Rodentia_B	ANCESTRAL SPECIES	1	ENSGT01030000234760	ENSGT00940000158479	ENSGT00940000156339 #7	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT00940000165476 #30	ENSGT01100000263482.C.c.b.a.b.a #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879 #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37	ENSGT00940000153818.a.b.a.b
Myomorpha	ANCESTRAL SPECIES		ENSGT01030000234760	ENSGT00940000158479	ENSGT00940000156339 #7	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT00940000165476 #30	ENSGT01100000263482.C.c.b.a.b.a #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879 #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37	ENSGT00940000153818.a.b.a.b
Muroidea	ANCESTRAL SPECIES		ENSGT01030000234760	ENSGT00940000158479	ENSGT00940000156339 #7	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a #31	ENSGT00940000165476 #30	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879 #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37	ENSGT00940000153818.a.b.a.b
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000156339 #7	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879 #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37	ENSGT00940000153818.a.b.a.b
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000156339 #7	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.e #34	ENSGT00520000060616 #36	ENSGT00390000016675 #37	ENSGT00940000153818.a.b.a.b
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000156339 #7	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT00940000165476.d #30	ENSGT00940000165476.c ##30	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.e #34	ENSGT00530000064879.f #35	ENSGT00520000060616 #36
Chinese hamster chok1gshd	MODERN SPECIES	33	Cct6b (ENSCGRG00001020850) #7	Zfp830 (ENSCGRG00001003631) #8	Lig3 (ENSCGRG00001004370) #9	Rffl (ENSCGRG00001019316) #10	Rad51d (ENSCGRG00001012167) #11	Fndc8 (ENSCGRG00001013060) #12	Nle1 (ENSCGRG00001009877) #13	Unc45b (ENSCGRG00001022400) #14	Slfn5 (ENSCGRG00001016905) #15	Slfn9 (ENSCGRG00001021962) #16	Slfn2 (ENSCGRG00001022663) #17	Slfn1 (ENSCGRG00001009249) #18	ENSCGRG00001019431 #19	Slfn14 (ENSCGRG00001017464) #20	Pex12 (ENSCGRG00001019900) #21	Ap2b1 (ENSCGRG00001020053) #22	Rasl10b (ENSCGRG00001010269) #23	Gas2l2 (ENSCGRG00001022937) #24	1700020L24Rik (ENSCGRG00001006404) #25	Mmp28 (ENSCGRG00001013370) #26	Taf15 (ENSCGRG00001012011) #27	Heatr9 (ENSCGRG00001019308) #28	Ccl5 (ENSCGRG00001017129) #29	ENSCGRG00001017750 #30	Ccl6 (ENSCGRG00001008290) #31	Ccl3 (ENSCGRG00001019421) #32	Ccl4 (ENSCGRG00001020791) #33	ENSCGRG00001018407 #34	ENSCGRG00001019205 #35	Wfdc21 (ENSCGRG00001020449) #36	Heatr6 (ENSCGRG00001000753) #37
