) #27	CFAP61 (ENSNLEG00000009893) #29	ENSNLEG00000009862 #30	NAA20 (ENSNLEG00000028442) #31	RIN2 (ENSNLEG00000009844) #32	ENSNLEG00000035380	SLC24A3 (ENSNLEG00000009831) #33	ENSNLEG00000027860	ENSNLEG00000034887	DTD1 (ENSNLEG00000027109) #35	SEC23B (ENSNLEG00000009798) #36
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000164098 #8	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861.a	ENSGT00390000009679	ENSGT00390000000549
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000164098 #8	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861.a	ENSGT00390000009679	ENSGT00390000000549
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	17	CST8 (ENSCJAG00000000697) #9	ENSCJAG00000074097 #10	CST11 (ENSCJAG00000080392) #11	CSTL1 (ENSCJAG00000041540) #12	NAPB (ENSCJAG00000000712) #13	GZF1 (ENSCJAG00000000733) #14	NXT1 (ENSCJAG00000044836) #15	CD93 (ENSCJAG00000005796) #17	THBD (ENSCJAG00000005795)	FOXA2 (ENSCJAG00000005785) #19	ENSCJAG00000070048	ENSCJAG00000075555	PAX1 (ENSCJAG00000005773) #21	ENSCJAG00000070559	ENSCJAG00000076879	ENSCJAG00000051781 #22	ENSCJAG00000081459	NKX2-4 (ENSCJAG00000040336) #23	XRN2 (ENSCJAG00000005611) #24	KIZ (ENSCJAG00000005568) #25	RALGAPA2 (ENSCJAG00000005471) #27	INSM1 (ENSCJAG00000040556) #28	CFAP61 (ENSCJAG00000005444) #29	CRNKL1 (ENSCJAG00000005393) #30	ENSCJAG00000005377 #31	RIN2 (ENSCJAG00000005342) #32	SLC24A3 (ENSCJAG00000005325) #33	DTD1 (ENSCJAG00000005306) #35	ENSCJAG00000086632	SEC23B (ENSCJAG00000005179) #36	RBBP9 (ENSCJAG00000005170)
Marmoset	MODERN SPECIES		ENSCJAG00000035362	SPIN1 (ENSCJAG00000038940)	NXNL2 (ENSCJAG00000040941)	ENSCJAG00000045436	S1PR3 (ENSCJAG00000045198)	SHC3 (ENSCJAG00000011207)	CKS2 (ENSCJAG00000082907)	SECISBP2 (ENSCJAG00000007806)	SEMA4D (ENSCJAG00000007883)	GADD45G (ENSCJAG00000075792)	ENSCJAG00000086138	ENSCJAG00000073981	NFIL3 (ENSCJAG00000005728)	ENSCJAG00000005695	SYK (ENSCJAG00000005666)	ENSCJAG00000062354 #22	DIRAS2 (ENSCJAG00000039042)	ENSCJAG00000051243	ENSCJAG00000072229	ENSCJAG00000005635	DAPK1 (ENSCJAG00000005569)	ENSCJAG00000074564	GAS1 (ENSCJAG00000062210)	ENSCJAG00000084670	ZNF484 (ENSCJAG00000005536)	PRXL2C (ENSCJAG00000076685)	ENSCJAG00000061833	ENSCJAG00000012598	HABP4 (ENSCJAG00000012589)	ENSCJAG00000040778	SLC35D2 (ENSCJAG00000012556)
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00940000154755.d	ENSGT00940000164098 #8	ENSGT00940000161877	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861.a	ENSGT00390000009679	ENSGT00390000000549
Bolivian squirrel monkey	MODERN SPECIES	96															PAX1 (ENSSBOG00000032573) #21	NKX2-2 (ENSSBOG00000032080) #22	XRN2 (ENSSBOG00000021014) #24	KIZ (ENSSBOG00000032917) #25	RALGAPA2 (ENSSBOG00000005301) #27	CFAP61 (ENSSBOG00000031606) #29	CRNKL1 (ENSSBOG00000029672) #30	NAA20 (ENSSBOG00000005179) #31	RIN2 (ENSSBOG00000028798) #32	SLC24A3 (ENSSBOG00000030521) #33	DTD1 (ENSSBOG00000025961) #35	SEC23B (ENSSBOG00000020929) #36	RBBP9 (ENSSBOG00000020458)	POLR3F (ENSSBOG00000018207)	DZANK1 (ENSSBOG00000030675)	ENSSBOG00000028652 #37	ZNF133 (ENSSBOG00000025399)
Capuchin	MODERN SPECIES	134	CST3 (ENSCCAG00000001843)	CST9 (ENSCCAG00000024829) #8	CST9L (ENSCCAG00000026509)	CST8 (ENSCCAG00000024862) #9	ENSCCAG00000037786 #10	CST11 (ENSCCAG00000035766) #11	CSTL1 (ENSCCAG00000033212) #12	NAPB (ENSCCAG00000029344) #13	GZF1 (ENSCCAG00000035601) #14	NXT1 (ENSCCAG00000015478) #15	CD93 (ENSCCAG00000034013) #17	THBD (ENSCCAG00000020711)	SSTR4 (ENSCCAG00000019059) #18	FOXA2 (ENSCCAG00000027576) #19	PAX1 (ENSCCAG00000025569) #21	NKX2-2 (ENSCCAG00000035862) #22	NKX2-4 (ENSCCAG00000032197) #23	ENSCCAG00000036857 #24	KIZ (ENSCCAG00000031682) #25	RALGAPA2 (ENSCCAG00000028362) #27	INSM1 (ENSCCAG00000023181) #28	CFAP61 (ENSCCAG00000026777) #29	CRNKL1 (ENSCCAG00000027037) #30	NAA20 (ENSCCAG00000028274) #31
Mas night monkey	MODERN SPECIES	720												CD93 (ENSANAG00000031974) #17	SSTR4 (ENSANAG00000031033) #18	FOXA2 (ENSANAG00000000151) #19	PAX1 (ENSANAG00000031911) #21	NKX2-2 (ENSANAG00000031496) #22	NKX2-4 (ENSANAG00000025954) #23	XRN2 (ENSANAG00000020126) #24	KIZ (ENSANAG00000030324) #25	RALGAPA2 (ENSANAG00000035297) #27	ENSANAG00000025204	INSM1 (ENSANAG00000021754) #28	ENSANAG00000026688 #29	ENSANAG00000033104 #29	ENSANAG00000023984	CRNKL1 (ENSANAG00000024889) #30	ENSANAG00000021111 #31	RIN2 (ENSANAG00000033313) #32	SLC24A3 (ENSANAG00000022086) #33
Tarsier	MODERN SPECIES	6553																NKX2-2 (ENSTSYG00000035825) #22
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000154755.c.a	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000164098 #8	ENSGT00940000162294 #9	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c.b #36	ENSGT00390000014861	ENSGT00390000009679
Mouse lemur	MODERN SPECIES	9	CST7 (ENSMICG00000002037)	SYNDIG1 (ENSMICG00000027578)	ENSMICG00000032368	ENSMICG00000043235	ENSMICG00000004617	CST9 (ENSMICG00000047052) #8	CST8 (ENSMICG00000017905) #9	CST11 (ENSMICG00000017904) #11	CSTL1 (ENSMICG00000017903) #12	NAPB (ENSMICG00000017902) #13	GZF1 (ENSMICG00000046070) #14	NXT1 (ENSMICG00000044853) #15	CD93 (ENSMICG00000017898) #17	FOXA2 (ENSMICG00000030588) #19	PAX1 (ENSMICG00000016968) #21	NKX2-2 (ENSMICG00000045009) #22	NKX2-4 (ENSMICG00000032695) #23	XRN2 (ENSMICG00000008126) #24	KIZ (ENSMICG00000008114) #25	RALGAPA2 (ENSMICG00000006077) #27	INSM1 (ENSMICG00000037992) #28	CFAP61 (ENSMICG00000006057) #29	CRNKL1 (ENSMICG00000006048) #30	ENSMICG00000006044 #31	RIN2 (ENSMICG00000006035) #32	SLC24A3 (ENSMICG00000006014) #33	DTD1 (ENSMICG00000010771) #35	ENSMICG00000010750 #36	ENSMICG00000042283 #36	RBBP9 (ENSMICG00000047808)	POLR3F (ENSMICG00000044519)
Lemuriformes_a	ANCESTRAL SPECIES	137	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000164098 #8	ENSGT00940000162294 #9	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c.b #36	ENSGT00390000014861	ENSGT00390000009679
Greater bamboo lemur	MODERN SPECIES	878		ENSPSMG00000008949	ENSPSMG00000008941	CST8 (ENSPSMG00000008931) #9	ENSPSMG00000008923 ##10	CST11 (ENSPSMG00000008919) #11	CSTL1 (ENSPSMG00000008917) #12	NAPB (ENSPSMG00000008819) #13	GZF1 (ENSPSMG00000008681) #14	NXT1 (ENSPSMG00000008668) #15	CD93 (ENSPSMG00000008660) #17	THBD (ENSPSMG00000008649)	SSTR4 (ENSPSMG00000008634) #18	FOXA2 (ENSPSMG00000008622) #19	PAX1 (ENSPSMG00000008610) #21	NKX2-2 (ENSPSMG00000008596) #22	NKX2-4 (ENSPSMG00000008590) #23	XRN2 (ENSPSMG00000008572) #24	KIZ (ENSPSMG00000008514) #25	ENSPSMG00000008491	RALGAPA2 (ENSPSMG00000008474) #27	INSM1 (ENSPSMG00000008427) #28
Coquerels sifaka	MODERN SPECIES	560			ENSPCOG00000018222	ENSPCOG00000001285	CST3 (ENSPCOG00000027602)	CST9L (ENSPCOG00000008034)	CST8 (ENSPCOG00000017881) #9	CST11 (ENSPCOG00000025724) #11	CSTL1 (ENSPCOG00000016553) #12	NAPB (ENSPCOG00000022495) #13	GZF1 (ENSPCOG00000024180) #14	NXT1 (ENSPCOG00000025624) #15	CD93 (ENSPCOG00000022300) #17	FOXA2 (ENSPCOG00000001633) #19	PAX1 (ENSPCOG00000027636) #21	NKX2-2 (ENSPCOG00000016151) #22
Bushbaby	MODERN SPECIES	251							NAPB (ENSOGAG00000012607) #13	GZF1 (ENSOGAG00000028389) #14	NXT1 (ENSOGAG00000000717) #15	CD93 (ENSOGAG00000017109) #17	THBD (ENSOGAG00000026061)	SSTR4 (ENSOGAG00000017105) #18	ENSOGAG00000025509	FOXA2 (ENSOGAG00000033297) #19	PAX1 (ENSOGAG00000033162) #21	NKX2-2 (ENSOGAG00000029474) #22	ENSOGAG00000025951	NKX2-4 (ENSOGAG00000024342) #23	XRN2 (ENSOGAG00000001068) #24	KIZ (ENSOGAG00000010591) #25	RALGAPA2 (ENSOGAG00000011557) #27	INSM1 (ENSOGAG00000034802) #28	ENSOGAG00000031837	CFAP61 (ENSOGAG00000011546) #29	CRNKL1 (ENSOGAG00000011544) #30	NAA20 (ENSOGAG00000011542) #31	RIN2 (ENSOGAG00000011531) #32	SLC24A3 (ENSOGAG00000026410) #33	SCP2D1 (ENSOGAG00000004222)	DTD1 (ENSOGAG00000007972) #35	ENSOGAG00000031912
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Tree shrew	MODERN SPECIES	9962																NKX2-2 (ENSTBEG00000015943) #22
Glires	ANCESTRAL SPECIES	17	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Lagomorpha	ANCESTRAL SPECIES	57				ENSGT00940000154755.c.a	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.B ##10	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861	ENSGT00390000009679	ENSGT00390000000549	ENSGT00940000162260
Rabbit	MODERN SPECIES	15	ENSOCUG00000021033	ENSOCUG00000024585	ENSOCUG00000029526	ENSOCUG00000026263	CST8 (ENSOCUG00000024979) #9	ENSOCUG00000027150 ##10	CSTL1 (ENSOCUG00000024430) #12	ENSOCUG00000025538	NAPB (ENSOCUG00000009263) #13	ENSOCUG00000025214 #14	NXT1 (ENSOCUG00000025924) #15	ENSOCUG00000024138	CD93 (ENSOCUG00000014812) #17	FOXA2 (ENSOCUG00000007368) #19	PAX1 (ENSOCUG00000003276) #21	NKX2-2 (ENSOCUG00000007166) #22	ENSOCUG00000024195	XRN2 (ENSOCUG00000013468) #24	KIZ (ENSOCUG00000013848) #25	RALGAPA2 (ENSOCUG00000017951) #27	CFAP61 (ENSOCUG00000015506) #29	CRNKL1 (ENSOCUG00000015484) #30	NAA20 (ENSOCUG00000015481) #31	RIN2 (ENSOCUG00000015450) #32	SLC24A3 (ENSOCUG00000009833) #33	ENSOCUG00000035674	SCP2D1 (ENSOCUG00000010991)	DTD1 (ENSOCUG00000010988) #35	ENSOCUG00000037347	SEC23B (ENSOCUG00000015079) #36	ENSOCUG00000027382
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Kangaroo rat	MODERN SPECIES	418	Apmap (ENSDORG00000025391)	Cst7 (ENSDORG00000005298)	Syndig1 (ENSDORG00000003111)	ENSDORG00000008948	Cst3 (ENSDORG00000027673)	Cst13 (ENSDORG00000027228)	Cst8 (ENSDORG00000011859) #9	Cst12 (ENSDORG00000023744) #10	Napb (ENSDORG00000011856) #13	Gzf1 (ENSDORG00000011855) #14	Nxt1 (ENSDORG00000024690) #15	Cd93 (ENSDORG00000028704) #17	Sstr4 (ENSDORG00000010486) #18	Foxa2 (ENSDORG00000027269) #19	Pax1 (ENSDORG00000016051) #21	Nkx2-2 (ENSDORG00000007972) #22	Nkx2-4 (ENSDORG00000023542) #23	Xrn2 (ENSDORG00000005434) #24	ENSDORG00000024554 #27	ENSDORG00000025962 #27	Insm1 (ENSDORG00000009864) #28	ENSDORG00000000395	ENSDORG00000029623 #29	ENSDORG00000024717 #29	ENSDORG00000000394 #30	Naa20 (ENSDORG00000028339) #31	Rin2 (ENSDORG00000000392) #32	Slc24a3 (ENSDORG00000008187) #33	Scp2d1 (ENSDORG00000002960)	Dtd1 (ENSDORG00000006940) #35	Sec23b (ENSDORG00000014203) #36
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Lesser Egyptian jerboa	MODERN SPECIES	159		Cst3 (ENSJJAG00000013565)	Cst9 (ENSJJAG00000013510)	Cst13 (ENSJJAG00000013369)	Cst8 (ENSJJAG00000013212) #9	Cst12 (ENSJJAG00000012500) #10	Cstdc1 (ENSJJAG00000012315) ##10	Cstl1 (ENSJJAG00000011653) #12	Napb (ENSJJAG00000010872) #13	Gzf1 (ENSJJAG00000008172) #14	ENSJJAG00000012022 #15	Cd93 (ENSJJAG00000007591) #17	Sstr4 (ENSJJAG00000023336) #18	Foxa2 (ENSJJAG00000023228) #19	Pax1 (ENSJJAG00000023177) #21	Nkx2-2 (ENSJJAG00000022426) #22	Nkx2-4 (ENSJJAG00000022335) #23	Xrn2 (ENSJJAG00000022128) #24	Kiz (ENSJJAG00000021546) #25	ENSJJAG00000020834	ENSJJAG00000020710 #27	ENSJJAG00000020467 #27	Insm1 (ENSJJAG00000020276) #28	Cfap61 (ENSJJAG00000018922) #29	Crnkl1 (ENSJJAG00000016926) #30	Naa20 (ENSJJAG00000016004) #31	ENSJJAG00000015745 #32	Slc24a3 (ENSJJAG00000015385) #33	Dtd1 (ENSJJAG00000014379) #35	Sec23b (ENSJJAG00000018722) #36	Rbbp9 (ENSJJAG00000017816)
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Upper Galilee mountains blind mole rat	MODERN SPECIES	450															Pax1 (ENSNGAG00000011690) #21	Nkx2-2 (ENSNGAG00000015181) #22	Nkx2-4 (ENSNGAG00000009374) #23	Xrn2 (ENSNGAG00000018138) #24	Kiz (ENSNGAG00000013505) #25	ENSNGAG00000015751 #27	ENSNGAG00000011107 #27	Insm1 (ENSNGAG00000020652) #28	Cfap61 (ENSNGAG00000020907) #29	Crnkl1 (ENSNGAG00000023097) #30	Naa20 (ENSNGAG00000014784) #31	Rin2 (ENSNGAG00000009777) #32	Slc24a3 (ENSNGAG00000011154) #33
