Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000161877	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000161877	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000161877.i	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00950000183014.f.a.h.u.a.a.b.a #16	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155114.wb.b #18	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT00390000001138.a.g #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00860000134050 #36	ENSGT00940000153431.b.b #35	ENSGT00390000006916.c #37
Rambouillet Sheep	MODERN SPECIES	4	ENSOARG00020005253 #7	ENSOARG00020005233 #8	ENSOARG00020005223 #9	ENSOARG00020005206 #10	ENSOARG00020005178 #11	CSTL1 (ENSOARG00020005157) #12	NAPB (ENSOARG00020004860) #13	GZF1 (ENSOARG00020004766) #14	NXT1 (ENSOARG00020004744) #15	ENSOARG00020004719 #16	CD93 (ENSOARG00020004706) #17	ENSOARG00020004667 #18	FOXA2 (ENSOARG00020004643) #19	ENSOARG00020004631 #20	PAX1 (ENSOARG00020004579) #21	NKX2-2 (ENSOARG00020004554) #22	NKX2-4 (ENSOARG00020004533) #23	XRN2 (ENSOARG00020004498) #24	KIZ (ENSOARG00020004321) #25	RALGAPA2 (ENSOARG00020003837) #26	INSM1 (ENSOARG00020003800) #27	CFAP61 (ENSOARG00020003632) #28	CRNKL1 (ENSOARG00020003543) #29	NAA20 (ENSOARG00020003499) #30	RIN2 (ENSOARG00020003240) #31	ENSOARG00020023127 #32	SLC24A3 (ENSOARG00020023051) #33	SCP2D1 (ENSOARG00020023032) #34	ENSOARG00020023011 #35	SMIM26 (ENSOARG00020022969) #36	SEC23B (ENSOARG00020022920) #37
Goat	MODERN SPECIES	4	ENSCHIG00000022173	ENSCHIG00000009930	ENSCHIG00000021829 #7	ENSCHIG00000025947 #8	ENSCHIG00000017766 #9	ENSCHIG00000003642 #10	ENSCHIG00000021813 #11	NAPB (ENSCHIG00000020249) #13	GZF1 (ENSCHIG00000008882) #14	ENSCHIG00000021979 #16	CD93 (ENSCHIG00000009092) #17	THBD (ENSCHIG00000010975)	ENSCHIG00000022438 #18	FOXA2 (ENSCHIG00000013879) #19	PAX1 (ENSCHIG00000025250) #21	NKX2-2 (ENSCHIG00000025252) #22	NKX2-4 (ENSCHIG00000017092) #23	ENSCHIG00000009213	XRN2 (ENSCHIG00000006921) #24	KIZ (ENSCHIG00000020496) #25	ENSCHIG00000001410	ENSCHIG00000005268	RALGAPA2 (ENSCHIG00000023081) #26	INSM1 (ENSCHIG00000002944) #27	CFAP61 (ENSCHIG00000022048) #28	CRNKL1 (ENSCHIG00000013171) #29	NAA20 (ENSCHIG00000021922) #30	RIN2 (ENSCHIG00000009997) #31	ENSCHIG00000020114	ENSCHIG00000008840 #32	SLC24A3 (ENSCHIG00000010684) #33
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT00390000001138.a.g.b #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Bos	ANCESTRAL SPECIES	22	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554.jb #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137.d #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B.d #31	ENSGT00390000001138.a.g.b #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554.jb #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137.d #21	ENSGT00940000153362.a.bb.b.