Golden Hamster	MODERN SPECIES	684	ENSMAUG00000013646 ##33	Tmem132e (ENSMAUG00000016009)	Cct6b (ENSMAUG00000001673) #7	Zfp830 (ENSMAUG00000012194) #8	Lig3 (ENSMAUG00000020082) #9	Rffl (ENSMAUG00000003967) #10	Rad51d (ENSMAUG00000009497) #11	Fndc8 (ENSMAUG00000016080) #12	Nle1 (ENSMAUG00000016623) #13	Unc45b (ENSMAUG00000011322) #14	ENSMAUG00000009126 #15	Slfn9 (ENSMAUG00000013430) #16	Slfn1 (ENSMAUG00000003013) #18	Slfn14 (ENSMAUG00000020439) #20	Pex12 (ENSMAUG00000004768) #21	Ap2b1 (ENSMAUG00000021295) #22	Rasl10b (ENSMAUG00000011536) #23	Gas2l2 (ENSMAUG00000001264) #24	ENSMAUG00000018386 #27	Heatr9 (ENSMAUG00000019408) #28	Ccl5 (ENSMAUG00000000781) #29	ENSMAUG00000021412 #30	ENSMAUG00000015635 ##30	Ccl3 (ENSMAUG00000021167) #32	Ccl4 (ENSMAUG00000020742) #33	ENSMAUG00000009975	Wfdc21 (ENSMAUG00000018673) #36	Heatr6 (ENSMAUG00000009627) #37	Hnf1b (ENSMAUG00000009573)	ENSMAUG00000007943	Ddx52 (ENSMAUG00000021084)
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000158479	ENSGT00940000156339 #7	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.e #34	ENSGT00520000060616 #36	ENSGT00390000016675 #37	ENSGT00940000153818.a.b.a.b
Northern American deer mouse	MODERN SPECIES	21	Tmem132e (ENSPEMG00000016046)	Cct6b (ENSPEMG00000022000) #7	Zfp830 (ENSPEMG00000024107) #8	Lig3 (ENSPEMG00000021826) #9	Rffl (ENSPEMG00000023690) #10	Rad51d (ENSPEMG00000022893) #11	Fndc8 (ENSPEMG00000012327) #12	Nle1 (ENSPEMG00000023993) #13	Unc45b (ENSPEMG00000008983) #14	Slfn5 (ENSPEMG00000021448) #15	Slfn9 (ENSPEMG00000010005) #16	ENSPEMG00000024894	ENSPEMG00000010010	Slfn14 (ENSPEMG00000012902) #20	Pex12 (ENSPEMG00000030925) #21	Ap2b1 (ENSPEMG00000018294) #22	Rasl10b (ENSPEMG00000027697) #23	Gas2l2 (ENSPEMG00000018233) #24	1700020L24Rik (ENSPEMG00000013417) #25	Mmp28 (ENSPEMG00000019080) #26	Taf15 (ENSPEMG00000018715) #27	Heatr9 (ENSPEMG00000009167) #28	Ccl5 (ENSPEMG00000008561) #29	Ccl9 (ENSPEMG00000028232) ##33	Ccl6 (ENSPEMG00000008169) #31	Ccl3 (ENSPEMG00000028000) #32	ENSPEMG00000030825 #33	ENSPEMG00000026681 #34	ENSPEMG00000027305 #33	ENSPEMG00000025016 #33	ENSPEMG00000028019 #33