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001017812	Cst13 (ENSCGRG00001024079)	Cst8 (ENSCGRG00001020750) #9	Cst12 (ENSCGRG00001024036) #10	Cstdc1 (ENSCGRG00001024407) ##10	Cst11 (ENSCGRG00001004859) #11	Cstl1 (ENSCGRG00001006313) #12	Napb (ENSCGRG00001015884) #13	Gzf1 (ENSCGRG00001003944) #14	ENSCGRG00001007062 #15	Cd93 (ENSCGRG00001016628) #17	Thbd (ENSCGRG00001010215)	Sstr4 (ENSCGRG00001010896) #18	Foxa2 (ENSCGRG00001000494) #19	Pax1 (ENSCGRG00001009223) #21	Nkx2-2 (ENSCGRG00001013924) #22	ENSCGRG00001016394	Nkx2-4 (ENSCGRG00001002742) #23	Xrn2 (ENSCGRG00001010676) #24	Kiz (ENSCGRG00001020800) #25	Ralgapa2 (ENSCGRG00001024249) #27	Insm1 (ENSCGRG00001011430) #28	Cfap61 (ENSCGRG00001022702) #29	Slc24a3 (ENSCGRG00001004364) #33	Scp2d1 (ENSCGRG00001008412)	Dtd1 (ENSCGRG00001008221) #35	Smim26 (ENSCGRG00001010844)	Sec23b (ENSCGRG00001020368) #36	Rbbp9 (ENSCGRG00001022430)	Polr3f (ENSCGRG00001002032)	Dzank1 (ENSCGRG00001019385)
Golden Hamster	MODERN SPECIES	650	Syndig1 (ENSMAUG00000012485)	ENSMAUG00000013001	Cst10 (ENSMAUG00000020427)	Cst3 (ENSMAUG00000012476)	Cstdc2 (ENSMAUG00000014409)	Cst9 (ENSMAUG00000012174)	Cst13 (ENSMAUG00000021851)	Cst12 (ENSMAUG00000010970) #10	Napb (ENSMAUG00000018004) #13	Gzf1 (ENSMAUG00000019656) #14	Nxt1 (ENSMAUG00000004141) #15	Cd93 (ENSMAUG00000019441) #17	Sstr4 (ENSMAUG00000008430) #18	Foxa2 (ENSMAUG00000016457) #19	Pax1 (ENSMAUG00000019674) #21	Nkx2-2 (ENSMAUG00000004347) #22	Nkx2-4 (ENSMAUG00000013928) #23	Xrn2 (ENSMAUG00000021842) #24	Kiz (ENSMAUG00000012933) #25	Ralgapa2 (ENSMAUG00000000917) #27	Insm1 (ENSMAUG00000008643) #28	Cfap61 (ENSMAUG00000021388) #29	ENSMAUG00000018263	ENSMAUG00000014865	Crnkl1 (ENSMAUG00000020764) #30	Naa20 (ENSMAUG00000016403) #31	Rin2 (ENSMAUG00000010319) #32	Slc24a3 (ENSMAUG00000014182) #33	Scp2d1 (ENSMAUG00000008663)	Dtd1 (ENSMAUG00000021240) #35	Smim26 (ENSMAUG00000021093)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000161877.c.a	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Northern American deer mouse	MODERN SPECIES	17	Cst13 (ENSPEMG00000005338)	Cst8 (ENSPEMG00000030932) #9	Cst12 (ENSPEMG00000000557) #10	Cstdc1 (ENSPEMG00000018705) ##10	Cst11 (ENSPEMG00000000143) #11	Cstl1 (ENSPEMG00000015396) #12	Napb (ENSPEMG00000014658) #13	Gzf1 (ENSPEMG00000011285) #14	Nxt1 (ENSPEMG00000010397) #15	Cd93 (ENSPEMG00000009909) #17	Thbd (ENSPEMG00000013258)	Sstr4 (ENSPEMG00000013404) #18	Foxa2 (ENSPEMG00000018383) #19	ENSPEMG00000013352	Pax1 (ENSPEMG00000013032) #21	Nkx2-2 (ENSPEMG00000031205) #22	Xrn2 (ENSPEMG00000000111) #24	Kiz (ENSPEMG00000019926) #25	ENSPEMG00000018301	Ralgapa2 (ENSPEMG00000015207) #27	Insm1 (ENSPEMG00000011704) #28	Cfap61 (ENSPEMG00000019999) #29	Crnkl1 (ENSPEMG00000000073) #30	Naa20 (ENSPEMG00000019944) #31	Rin2 (ENSPEMG00000007218) #32	Slc24a3 (ENSPEMG00000019985) #33	ENSPEMG00000027872	Scp2d1 (ENSPEMG00000012681)	Dtd1 (ENSPEMG00000019439) #35	Smim26 (ENSPEMG00000025969)	Sec23b (ENSPEMG00000019699) #36
Prairie vole	MODERN SPECIES	86	Cst13 (ENSMOCG00000012990)	Cst8 (ENSMOCG00000020831) #9	Cst12 (ENSMOCG00000013277) #10	Cstdc1 (ENSMOCG00000015424) ##10	Cst11 (ENSMOCG00000016678) #11	Cstl1 (ENSMOCG00000019330) #12	Napb (ENSMOCG00000000502) #13	Gzf1 (ENSMOCG00000017816) #14	Nxt1 (ENSMOCG00000018712) #15	ENSMOCG00000014565	Cd93 (ENSMOCG00000008988) #17	Thbd (ENSMOCG00000004558)	Sstr4 (ENSMOCG00000004743) #18	Foxa2 (ENSMOCG00000017025) #19	Pax1 (ENSMOCG00000000474) #21	Nkx2-2 (ENSMOCG00000016851) #22	Nkx2-4 (ENSMOCG00000012451) #23	Xrn2 (ENSMOCG00000012588) #24	Kiz (ENSMOCG00000022509) #25	ENSMOCG00000020632	Ralgapa2 (ENSMOCG00000015663) #27	Insm1 (ENSMOCG00000010418) #28	Cfap61 (ENSMOCG00000001829) #29	ENSMOCG00000000681 #30	ENSMOCG00000021892 #31	Rin2 (ENSMOCG00000011014) #32	Slc24a3 (ENSMOCG00000014059) #33	Scp2d1 (ENSMOCG00000005227)	Dtd1 (ENSMOCG00000001062) #35	ENSMOCG00000016611	Sec23b (ENSMOCG00000003908) #36
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Rat	MODERN SPECIES	13	Cst9l (ENSRNOG00000005162)	Cst13 (ENSRNOG00000005103)	Cst8 (ENSRNOG00000004989) #9	Cst12 (ENSRNOG00000004946) #10	LOC257643 (ENSRNOG00000004858) ##10	Cst11 (ENSRNOG00000004808) #11	Cstl1 (ENSRNOG00000004779) #12	Napb (ENSRNOG00000004753) #13	Gzf1 (ENSRNOG00000004735) #14	Nxt1 (ENSRNOG00000004700) #15	Cd93 (ENSRNOG00000024799) #17	Thbd (ENSRNOG00000004687)	Sstr4 (ENSRNOG00000004641) #18	Foxa2 (ENSRNOG00000013133) #19	Pax1 (ENSRNOG00000024882) #21	Nkx2-2 (ENSRNOG00000012728) #22	Nkx2-4 (ENSRNOG00000012647) #23	Xrn2 (ENSRNOG00000011785) #24	Kiz (ENSRNOG00000025141) #25	ENSRNOG00000070752	Ralgapa2 (ENSRNOG00000036964) #27	Insm1 (ENSRNOG00000068937) #28	AABR07054096.1 (ENSRNOG00000011028) #29	Crnkl1 (ENSRNOG00000010587) #30	Naa20 (ENSRNOG00000010523) #31	Rin2 (ENSRNOG00000010131) #32	Slc24a3 (ENSRNOG00000060687) #33	Scp2d1 (ENSRNOG00000009461)	Dtd1 (ENSRNOG00000008746) #35	Smim26 (ENSRNOG00000036971)	Sec23b (ENSRNOG00000008411) #36
Mus	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Shrew mouse	MODERN SPECIES	16	Cstdc2 (MGP_PahariEiJ_G0025860)	Cst13 (MGP_PahariEiJ_G0025859)	Cst8 (MGP_PahariEiJ_G0025858) #9	Cst12 (MGP_PahariEiJ_G0025857) #10	Cstdc1 (MGP_PahariEiJ_G0025856) ##10	Cst11 (MGP_PahariEiJ_G0025855) #11	Cstl1 (MGP_PahariEiJ_G0025854) #12	Napb (MGP_PahariEiJ_G0025853) #13	Gzf1 (MGP_PahariEiJ_G0025852) #14	Nxt1 (MGP_PahariEiJ_G0025851) #15	Cd93 (MGP_PahariEiJ_G0025850) #17	Thbd (MGP_PahariEiJ_G0025849)	Sstr4 (MGP_PahariEiJ_G0025848) #18	Foxa2 (MGP_PahariEiJ_G0025847) #19	Pax1 (MGP_PahariEiJ_G0025846) #21	Nkx2-2 (MGP_PahariEiJ_G0025845) #22	Nkx2-4 (MGP_PahariEiJ_G0025844) #23	Xrn2 (MGP_PahariEiJ_G0025843) #24	Kiz (MGP_PahariEiJ_G0025842) #25	Ralgapa2 (MGP_PahariEiJ_G0025841) #27	Insm1 (MGP_PahariEiJ_G0025840) #28	Cfap61 (MGP_PahariEiJ_G0025839) #29	Crnkl1 (MGP_PahariEiJ_G0025838) #30	Naa20 (MGP_PahariEiJ_G0025837) #31	Rin2 (MGP_PahariEiJ_G0025836) #32	MGP_PahariEiJ_G0025835 #33	Scp2d1 (MGP_PahariEiJ_G0025834)	Dtd1 (MGP_PahariEiJ_G0025833) #35	Smim26 (MGP_PahariEiJ_G0025832)	Sec23b (MGP_PahariEiJ_G0025831) #36	Rbbp9 (MGP_PahariEiJ_G0025830)
Mus_A	ANCESTRAL SPECIES		ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c.c #36
Ryukyu mouse	MODERN SPECIES	11	Cst9 (MGP_CAROLIEiJ_G0024417)	Cst13 (MGP_CAROLIEiJ_G0024416)	Cst8 (MGP_CAROLIEiJ_G0024415) #9	Cst12 (MGP_CAROLIEiJ_G0024414) #10	Cstdc1 (MGP_CAROLIEiJ_G0024413) ##10	Cst11 (MGP_CAROLIEiJ_G0024412) #11	Cstl1 (MGP_CAROLIEiJ_G0024411) #12	Napb (MGP_CAROLIEiJ_G0024410) #13	Gzf1 (MGP_CAROLIEiJ_G0024409) #14	Nxt1 (MGP_CAROLIEiJ_G0024408) #15	Cd93 (MGP_CAROLIEiJ_G0024407) #17	Thbd (MGP_CAROLIEiJ_G0024406)	Sstr4 (MGP_CAROLIEiJ_G0024405) #18	Foxa2 (MGP_CAROLIEiJ_G0024404) #19	Pax1 (MGP_CAROLIEiJ_G0024403) #21	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #22	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #23	Xrn2 (MGP_CAROLIEiJ_G0024400) #24	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398) #25	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #27	Insm1 (MGP_CAROLIEiJ_G0024396) #28	Cfap61 (MGP_CAROLIEiJ_G0024395) #29	Crnkl1 (MGP_CAROLIEiJ_G0024394) #30	Naa20 (MGP_CAROLIEiJ_G0024393) #31	Rin2 (MGP_CAROLIEiJ_G0024392) #32	MGP_CAROLIEiJ_G0024391 #33	Scp2d1 (MGP_CAROLIEiJ_G0024390)	Dtd1 (MGP_CAROLIEiJ_G0024389) #35	Smim26 (MGP_CAROLIEiJ_G0024388)	Sec23b (MGP_CAROLIEiJ_G0024387) #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c.c #36
Mouse	MODERN SPECIES	11	Cst9 (ENSMUSG00000027445)	Cst13 (ENSMUSG00000036924)	Cst8 (ENSMUSG00000027442) #9	Cst12 (ENSMUSG00000027443) #10	Cstdc1 (ENSMUSG00000027444) ##10	Cst11 (ENSMUSG00000036958) #11	Cstl1 (ENSMUSG00000055177) #12	Napb (ENSMUSG00000027438) #13	Gzf1 (ENSMUSG00000027439) #14	Nxt1 (ENSMUSG00000036992) #15	Cd93 (ENSMUSG00000027435) #17	Thbd (ENSMUSG00000074743)	Sstr4 (ENSMUSG00000037014) #18	Foxa2 (ENSMUSG00000037025) #19	Pax1 (ENSMUSG00000037034) #21	Nkx2-2 (ENSMUSG00000027434) #22	Nkx2-4 (ENSMUSG00000054160) #23	Xrn2 (ENSMUSG00000027433) #24	Kiz (ENSMUSG00000074749) #25	Ralgapa2 (ENSMUSG00000037110) #27	Insm1 (ENSMUSG00000068154) #28	Cfap61 (ENSMUSG00000037143) #29	Crnkl1 (ENSMUSG00000001767) #30	Naa20 (ENSMUSG00000002728) #31	Rin2 (ENSMUSG00000001768) #32	Slc24a3 (ENSMUSG00000063873) #33	Scp2d1 (ENSMUSG00000027431)	Dtd1 (ENSMUSG00000027430) #35	Smim26 (ENSMUSG00000074754)	Sec23b (ENSMUSG00000027429) #36	Rbbp9 (ENSMUSG00000027428)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000161877.c.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00970000195442	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.m #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c.c #36	ENSGT00390000014861
spretus	MODERN SPECIES	11	Cst9 (MGP_SPRETEiJ_G0025335)	Cst13 (MGP_SPRETEiJ_G0025334)	Cst8 (MGP_SPRETEiJ_G0025333) #9	Cst12 (MGP_SPRETEiJ_G0025332) #10	Cstdc1 (MGP_SPRETEiJ_G0025331) ##10	Cst11 (MGP_SPRETEiJ_G0025330) #11	Cstl1 (MGP_SPRETEiJ_G0025329) #12	Napb (MGP_SPRETEiJ_G0025328) #13	Gzf1 (MGP_SPRETEiJ_G0025327) #14	Nxt1 (MGP_SPRETEiJ_G0025326) #15	Cd93 (MGP_SPRETEiJ_G0025325) #17	Thbd (MGP_SPRETEiJ_G0025324)	Sstr4 (MGP_SPRETEiJ_G0025323) #18	Foxa2 (MGP_SPRETEiJ_G0025322) #19	Pax1 (MGP_SPRETEiJ_G0025321) #21	Nkx2-2 (MGP_SPRETEiJ_G0025320) #22	Nkx2-4 (MGP_SPRETEiJ_G0025319) #23	Xrn2 (MGP_SPRETEiJ_G0025318) #24	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316) #25	Ralgapa2 (MGP_SPRETEiJ_G0025315) #27	Insm1 (MGP_SPRETEiJ_G0025314) #28	Cfap61 (MGP_SPRETEiJ_G0025313) #29	Crnkl1 (MGP_SPRETEiJ_G0025312) #30	Naa20 (MGP_SPRETEiJ_G0025311) #31	Rin2 (MGP_SPRETEiJ_G0025310) #32	Slc24a3 (MGP_SPRETEiJ_G0025309) #33	Dtd1 (MGP_SPRETEiJ_G0025308) #35	Smim26 (MGP_SPRETEiJ_G0025307)	Sec23b (MGP_SPRETEiJ_G0025306) #36	Rbbp9 (MGP_SPRETEiJ_G0025305)
Steppe mouse	MODERN SPECIES	17														Pax1 (ENSMSIG00000015104) #21	ENSMSIG00000015077	ENSMSIG00000015060 #22	Nkx2-4 (ENSMSIG00000015047) #23	Xrn2 (ENSMSIG00000014908) #24	Kiz (ENSMSIG00000014848) #25	Ralgapa2 (ENSMSIG00000014327) #27	ENSMSIG00000014314 #28	Cfap61 (ENSMSIG00000014190) #29	Crnkl1 (ENSMSIG00000014156) #30	Naa20 (ENSMSIG00000014125) #31	Rin2 (ENSMSIG00000014047) #32	ENSMSIG00000014037	Slc24a3 (ENSMSIG00000013851) #33	ENSMSIG00000013826
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000161877.c.a	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000161877.c.a	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000161877.c.a	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00390000007696.e.a.a.a	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Marmotini_b	ANCESTRAL SPECIES	140	ENSGT00940000161877.c.a	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00390000007696.e.a.a.a
Squirrel	MODERN SPECIES	220	ENSSTOG00000004129	ENSSTOG00000020102	CST8 (ENSSTOG00000004122) #9	ENSSTOG00000024532 #10	ENSSTOG00000021841 ##10	CST11 (ENSSTOG00000004847) #11	CSTL1 (ENSSTOG00000024563) #12	NAPB (ENSSTOG00000022350) #13	ENSSTOG00000030626	GZF1 (ENSSTOG00000009820) #14	NXT1 (ENSSTOG00000026331) #15	CD93 (ENSSTOG00000024530) #17	SSTR4 (ENSSTOG00000021697) #18	FOXA2 (ENSSTOG00000020150) #19	PAX1 (ENSSTOG00000003000) #21	NKX2-2 (ENSSTOG00000021450) #22	XRN2 (ENSSTOG00000000589) #24	KIZ (ENSSTOG00000007449) #25