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B.d #31	ENSGT00390000001138.a.g.b #32	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00950000183210.d.a.c.a.a.b.f.a.b	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Cow	MODERN SPECIES	4	SYNDIG1 (ENSBTAG00000040147)	CST3 (ENSBTAG00000000598)	ENSBTAG00000032687	ENSBTAG00000015949 #7	CST8 (ENSBTAG00000032694) #8	MGC133636 (ENSBTAG00000013416) #10	ENSBTAG00000027420 #9	NAPB (ENSBTAG00000032704) #13	GZF1 (ENSBTAG00000008908) #14	NXT1 (ENSBTAG00000004993) #15	CD93 (ENSBTAG00000004207) #17	THBD (ENSBTAG00000048591)	FOXA2 (ENSBTAG00000012407) #19	PAX1 (ENSBTAG00000006742) #21	ENSBTAG00000035643	NKX2-2 (ENSBTAG00000010277) #22	NKX2-4 (ENSBTAG00000011312) #23	XRN2 (ENSBTAG00000011304) #24	KIZ (ENSBTAG00000020988) #25	RALGAPA2 (ENSBTAG00000014178) #26	CFAP61 (ENSBTAG00000009291) #28	CRNKL1 (ENSBTAG00000008472) #29	NAA20 (ENSBTAG00000001144) #30	RIN2 (ENSBTAG00000020382) #31	ENSBTAG00000032893 #32	SLC24A3 (ENSBTAG00000011882) #33	SCP2D1 (ENSBTAG00000005202) #34	ENSBTAG00000012276	DTD1 (ENSBTAG00000008964) #35	SMIM26 (ENSBTAG00000051249) #36	SEC23B (ENSBTAG00000018295) #37
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554.jb #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137.d #21	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B.d #31	ENSGT00960000190537	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00950000183210.d.a.c.a.a.b.f.a.b	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Wild yak	MODERN SPECIES	194											CD93 (ENSBMUG00000003082) #17	ENSBMUG00000003102	FOXA2 (ENSBMUG00000003127) #19	PAX1 (ENSBMUG00000003140) #21	ENSBMUG00000003171	NKX2-2 (ENSBMUG00000003181) #22	XRN2 (ENSBMUG00000003295) #24	KIZ (ENSBMUG00000003411) #25	RALGAPA2 (ENSBMUG00000003599) #26	CFAP61 (ENSBMUG00000003762) #28	CRNKL1 (ENSBMUG00000003809) #29	NAA20 (ENSBMUG00000003835) #30	RIN2 (ENSBMUG00000003883) #31	ENSBMUG00000003910	SLC24A3 (ENSBMUG00000003930) #33	SCP2D1 (ENSBMUG00000003945) #34	ENSBMUG00000003967	DTD1 (ENSBMUG00000004000) #35	SMIM26 (ENSBMUG00000004015) #36	SEC23B (ENSBMUG00000004165) #37	RBBP9 (ENSBMUG00000004226)
Domestic yak	MODERN SPECIES	3	ENSBGRG00000007655 #9	ENSBGRG00000007612 #10	ENSBGRG00000007520 #11	CSTL1 (ENSBGRG00000007456) #12	NAPB (ENSBGRG00000007201) #13	ENSBGRG00000007150 #14	ENSBGRG00000007097 #14	NXT1 (ENSBGRG00000007076) #15	ENSBGRG00000007043	CD93 (ENSBGRG00000006986) #17	THBD (ENSBGRG00000006963)	FOXA2 (ENSBGRG00000006927) #19	PAX1 (ENSBGRG00000006855) #21	ENSBGRG00000006824 #21	ENSBGRG00000006808	NKX2-2 (ENSBGRG00000006790) #22	NKX2-4 (ENSBGRG00000006760) #23	XRN2 (ENSBGRG00000006633) #24	KIZ (ENSBGRG00000006486) #25	ENSBGRG00000006333 #26	ENSBGRG00000006247 #26	INSM1 (ENSBGRG00000006219) #27	CFAP61 (ENSBGRG00000006111) #28	CRNKL1 (ENSBGRG00000006006) #29	NAA20 (ENSBGRG00000005893) #30	ENSBGRG00000005870 #31	ENSBGRG00000005832 #31	SLC24A3 (ENSBGRG00000005785) #33	ENSBGRG00000005768	DTD1 (ENSBGRG00000005731) #35	SMIM26 (ENSBGRG00000005700) #36