Prairie vole	MODERN SPECIES	15	Tmem132e (ENSMOCG00000017883)	Cct6b (ENSMOCG00000015382) #7	Zfp830 (ENSMOCG00000002661) #8	Lig3 (ENSMOCG00000013887) #9	Rffl (ENSMOCG00000005235) #10	Rad51d (ENSMOCG00000019246) #11	Fndc8 (ENSMOCG00000016181) #12	Nle1 (ENSMOCG00000005383) #13	Unc45b (ENSMOCG00000016526) #14	Slfn5 (ENSMOCG00000010517) #15	ENSMOCG00000018543 #16	Slfn2 (ENSMOCG00000021779) #17	Slfn1 (ENSMOCG00000005408) #18	Slfn14 (ENSMOCG00000008378) #20	Pex12 (ENSMOCG00000016233) #21	Ap2b1 (ENSMOCG00000014475) #22	Rasl10b (ENSMOCG00000001964) #23	Gas2l2 (ENSMOCG00000005581) #24	1700020L24Rik (ENSMOCG00000019897) #25	Mmp28 (ENSMOCG00000018460) #26	Taf15 (ENSMOCG00000015121) #27	Heatr9 (ENSMOCG00000009616) #28	Ccl5 (ENSMOCG00000020386) #29	ENSMOCG00000002418 #30	ENSMOCG00000012772 ##30	ENSMOCG00000013583 #32	Ccl4 (ENSMOCG00000012149) #33	ENSMOCG00000013687 #34	ENSMOCG00000016372	Wfdc21 (ENSMOCG00000019007) #36	Heatr6 (ENSMOCG00000015431) #37
Murinae	ANCESTRAL SPECIES	6	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00950000185966	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.g #35	ENSGT00530000064879.h #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37
Mus	ANCESTRAL SPECIES	2	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00950000185966	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.g #35	ENSGT00530000064879.h #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00950000185966	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b.a #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.g.c #35	ENSGT00530000064879.h #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00950000185966	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b.b #19	ENSGT00410000025651.A.b.a.a.b.e.b.a #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.g.c #35	ENSGT00530000064879.h #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37
Mouse	MODERN SPECIES	2	Lig3 (ENSMUSG00000020697) #9	Rffl (ENSMUSG00000020696) #10	Rad51d (ENSMUSG00000018841) #11	Fndc8 (ENSMUSG00000018844) #12	Nle1 (ENSMUSG00000020692) #13	Unc45b (ENSMUSG00000018845) #14	Slfn5 (ENSMUSG00000054404) #15	Slfn9 (ENSMUSG00000069793) #16	Slfn8 (ENSMUSG00000035208) #16	Slfn2 (ENSMUSG00000072620) #17	Slfn1 (ENSMUSG00000078763) #18	Slfn4 (ENSMUSG00000000204) #19	Slfn3 (ENSMUSG00000018986) #19	Slfn14 (ENSMUSG00000082101) #20	Pex12 (ENSMUSG00000018733) #21	Ap2b1 (ENSMUSG00000035152) #22	Rasl10b (ENSMUSG00000020684) #23	Gas2l2 (ENSMUSG00000020686) #24	1700020L24Rik (ENSMUSG00000035085) #25	Mmp28 (ENSMUSG00000020682) #26	Taf15 (ENSMUSG00000020680) #27	Heatr9 (ENSMUSG00000018925) #28	Ccl5 (ENSMUSG00000035042) #29	Ccl9 (ENSMUSG00000019122) ##33	Ccl6 (ENSMUSG00000018927) #31	Ccl3 (ENSMUSG00000000982) #32	Ccl4 (ENSMUSG00000018930) #33	Wfdc17 (ENSMUSG00000069792) #35	Wfdc18 (ENSMUSG00000000983) #35	Wfdc21 (ENSMUSG00000051748) #36	Heatr6 (ENSMUSG00000000976) #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000012151 #8	ENSGT00940000156492 #9	ENSGT00390000012719.a #10	ENSGT00940000159095 #11	ENSGT00390000006458 #12	ENSGT00940000157881 #13	ENSGT00940000157654 #14	ENSGT00950000185966	ENSGT00410000025651.A.b.a.a.a.b #15	ENSGT00410000025651.A.b.a.a.a.a #16	ENSGT00410000025651.A.b.a.a.b.e.a #17	ENSGT00410000025651.A.b.a.a.b.f #18	ENSGT00410000025651.A.b.a.a.b.e.b.a #19	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.d #22	ENSGT00940000160764 #23	ENSGT00940000162866 #24	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.C.c.b.a.b.a.m ##33	ENSGT01100000263482.C.c.b.a.b.a.n #31	ENSGT01100000263482.C.c.b.b.a.b #32	ENSGT01100000263482.C.c.a #33	ENSGT00530000064879.g.c #35	ENSGT00530000064879.h #35	ENSGT00520000060616 #36	ENSGT00390000016675 #37
Steppe mouse	MODERN SPECIES	3305													ENSMSIG00000012844 #19	Slfn14 (ENSMSIG00000012821) #20	Pex12 (ENSMSIG00000012790) #21	Ap2b1 (ENSMSIG00000012708) #22	Rasl10b (ENSMSIG00000012687) #23	Gas2l2 (ENSMSIG00000012668) #24	1700020L24Rik (ENSMSIG00000012643) #25	Mmp28 (ENSMSIG00000012526) #26	Taf15 (ENSMSIG00000012461) #27	Heatr9 (ENSMSIG00000012418) #28	Ccl5 (ENSMSIG00000012408) #29	Ccl9 (ENSMSIG00000012396) ##33	Ccl6 (ENSMSIG00000012387) #31	Ccl3 (ENSMSIG00000012367) #32	Ccl4 (ENSMSIG00000012352) #33	ENSMSIG00000012344 #35	ENSMSIG00000012332	ENSMSIG00000012323	Wfdc17 (ENSMSIG00000012316) #35
spretus	MODERN SPECIES	2	Lig3 (MGP_SPRETEiJ_G0017700) #9	Rffl (MGP_SPRETEiJ_G0017701) #10	Rad51d (MGP_SPRETEiJ_G0017702) #11	Fndc8 (MGP_SPRETEiJ_G0017703) #12	Nle1 (MGP_SPRETEiJ_G0017704) #13	Unc45b (MGP_SPRETEiJ_G0017705) #14	Slfn5 (MGP_SPRETEiJ_G0017706) #15	MGP_SPRETEiJ_G0017707 #16	MGP_SPRETEiJ_G0017708 #16	Slfn2 (MGP_SPRETEiJ_G0017709) #17	Slfn1 (MGP_SPRETEiJ_G0017710) #18	MGP_SPRETEiJ_G0017711 #19	MGP_SPRETEiJ_G0017712 #19	Slfn14 (MGP_SPRETEiJ_G0017713) #20	Pex12 (MGP_SPRETEiJ_G0017714) #21	Ap2b1 (MGP_SPRETEiJ_G0017715) #22	Rasl10b (MGP_SPRETEiJ_G0017716) #23	Gas2l2 (MGP_SPRETEiJ_G0017717) #24	1700020L24Rik (MGP_SPRETEiJ_G0017718) #25	Mmp28 (MGP_SPRETEiJ_G0017719) #26	Taf15 (MGP_SPRETEiJ_G0017720) #27	Heatr9 (MGP_SPRETEiJ_G0017721) #28	Ccl5 (MGP_SPRETEiJ_G0017722) #29	Ccl9 (MGP_SPRETEiJ_G0017723) ##33	Ccl6 (MGP_SPRETEiJ_G0017724) #31	MGP_SPRETEiJ_G0017725	Ccl3 (MGP_SPRETEiJ_G0017726) #32	Ccl4 (MGP_SPRETEiJ_G0017727) #33	Wfdc17 (MGP_SPRETEiJ_G0017728) #35	Wfdc18 (MGP_SPRETEiJ_G0017729) #35	Wfdc21 (MGP_SPRETEiJ_G0017730) #36