Arctic ground squirrel	MODERN SPECIES	114	CST11 (ENSUPAG00010009858) #11	CSTL1 (ENSUPAG00010009856) #12	ENSUPAG00010009855	ENSUPAG00010009850	NAPB (ENSUPAG00010009788) #13	GZF1 (ENSUPAG00010009780) #14	NXT1 (ENSUPAG00010009776) #15	ENSUPAG00010009772	ENSUPAG00010009759	CD93 (ENSUPAG00010009758) #17	THBD (ENSUPAG00010009753)	SSTR4 (ENSUPAG00010009751) #18	FOXA2 (ENSUPAG00010009738) #19	ENSUPAG00010009726	PAX1 (ENSUPAG00010009718) #21	NKX2-2 (ENSUPAG00010009710) #22	NKX2-4 (ENSUPAG00010009706) #23	XRN2 (ENSUPAG00010009667) #24	KIZ (ENSUPAG00010009237) #25	ENSUPAG00010009220
Alpin marmot	MODERN SPECIES		CST8 (ENSMMMG00000004504) #9	ENSMMMG00000004491 #10	ENSMMMG00000004483 ##10	CST11 (ENSMMMG00000004467) #11	CSTL1 (ENSMMMG00000004456) #12	ENSMMMG00000004433	NAPB (ENSMMMG00000004419) #13	GZF1 (ENSMMMG00000004407) #14	NXT1 (ENSMMMG00000004405) #15	ENSMMMG00000004398	CD93 (ENSMMMG00000004395) #17	THBD (ENSMMMG00000004391)	SSTR4 (ENSMMMG00000004385) #18	FOXA2 (ENSMMMG00000004350) #19	PAX1 (ENSMMMG00000004326) #21	NKX2-2 (ENSMMMG00000004284) #22	XRN2 (ENSMMMG00000004161) #24	KIZ (ENSMMMG00000003881) #25	ENSMMMG00000003871	RALGAPA2 (ENSMMMG00000003453) #27	ENSMMMG00000003417	ENSMMMG00000003408 #29	ENSMMMG00000003290 #29	CRNKL1 (ENSMMMG00000003244) #30	NAA20 (ENSMMMG00000003240) #31	RIN2 (ENSMMMG00000003172) #32	SLC24A3 (ENSMMMG00000003105) #33	SCP2D1 (ENSMMMG00000003079)	ENSMMMG00000003073	DTD1 (ENSMMMG00000003060) #35	SMIM26 (ENSMMMG00000003045)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005000133 #10	ENSSVLG00005000139 ##10	CST11 (ENSSVLG00005000162) #11	CSTL1 (ENSSVLG00005000168) #12	NAPB (ENSSVLG00005000227) #13	GZF1 (ENSSVLG00005000288) #14	ENSSVLG00005000304 #15	ENSSVLG00005000317 #15	CD93 (ENSSVLG00005000330) #17	THBD (ENSSVLG00005000349)	SSTR4 (ENSSVLG00005000359) #18	ENSSVLG00005000368	FOXA2 (ENSSVLG00005000389) #19	ENSSVLG00005000403	PAX1 (ENSSVLG00005000421) #21	NKX2-2 (ENSSVLG00005000441) #22	NKX2-4 (ENSSVLG00005000455) #23	XRN2 (ENSSVLG00005000470) #24	KIZ (ENSSVLG00005000513) #25	ENSSVLG00005000546	RALGAPA2 (ENSSVLG00005000611) #27	INSM1 (ENSSVLG00005000689) #28	CFAP61 (ENSSVLG00005000731) #29	ENSSVLG00005000777	CRNKL1 (ENSSVLG00005000792) #30	NAA20 (ENSSVLG00005000837) #31	RIN2 (ENSSVLG00005000879) #32	SLC24A3 (ENSSVLG00005000927) #33	SCP2D1 (ENSSVLG00005000950)	DTD1 (ENSSVLG00005000962) #35	ENSSVLG00005000978
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000154755.c.b	ENSGT00940000154755.c.a	ENSGT00940000161877.d	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987.n.a #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861	ENSGT00390000009679
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000154755.c.b.d	ENSGT00940000154755.c.a	ENSGT00940000161877.d	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987.n.a #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861	ENSGT00390000009679
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000154755.c.b.c	ENSGT00940000154755.c.b.d	ENSGT00940000154755.c.a	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987.n.a #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861	ENSGT00390000009679
Long-tailed chinchilla	MODERN SPECIES	122	SYNDIG1 (ENSCLAG00000012586)	ENSCLAG00000012454	ENSCLAG00000015899	ENSCLAG00000017066	ENSCLAG00000015212 #9	ENSCLAG00000015474 #10	ENSCLAG00000011384 #11	CSTL1 (ENSCLAG00000012446) #12	NAPB (ENSCLAG00000011540) #13	GZF1 (ENSCLAG00000014714) #14	NXT1 (ENSCLAG00000012493) #15	CD93 (ENSCLAG00000012062) #17	THBD (ENSCLAG00000011994)	FOXA2 (ENSCLAG00000014548) #19	PAX1 (ENSCLAG00000016362) #21	NKX2-2 (ENSCLAG00000016430) #22	XRN2 (ENSCLAG00000013419) #24	KIZ (ENSCLAG00000012565) #25	RALGAPA2 (ENSCLAG00000012502) #27	CFAP61 (ENSCLAG00000014155) #29	CRNKL1 (ENSCLAG00000013859) #30	NAA20 (ENSCLAG00000014313) #31	RIN2 (ENSCLAG00000015234) #32	SLC24A3 (ENSCLAG00000015547) #33	DTD1 (ENSCLAG00000015302) #35	SEC23B (ENSCLAG00000014924) #36	RBBP9 (ENSCLAG00000014851)	POLR3F (ENSCLAG00000016296)	DZANK1 (ENSCLAG00000013160)	ZNF133 (ENSCLAG00000015115)	KAT14 (ENSCLAG00000012590)
Degu	MODERN SPECIES	114	CST3 (ENSODEG00000012334)	ENSODEG00000010611	ENSODEG00000010448 #9	ENSODEG00000012595 #10	CST11 (ENSODEG00000013274) #11	CSTL1 (ENSODEG00000010719) #12	NAPB (ENSODEG00000011065) #13	GZF1 (ENSODEG00000013020) #14	NXT1 (ENSODEG00000019900) #15	CD93 (ENSODEG00000012518) #17	THBD (ENSODEG00000010709)	FOXA2 (ENSODEG00000011162) #19	PAX1 (ENSODEG00000012427) #21	ENSODEG00000019878	ENSODEG00000019885	NKX2-2 (ENSODEG00000012371) #22	ENSODEG00000012687	NKX2-4 (ENSODEG00000010842) #23	ENSODEG00000010745 #24	ENSODEG00000011188	KIZ (ENSODEG00000011491) #25	RALGAPA2 (ENSODEG00000011023) #27	INSM1 (ENSODEG00000020028) #28	ENSODEG00000011346	ENSODEG00000012124 #29	ENSODEG00000012675 #29	CRNKL1 (ENSODEG00000012175) #30	NAA20 (ENSODEG00000011704) #31	RIN2 (ENSODEG00000012000) #32	SLC24A3 (ENSODEG00000012016) #33	DTD1 (ENSODEG00000012785) #35
Guinea pig	MODERN SPECIES	8	ENSCPOG00000030984	ENSCPOG00000030716	ENSCPOG00000025294	ENSCPOG00000021926	CST8 (ENSCPOG00000005550) #9	ENSCPOG00000025993 #10	ENSCPOG00000003822 #11	CSTL1 (ENSCPOG00000008734) #12	NAPB (ENSCPOG00000039063) #13	GZF1 (ENSCPOG00000010790) #14	NXT1 (ENSCPOG00000008817) #15	CD93 (ENSCPOG00000010252) #17	THBD (ENSCPOG00000030575)	FOXA2 (ENSCPOG00000033370) #19	PAX1 (ENSCPOG00000002886) #21	NKX2-2 (ENSCPOG00000000408) #22	XRN2 (ENSCPOG00000009407) #24	KIZ (ENSCPOG00000005683) #25	RALGAPA2 (ENSCPOG00000001602) #27	ENSCPOG00000038064	ENSCPOG00000039658 #29	ENSCPOG00000001594 #29	CRNKL1 (ENSCPOG00000004418) #30	NAA20 (ENSCPOG00000001593) #31	RIN2 (ENSCPOG00000013179) #32	SLC24A3 (ENSCPOG00000011970) #33	DTD1 (ENSCPOG00000002416) #35	SEC23B (ENSCPOG00000002406) #36	RBBP9 (ENSCPOG00000036556)	POLR3F (ENSCPOG00000002400)	DZANK1 (ENSCPOG00000002397)
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000044421	ENSHGLG00000048121	ENSHGLG00000014789	ENSHGLG00000016940	ENSHGLG00000017168	ENSHGLG00000011435	CST8 (ENSHGLG00000011126) #9	ENSHGLG00000009572 #10	CST11 (ENSHGLG00000009307) #11	CSTL1 (ENSHGLG00000016858) #12	NAPB (ENSHGLG00000016842) #13	ENSHGLG00000037985 #14	ENSHGLG00000043445	FOXA2 (ENSHGLG00000048805) #19	PAX1 (ENSHGLG00000015866) #21	NKX2-2 (ENSHGLG00000048629) #22	NKX2-4 (ENSHGLG00000008824) #23	XRN2 (ENSHGLG00000014831) #24	KIZ (ENSHGLG00000014057) #25	ENSHGLG00000037468	ENSHGLG00000016477 #27	ENSHGLG00000047697	ENSHGLG00000013572 #29	ENSHGLG00000035992	ENSHGLG00000001178	ENSHGLG00000049828	ENSHGLG00000001156	CST7 (ENSHGLG00000001075)	APMAP (ENSHGLG00000045360)	ENSHGLG00000042834	ENSHGLG00000034236
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000159727 #22
Hedgehog	MODERN SPECIES	2505																NKX2-2 (ENSEEUG00000000616) #22
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Suina	ANCESTRAL SPECIES	9	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Pig	MODERN SPECIES	8	SYNDIG1 (ENSSSCG00000007130)	CST3 (ENSSSCG00000037360)	CST9L (ENSSSCG00000029289)	ENSSSCG00000007125	ENSSSCG00000007124 #9	ENSSSCG00000007123	CST11 (ENSSSCG00000007122) #11	CSTL1 (ENSSSCG00000007121) #12	NAPB (ENSSSCG00000031219) #13	GZF1 (ENSSSCG00000007117) #14	NXT1 (ENSSSCG00000007119) #15	CD93 (ENSSSCG00000007116) #17	THBD (ENSSSCG00000053422)	FOXA2 (ENSSSCG00000007114) #19	PAX1 (ENSSSCG00000007112) #21	NKX2-2 (ENSSSCG00000040017) #22	NKX2-4 (ENSSSCG00000007110) #23	XRN2 (ENSSSCG00000007109) #24	KIZ (ENSSSCG00000007108) #25	ENSSSCG00000048962	RALGAPA2 (ENSSSCG00000026506) #27	INSM1 (ENSSSCG00000062159) #28	CFAP61 (ENSSSCG00000038858) #29	CRNKL1 (ENSSSCG00000038587) #30	NAA20 (ENSSSCG00000028132) #31	ENSSSCG00000028004 #32	SLC24A3 (ENSSSCG00000007100) #33	SCP2D1 (ENSSSCG00000007099)	DTD1 (ENSSSCG00000007098) #35	SMIM26 (ENSSSCG00000025589)	SEC23B (ENSSSCG00000007097) #36
Chacoan peccary	MODERN SPECIES	801	SYNDIG1 (ENSCWAG00000016959)	CST3 (ENSCWAG00000016979)	ENSCWAG00000017004	ENSCWAG00000017060	CST8 (ENSCWAG00000017086) #9	ENSCWAG00000017127	CST11 (ENSCWAG00000017158) #11	CSTL1 (ENSCWAG00000017189) #12	NAPB (ENSCWAG00000017225) #13	GZF1 (ENSCWAG00000017910) #14	NXT1 (ENSCWAG00000017956) #15	CD93 (ENSCWAG00000017965) #17	THBD (ENSCWAG00000017996)	FOXA2 (ENSCWAG00000007985) #19	PAX1 (ENSCWAG00000008052) #21	NKX2-2 (ENSCWAG00000008122) #22	NKX2-4 (ENSCWAG00000008162) #23	XRN2 (ENSCWAG00000008201) #24	KIZ (ENSCWAG00000008351) #25	RALGAPA2 (ENSCWAG00000008863) #27	INSM1 (ENSCWAG00000009223) #28	CFAP61 (ENSCWAG00000009261) #29	CRNKL1 (ENSCWAG00000009575) #30	NAA20 (ENSCWAG00000009645) #31	ENSCWAG00000009830 #32	SLC24A3 (ENSCWAG00000009885) #33	SCP2D1 (ENSCWAG00000010002)	DTD1 (ENSCWAG00000010021) #35	SMIM26 (ENSCWAG00000010058)	SEC23B (ENSCWAG00000010080) #36	RBBP9 (ENSCWAG00000010152)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861	ENSGT00390000009679	ENSGT00390000000549
Arabian camel	MODERN SPECIES	10	ENSCDRG00005019533	ENSCDRG00005019539	ENSCDRG00005019553	CST8 (ENSCDRG00005019565) #9	ENSCDRG00005019579	ENSCDRG00005019599 ##10	ENSCDRG00005019617 #11	CSTL1 (ENSCDRG00005019624) #12	ENSCDRG00005019640 #13	GZF1 (ENSCDRG00005019674) #14	ENSCDRG00005019685 #15	CD93 (ENSCDRG00005019688) #17	ENSCDRG00005019694	FOXA2 (ENSCDRG00005019700) #19	PAX1 (ENSCDRG00005019717) #21	NKX2-2 (ENSCDRG00005019726) #22	XRN2 (ENSCDRG00005019738) #24	KIZ (ENSCDRG00005019794) #25	ENSCDRG00005020052 #27	ENSCDRG00005020129 #27	CFAP61 (ENSCDRG00005020211) #29	CRNKL1 (ENSCDRG00005020237) #30	NAA20 (ENSCDRG00005020249) #31	RIN2 (ENSCDRG00005020269) #32	SLC24A3 (ENSCDRG00005020283) #33	SCP2D1 (ENSCDRG00005020314)	DTD1 (ENSCDRG00005003474) #35	SMIM26 (ENSCDRG00005003504)	SEC23B (ENSCDRG00005003558) #36	RBBP9 (ENSCDRG00005003649)	POLR3F (ENSCDRG00005003691)
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000161877.i	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Blue whale	MODERN SPECIES	6	ENSBMSG00010012402	CST8 (ENSBMSG00010012422) #9	ENSBMSG00010012475	ENSBMSG00010012491 ##10	CST11 (ENSBMSG00010012502) #11	CSTL1 (ENSBMSG00010012521) #12	NAPB (ENSBMSG00010012544) #13	ENSBMSG00010012568 #14	ENSBMSG00010012580 #14	NXT1 (ENSBMSG00010012589) #15	CD93 (ENSBMSG00010012595) #17	THBD (ENSBMSG00010012612)	SSTR4 (ENSBMSG00010013828) #18	FOXA2 (ENSBMSG00010013859) #19	PAX1 (ENSBMSG00010013891) #21	NKX2-2 (ENSBMSG00010013921) #22	NKX2-4 (ENSBMSG00010013938) #23	XRN2 (ENSBMSG00010014058) #24	KIZ (ENSBMSG00010014281) #25	RALGAPA2 (ENSBMSG00010014396) #27	INSM1 (ENSBMSG00010014572) #28	CFAP61 (ENSBMSG00010014638) #29	CRNKL1 (ENSBMSG00010014711) #30	NAA20 (ENSBMSG00010014762) #31	RIN2 (ENSBMSG00010014833) #32	SLC24A3 (ENSBMSG00010014883) #33	DTD1 (ENSBMSG00010014971) #35	SMIM26 (ENSBMSG00010015007)	SEC23B (ENSBMSG00010015074) #36	RBBP9 (ENSBMSG00010015177)	POLR3F (ENSBMSG00010015197)
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Sperm whale	MODERN SPECIES	5	APMAP (ENSPCTG00005009088)	CST7 (ENSPCTG00005009166)	ENSPCTG00005009228	ENSPCTG00005009273 #13	CSTL1 (ENSPCTG00005009306) #12	CST11 (ENSPCTG00005009381) #11	ENSPCTG00005009442 ##10	ENSPCTG00005009487	ENSPCTG00005009530	ENSPCTG00005009585	CST3 (ENSPCTG00005009637)	CD93 (ENSPCTG00005009671) #17	SSTR4 (ENSPCTG00005009716) #18	FOXA2 (ENSPCTG00005009780) #19	PAX1 (ENSPCTG00005009858) #21	NKX2-2 (ENSPCTG00005009931) #22	NKX2-4 (ENSPCTG00005009959) #23	XRN2 (ENSPCTG00005010006) #24	KIZ (ENSPCTG00005010162) #25	RALGAPA2 (ENSPCTG00005010848) #27	INSM1 (ENSPCTG00005011042) #28	CFAP61 (ENSPCTG00005011086) #29	CRNKL1 (ENSPCTG00005011230) #30	NAA20 (ENSPCTG00005011278) #31	ENSPCTG00005011375 #32	SLC24A3 (ENSPCTG00005011433) #33	SCP2D1 (ENSPCTG00005011622)	DTD1 (ENSPCTG00005011639) #35	SMIM26 (ENSPCTG00005011687)	SEC23B (ENSPCTG00005011745) #36	RBBP9 (ENSPCTG00005011839)