American bison	MODERN SPECIES	2997	CST3 (ENSBBBG00000005938)	ENSBBBG00000022502	ENSBBBG00000022506 #7	CST8 (ENSBBBG00000022516) #8	ENSBBBG00000005942 #9	ENSBBBG00000022528 #10	ENSBBBG00000022535 #11	CSTL1 (ENSBBBG00000022543) #12	NAPB (ENSBBBG00000022632) #13	GZF1 (ENSBBBG00000022655) #14	CD93 (ENSBBBG00000005967) #17	THBD (ENSBBBG00000022684)	FOXA2 (ENSBBBG00000022700) #19	PAX1 (ENSBBBG00000022763) #21	ENSBBBG00000022780	ENSBBBG00000022786 #22	XRN2 (ENSBBBG00000022814) #24	KIZ (ENSBBBG00000022908) #25	RALGAPA2 (ENSBBBG00000022984) #26	ENSBBBG00000022996 #27	CFAP61 (ENSBBBG00000006046) #28	CRNKL1 (ENSBBBG00000008793) #29	NAA20 (ENSBBBG00000023097) #30	RIN2 (ENSBBBG00000023140) #31	ENSBBBG00000023147	SLC24A3 (ENSBBBG00000000461) #33	SCP2D1 (ENSBBBG00000000425) #34	DTD1 (ENSBBBG00000000410) #35	SMIM26 (ENSBBBG00000000399) #36	SEC23B (ENSBBBG00000023236) #37	RBBP9 (ENSBBBG00000006080)
Siberian musk deer	MODERN SPECIES	1194	CST3 (ENSMMSG00000018564)	ENSMMSG00000018584	ENSMMSG00000018603 #7	CST8 (ENSMMSG00000018626) #8	ENSMMSG00000018653 #9	ENSMMSG00000018676 #10	ENSMMSG00000018712 #11	CSTL1 (ENSMMSG00000018731) #12	NAPB (ENSMMSG00000018763) #13	GZF1 (ENSMMSG00000018836) #14	NXT1 (ENSMMSG00000018866) #15	CD93 (ENSMMSG00000018871) #17	THBD (ENSMMSG00000018897)	FOXA2 (ENSMMSG00000018910) #19	PAX1 (ENSMMSG00000018943) #21	NKX2-2 (ENSMMSG00000018973) #22	ENSMMSG00000018994	ENSMMSG00000019016	NKX2-4 (ENSMMSG00000019032) #23	XRN2 (ENSMMSG00000019064) #24	KIZ (ENSMMSG00000019151) #25	RALGAPA2 (ENSMMSG00000019313) #26	INSM1 (ENSMMSG00000019511) #27	ENSMMSG00000019522	ENSMMSG00000019535 #28	ENSMMSG00000019564 #28	CRNKL1 (ENSMMSG00000019594) #29	NAA20 (ENSMMSG00000019613) #30	RIN2 (ENSMMSG00000019665) #31	SLC24A3 (ENSMMSG00000019736) #33	SCP2D1 (ENSMMSG00000019818) #34
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000023900 #8	ENSCHYG00000023874 #9	ENSCHYG00000023860 #10	ENSCHYG00000023824 #11	ENSCHYG00000023804 #12	NAPB (ENSCHYG00000023659) #13	GZF1 (ENSCHYG00000023598) #14	NXT1 (ENSCHYG00000023576) #15	CD93 (ENSCHYG00000023556) #17	THBD (ENSCHYG00000023542)	ENSCHYG00000023501	ENSCHYG00000023462 #18	FOXA2 (ENSCHYG00000023420) #19	PAX1 (ENSCHYG00000023364) #21	ENSCHYG00000023344	NKX2-2 (ENSCHYG00000023304) #22	NKX2-4 (ENSCHYG00000023282) #23	XRN2 (ENSCHYG00000022819) #24	ENSCHYG00000022761	ENSCHYG00000022734	KIZ (ENSCHYG00000022176) #25	RALGAPA2 (ENSCHYG00000021147) #26	INSM1 (ENSCHYG00000021030) #27	CFAP61 (ENSCHYG00000020914) #28	CRNKL1 (ENSCHYG00000020782) #29	NAA20 (ENSCHYG00000020635) #30	RIN2 (ENSCHYG00000020319) #31	ENSCHYG00000020275	SLC24A3 (ENSCHYG00000020129) #33	SCP2D1 (ENSCHYG00000020102) #34	DTD1 (ENSCHYG00000019989) #35