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Dolphin	MODERN SPECIES	2997																NKX2-2 (ENSTTRG00000009146) #22	XRN2 (ENSTTRG00000009087) #24	KIZ (ENSTTRG00000009024) #25
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b
Vaquita	MODERN SPECIES	6	ACSS1 (ENSPSNG00000010625)	APMAP (ENSPSNG00000010757)	CST7 (ENSPSNG00000010836)	SYNDIG1 (ENSPSNG00000010897)	CST3 (ENSPSNG00000010957)	ENSPSNG00000011009	ENSPSNG00000011147	ENSPSNG00000011208 #13	GZF1 (ENSPSNG00000011314) #14	NXT1 (ENSPSNG00000011355) #15	CD93 (ENSPSNG00000011407) #17	THBD (ENSPSNG00000011441)	SSTR4 (ENSPSNG00000011467) #18	FOXA2 (ENSPSNG00000004696) #19	PAX1 (ENSPSNG00000004773) #21	NKX2-2 (ENSPSNG00000004832) #22	NKX2-4 (ENSPSNG00000004868) #23	XRN2 (ENSPSNG00000004918) #24	KIZ (ENSPSNG00000005041) #25	ENSPSNG00000005168 #27	ENSPSNG00000005197 #27	INSM1 (ENSPSNG00000005223) #28	ENSPSNG00000005235	ENSPSNG00000005250 #29	ENSPSNG00000005292 #29	BLCAP (ENSPSNG00000005346)	ENSPSNG00000005363	CRNKL1 (ENSPSNG00000005386) #30	NAA20 (ENSPSNG00000005428) #31	RIN2 (ENSPSNG00000005508) #32	SLC24A3 (ENSPSNG00000005554) #33
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35
Narwhal	MODERN SPECIES	299	CST7 (ENSMMNG00015013746)	SYNDIG1 (ENSMMNG00015013754)	CST3 (ENSMMNG00015013767)	ENSMMNG00015013782	ENSMMNG00015013807	CST11 (ENSMMNG00015013816) #11	CSTL1 (ENSMMNG00015013827) #12	ENSMMNG00015013840 #13	GZF1 (ENSMMNG00015013857) #14	NXT1 (ENSMMNG00015013866) #15	CD93 (ENSMMNG00015013869) #17	THBD (ENSMMNG00015013881)	SSTR4 (ENSMMNG00015013888) #18	FOXA2 (ENSMMNG00015013909) #19	PAX1 (ENSMMNG00015013924) #21	NKX2-2 (ENSMMNG00015013937) #22	NKX2-4 (ENSMMNG00015013943) #23	XRN2 (ENSMMNG00015013954) #24	KIZ (ENSMMNG00015014032) #25	RALGAPA2 (ENSMMNG00015014137) #27	INSM1 (ENSMMNG00015014194) #28	CFAP61 (ENSMMNG00015014206) #29	ENSMMNG00015014237	ENSMMNG00015014247	CRNKL1 (ENSMMNG00015014256) #30	NAA20 (ENSMMNG00015014274) #31	RIN2 (ENSMMNG00015014306) #32	SLC24A3 (ENSMMNG00015014333) #33	SCP2D1 (ENSMMNG00015014357)	DTD1 (ENSMMNG00015014368) #35	SMIM26 (ENSMMNG00015014382)
Beluga whale	MODERN SPECIES	48	SYNDIG1 (ENSDLEG00000004982)	CST3 (ENSDLEG00000004985)	ENSDLEG00000005018	ENSDLEG00000005035	ENSDLEG00000005044 ##10	CST11 (ENSDLEG00000005067) #11	CSTL1 (ENSDLEG00000005075) #12	ENSDLEG00000005080 #13	GZF1 (ENSDLEG00000005091) #14	NXT1 (ENSDLEG00000005096) #15	CD93 (ENSDLEG00000005100) #17	THBD (ENSDLEG00000005104)	SSTR4 (ENSDLEG00000005108) #18	FOXA2 (ENSDLEG00000005115) #19	PAX1 (ENSDLEG00000005123) #21	NKX2-2 (ENSDLEG00000005132) #22	NKX2-4 (ENSDLEG00000005154) #23	XRN2 (ENSDLEG00000005166) #24	KIZ (ENSDLEG00000005207) #25	RALGAPA2 (ENSDLEG00000005252) #27	CFAP61 (ENSDLEG00000005301) #29	ENSDLEG00000005319	ENSDLEG00000005324	CRNKL1 (ENSDLEG00000005333) #30	NAA20 (ENSDLEG00000005370) #31	RIN2 (ENSDLEG00000005378) #32	SLC24A3 (ENSDLEG00000005408) #33	ENSDLEG00000005476	SCP2D1 (ENSDLEG00000005480)	DTD1 (ENSDLEG00000005506) #35	SMIM26 (ENSDLEG00000005510)
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000023900 #9	ENSCHYG00000023874	ENSCHYG00000023860 ##10	ENSCHYG00000023824 #11	ENSCHYG00000023804 #12	NAPB (ENSCHYG00000023659) #13	GZF1 (ENSCHYG00000023598) #14	NXT1 (ENSCHYG00000023576) #15	CD93 (ENSCHYG00000023556) #17	THBD (ENSCHYG00000023542)	ENSCHYG00000023501	ENSCHYG00000023462	FOXA2 (ENSCHYG00000023420) #19	PAX1 (ENSCHYG00000023364) #21	ENSCHYG00000023344	NKX2-2 (ENSCHYG00000023304) #22	NKX2-4 (ENSCHYG00000023282) #23	XRN2 (ENSCHYG00000022819) #24	ENSCHYG00000022761	ENSCHYG00000022734	KIZ (ENSCHYG00000022176) #25	RALGAPA2 (ENSCHYG00000021147) #27	INSM1 (ENSCHYG00000021030) #28	CFAP61 (ENSCHYG00000020914) #29	CRNKL1 (ENSCHYG00000020782) #30	NAA20 (ENSCHYG00000020635) #31	RIN2 (ENSCHYG00000020319) #32	ENSCHYG00000020275	SLC24A3 (ENSCHYG00000020129) #33	SCP2D1 (ENSCHYG00000020102)	DTD1 (ENSCHYG00000019989) #35
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Siberian musk deer	MODERN SPECIES	1194	CST3 (ENSMMSG00000018564)	ENSMMSG00000018584	ENSMMSG00000018603	CST8 (ENSMMSG00000018626) #9	ENSMMSG00000018653	ENSMMSG00000018676 ##10	ENSMMSG00000018712 #11	CSTL1 (ENSMMSG00000018731) #12	NAPB (ENSMMSG00000018763) #13	GZF1 (ENSMMSG00000018836) #14	NXT1 (ENSMMSG00000018866) #15	CD93 (ENSMMSG00000018871) #17	THBD (ENSMMSG00000018897)	FOXA2 (ENSMMSG00000018910) #19	PAX1 (ENSMMSG00000018943) #21	NKX2-2 (ENSMMSG00000018973) #22	ENSMMSG00000018994	ENSMMSG00000019016	NKX2-4 (ENSMMSG00000019032) #23	XRN2 (ENSMMSG00000019064) #24	KIZ (ENSMMSG00000019151) #25	RALGAPA2 (ENSMMSG00000019313) #27	INSM1 (ENSMMSG00000019511) #28	ENSMMSG00000019522	ENSMMSG00000019535 #29	ENSMMSG00000019564 #29	CRNKL1 (ENSMMSG00000019594) #30	NAA20 (ENSMMSG00000019613) #31	RIN2 (ENSMMSG00000019665) #32	SLC24A3 (ENSMMSG00000019736) #33	SCP2D1 (ENSMMSG00000019818)
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00950000183014.f.a.h.u.a.a.b.a	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155114.wb.b	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT00390000001138.a.g	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00860000134050	ENSGT00940000153431.b.b #35	ENSGT00390000006916.c #36
Rambouillet Sheep	MODERN SPECIES	4	ENSOARG00020005253	ENSOARG00020005233 #9	ENSOARG00020005223	ENSOARG00020005206 ##10	ENSOARG00020005178 #11	CSTL1 (ENSOARG00020005157) #12	NAPB (ENSOARG00020004860) #13	GZF1 (ENSOARG00020004766) #14	NXT1 (ENSOARG00020004744) #15	ENSOARG00020004719	CD93 (ENSOARG00020004706) #17	ENSOARG00020004667	FOXA2 (ENSOARG00020004643) #19	ENSOARG00020004631	PAX1 (ENSOARG00020004579) #21	NKX2-2 (ENSOARG00020004554) #22	NKX2-4 (ENSOARG00020004533) #23	XRN2 (ENSOARG00020004498) #24	KIZ (ENSOARG00020004321) #25	RALGAPA2 (ENSOARG00020003837) #27	INSM1 (ENSOARG00020003800) #28	CFAP61 (ENSOARG00020003632) #29	CRNKL1 (ENSOARG00020003543) #30	NAA20 (ENSOARG00020003499) #31	RIN2 (ENSOARG00020003240) #32	ENSOARG00020023127	SLC24A3 (ENSOARG00020023051) #33	SCP2D1 (ENSOARG00020023032)	ENSOARG00020023011 #35	SMIM26 (ENSOARG00020022969)	SEC23B (ENSOARG00020022920) #36
Goat	MODERN SPECIES	4	ENSCHIG00000022173	ENSCHIG00000009930	ENSCHIG00000021829	ENSCHIG00000025947 #9	ENSCHIG00000017766	ENSCHIG00000003642 ##10	ENSCHIG00000021813 #11	NAPB (ENSCHIG00000020249) #13	GZF1 (ENSCHIG00000008882) #14	ENSCHIG00000021979	CD93 (ENSCHIG00000009092) #17	THBD (ENSCHIG00000010975)	ENSCHIG00000022438	FOXA2 (ENSCHIG00000013879) #19	PAX1 (ENSCHIG00000025250) #21	NKX2-2 (ENSCHIG00000025252) #22	NKX2-4 (ENSCHIG00000017092) #23	ENSCHIG00000009213	XRN2 (ENSCHIG00000006921) #24	KIZ (ENSCHIG00000020496) #25	ENSCHIG00000001410	ENSCHIG00000005268	RALGAPA2 (ENSCHIG00000023081) #27	INSM1 (ENSCHIG00000002944) #28	CFAP61 (ENSCHIG00000022048) #29	CRNKL1 (ENSCHIG00000013171) #30	NAA20 (ENSCHIG00000021922) #31	RIN2 (ENSCHIG00000009997) #32	ENSCHIG00000020114	ENSCHIG00000008840	SLC24A3 (ENSCHIG00000010684) #33
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT00390000001138.a.g.b	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Bos	ANCESTRAL SPECIES	22	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554.jb #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137.d #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B.d #32	ENSGT00390000001138.a.g.b	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554.jb #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137.d #21	ENSGT00940000153362.a.bb.b.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B.d #32	ENSGT00390000001138.a.g.b	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00950000183210.d.a.c.a.a.b.f.a.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Cow	MODERN SPECIES	4	SYNDIG1 (ENSBTAG00000040147)	CST3 (ENSBTAG00000000598)	ENSBTAG00000032687	ENSBTAG00000015949	CST8 (ENSBTAG00000032694) #9	MGC133636 (ENSBTAG00000013416) ##10	ENSBTAG00000027420	NAPB (ENSBTAG00000032704) #13	GZF1 (ENSBTAG00000008908) #14	NXT1 (ENSBTAG00000004993) #15	CD93 (ENSBTAG00000004207) #17	THBD (ENSBTAG00000048591)	FOXA2 (ENSBTAG00000012407) #19	PAX1 (ENSBTAG00000006742) #21	ENSBTAG00000035643	NKX2-2 (ENSBTAG00000010277) #22	NKX2-4 (ENSBTAG00000011312) #23	XRN2 (ENSBTAG00000011304) #24	KIZ (ENSBTAG00000020988) #25	RALGAPA2 (ENSBTAG00000014178) #27	CFAP61 (ENSBTAG00000009291) #29	CRNKL1 (ENSBTAG00000008472) #30	NAA20 (ENSBTAG00000001144) #31	RIN2 (ENSBTAG00000020382) #32	ENSBTAG00000032893	SLC24A3 (ENSBTAG00000011882) #33	SCP2D1 (ENSBTAG00000005202)	ENSBTAG00000012276	DTD1 (ENSBTAG00000008964) #35	SMIM26 (ENSBTAG00000051249)	SEC23B (ENSBTAG00000018295) #36
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000161877.j	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554.jb #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137.d #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B.d #32	ENSGT00960000190537	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00950000183210.d.a.c.a.a.b.f.a.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Wild yak	MODERN SPECIES	194											CD93 (ENSBMUG00000003082) #17	ENSBMUG00000003102	FOXA2 (ENSBMUG00000003127) #19	PAX1 (ENSBMUG00000003140) #21	ENSBMUG00000003171	NKX2-2 (ENSBMUG00000003181) #22	XRN2 (ENSBMUG00000003295) #24	KIZ (ENSBMUG00000003411) #25	RALGAPA2 (ENSBMUG00000003599) #27	CFAP61 (ENSBMUG00000003762) #29	CRNKL1 (ENSBMUG00000003809) #30	NAA20 (ENSBMUG00000003835) #31	RIN2 (ENSBMUG00000003883) #32	ENSBMUG00000003910	SLC24A3 (ENSBMUG00000003930) #33	SCP2D1 (ENSBMUG00000003945)	ENSBMUG00000003967	DTD1 (ENSBMUG00000004000) #35	SMIM26 (ENSBMUG00000004015)	SEC23B (ENSBMUG00000004165) #36	RBBP9 (ENSBMUG00000004226)
Domestic yak	MODERN SPECIES	3	ENSBGRG00000007655	ENSBGRG00000007612 ##10	ENSBGRG00000007520 #11	CSTL1 (ENSBGRG00000007456) #12	NAPB (ENSBGRG00000007201) #13	ENSBGRG00000007150 #14	ENSBGRG00000007097 #14	NXT1 (ENSBGRG00000007076) #15	ENSBGRG00000007043	CD93 (ENSBGRG00000006986) #17	THBD (ENSBGRG00000006963)	FOXA2 (ENSBGRG00000006927) #19	PAX1 (ENSBGRG00000006855) #21	ENSBGRG00000006824 #21	ENSBGRG00000006808	NKX2-2 (ENSBGRG00000006790) #22	NKX2-4 (ENSBGRG00000006760) #23	XRN2 (ENSBGRG00000006633) #24	KIZ (ENSBGRG00000006486) #25	ENSBGRG00000006333 #27	ENSBGRG00000006247 #27	INSM1 (ENSBGRG00000006219) #28	CFAP61 (ENSBGRG00000006111) #29	CRNKL1 (ENSBGRG00000006006) #30	NAA20 (ENSBGRG00000005893) #31	ENSBGRG00000005870 #32	ENSBGRG00000005832 #32	SLC24A3 (ENSBGRG00000005785) #33	ENSBGRG00000005768	DTD1 (ENSBGRG00000005731) #35	SMIM26 (ENSBGRG00000005700)
American bison	MODERN SPECIES	2997	CST3 (ENSBBBG00000005938)	ENSBBBG00000022502	ENSBBBG00000022506	CST8 (ENSBBBG00000022516) #9	ENSBBBG00000005942	ENSBBBG00000022528 ##10	ENSBBBG00000022535 #11	CSTL1 (ENSBBBG00000022543) #12	NAPB (ENSBBBG00000022632) #13	GZF1 (ENSBBBG00000022655) #14	CD93 (ENSBBBG00000005967) #17	THBD (ENSBBBG00000022684)	FOXA2 (ENSBBBG00000022700) #19	PAX1 (ENSBBBG00000022763) #21	ENSBBBG00000022780	ENSBBBG00000022786 #22	XRN2 (ENSBBBG00000022814) #24	KIZ (ENSBBBG00000022908) #25	RALGAPA2 (ENSBBBG00000022984) #27	ENSBBBG00000022996 #28	CFAP61 (ENSBBBG00000006046) #29	CRNKL1 (ENSBBBG00000008793) #30	NAA20 (ENSBBBG00000023097) #31	RIN2 (ENSBBBG00000023140) #32	ENSBBBG00000023147	SLC24A3 (ENSBBBG00000000461) #33	SCP2D1 (ENSBBBG00000000425)	DTD1 (ENSBBBG00000000410) #35	SMIM26 (ENSBBBG00000000399)	SEC23B (ENSBBBG00000023236) #36	RBBP9 (ENSBBBG00000006080)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Equus	ANCESTRAL SPECIES	8	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00510000047812.l	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861