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Blue whale	MODERN SPECIES	6	ENSBMSG00010012402 #7	CST8 (ENSBMSG00010012422) #8	ENSBMSG00010012475 #9	ENSBMSG00010012491 #10	CST11 (ENSBMSG00010012502) #11	CSTL1 (ENSBMSG00010012521) #12	NAPB (ENSBMSG00010012544) #13	ENSBMSG00010012568 #14	ENSBMSG00010012580 #14	NXT1 (ENSBMSG00010012589) #15	CD93 (ENSBMSG00010012595) #17	THBD (ENSBMSG00010012612)	SSTR4 (ENSBMSG00010013828)	FOXA2 (ENSBMSG00010013859) #19	PAX1 (ENSBMSG00010013891) #21	NKX2-2 (ENSBMSG00010013921) #22	NKX2-4 (ENSBMSG00010013938) #23	XRN2 (ENSBMSG00010014058) #24	KIZ (ENSBMSG00010014281) #25	RALGAPA2 (ENSBMSG00010014396) #26	INSM1 (ENSBMSG00010014572) #27	CFAP61 (ENSBMSG00010014638) #28	CRNKL1 (ENSBMSG00010014711) #29	NAA20 (ENSBMSG00010014762) #30	RIN2 (ENSBMSG00010014833) #31	SLC24A3 (ENSBMSG00010014883) #33	DTD1 (ENSBMSG00010014971) #35	SMIM26 (ENSBMSG00010015007) #36	SEC23B (ENSBMSG00010015074) #37	RBBP9 (ENSBMSG00010015177)	POLR3F (ENSBMSG00010015197)
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Sperm whale	MODERN SPECIES	5	APMAP (ENSPCTG00005009088)	CST7 (ENSPCTG00005009166)	ENSPCTG00005009228	ENSPCTG00005009273 #13	CSTL1 (ENSPCTG00005009306) #12	CST11 (ENSPCTG00005009381) #11	ENSPCTG00005009442 #10	ENSPCTG00005009487 #7	ENSPCTG00005009530	ENSPCTG00005009585	CST3 (ENSPCTG00005009637)	CD93 (ENSPCTG00005009671) #17	SSTR4 (ENSPCTG00005009716)	FOXA2 (ENSPCTG00005009780) #19	PAX1 (ENSPCTG00005009858) #21	NKX2-2 (ENSPCTG00005009931) #22	NKX2-4 (ENSPCTG00005009959) #23	XRN2 (ENSPCTG00005010006) #24	KIZ (ENSPCTG00005010162) #25	RALGAPA2 (ENSPCTG00005010848) #26	INSM1 (ENSPCTG00005011042) #27	CFAP61 (ENSPCTG00005011086) #28	CRNKL1 (ENSPCTG00005011230) #29	NAA20 (ENSPCTG00005011278) #30	ENSPCTG00005011375 #31	SLC24A3 (ENSPCTG00005011433) #33	SCP2D1 (ENSPCTG00005011622) #34	DTD1 (ENSPCTG00005011639) #35	SMIM26 (ENSPCTG00005011687) #36	SEC23B (ENSPCTG00005011745) #37	RBBP9 (ENSPCTG00005011839)
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36
Dolphin	MODERN SPECIES	2997																NKX2-2 (ENSTTRG00000009146) #22	XRN2 (ENSTTRG00000009087) #24	KIZ (ENSTTRG00000009024) #25
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00940000167996	ENSGT00390000004987 #28	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34
Vaquita	MODERN SPECIES	6	ACSS1 (ENSPSNG00000010625)	APMAP (ENSPSNG00000010757)	CST7 (ENSPSNG00000010836)	SYNDIG1 (ENSPSNG00000010897)	CST3 (ENSPSNG00000010957)	ENSPSNG00000011009	ENSPSNG00000011147 #7	ENSPSNG00000011208 #13	GZF1 (ENSPSNG00000011314) #14	NXT1 (ENSPSNG00000011355) #15	CD93 (ENSPSNG00000011407) #17	THBD (ENSPSNG00000011441)	SSTR4 (ENSPSNG00000011467)	FOXA2 (ENSPSNG00000004696) #19	PAX1 (ENSPSNG00000004773) #21	NKX2-2 (ENSPSNG00000004832) #22	NKX2-4 (ENSPSNG00000004868) #23	XRN2 (ENSPSNG00000004918) #24	KIZ (ENSPSNG00000005041) #25	ENSPSNG00000005168 #26	ENSPSNG00000005197 #26	INSM1 (ENSPSNG00000005223) #27	ENSPSNG00000005235	ENSPSNG00000005250 #28	ENSPSNG00000005292 #28	BLCAP (ENSPSNG00000005346)	ENSPSNG00000005363	CRNKL1 (ENSPSNG00000005386) #29	NAA20 (ENSPSNG00000005428) #30	RIN2 (ENSPSNG00000005508) #31	SLC24A3 (ENSPSNG00000005554) #33