Horse	MODERN SPECIES	14	SYNDIG1 (ENSECAG00000006421)	CST3 (ENSECAG00000038893)	ENSECAG00000045045	CST9L (ENSECAG00000010654)	CST8 (ENSECAG00000029932) #9	ENSECAG00000014988 ##10	CST11 (ENSECAG00000016342) #11	CSTL1 (ENSECAG00000019672) #12	NAPB (ENSECAG00000022016) #13	GZF1 (ENSECAG00000011343) #14	NXT1 (ENSECAG00000035032) #15	CD93 (ENSECAG00000016324) #17	THBD (ENSECAG00000005241)	FOXA2 (ENSECAG00000032004) #19	PAX1 (ENSECAG00000016945) #21	NKX2-2 (ENSECAG00000018977) #22	NKX2-4 (ENSECAG00000037105) #23	XRN2 (ENSECAG00000018988) #24	KIZ (ENSECAG00000016626) #25	ENSECAG00000036437	RALGAPA2 (ENSECAG00000019950) #27	INSM1 (ENSECAG00000037552) #28	CFAP61 (ENSECAG00000004364) #29	CRNKL1 (ENSECAG00000022215) #30	NAA20 (ENSECAG00000012609) #31	RIN2 (ENSECAG00000015381) #32	SLC24A3 (ENSECAG00000019334) #33	DTD1 (ENSECAG00000025075) #35	SEC23B (ENSECAG00000025087) #36	RBBP9 (ENSECAG00000001333)	POLR3F (ENSECAG00000009920)
Donkey	MODERN SPECIES	6	ENSEASG00005002598	ENSEASG00005027176	ENSEASG00005025391	CST8 (ENSEASG00005030555) #9	ENSEASG00005031840	CST11 (ENSEASG00005002576) #11	CSTL1 (ENSEASG00005002572) #12	NAPB (ENSEASG00005002564) #13	GZF1 (ENSEASG00005002557) #14	NXT1 (ENSEASG00005033641) #15	CD93 (ENSEASG00005002547) #17	THBD (ENSEASG00005027531)	SSTR4 (ENSEASG00005002540) #18	FOXA2 (ENSEASG00005002535) #19	PAX1 (ENSEASG00005002521) #21	NKX2-2 (ENSEASG00005038540) #22	NKX2-4 (ENSEASG00005002501) #23	XRN2 (ENSEASG00005002484) #24	KIZ (ENSEASG00005002467) #25	ENSEASG00005002454	RALGAPA2 (ENSEASG00005002224) #27	INSM1 (ENSEASG00005002118) #28	CFAP61 (ENSEASG00005002079) #29	CRNKL1 (ENSEASG00005002072) #30	NAA20 (ENSEASG00005002069) #31	RIN2 (ENSEASG00005002067) #32	SLC24A3 (ENSEASG00005002055) #33	SCP2D1 (ENSEASG00005037273)	DTD1 (ENSEASG00005002041) #35	SEC23B (ENSEASG00005002036) #36	RBBP9 (ENSEASG00005023627)
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Microbat	MODERN SPECIES	1142															PAX1 (ENSMLUG00000014710) #21	NKX2-2 (ENSMLUG00000009371) #22	XRN2 (ENSMLUG00000001536) #24	KIZ (ENSMLUG00000001531) #25	RALGAPA2 (ENSMLUG00000016548) #27	CFAP61 (ENSMLUG00000016527) #29	CRNKL1 (ENSMLUG00000016513) #30	NAA20 (ENSMLUG00000016508) #31	RIN2 (ENSMLUG00000016498) #32	SLC24A3 (ENSMLUG00000005788) #33
Greater horseshoe bat	MODERN SPECIES	15	CST9L (ENSRFEG00010011055)	ENSRFEG00010011001	ENSRFEG00010010952	CST11 (ENSRFEG00010010901) #11	CSTL1 (ENSRFEG00010010843) #12	NAPB (ENSRFEG00010010719) #13	GZF1 (ENSRFEG00010010618) #14	NXT1 (ENSRFEG00010010600) #15	CD93 (ENSRFEG00010010553) #17	THBD (ENSRFEG00010010533)	ENSRFEG00010010499	ENSRFEG00010010431	FOXA2 (ENSRFEG00010010354) #19	ENSRFEG00010010271	PAX1 (ENSRFEG00010010205) #21	NKX2-2 (ENSRFEG00010010185) #22	NKX2-4 (ENSRFEG00010010146) #23	XRN2 (ENSRFEG00010010058) #24	ENSRFEG00010010021	KIZ (ENSRFEG00010009832) #25	ENSRFEG00010009788	RALGAPA2 (ENSRFEG00010009655) #27	INSM1 (ENSRFEG00010009617) #28	CFAP61 (ENSRFEG00010009533) #29	CRNKL1 (ENSRFEG00010009485) #30	NAA20 (ENSRFEG00010009410) #31	RIN2 (ENSRFEG00010009330) #32	ENSRFEG00010009294	SLC24A3 (ENSRFEG00010009266) #33	ENSRFEG00010009202	DTD1 (ENSRFEG00010009168) #35
Carnivora	ANCESTRAL SPECIES	20	ENSGT00940000161877.n	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000163249	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000163249	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Tiger	MODERN SPECIES	535	ENSPTIG00000007645 #7	ENSPTIG00000007325 #7	CST9L (ENSPTIG00000007266)	ENSPTIG00000007155	CST8 (ENSPTIG00000006377) #9	ENSPTIG00000005641	ENSPTIG00000005550 ##10	CST11 (ENSPTIG00000003091) #11	ENSPTIG00000001355	NAPB (ENSPTIG00000019947) #13	GZF1 (ENSPTIG00000019328) #14	NXT1 (ENSPTIG00000003788) #15	CD93 (ENSPTIG00000018580) #17	SSTR4 (ENSPTIG00000003769) #18	PAX1 (ENSPTIG00000017141) #21	NKX2-2 (ENSPTIG00000016807) #22	XRN2 (ENSPTIG00000015683) #24	KIZ (ENSPTIG00000015123) #25	RALGAPA2 (ENSPTIG00000012682) #27	CFAP61 (ENSPTIG00000009217) #29	CRNKL1 (ENSPTIG00000007393) #30	NAA20 (ENSPTIG00000006328) #31	RIN2 (ENSPTIG00000003100) #32	SLC24A3 (ENSPTIG00000021465) #33	SCP2D1 (ENSPTIG00000002789)	DTD1 (ENSPTIG00000020971) #35	SEC23B (ENSPTIG00000020593) #36	RBBP9 (ENSPTIG00000020464)	POLR3F (ENSPTIG00000020292)	DZANK1 (ENSPTIG00000017259)	ZNF133 (ENSPTIG00000016359)
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000163249	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046.k #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
leopard	MODERN SPECIES	39	ENSPPRG00000015946	ENSPPRG00000015501	CST8 (ENSPPRG00000015009) #9	ENSPPRG00000014635	ENSPPRG00000013202 ##10	CST11 (ENSPPRG00000011764) #11	ENSPPRG00000011394	NAPB (ENSPPRG00000010805) #13	GZF1 (ENSPPRG00000010040) #14	NXT1 (ENSPPRG00000021392) #15	CD93 (ENSPPRG00000009570) #17	THBD (ENSPPRG00000021378)	SSTR4 (ENSPPRG00000021367) #18	FOXA2 (ENSPPRG00000009206) #19	PAX1 (ENSPPRG00000009070) #21	NKX2-2 (ENSPPRG00000008916) #22	NKX2-4 (ENSPPRG00000008761) #23	XRN2 (ENSPPRG00000008732) #24	KIZ (ENSPPRG00000007745) #25	RALGAPA2 (ENSPPRG00000006401) #27	INSM1 (ENSPPRG00000021271) #28	CFAP61 (ENSPPRG00000004321) #29	CRNKL1 (ENSPPRG00000001955) #30	ENSPPRG00000001197 #31	ENSPPRG00000000577 #32	SLC24A3 (ENSPPRG00000022720) #33	SCP2D1 (ENSPPRG00000021046)	DTD1 (ENSPPRG00000023943) #35	SEC23B (ENSPPRG00000024318) #36	RBBP9 (ENSPPRG00000024506)	POLR3F (ENSPPRG00000024604)
lion	MODERN SPECIES	3	CST9L (ENSPLOG00000000670)	ENSPLOG00000000686	CST8 (ENSPLOG00000000695) #9	ENSPLOG00000000715	ENSPLOG00000000735 ##10	CST11 (ENSPLOG00000000758) #11	CSTL1 (ENSPLOG00000000776) #12	NAPB (ENSPLOG00000000809) #13	GZF1 (ENSPLOG00000000839) #14	NXT1 (ENSPLOG00000000844) #15	CD93 (ENSPLOG00000000855) #17	THBD (ENSPLOG00000000869)	SSTR4 (ENSPLOG00000000946) #18	FOXA2 (ENSPLOG00000000959) #19	PAX1 (ENSPLOG00000000971) #21	NKX2-2 (ENSPLOG00000000985) #22	NKX2-4 (ENSPLOG00000001002) #23	XRN2 (ENSPLOG00000001042) #24	KIZ (ENSPLOG00000001155) #25	RALGAPA2 (ENSPLOG00000001266) #27	INSM1 (ENSPLOG00000001312) #28	CFAP61 (ENSPLOG00000001356) #29	CRNKL1 (ENSPLOG00000001416) #30	NAA20 (ENSPLOG00000001447) #31	RIN2 (ENSPLOG00000001490) #32	SLC24A3 (ENSPLOG00000001538) #33	DTD1 (ENSPLOG00000001574) #35	SMIM26 (ENSPLOG00000001583)	SEC23B (ENSPLOG00000001608) #36	RBBP9 (ENSPLOG00000001658)	POLR3F (ENSPLOG00000001687)
Cat	MODERN SPECIES	2	ENSFCAG00000027887	ENSFCAG00000023071	CST8 (ENSFCAG00000023255) #9	ENSFCAG00000042989	ENSFCAG00000026179 ##10	CST11 (ENSFCAG00000003949) #11	CSTL1 (ENSFCAG00000041684) #12	NAPB (ENSFCAG00000037279) #13	GZF1 (ENSFCAG00000006484) #14	NXT1 (ENSFCAG00000006482) #15	CD93 (ENSFCAG00000025238) #17	THBD (ENSFCAG00000011513)	SSTR4 (ENSFCAG00000022777) #18	FOXA2 (ENSFCAG00000012368) #19	PAX1 (ENSFCAG00000004293) #21	NKX2-2 (ENSFCAG00000008740) #22	NKX2-4 (ENSFCAG00000045261) #23	XRN2 (ENSFCAG00000007970) #24	KIZ (ENSFCAG00000007966) #25	RALGAPA2 (ENSFCAG00000028385) #27	INSM1 (ENSFCAG00000040680) #28	CFAP61 (ENSFCAG00000000715) #29	CRNKL1 (ENSFCAG00000000714) #30	NAA20 (ENSFCAG00000028113) #31	RIN2 (ENSFCAG00000014527) #32	SLC24A3 (ENSFCAG00000008015) #33	SCP2D1 (ENSFCAG00000003254)	ENSFCAG00000051916	DTD1 (ENSFCAG00000013835) #35	SMIM26 (ENSFCAG00000048664)	SEC23B (ENSFCAG00000013833) #36
Caniformia	ANCESTRAL SPECIES		ENSGT00940000161877.m	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Canidae	ANCESTRAL SPECIES	19			ENSGT00940000157363.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046.j.a #31	ENSGT00940000161804.d.a	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Red fox	MODERN SPECIES	40				ENSVVUG00000012055	ENSVVUG00000012058	ENSVVUG00000012060 #9	ENSVVUG00000012064	ENSVVUG00000012067	CST11 (ENSVVUG00000012069) #11	CSTL1 (ENSVVUG00000012073) #12	NAPB (ENSVVUG00000012075) #13	GZF1 (ENSVVUG00000012086) #14	NXT1 (ENSVVUG00000012091) #15	ENSVVUG00000012111	PAX1 (ENSVVUG00000012146) #21	NKX2-2 (ENSVVUG00000012163) #22	ENSVVUG00000012172 #23	XRN2 (ENSVVUG00000012178) #24	KIZ (ENSVVUG00000012190) #25	RALGAPA2 (ENSVVUG00000012242) #27	ENSVVUG00000012364	CFAP61 (ENSVVUG00000012388) #29	ENSVVUG00000012539	CRNKL1 (ENSVVUG00000012559) #30	NAA20 (ENSVVUG00000012582) #31	ENSVVUG00000012599	RIN2 (ENSVVUG00000012604) #32	SLC24A3 (ENSVVUG00000012656) #33	ENSVVUG00000012858	DTD1 (ENSVVUG00000012861) #35	SMIM26 (ENSVVUG00000012870)
Canis_lupus	ANCESTRAL SPECIES	13		ENSGT00940000157363.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT01100000263605.j	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046.j.a #31	ENSGT00940000161804.d.a	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Dingo	MODERN SPECIES	343	ENSCAFG00020027456	CST8 (ENSCAFG00020027457) #9	ENSCAFG00020027458	CST11 (ENSCAFG00020027459) #11	CSTL1 (ENSCAFG00020027460) #12	ENSCAFG00020027461 #13	ENSCAFG00020027463 #14	ENSCAFG00020027464 #14	ENSCAFG00020027465 #15	CD93 (ENSCAFG00020027467) #17	THBD (ENSCAFG00020027468)	ENSCAFG00020027470	ENSCAFG00020027471	FOXA2 (ENSCAFG00020027472) #19	PAX1 (ENSCAFG00020027475) #21	NKX2-2 (ENSCAFG00020027477) #22	NKX2-4 (ENSCAFG00020027478) #23	XRN2 (ENSCAFG00020027479) #24	KIZ (ENSCAFG00020027480) #25	RALGAPA2 (ENSCAFG00020027484) #27	CFAP61 (ENSCAFG00020027486) #29	ENSCAFG00020027487	CRNKL1 (ENSCAFG00020027488) #30	ENSCAFG00020027489 #31	ENSCAFG00020027490	RIN2 (ENSCAFG00020027491) #32	SLC24A3 (ENSCAFG00020027492) #33	SCP2D1 (ENSCAFG00020027495)	DTD1 (ENSCAFG00020027496) #35	SMIM26 (ENSCAFG00020027497)	SEC23B (ENSCAFG00020027498) #36
Dog	MODERN SPECIES	16	HUS1 (ENSCAFG00845026030)	ENSCAFG00845026576	ENSCAFG00845026609	CST8 (ENSCAFG00845026649) #9	ENSCAFG00845026671	CST11 (ENSCAFG00845026760) #11	CSTL1 (ENSCAFG00845026794) #12	NAPB (ENSCAFG00845026852) #13	GZF1 (ENSCAFG00845027001) #14	CD93 (ENSCAFG00845027134) #17	THBD (ENSCAFG00845027195)	ENSCAFG00845027219	ENSCAFG00845027242	FOXA2 (ENSCAFG00845027259) #19	PAX1 (ENSCAFG00845027290) #21	NKX2-2 (ENSCAFG00845027437) #22	NKX2-4 (ENSCAFG00845027483) #23	XRN2 (ENSCAFG00845027569) #24	KIZ (ENSCAFG00845028046) #25	RALGAPA2 (ENSCAFG00845028444) #27	CFAP61 (ENSCAFG00845028852) #29	ENSCAFG00845028933	CRNKL1 (ENSCAFG00845028961) #30	NAA20 (ENSCAFG00845029048) #31	ENSCAFG00845029111	RIN2 (ENSCAFG00845029255) #32	SLC24A3 (ENSCAFG00845029352) #33	SCP2D1 (ENSCAFG00845029392)	ENSCAFG00845029447 #35	ENSCAFG00845029520	SEC23B (ENSCAFG00845029542) #36
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000161877.m.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
Mustelinae	ANCESTRAL SPECIES	43	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050
American mink	MODERN SPECIES	460															PAX1 (ENSNVIG00000024342) #21	NKX2-2 (ENSNVIG00000024347) #22	NKX2-4 (ENSNVIG00000024348) #23	XRN2 (ENSNVIG00000024349) #24	KIZ (ENSNVIG00000024357) #25
Ferret	MODERN SPECIES	204	ENSMPUG00000001137	ENSMPUG00000001138	ENSMPUG00000001140	CST8 (ENSMPUG00000001143) #9	ENSMPUG00000001151	CST11 (ENSMPUG00000001154) #11	NAPB (ENSMPUG00000001158) #13	GZF1 (ENSMPUG00000001160) #14	NXT1 (ENSMPUG00000019260) #15	CD93 (ENSMPUG00000001163) #17	THBD (ENSMPUG00000019265)	SSTR4 (ENSMPUG00000019271) #18	FOXA2 (ENSMPUG00000001166) #19	ENSMPUG00000001167	PAX1 (ENSMPUG00000001187) #21	NKX2-2 (ENSMPUG00000001196) #22	XRN2 (ENSMPUG00000001198) #24	KIZ (ENSMPUG00000001201) #25	ENSMPUG00000019274	ENSMPUG00000001204	RALGAPA2 (ENSMPUG00000001210) #27	INSM1 (ENSMPUG00000001216) #28	CFAP61 (ENSMPUG00000001219) #29	CRNKL1 (ENSMPUG00000001226) #30	NAA20 (ENSMPUG00000001228) #31	RIN2 (ENSMPUG00000001230) #32	ENSMPUG00000001233	SLC24A3 (ENSMPUG00000001234) #33	ENSMPUG00000001236	SCP2D1 (ENSMPUG00000019276)	DTD1 (ENSMPUG00000001238) #35
Ursidae	ANCESTRAL SPECIES	14	ENSGT00940000161877.m.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861	ENSGT00390000009679
Giant Panda	MODERN SPECIES	4	ENSAMEG00000009914	CST8 (ENSAMEG00000009906) #9	ENSAMEG00000009904	CST11 (ENSAMEG00000009897) #11	CSTL1 (ENSAMEG00000026681) #12	NAPB (ENSAMEG00000009863) #13	GZF1 (ENSAMEG00000009853) #14	NXT1 (ENSAMEG00000018729) #15	ENSAMEG00000024065	CD93 (ENSAMEG00000009849) #17	THBD (ENSAMEG00000019083)	SSTR4 (ENSAMEG00000019048) #18	FOXA2 (ENSAMEG00000015802) #19	ENSAMEG00000031412	PAX1 (ENSAMEG00000012642) #21	NKX2-2 (ENSAMEG00000029802) #22	NKX2-4 (ENSAMEG00000030670) #23	XRN2 (ENSAMEG00000012581) #24	KIZ (ENSAMEG00000012566) #25	RALGAPA2 (ENSAMEG00000000299) #27	CFAP61 (ENSAMEG00000000288) #29	CRNKL1 (ENSAMEG00000000270) #30	NAA20 (ENSAMEG00000000262) #31	RIN2 (ENSAMEG00000000240) #32	SLC24A3 (ENSAMEG00000000234) #33	SCP2D1 (ENSAMEG00000018743)	DTD1 (ENSAMEG00000005878) #35	SMIM26 (ENSAMEG00000025598)	SEC23B (ENSAMEG00000005865) #36	RBBP9 (ENSAMEG00000005238)	POLR3F (ENSAMEG00000005222)
Ursus	ANCESTRAL SPECIES	191	ENSGT00940000161877.n	ENSGT00940000161877.m.b	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000165454	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25
Polar bear	MODERN SPECIES	300	ENSUMAG00000004190	ENSUMAG00000004185	ENSUMAG00000004168	ENSUMAG00000004162	CST8 (ENSUMAG00000004155) #9	ENSUMAG00000004147	ENSUMAG00000004140 ##10	CST11 (ENSUMAG00000004135) #11	CSTL1 (ENSUMAG00000004128) #12	NAPB (ENSUMAG00000004081) #13	GZF1 (ENSUMAG00000004065) #14	NXT1 (ENSUMAG00000004062) #15	CD93 (ENSUMAG00000004052) #17	SSTR4 (ENSUMAG00000004048) #18	PAX1 (ENSUMAG00000004035) #21	ENSUMAG00000004026 #22	XRN2 (ENSUMAG00000004012) #24	KIZ (ENSUMAG00000003912) #25	ENSUMAG00000003879 #27
American black bear	MODERN SPECIES	956																NKX2-2 (ENSUAMG00000024865) #22	ENSUAMG00000024864 #23	XRN2 (ENSUAMG00000024634) #24	KIZ (ENSUAMG00000024603) #25
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00940000162636.B ##10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041.l #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041.l #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861
Tenrec	MODERN SPECIES	17925																NKX2-2 (ENSETEG00000010501) #22
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249	ENSGT00940000162294 #9	ENSGT00940000162636.A #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041.l #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861
Hyrax	MODERN SPECIES	8892																NKX2-2 (ENSPCAG00000008298) #22
Elephant	MODERN SPECIES	180	ENSLAFG00000002805	ENSLAFG00000006741	CST8 (ENSLAFG00000002803) #9	ENSLAFG00000030756 #10	ENSLAFG00000008240 #11	CSTL1 (ENSLAFG00000008243) #12	NAPB (ENSLAFG00000002461) #13	GZF1 (ENSLAFG00000002458) #14	NXT1 (ENSLAFG00000029098) #15	CD93 (ENSLAFG00000027545) #17	THBD (ENSLAFG00000012832)	ENSLAFG00000032254 #18	FOXA2 (ENSLAFG00000026345) #19	ENSLAFG00000031871	PAX1 (ENSLAFG00000008908) #21	NKX2-2 (ENSLAFG00000002379) #22	ENSLAFG00000014638 #23	XRN2 (ENSLAFG00000014624) #24	KIZ (ENSLAFG00000002389) #25	ENSLAFG00000032497 #27	ENSLAFG00000011596 #27	INSM1 (ENSLAFG00000011594) #28	ENSLAFG00000029531	ENSLAFG00000028424 #29	ENSLAFG00000004520 #29	CRNKL1 (ENSLAFG00000004512) #30	NAA20 (ENSLAFG00000004510) #31	RIN2 (ENSLAFG00000015169) #32	SLC24A3 (ENSLAFG00000012423) #33	SCP2D1 (ENSLAFG00000007035)	DTD1 (ENSLAFG00000003645) #35
Xenarthra	ANCESTRAL SPECIES	347															ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33
Armadillo	MODERN SPECIES	425															PAX1 (ENSDNOG00000033546) #21	NKX2-2 (ENSDNOG00000038407) #22	ENSDNOG00000025932	NKX2-4 (ENSDNOG00000040998) #23	XRN2 (ENSDNOG00000001895) #24	KIZ (ENSDNOG00000046969) #25	RALGAPA2 (ENSDNOG00000016236) #27	INSM1 (ENSDNOG00000033318) #28	CFAP61 (ENSDNOG00000016231) #29	CRNKL1 (ENSDNOG00000016226) #30	NAA20 (ENSDNOG00000034715) #31	RIN2 (ENSDNOG00000016218) #32	SLC24A3 (ENSDNOG00000016125) #33	ENSDNOG00000004039
Marsupialia	ANCESTRAL SPECIES	19	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36	ENSGT00390000014861
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b	ENSGT00940000163249	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT00550000074931.g #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00860000134050	ENSGT00390000006916.c #36
koala	MODERN SPECIES	1	CST7 (ENSPCIG00000035164)	SYNDIG1 (ENSPCIG00000008651)	ENSPCIG00000008654	ENSPCIG00000036306	ENSPCIG00000013810	ENSPCIG00000013809	NAPB (ENSPCIG00000013805) #13	ENSPCIG00000031294 #14	ENSPCIG00000013803 #14	ENSPCIG00000013801	CD93 (ENSPCIG00000015492) #17	ENSPCIG00000015494	SSTR4 (ENSPCIG00000015498) #18	FOXA2 (ENSPCIG00000025918) #19	PAX1 (ENSPCIG00000031385) #21	NKX2-2 (ENSPCIG00000034162) #22	ENSPCIG00000031596	NKX2-4 (ENSPCIG00000024538) #23	XRN2 (ENSPCIG00000001237) #24	ENSPCIG00000001346 #27	ENSPCIG00000008868 #27	INSM1 (ENSPCIG00000025810) #28	ENSPCIG00000034193	CFAP61 (ENSPCIG00000025813) #29	CRNKL1 (ENSPCIG00000025825) #30	NAA20 (ENSPCIG00000025955) #31	RIN2 (ENSPCIG00000020994) #32	SLC24A3 (ENSPCIG00000018234) #33	SCP2D1 (ENSPCIG00000019128)	ENSPCIG00000001009	DTD1 (ENSPCIG00000000993) #35
Common wonbat	MODERN SPECIES	1073											CD93 (ENSVURG00010005436) #17	THBD (ENSVURG00010005445)	SSTR4 (ENSVURG00010005456) #18	FOXA2 (ENSVURG00010005464) #19	PAX1 (ENSVURG00010005488) #21	NKX2-2 (ENSVURG00010005501) #22	NKX2-4 (ENSVURG00010005513) #23	XRN2 (ENSVURG00010005531) #24	KIZ (ENSVURG00010005599) #25	ENSVURG00010005678	RALGAPA2 (ENSVURG00010005756) #27	INSM1 (ENSVURG00010005820) #28	ENSVURG00010005834	ENSVURG00010005838	ENSVURG00010005844 #29	ENSVURG00010005874 #29	ENSVURG00010005888 #29	ENSVURG00010005903 #30	NAA20 (ENSVURG00010005948) #31	ENSVURG00010005965	RIN2 (ENSVURG00010005982) #32
Wallaby	MODERN SPECIES	3299																NKX2-2 (ENSMEUG00000014506) #22
Tasmanian devil	MODERN SPECIES	1	VSX1 (ENSSHAG00000027598)	ENSSHAG00000031963	ACSS1 (ENSSHAG00000004290)	APMAP (ENSSHAG00000002616)	ENSSHAG00000000722	SYNDIG1 (ENSSHAG00000026100)	ENSSHAG00000032132	ENSSHAG00000031598	NAPB (ENSSHAG00000022875) #13	ENSSHAG00000009367 #14	CD93 (ENSSHAG00000031195) #17	THBD (ENSSHAG00000028423)	SSTR4 (ENSSHAG00000012685) #18	FOXA2 (ENSSHAG00000014905) #19	PAX1 (ENSSHAG00000017556) #21	NKX2-2 (ENSSHAG00000004915) #22	NKX2-4 (ENSSHAG00000024664) #23	XRN2 (ENSSHAG00000023603) #24	KIZ (ENSSHAG00000027601) #25	RALGAPA2 (ENSSHAG00000011234) #27	CFAP61 (ENSSHAG00000013786) #29	ENSSHAG00000030457 #30	ENSSHAG00000022346 #31	ENSSHAG00000027541 #30	ENSSHAG00000025214 #31	RIN2 (ENSSHAG00000014834) #32	SLC24A3 (ENSSHAG00000015606) #33	SCP2D1 (ENSSHAG00000017843)	DTD1 (ENSSHAG00000028090) #35	SEC23B (ENSSHAG00000018083) #36	RBBP9 (ENSSHAG00000023516)
Opossum	MODERN SPECIES		VSX1 (ENSMODG00000006351)	ACSS1 (ENSMODG00000006345)	APMAP (ENSMODG00000006313)	ENSMODG00000006300	ENSMODG00000044809	SYNDIG1 (ENSMODG00000006293)	ENSMODG00000048042	NAPB (ENSMODG00000006277) #13	GZF1 (ENSMODG00000006238) #14	ENSMODG00000044175 #14	CD93 (ENSMODG00000006221) #17	ENSMODG00000023139	SSTR4 (ENSMODG00000023138) #18	FOXA2 (ENSMODG00000006213) #19	PAX1 (ENSMODG00000006198) #21	NKX2-2 (ENSMODG00000006177) #22	NKX2-4 (ENSMODG00000006170) #23	XRN2 (ENSMODG00000006163) #24	ENSMODG00000040034	KIZ (ENSMODG00000006125) #25	ENSMODG00000006089 #27	ENSMODG00000036552	ENSMODG00000050875	ENSMODG00000043419 #27	INSM1 (ENSMODG00000006031) #28	CFAP61 (ENSMODG00000005981) #29	ENSMODG00000005961 #30	NAA20 (ENSMODG00000005931) #31	ENSMODG00000028620	RIN2 (ENSMODG00000005916) #32	SLC24A3 (ENSMODG00000005890) #33
Platypus	MODERN SPECIES		NT5C1B (ENSOANG00000007019)	OSR1 (ENSOANG00000045764)	ENSOANG00000007840	CST7 (ENSOANG00000042962)	SYNDIG1 (ENSOANG00000010870)	ENSOANG00000051113	NAPB (ENSOANG00000000251) #13	ENSOANG00000045902	GZF1 (ENSOANG00000038746) #14	ENSOANG00000022376 #14	ENSOANG00000041257 #17	ENSOANG00000015171	SSTR4 (ENSOANG00000037977) #18	FOXA2 (ENSOANG00000015108) #19	PAX1 (ENSOANG00000002008) #21	ENSOANG00000047729 #22	NKX2-4 (ENSOANG00000048651) #23	XRN2 (ENSOANG00000015673) #24	ENSOANG00000002851 #25	RALGAPA2 (ENSOANG00000002499) #27	INSM1 (ENSOANG00000038669) #28	CFAP61 (ENSOANG00000046492) #29	CRNKL1 (ENSOANG00000031667) #30	NAA20 (ENSOANG00000036301) #31	RIN2 (ENSOANG00000002281) #32	SLC24A3 (ENSOANG00000015699) #33	SCP2D1 (ENSOANG00000003673)	DTD1 (ENSOANG00000038993) #35	ENSOANG00000039827	SEC23B (ENSOANG00000008750) #36	ENSOANG00000020618
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35
Lepidosauria	ANCESTRAL SPECIES	123													ENSGT00940000156996 #17	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247.b #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36
tuatara	MODERN SPECIES	1774															PAX1 (ENSSPUG00000005561) #21	NKX2-2 (ENSSPUG00000005539) #22	NKX2-4 (ENSSPUG00000005535) #23	XRN2 (ENSSPUG00000005485) #24	ENSSPUG00000005474 #25	ENSSPUG00000005471 #25	ENSSPUG00000005462	ENSSPUG00000005413 #27	ENSSPUG00000005392	ENSSPUG00000005379 #27	ENSSPUG00000005371	ENSSPUG00000005359 #27	INSM1 (ENSSPUG00000005332) #28	CFAP61 (ENSSPUG00000005289) #29	CRNKL1 (ENSSPUG00000005254) #30	NAA20 (ENSSPUG00000005245) #31
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00940000154755	ENSGT00940000164218	ENSGT00940000156996 #17	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247.b #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00950000183147.B
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00940000154755	ENSGT00940000164218	ENSGT00940000166261.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247.b #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00950000183147.B	ENSGT00950000183067.a.a
Argentine black and white tegu	MODERN SPECIES	36	TENT4A (ENSSMRG00000015539)	ADCY2 (ENSSMRG00000015544)	ENSSMRG00000016193	CFAP90 (ENSSMRG00000016195)	FASTKD3 (ENSSMRG00000016197)	MTRR (ENSSMRG00000016199)	SEMA5A (ENSSMRG00000016201)	ATPSCKMT (ENSSMRG00000016204)	CCT5 (ENSSMRG00000016206)	ENSSMRG00000016209	CST3 (ENSSMRG00000016211)	ENSSMRG00000016212	ENSSMRG00000016213	FOXA2 (ENSSMRG00000016214) #19	PAX1 (ENSSMRG00000016215) #21	NKX2-2 (ENSSMRG00000016217) #22	NKX2-4 (ENSSMRG00000016219) #23	XRN2 (ENSSMRG00000016220) #24	KIZ (ENSSMRG00000017056) #25	ENSSMRG00000017072	RALGAPA2 (ENSSMRG00000017087) #27	ENSSMRG00000018136	CFAP61 (ENSSMRG00000018138) #29	CRNKL1 (ENSSMRG00000018141) #30	NAA20 (ENSSMRG00000018142) #31	RIN2 (ENSSMRG00000018143) #32	SLC24A3 (ENSSMRG00000018144) #33	SCP2D1 (ENSSMRG00000018145)	DTD1 (ENSSMRG00000018146) #35	SEC23B (ENSSMRG00000018147) #36	SYNDIG1 (ENSSMRG00000018148)