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877.j	ENSGT00940000163249 #7	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000156819.a.a	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT01000000221541	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35
Narwhal	MODERN SPECIES	299	CST7 (ENSMMNG00015013746)	SYNDIG1 (ENSMMNG00015013754)	CST3 (ENSMMNG00015013767)	ENSMMNG00015013782	ENSMMNG00015013807 #7	CST11 (ENSMMNG00015013816) #11	CSTL1 (ENSMMNG00015013827) #12	ENSMMNG00015013840 #13	GZF1 (ENSMMNG00015013857) #14	NXT1 (ENSMMNG00015013866) #15	CD93 (ENSMMNG00015013869) #17	THBD (ENSMMNG00015013881)	SSTR4 (ENSMMNG00015013888)	FOXA2 (ENSMMNG00015013909) #19	PAX1 (ENSMMNG00015013924) #21	NKX2-2 (ENSMMNG00015013937) #22	NKX2-4 (ENSMMNG00015013943) #23	XRN2 (ENSMMNG00015013954) #24	KIZ (ENSMMNG00015014032) #25	RALGAPA2 (ENSMMNG00015014137) #26	INSM1 (ENSMMNG00015014194) #27	CFAP61 (ENSMMNG00015014206) #28	ENSMMNG00015014237	ENSMMNG00015014247	CRNKL1 (ENSMMNG00015014256) #29	NAA20 (ENSMMNG00015014274) #30	RIN2 (ENSMMNG00015014306) #31	SLC24A3 (ENSMMNG00015014333) #33	SCP2D1 (ENSMMNG00015014357) #34	DTD1 (ENSMMNG00015014368) #35	SMIM26 (ENSMMNG00015014382) #36
Beluga whale	MODERN SPECIES	48	SYNDIG1 (ENSDLEG00000004982)	CST3 (ENSDLEG00000004985)	ENSDLEG00000005018	ENSDLEG00000005035 #7	ENSDLEG00000005044 #10	CST11 (ENSDLEG00000005067) #11	CSTL1 (ENSDLEG00000005075) #12	ENSDLEG00000005080 #13	GZF1 (ENSDLEG00000005091) #14	NXT1 (ENSDLEG00000005096) #15	CD93 (ENSDLEG00000005100) #17	THBD (ENSDLEG00000005104)	SSTR4 (ENSDLEG00000005108)	FOXA2 (ENSDLEG00000005115) #19	PAX1 (ENSDLEG00000005123) #21	NKX2-2 (ENSDLEG00000005132) #22	NKX2-4 (ENSDLEG00000005154) #23	XRN2 (ENSDLEG00000005166) #24	KIZ (ENSDLEG00000005207) #25	RALGAPA2 (ENSDLEG00000005252) #26	CFAP61 (ENSDLEG00000005301) #28	ENSDLEG00000005319	ENSDLEG00000005324	CRNKL1 (ENSDLEG00000005333) #29	NAA20 (ENSDLEG00000005370) #30	RIN2 (ENSDLEG00000005378) #31	SLC24A3 (ENSDLEG00000005408) #33	ENSDLEG00000005476	SCP2D1 (ENSDLEG00000005480) #34	DTD1 (ENSDLEG00000005506) #35	SMIM26 (ENSDLEG00000005510) #36
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00940000162636.B #10	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000166261	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861	ENSGT00390000009679	ENSGT00390000000549
Arabian camel	MODERN SPECIES	10	ENSCDRG00005019533	ENSCDRG00005019539	ENSCDRG00005019553 #7	CST8 (ENSCDRG00005019565) #8	ENSCDRG00005019579 #9	ENSCDRG00005019599 #10	ENSCDRG00005019617 #11	CSTL1 (ENSCDRG00005019624) #12	ENSCDRG00005019640 #13	GZF1 (ENSCDRG00005019674) #14	ENSCDRG00005019685 #15	CD93 (ENSCDRG00005019688) #17	ENSCDRG00005019694	FOXA2 (ENSCDRG00005019700) #19	PAX1 (ENSCDRG00005019717) #21	NKX2-2 (ENSCDRG00005019726) #22	XRN2 (ENSCDRG00005019738) #24	KIZ (ENSCDRG00005019794) #25	ENSCDRG00005020052 #26	ENSCDRG00005020129 #26	CFAP61 (ENSCDRG00005020211) #28	CRNKL1 (ENSCDRG00005020237) #29	NAA20 (ENSCDRG00005020249) #30	RIN2 (ENSCDRG00005020269) #31	SLC24A3 (ENSCDRG00005020283) #33	SCP2D1 (ENSCDRG00005020314) #34	DTD1 (ENSCDRG00005003474) #35	SMIM26 (ENSCDRG00005003504) #36	SEC23B (ENSCDRG00005003558) #37	RBBP9 (ENSCDRG00005003649)	POLR3F (ENSCDRG00005003691)