Common wall lizard	MODERN SPECIES	15	CFAP90 (ENSPMRG00000020186)	FASTKD3 (ENSPMRG00000020182)	MTRR (ENSPMRG00000020175)	ENSPMRG00000020156	SEMA5A (ENSPMRG00000020146)	ENSPMRG00000020140	ENSPMRG00000020136	ENSPMRG00000020132	ATPSCKMT (ENSPMRG00000020115)	CCT5 (ENSPMRG00000020104)	CST3 (ENSPMRG00000020097)	ENSPMRG00000020082	ENSPMRG00000020069	FOXA2 (ENSPMRG00000020065) #19	PAX1 (ENSPMRG00000020057) #21	NKX2-2 (ENSPMRG00000020050) #22	ENSPMRG00000020042 #23	ENSPMRG00000020038	XRN2 (ENSPMRG00000020016) #24	KIZ (ENSPMRG00000020002) #25	RALGAPA2 (ENSPMRG00000019950) #27	CFAP61 (ENSPMRG00000019900) #29	CRNKL1 (ENSPMRG00000019875) #30	NAA20 (ENSPMRG00000019868) #31	RIN2 (ENSPMRG00000019862) #32	SLC24A3 (ENSPMRG00000019844) #33	DTD1 (ENSPMRG00000019836) #35	SEC23B (ENSPMRG00000019825) #36	SYNDIG1 (ENSPMRG00000019820)	AFAP1 (ENSPMRG00000019806)	SORCS2 (ENSPMRG00000019764)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a.h	ENSGT00550000074988	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996 #17	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247.b #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00950000183147.B
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a.h	ENSGT00550000074988	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996 #17	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247.b #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b.i #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00950000183147.B	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a.h	ENSGT00550000074988	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996 #17	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247.b #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b.i #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00950000183147.B	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a
Acanthophiinae	ANCESTRAL SPECIES	35	ENSGT00940000161612	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a.h	ENSGT00550000074988	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247.b #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b.i #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00990000214234	ENSGT00390000006916.c #36	ENSGT00950000183147.B	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a
Eastern brown snake	MODERN SPECIES	15	UBE2QL1 (ENSPTXG00000004113)	NSUN2 (ENSPTXG00000003936)	SRD5A1 (ENSPTXG00000003935)	TENT4A (ENSPTXG00000003934)	ADCY2 (ENSPTXG00000003858)	CFAP90 (ENSPTXG00000003856)	FASTKD3 (ENSPTXG00000003854)	MTRR (ENSPTXG00000003852)	SEMA5A (ENSPTXG00000003851)	ATPSCKMT (ENSPTXG00000003849)	CCT5 (ENSPTXG00000003847)	ENSPTXG00000003846	ENSPTXG00000003845	FOXA2 (ENSPTXG00000003844) #19	PAX1 (ENSPTXG00000003840) #21	NKX2-2 (ENSPTXG00000003839) #22	NKX2-4 (ENSPTXG00000003838) #23	XRN2 (ENSPTXG00000003835) #24	RALGAPA2 (ENSPTXG00000003831) #27	CFAP61 (ENSPTXG00000003415) #29	CRNKL1 (ENSPTXG00000003383) #30	RIN2 (ENSPTXG00000003382) #32	SLC24A3 (ENSPTXG00000003380) #33	ENSPTXG00000003379	SCP2D1 (ENSPTXG00000003378)	DTD1 (ENSPTXG00000003377) #35	ENSPTXG00000003375	SEC23B (ENSPTXG00000003374) #36	SYNDIG1 (ENSPTXG00000003373)	AFAP1 (ENSPTXG00000003371)	SORCS2 (ENSPTXG00000003364)
Mainland tiger snake	MODERN SPECIES	45	SRD5A1 (ENSNSUG00000010410)	ENSNSUG00000010413	TENT4A (ENSNSUG00000010414)	ADCY2 (ENSNSUG00000010421)	ENSNSUG00000010690	FASTKD3 (ENSNSUG00000010691)	MTRR (ENSNSUG00000010692)	SEMA5A (ENSNSUG00000010721)	ATPSCKMT (ENSNSUG00000010722)	CCT5 (ENSNSUG00000010732)	ENSNSUG00000010733	ENSNSUG00000010734	ENSNSUG00000010735	FOXA2 (ENSNSUG00000010738) #19	PAX1 (ENSNSUG00000010743) #21	NKX2-2 (ENSNSUG00000010747) #22	NKX2-4 (ENSNSUG00000010748) #23	XRN2 (ENSNSUG00000010749) #24	ENSNSUG00000010754 #25	ENSNSUG00000010764 #27	CFAP61 (ENSNSUG00000010774) #29	CRNKL1 (ENSNSUG00000010801) #30	RIN2 (ENSNSUG00000010814) #32	SLC24A3 (ENSNSUG00000010817) #33	ENSNSUG00000010819	SCP2D1 (ENSNSUG00000010820)	DTD1 (ENSNSUG00000010823) #35	ENSNSUG00000010825	SEC23B (ENSNSUG00000010828) #36	SYNDIG1 (ENSNSUG00000010850)	AFAP1 (ENSNSUG00000010854)
Indian cobra	MODERN SPECIES	2	SRD5A1 (ENSNNAG00000013987)	TENT4A (ENSNNAG00000013975)	ADCY2 (ENSNNAG00000012796)	CFAP90 (ENSNNAG00000012693)	FASTKD3 (ENSNNAG00000012636)	MTRR (ENSNNAG00000012393)	SEMA5A (ENSNNAG00000012300)	ENSNNAG00000012269	CCT5 (ENSNNAG00000012242)	ENSNNAG00000012223	ENSNNAG00000012207	ENSNNAG00000012195 #17	FOXA2 (ENSNNAG00000012180) #19	PAX1 (ENSNNAG00000012128) #21	ENSNNAG00000012106	NKX2-2 (ENSNNAG00000012093) #22	NKX2-4 (ENSNNAG00000012057) #23	XRN2 (ENSNNAG00000011585) #24	RALGAPA2 (ENSNNAG00000010761) #27	CFAP61 (ENSNNAG00000010625) #29	ENSNNAG00000010579	CRNKL1 (ENSNNAG00000010521) #30	RIN2 (ENSNNAG00000010471) #32	SLC24A3 (ENSNNAG00000010197) #33	SCP2D1 (ENSNNAG00000010155)	DTD1 (ENSNNAG00000010119) #35	SEC23B (ENSNNAG00000010054) #36	SYNDIG1 (ENSNNAG00000010041)	AFAP1 (ENSNNAG00000009998)	SORCS2 (ENSNNAG00000009900)	GRPEL1 (ENSNNAG00000009878)
Lizard	MODERN SPECIES	3	ENSACAG00000044221	ADCY2 (ENSACAG00000010038)	ENSACAG00000021000	FASTKD3 (ENSACAG00000010201)	MTRR (ENSACAG00000010211)	SEMA5A (ENSACAG00000010350)	ENSACAG00000037363	ENSACAG00000010474	ENSACAG00000041598	CCT5 (ENSACAG00000010488)	ENSACAG00000021112	ENSACAG00000023847	ENSACAG00000043135	FOXA2 (ENSACAG00000012163) #19	PAX1 (ENSACAG00000010563) #21	NKX2-2 (ENSACAG00000005697) #22	XRN2 (ENSACAG00000005565) #24	KIZ (ENSACAG00000028994) #25	ENSACAG00000029173	RALGAPA2 (ENSACAG00000005439) #27	CFAP61 (ENSACAG00000005383) #29	ENSACAG00000042716	CRNKL1 (ENSACAG00000005284) #30	NAA20 (ENSACAG00000005272) #31	RIN2 (ENSACAG00000005226) #32	ENSACAG00000041292	ENSACAG00000042539	SLC24A3 (ENSACAG00000005176) #33	SCP2D1 (ENSACAG00000045395)	DTD1 (ENSACAG00000007143) #35	SEC23B (ENSACAG00000007168) #36
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35
Archosauria	ANCESTRAL SPECIES	45	ENSGT01030000235482	ENSGT00940000157865	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36
Aves	ANCESTRAL SPECIES	56	ENSGT00940000162755	ENSGT00940000157865	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33
Neognathae	ANCESTRAL SPECIES	32	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32	ENSGT00550000075046 #31
Neognathae_b	ANCESTRAL SPECIES	32	ENSGT00390000003178	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32	ENSGT00550000075046 #31
Passeriformes	ANCESTRAL SPECIES	31	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32
Passeriformes_d	ANCESTRAL SPECIES	32	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32
Passeriformes_g	ANCESTRAL SPECIES	37	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00960000189741	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32
Passeroidea	ANCESTRAL SPECIES	34	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00960000189741	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32
Zebra finch	MODERN SPECIES	23	NPHP1 (ENSTGUG00000007320)	ENSTGUG00000025973	ENSTGUG00000007338	ENSTGUG00000007339	BCL2L11 (ENSTGUG00000029584)	ANAPC1 (ENSTGUG00000007360)	MERTK (ENSTGUG00000007420)	FBLN7 (ENSTGUG00000007459)	ZC3H6 (ENSTGUG00000007468)	NAPB (ENSTGUG00000007487) #13	GZF1 (ENSTGUG00000007503) #14	CD93 (ENSTGUG00000007522) #17	SSTR4 (ENSTGUG00000027392) #18	FOXA2 (ENSTGUG00000007523) #19	PAX1 (ENSTGUG00000007526) #21	NKX2-2 (ENSTGUG00000007528) #22	NKX2-4 (ENSTGUG00000007530) #23	XRN2 (ENSTGUG00000007535) #24	RALGAPA2 (ENSTGUG00000007590) #27	CFAP61 (ENSTGUG00000007628) #29	CRNKL1 (ENSTGUG00000007645) #30	SLC24A3 (ENSTGUG00000007669) #33	RIN2 (ENSTGUG00000007689) #32	KCNK16 (ENSTGUG00000007716)	KCNK17 (ENSTGUG00000029644)	KCNK5 (ENSTGUG00000007722)	SAYSD1 (ENSTGUG00000021592)	GLP1R (ENSTGUG00000007730)	DNAH8 (ENSTGUG00000007770)	GLO1 (ENSTGUG00000007808)	BTBD9 (ENSTGUG00000007817)
Neognathae_c	ANCESTRAL SPECIES	35	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32	ENSGT00550000075046 #31
Kakapo	MODERN SPECIES	23	ENSSHBG00005003982	BUB1 (ENSSHBG00005004013)	BCL2L11 (ENSSHBG00005004035)	ANAPC1 (ENSSHBG00005004106)	MERTK (ENSSHBG00005004201)	FBLN7 (ENSSHBG00005004208)	ZC3H6 (ENSSHBG00005004214)	NAPB (ENSSHBG00005004226) #13	GZF1 (ENSSHBG00005004233) #14	ENSSHBG00005004244 #14	CD93 (ENSSHBG00005004250) #17	ENSSHBG00005004256	SSTR4 (ENSSHBG00005004259) #18	FOXA2 (ENSSHBG00005004262) #19	PAX1 (ENSSHBG00005004267) #21	NKX2-2 (ENSSHBG00005004272) #22	NKX2-4 (ENSSHBG00005004276) #23	XRN2 (ENSSHBG00005004281) #24	KIZ (ENSSHBG00005004290) #25	RALGAPA2 (ENSSHBG00005004387) #27	CFAP61 (ENSSHBG00005004844) #29	ENSSHBG00005004852	CRNKL1 (ENSSHBG00005004860) #30	SLC24A3 (ENSSHBG00005004870) #33	RIN2 (ENSSHBG00005004874) #32
Golden eagle	MODERN SPECIES	24	ENSACCG00020005788	ANAPC1 (ENSACCG00020005824)	MERTK (ENSACCG00020005872)	FBLN7 (ENSACCG00020005894)	ENSACCG00020005911	ENSACCG00020005918	ENSACCG00020005936	NAPB (ENSACCG00020005953) #13	GZF1 (ENSACCG00020005972) #14	ENSACCG00020005987 #14	CD93 (ENSACCG00020006004) #17	ENSACCG00020006015	SSTR4 (ENSACCG00020006025) #18	FOXA2 (ENSACCG00020006036) #19	PAX1 (ENSACCG00020006045) #21	NKX2-2 (ENSACCG00020006058) #22	NKX2-4 (ENSACCG00020006068) #23	XRN2 (ENSACCG00020006117) #24	KIZ (ENSACCG00020006182) #25	RALGAPA2 (ENSACCG00020006230) #27	CFAP61 (ENSACCG00020006273) #29	CRNKL1 (ENSACCG00020006304) #30	SLC24A3 (ENSACCG00020006342) #33	RIN2 (ENSACCG00020006417) #32	NAA20 (ENSACCG00020006429) #31	C2CD2L (ENSACCG00020006443)	DPAGT1 (ENSACCG00020006457)	H2AX (ENSACCG00020006466)	HMBS (ENSACCG00020006483)	VPS11 (ENSACCG00020006501)	DDX6 (ENSACCG00020006520)
Galloanserae	ANCESTRAL SPECIES	29	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32
Anatidae	ANCESTRAL SPECIES	45	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32
Pink-footed goose	MODERN SPECIES	117	MALL (ENSABRG00000012466)	NPHP1 (ENSABRG00000012031)	BUB1 (ENSABRG00000011694)	ENSABRG00000011634	ANAPC1 (ENSABRG00000011610)	MERTK (ENSABRG00000011592)	FBLN7 (ENSABRG00000011583)	ZC3H6 (ENSABRG00000011566)	NAPB (ENSABRG00000011550) #13	GZF1 (ENSABRG00000011534) #14	CD93 (ENSABRG00000011523) #17	ENSABRG00000011520	SSTR4 (ENSABRG00000011516) #18	FOXA2 (ENSABRG00000011501) #19	PAX1 (ENSABRG00000011485) #21	NKX2-2 (ENSABRG00000011480) #22	NKX2-4 (ENSABRG00000011475) #23	XRN2 (ENSABRG00000011465) #24	ENSABRG00000011461 #25	RALGAPA2 (ENSABRG00000007031) #27	INSM1 (ENSABRG00000006785) #28	CFAP61 (ENSABRG00000006636) #29	CRNKL1 (ENSABRG00000006550) #30	SLC24A3 (ENSABRG00000006519) #33	RIN2 (ENSABRG00000006510) #32
Duck	MODERN SPECIES	3198																ENSAPLG00000024215 #22
Phasianidae	ANCESTRAL SPECIES	29	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32	ENSGT00950000183148.b.b	ENSGT00940000160517	ENSGT01030000234620.a.a.a.b	ENSGT00390000016927	ENSGT00940000157952	ENSGT00530000064165.b
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	604																ENSCJPG00005006711 #22
Japanese quail	MODERN SPECIES	21	ENSCJPG00005015849	BUB1 (ENSCJPG00005015844)	ENSCJPG00005015843	ENSCJPG00005015842	ANAPC1 (ENSCJPG00005015837)	MERTK (ENSCJPG00005015833)	FBLN7 (ENSCJPG00005015831)	ZC3H6 (ENSCJPG00005015830)	NAPB (ENSCJPG00005015828) #13	GZF1 (ENSCJPG00005015826) #14	ENSCJPG00005015825 #14	CD93 (ENSCJPG00005015799) #17	ENSCJPG00005015797	SSTR4 (ENSCJPG00005015795) #18	FOXA2 (ENSCJPG00005015793) #19	ENSCJPG00005015788 #22	NKX2-4 (ENSCJPG00005015785) #23	XRN2 (ENSCJPG00005015783) #24	KIZ (ENSCJPG00005015757) #25	RALGAPA2 (ENSCJPG00005015594) #27	INSM1 (ENSCJPG00005015593) #28	CFAP61 (ENSCJPG00005015592) #29	CRNKL1 (ENSCJPG00005015591) #30	SLC24A3 (ENSCJPG00005015590) #33	RIN2 (ENSCJPG00005015589) #32	PYGB (ENSCJPG00005015588)	ABHD12 (ENSCJPG00005015587)	MEA1 (ENSCJPG00005015586)	PPP2R5D (ENSCJPG00005015454)	ENSCJPG00005015450	KLHDC3 (ENSCJPG00005015449)
Phasianidae_b	ANCESTRAL SPECIES	28	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000156819.a.a #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154866.B #32	ENSGT00950000183148.b.b	ENSGT00940000160517	ENSGT01030000234620.a.a.a.b	ENSGT00390000016927	ENSGT00940000157952	ENSGT00530000064165.b
Chicken	MODERN SPECIES	22	BUB1 (ENSGALG00010017024)	ENSGALG00010019362	ENSGALG00010016570	ANAPC1 (ENSGALG00010017890)	MERTK (ENSGALG00010017922)	FBLN7 (ENSGALG00010017950)	ZC3H8 (ENSGALG00010018002)	NAPB (ENSGALG00010018019) #13	ENSGALG00010018028	GZF1 (ENSGALG00010018037) #14	CD248 (ENSGALG00010019399) #17	SSTR4 (ENSGALG00010018057) #18	ENSGALG00010018067	FOXA2 (ENSGALG00010018076) #19	PAX1 (ENSGALG00010018083) #21	NKX2-2 (ENSGALG00010018111) #22	NKX2-4 (ENSGALG00010018125) #23	XRN2 (ENSGALG00010018148) #24	KIZ (ENSGALG00010018206) #25	RALGAPA2 (ENSGALG00010018241) #27	CFAP61 (ENSGALG00010018264) #29	INSM1 (ENSGALG00010018279) #28	CRNKL1 (ENSGALG00010018288) #30	SLC24A3 (ENSGALG00010018314) #33	RIN2 (ENSGALG00010018351) #32	PYGB (ENSGALG00010018376)	ABHD12 (ENSGALG00010018399)	PPP2R5D (ENSGALG00010018428)	MEA1 (ENSGALG00010018440)	KLHDC3 (ENSGALG00010018448)	ENSGALG00010018476
Turkey	MODERN SPECIES	339																ENSMGAG00000018710 #22
Australian saltwater crocodile	MODERN SPECIES	49	BUB1 (ENSCPRG00005012038)	ENSCPRG00005012033	ANAPC1 (ENSCPRG00005011214)	MERTK (ENSCPRG00005011095)	FBLN7 (ENSCPRG00005011087)	ZC3H6 (ENSCPRG00005011052)	ATL2 (ENSCPRG00005011048)	NAPB (ENSCPRG00005011045) #13	GZF1 (ENSCPRG00005011042) #14	ENSCPRG00005011032 #14	ENSCPRG00005011030	ENSCPRG00005011023	SSTR4 (ENSCPRG00005011021) #18	FOXA2 (ENSCPRG00005011011) #19	PAX1 (ENSCPRG00005011002) #21	NKX2-2 (ENSCPRG00005010983) #22	ENSCPRG00005010979	ENSCPRG00005010975 #23	ENSCPRG00005010970 #23	XRN2 (ENSCPRG00005010683) #24	KIZ (ENSCPRG00005010629) #25	ENSCPRG00005010578	ENSCPRG00005010575	RALGAPA2 (ENSCPRG00005010555) #27	CFAP61 (ENSCPRG00005010399) #29	CRNKL1 (ENSCPRG00005010333) #30	NAA20 (ENSCPRG00005010325) #31	RIN2 (ENSCPRG00005010315) #32	SLC24A3 (ENSCPRG00005010233) #33	SCP2D1 (ENSCPRG00005010201)	DTD1 (ENSCPRG00005010193) #35
Cryptodira	ANCESTRAL SPECIES	44	ENSGT00940000157908	ENSGT00400000022158	ENSGT00940000160981	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483	ENSGT00390000015299.a.b.b.b	ENSGT00940000162755	ENSGT00390000007551	ENSGT00390000007701	ENSGT00940000161444	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35
Testudinoidea	ANCESTRAL SPECIES		ENSGT00400000022158	ENSGT00940000153954.d.f.b	ENSGT00940000160981	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483	ENSGT00390000015299.a.b.b.b	ENSGT00940000162755	ENSGT00390000007551	ENSGT00390000007701	ENSGT00940000161444	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00400000022158	ENSGT00940000153954.d.f.b	ENSGT00940000160981	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483.g	ENSGT00390000015299.a.b.b.b	ENSGT00940000162755	ENSGT00390000007551	ENSGT00390000007701	ENSGT00940000161444	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00940000167996	ENSGT00390000004987 #29	ENSGT01000000215777	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36
Goode s thornscrub tortoise	MODERN SPECIES	17	SRF (ENSGEVG00005018421)	ENSGEVG00005018131	TTBK1 (ENSGEVG00005017956)	DHX57 (ENSGEVG00005017880)	MORN2 (ENSGEVG00005017839)	ARHGEF33 (ENSGEVG00005017726)	SOS1 (ENSGEVG00005017656)	MAP4K3 (ENSGEVG00005017502)	TMEM178A (ENSGEVG00005017432)	ENSGEVG00005017333	MTLN (ENSGEVG00005017304)	NPHP1 (ENSGEVG00005017269)	MALL (ENSGEVG00005017245)	FOXA2 (ENSGEVG00005017225) #19	PAX1 (ENSGEVG00005017194) #21	NKX2-2 (ENSGEVG00005017179) #22	NKX2-4 (ENSGEVG00005017157) #23	XRN2 (ENSGEVG00005017099) #24	KIZ (ENSGEVG00005017056) #25	RALGAPA2 (ENSGEVG00005016920) #27	INSM1 (ENSGEVG00005016876) #28	ENSGEVG00005016856	CFAP61 (ENSGEVG00005016813) #29	ENSGEVG00005016799	CRNKL1 (ENSGEVG00005016766) #30	NAA20 (ENSGEVG00005016744) #31	RIN2 (ENSGEVG00005016686) #32	SLC24A3 (ENSGEVG00005016547) #33	SCP2D1 (ENSGEVG00005016532)	DTD1 (ENSGEVG00005016506) #35	SEC23B (ENSGEVG00005016472) #36
Abingdon island giant tortoise	MODERN SPECIES	1558		TTBK1 (ENSCABG00000020350)	DHX57 (ENSCABG00000020353)	MORN2 (ENSCABG00000020392)	ARHGEF33 (ENSCABG00000020394)	SOS1 (ENSCABG00000020408)	ENSCABG00000020469	ENSCABG00000020476	TMEM178A (ENSCABG00000020479)	ENSCABG00000020480	MTLN (ENSCABG00000020482)	NPHP1 (ENSCABG00000020484)	MALL (ENSCABG00000020487)	FOXA2 (ENSCABG00000020491) #19	PAX1 (ENSCABG00000020492) #21	NKX2-2 (ENSCABG00000020493) #22	NKX2-4 (ENSCABG00000020494) #23	XRN2 (ENSCABG00000020495) #24	ENSCABG00000020497 #25	RALGAPA2 (ENSCABG00000020498) #27	ENSCABG00000020512	INSM1 (ENSCABG00000020513) #28	ENSCABG00000020514
Emydidae	ANCESTRAL SPECIES	41	ENSGT00400000022158	ENSGT00940000153954.d.e.a	ENSGT00940000160981	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483	ENSGT00390000015299.a.b.b.b	ENSGT00940000162755	ENSGT00390000007551	ENSGT00390000007701	ENSGT00940000161444	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b #35	ENSGT00390000006916.c #36	ENSGT00390000014861
painted turtle	MODERN SPECIES	12	DPY30 (ENSCPBG00000023611)	MEMO1 (ENSCPBG00000023609)	TTBK1 (ENSCPBG00000023603)	DHX57 (ENSCPBG00000023598)	MORN2 (ENSCPBG00000023595)	ARHGEF33 (ENSCPBG00000023587)	SOS1 (ENSCPBG00000023579)	MAP4K3 (ENSCPBG00000023569)	TMEM178A (ENSCPBG00000023565)	ENSCPBG00000023559	MTLN (ENSCPBG00000023558)	NPHP1 (ENSCPBG00000023552)	MALL (ENSCPBG00000023547)	FOXA2 (ENSCPBG00000023545) #19	PAX1 (ENSCPBG00000023543) #21	NKX2-2 (ENSCPBG00000023541) #22	NKX2-4 (ENSCPBG00000023539) #23	XRN2 (ENSCPBG00000023533) #24	KIZ (ENSCPBG00000023528) #25	ENSCPBG00000023521	RALGAPA2 (ENSCPBG00000023514) #27	INSM1 (ENSCPBG00000023510) #28	CFAP61 (ENSCPBG00000023506) #29	CRNKL1 (ENSCPBG00000023501) #30	NAA20 (ENSCPBG00000023498) #31	RIN2 (ENSCPBG00000023491) #32	SCP2D1 (ENSCPBG00000023485)	DTD1 (ENSCPBG00000023483) #35	SEC23B (ENSCPBG00000023477) #36	RBBP9 (ENSCPBG00000023475)	POLR3F (ENSCPBG00000023473)
Three-toed box turtle	MODERN SPECIES	62	SRF (ENSTMTG00000012251)	TTBK1 (ENSTMTG00000012279)	DHX57 (ENSTMTG00000012331)	MORN2 (ENSTMTG00000012368)	ARHGEF33 (ENSTMTG00000012387)	SOS1 (ENSTMTG00000012507)	MAP4K3 (ENSTMTG00000012813)	TMEM178A (ENSTMTG00000012943)	ENSTMTG00000012974	MTLN (ENSTMTG00000012999)	ENSTMTG00000013008	NPHP1 (ENSTMTG00000013032)	MALL (ENSTMTG00000013173)	FOXA2 (ENSTMTG00000013199) #19	PAX1 (ENSTMTG00000013220) #21	NKX2-2 (ENSTMTG00000013238) #22	NKX2-4 (ENSTMTG00000013245) #23	XRN2 (ENSTMTG00000013258) #24	KIZ (ENSTMTG00000013304) #25	ENSTMTG00000013351	RALGAPA2 (ENSTMTG00000013368) #27	INSM1 (ENSTMTG00000013443) #28	CFAP61 (ENSTMTG00000013481) #29	CRNKL1 (ENSTMTG00000013822) #30	NAA20 (ENSTMTG00000013839) #31	RIN2 (ENSTMTG00000013852) #32	SLC24A3 (ENSTMTG00000013883) #33	SCP2D1 (ENSTMTG00000013925)	SEC23B (ENSTMTG00000013927) #36	RBBP9 (ENSTMTG00000013948)	POLR3F (ENSTMTG00000013956)
Chinese turtle	MODERN SPECIES	538		TTBK1 (ENSPSIG00000017019)	DHX57 (ENSPSIG00000016846)	MORN2 (ENSPSIG00000016605)	ENSPSIG00000000288	ARHGEF33 (ENSPSIG00000016062)	ENSPSIG00000015972	SOS1 (ENSPSIG00000012684)	MAP4K3 (ENSPSIG00000006139)	TMEM178A (ENSPSIG00000006050)	ENSPSIG00000017657	NPHP1 (ENSPSIG00000016164)	MALL (ENSPSIG00000015513)	ENSPSIG00000000279	ENSPSIG00000015386	NKX2-2 (ENSPSIG00000015250) #22	XRN2 (ENSPSIG00000014666) #24	KIZ (ENSPSIG00000014203) #25
Anura	ANCESTRAL SPECIES	116	ENSGT00950000183000.c.a.a	ENSGT00940000163054	ENSGT00940000166023	ENSGT00390000005232	ENSGT00390000007335	ENSGT00390000003153	ENSGT00530000064165.a	ENSGT00950000182898.a.a.a.a.a	ENSGT00940000157679	ENSGT00940000161779	ENSGT00940000161834	ENSGT00390000000610	ENSGT00940000162405	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00400000024959	ENSGT00950000183139.A #27	ENSGT00940000162552 #28	ENSGT00390000004987 #29	ENSGT00550000074931 #30	ENSGT00550000075046 #31	ENSGT00940000154866.B #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000153431.b #35	ENSGT00940000163377.b.a
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	6	PHTF2 (ENSLLEG00000021579)	ENSLLEG00000021524	MAGI2 (ENSLLEG00000021082)	ENSLLEG00000021040	ENSLLEG00000020995	ENSLLEG00000020964	ENSLLEG00000020799	ENSLLEG00000020778	ENSLLEG00000020730	CD36 (ENSLLEG00000020512)	SEMA3C (ENSLLEG00000020326)	ENSLLEG00000019442	HGF (ENSLLEG00000019280)	CACNA2D1 (ENSLLEG00000017804)	ENSLLEG00000017714	ENSLLEG00000017653 #22	PCLO (ENSLLEG00000016539)	ENSLLEG00000016426	SEMA3E (ENSLLEG00000016288)	ENSLLEG00000016241	SEMA3A (ENSLLEG00000015937)	ENSLLEG00000015914	SEMA3D (ENSLLEG00000015757)	ENSLLEG00000015727	ENSLLEG00000015693	GRM3 (ENSLLEG00000015613)	ELAPOR2 (ENSLLEG00000015426)	DMTF1 (ENSLLEG00000014930)	ENSLLEG00000014860	ENSLLEG00000014793	MEIG1 (ENSLLEG00000014762)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000001294	LMNB2 (ENSLLEG00000001327)	TIMM13 (ENSLLEG00000001377)	TMPRSS9 (ENSLLEG00000001418)	ENSLLEG00000001463	SPPL2B (ENSLLEG00000001488)	LSM7 (ENSLLEG00000001566)	ENSLLEG00000001635	ENSLLEG00000001652	ENSLLEG00000001715	ENSLLEG00000001878	ENSLLEG00000001893	SLC20A2 (ENSLLEG00000001933)	ENSLLEG00000002032	KCMF1 (ENSLLEG00000002059)	ENSLLEG00000002109 #22	FNTA (ENSLLEG00000002129)	POMK (ENSLLEG00000002153)	HGSNAT (ENSLLEG00000002203)	INTS10 (ENSLLEG00000002389)	CSGALNACT1 (ENSLLEG00000002574)	SH2D4A (ENSLLEG00000002624)	ENSLLEG00000002660	ENSLLEG00000002675	ENSLLEG00000002697	ENSLLEG00000002708	ENSLLEG00000002727	ENSLLEG00000002736	ENSLLEG00000002770	ENSLLEG00000002912	ENSLLEG00000002990
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000005603	BCL11A (ENSLLEG00000005447)	ENSLLEG00000005411	ENSLLEG00000005385	FANCL (ENSLLEG00000005345)	VRK2 (ENSLLEG00000018470)	ENSLLEG00000018431	CCDC85A (ENSLLEG00000018345)	EFEMP1 (ENSLLEG00000018149)	PNPT1 (ENSLLEG00000017678)	ENSLLEG00000016780	FOXA2 (ENSLLEG00000016660) #19	ENSLLEG00000016621	ENSLLEG00000016607	PAX1 (ENSLLEG00000016501) #21	ENSLLEG00000016343 #22	NKX2-4 (ENSLLEG00000016310) #23	XRN2 (ENSLLEG00000015999) #24	ENSLLEG00000015977	KIZ (ENSLLEG00000015612) #25	ENSLLEG00000015576	ENSLLEG00000015448	RALGAPA2 (ENSLLEG00000013982) #27	INSM1 (ENSLLEG00000013867) #28	ENSLLEG00000013844	ENSLLEG00000013836	ENSLLEG00000013817	CFAP61 (ENSLLEG00000013663) #29	ENSLLEG00000013641	CRNKL1 (ENSLLEG00000013452) #30	ATL2 (ENSLLEG00000012905)
Frog	MODERN SPECIES	5	ENSXETG00000047660	papolg (ENSXETG00000002208)	bcl11a (ENSXETG00000002206)	ENSXETG00000043268	ENSXETG00000020482	fancl (ENSXETG00000020481)	vrk2 (ENSXETG00000020477)	CCDC85A (ENSXETG00000006078)	efemp1 (ENSXETG00000006076)	dusp16 (ENSXETG00000006075)	ppp4r3b (ENSXETG00000006072)	cfap36 (ENSXETG00000006071)	foxa2 (ENSXETG00000026998) #19	ENSXETG00000049453	pax1 (ENSXETG00000023497) #21	nkx2-2 (ENSXETG00000023499) #22	nkx2-4 (ENSXETG00000046545) #23	xrn2 (ENSXETG00000023501) #24	ENSXETG00000045298	kiz (ENSXETG00000023506) #25	ENSXETG00000036108	ENSXETG00000045769	ralgapa2 (ENSXETG00000027617) #27	insm1 (ENSXETG00000040150) #28	cfap61 (ENSXETG00000009697) #29	crnkl1 (ENSXETG00000009698) #30	naa20 (ENSXETG00000037147) #31	rin2 (ENSXETG00000009700) #32	slc24a3 (ENSXETG00000000793) #33	dtd1 (ENSXETG00000000790) #35	ENSXETG00000048226
Coelacanth	MODERN SPECIES	3463																NKX2-2 (ENSLACG00000002767) #22