Suina	ANCESTRAL SPECIES	9	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00940000161877	ENSGT00940000163249 #7	ENSGT00940000162294 #8	ENSGT00940000165454 #9	ENSGT00910000144356 #11	ENSGT00900000141212 #12	ENSGT00390000005826.a.b #13	ENSGT00870000136554 #14	ENSGT00940000162041 #15	ENSGT00940000156996 #17	ENSGT00940000163276	ENSGT00940000155999 #19	ENSGT00940000159137 #21	ENSGT00940000159727 #22	ENSGT00940000162247 #23	ENSGT00670000098098 #24	ENSGT00390000010121 #25	ENSGT00950000183139.A #26	ENSGT00940000162552 #27	ENSGT00390000004987 #28	ENSGT00550000074931 #29	ENSGT00550000075046 #30	ENSGT00940000154866.B #31	ENSGT01030000234532.A.a.a.b #33	ENSGT00940000154327.b.e.b #34	ENSGT00940000153431.b #35	ENSGT00860000134050 #36	ENSGT00390000006916.c #37	ENSGT00390000014861
Pig	MODERN SPECIES	8	SYNDIG1 (ENSSSCG00000007130)	CST3 (ENSSSCG00000037360)	CST9L (ENSSSCG00000029289)	ENSSSCG00000007125 #7	ENSSSCG00000007124 #8	ENSSSCG00000007123 #9	CST11 (ENSSSCG00000007122) #11	CSTL1 (ENSSSCG00000007121) #12	NAPB (ENSSSCG00000031219) #13	GZF1 (ENSSSCG00000007117) #14	NXT1 (ENSSSCG00000007119) #15	CD93 (ENSSSCG00000007116) #17	THBD (ENSSSCG00000053422)	FOXA2 (ENSSSCG00000007114) #19	PAX1 (ENSSSCG00000007112) #21	NKX2-2 (ENSSSCG00000040017) #22	NKX2-4 (ENSSSCG00000007110) #23	XRN2 (ENSSSCG00000007109) #24	KIZ (ENSSSCG00000007108) #25	ENSSSCG00000048962	RALGAPA2 (ENSSSCG00000026506) #26	INSM1 (ENSSSCG00000062159) #27	CFAP61 (ENSSSCG00000038858) #28	CRNKL1 (ENSSSCG00000038587) #29	NAA20 (ENSSSCG00000028132) #30	ENSSSCG00000028004 #31	SLC24A3 (ENSSSCG00000007100) #33	SCP2D1 (ENSSSCG00000007099) #34	DTD1 (ENSSSCG00000007098) #35	SMIM26 (ENSSSCG00000025589) #36	SEC23B (ENSSSCG00000007097) #37
Chacoan peccary	MODERN SPECIES	801	SYNDIG1 (ENSCWAG00000016959)	CST3 (ENSCWAG00000016979)	ENSCWAG00000017004	ENSCWAG00000017060 #7	CST8 (ENSCWAG00000017086) #8	ENSCWAG00000017127 #9	CST11 (ENSCWAG00000017158) #11	CSTL1 (ENSCWAG00000017189) #12	NAPB (ENSCWAG00000017225) #13	GZF1 (ENSCWAG00000017910) #14	NXT1 (ENSCWAG00000017956) #15	CD93 (ENSCWAG00000017965) #17	THBD (ENSCWAG00000017996)	FOXA2 (ENSCWAG00000007985) #19	PAX1 (ENSCWAG00000008052) #21	NKX2-2 (ENSCWAG00000008122) #22	NKX2-4 (ENSCWAG00000008162) #23	XRN2 (ENSCWAG00000008201) #24	KIZ (ENSCWAG00000008351) #25	RALGAPA2 (ENSCWAG00000008863) #26	INSM1 (ENSCWAG00000009223) #27	CFAP61 (ENSCWAG00000009261) #28	CRNKL1 (ENSCWAG00000009575) #29	NAA20 (ENSCWAG00000009645) #30	ENSCWAG00000009830 #31	SLC24A3 (ENSCWAG00000009885) #33	SCP2D1 (ENSCWAG00000010002) #34	DTD1 (ENSCWAG00000010021) #35	SMIM26 (ENSCWAG00000010058) #36	SEC23B (ENSCWAG00000010080) #37	RBBP9 (ENSCWAG00000010152)