Ryukyu mouse	MODERN SPECIES	2	Lig3 (MGP_CAROLIEiJ_G0016856) #9	Rffl (MGP_CAROLIEiJ_G0016857) #10	Rad51d (MGP_CAROLIEiJ_G0016858) #11	Fndc8 (MGP_CAROLIEiJ_G0016859) #12	Nle1 (MGP_CAROLIEiJ_G0016860) #13	Unc45b (MGP_CAROLIEiJ_G0016861) #14	MGP_CAROLIEiJ_G0016862 #15	MGP_CAROLIEiJ_G0016863 #16	MGP_CAROLIEiJ_G0016864 #16	Slfn2 (MGP_CAROLIEiJ_G0016865) #17	Slfn1 (MGP_CAROLIEiJ_G0016866) #18	MGP_CAROLIEiJ_G0016867 #19	MGP_CAROLIEiJ_G0016868 #19	Slfn14 (MGP_CAROLIEiJ_G0016869) #20	Pex12 (MGP_CAROLIEiJ_G0016870) #21	Ap2b1 (MGP_CAROLIEiJ_G0016871) #22	Rasl10b (MGP_CAROLIEiJ_G0016872) #23	Gas2l2 (MGP_CAROLIEiJ_G0016873) #24	1700020L24Rik (MGP_CAROLIEiJ_G0016874) #25	Mmp28 (MGP_CAROLIEiJ_G0016875) #26	Taf15 (MGP_CAROLIEiJ_G0016876) #27	Heatr9 (MGP_CAROLIEiJ_G0016877) #28	Ccl5 (MGP_CAROLIEiJ_G0016878) #29	Ccl9 (MGP_CAROLIEiJ_G0016879) ##33	Ccl6 (MGP_CAROLIEiJ_G0016880) #31	Ccl3 (MGP_CAROLIEiJ_G0016881) #32	Ccl4 (MGP_CAROLIEiJ_G0016882) #33	Wfdc17 (MGP_CAROLIEiJ_G0016883) #35	Wfdc18 (MGP_CAROLIEiJ_G0016884) #35	Wfdc21 (MGP_CAROLIEiJ_G0016885) #36	Heatr6 (MGP_CAROLIEiJ_G0016886) #37
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0017987 ##33	MGP_PahariEiJ_G0017988 ##33	Ccl1 (MGP_PahariEiJ_G0017989)	Tmem132e (MGP_PahariEiJ_G0017990)	Cct6b (MGP_PahariEiJ_G0017991) #7	Zfp830 (MGP_PahariEiJ_G0017992) #8	Lig3 (MGP_PahariEiJ_G0017993) #9	Rffl (MGP_PahariEiJ_G0017994) #10	Rad51d (MGP_PahariEiJ_G0017995) #11	Fndc8 (MGP_PahariEiJ_G0017996) #12	Nle1 (MGP_PahariEiJ_G0017997) #13	Unc45b (MGP_PahariEiJ_G0017998) #14	Slfn5 (MGP_PahariEiJ_G0017999) #15	Slfn14 (MGP_PahariEiJ_G0018000) #20	Pex12 (MGP_PahariEiJ_G0018001) #21	Ap2b1 (MGP_PahariEiJ_G0018002) #22	Rasl10b (MGP_PahariEiJ_G0018003) #23	Gas2l2 (MGP_PahariEiJ_G0018004) #24	1700020L24Rik (MGP_PahariEiJ_G0018005) #25	Mmp28 (MGP_PahariEiJ_G0018006) #26	Taf15 (MGP_PahariEiJ_G0018007) #27	Heatr9 (MGP_PahariEiJ_G0018008) #28	Ccl5 (MGP_PahariEiJ_G0018009) #29	Ccl9 (MGP_PahariEiJ_G0018010) ##33	Ccl6 (MGP_PahariEiJ_G0018011) #31	Ccl3 (MGP_PahariEiJ_G0018012) #32	Ccl4 (MGP_PahariEiJ_G0018013) #33	Wfdc21 (MGP_PahariEiJ_G0018015) #36	Heatr6 (MGP_PahariEiJ_G0018016) #37	Hnf1b (MGP_PahariEiJ_G0018017)	Ddx52 (MGP_PahariEiJ_G0018018)
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES	8	ENSRNOG00000065594	Nrsn1 (ENSRNOG00000017444)	Dcdc2 (ENSRNOG00000017511)	Mrs2 (ENSRNOG00000017545)	Gpld1 (ENSRNOG00000017702)	Aldh5a1 (ENSRNOG00000023538)	RGD1307443 (ENSRNOG00000018141)	Rpl37-ps1 (ENSRNOG00000063362)	Tdp2 (ENSRNOG00000018246)	Acot13 (ENSRNOG00000018415)	C17h6orf62-ps1 (ENSRNOG00000018456)	Gmnn (ENSRNOG00000018782)	Armh2 (ENSRNOG00000064812)	Ripor2 (ENSRNOG00000018804)	Cmahp (ENSRNOG00000003094)	ENSRNOG00000067245 #22	ENSRNOG00000064118 #22	Carmil1 (ENSRNOG00000016576)	Scgn (ENSRNOG00000016628)	H2ac1 (ENSRNOG00000065352)	H2bc1 (ENSRNOG00000069905)	Slc17a4 (ENSRNOG00000022505)	AABR07027750.1 (ENSRNOG00000042692)	Slc17a3 (ENSRNOG00000032745)	Slc17a2 (ENSRNOG00000017180)	H1f1 (ENSRNOG00000017175)	Hist1h3b (ENSRNOG00000068614)	Hist1h4m (ENSRNOG00000065263)	LOC102549173 (ENSRNOG00000066835)	H3c13 (ENSRNOG00000065054)	Hist1h2af (ENSRNOG00000022146)
Rat	MODERN SPECIES	8	Nrsn1 (ENSRNOG00000017444)	Dcdc2 (ENSRNOG00000017511)	Mrs2 (ENSRNOG00000017545)	Gpld1 (ENSRNOG00000017702)	Aldh5a1 (ENSRNOG00000023538)	RGD1307443 (ENSRNOG00000018141)	Rpl37-ps1 (ENSRNOG00000063362)	Tdp2 (ENSRNOG00000018246)	Acot13 (ENSRNOG00000018415)	C17h6orf62-ps1 (ENSRNOG00000018456)	Gmnn (ENSRNOG00000018782)	Armh2 (ENSRNOG00000064812)	Ripor2 (ENSRNOG00000018804)	Cmahp (ENSRNOG00000003094)	ENSRNOG00000067245 #22	ENSRNOG00000064118 #22	Carmil1 (ENSRNOG00000016576)	Scgn (ENSRNOG00000016628)	H2ac1 (ENSRNOG00000065352)	H2bc1 (ENSRNOG00000069905)	Slc17a4 (ENSRNOG00000022505)	AABR07027750.1 (ENSRNOG00000042692)	Slc17a3 (ENSRNOG00000032745)	Slc17a2 (ENSRNOG00000017180)	H1f1 (ENSRNOG00000017175)	Hist1h3b (ENSRNOG00000068614)	Hist1h4m (ENSRNOG00000065263)	LOC102549173 (ENSRNOG00000066835)	H3c13 (ENSRNOG00000065054)	Hist1h2af (ENSRNOG00000022146)	H1f2 (ENSRNOG00000067441)
Rat	DUPLICATION
Rat	MODERN SPECIES	1	Unc45b (ENSRNOG00000009466) #14	ENSRNOG00000062443	Slfn5 (ENSRNOG00000021719) #15	Slfn13 (ENSRNOG00000021412) #16	ENSRNOG00000063847	LOC108352183 (ENSRNOG00000037114)	Slfn2 (ENSRNOG00000037113) #17	Slfn1 (ENSRNOG00000048053) #18	Slfn4 (ENSRNOG00000057092)	Slfn4 (ENSRNOG00000063541) #19	LOC688925 (ENSRNOG00000032135)	AC118772.2 (ENSRNOG00000021357) #19	ENSRNOG00000062983 #19	AC118772.1 (ENSRNOG00000009709) #20	Pex12 (ENSRNOG00000009718) #21	Ap2b1 (ENSRNOG00000061543) #22	Rasl10b (ENSRNOG00000010302) #23	Gas2l2 (ENSRNOG00000047546) #24	LOC689039 (ENSRNOG00000049757) #25	Mmp28 (ENSRNOG00000047940) #26	Taf15 (ENSRNOG00000058393) #27	Heatr9 (ENSRNOG00000037100) #28	Ccl5 (ENSRNOG00000010906)	Ccl9 (ENSRNOG00000028548) ##33	Ccl6 (ENSRNOG00000030021) ##30	Ccl3 (ENSRNOG00000011205) #32	Ccl4 (ENSRNOG00000011406) #33	ENSRNOG00000070672	LOC103695128 (ENSRNOG00000051084)	LOC100909660 (ENSRNOG00000066869) #35	ENSRNOG00000066744
Rat	MODERN SPECIES		ENSRNOG00000066169	ENSRNOG00000068667	Zfp273l-ps1 (ENSRNOG00000046353)	LOC102551340 (ENSRNOG00000047145)	Spry3-ps1 (ENSRNOG00000064505)	Zfp748 (ENSRNOG00000069921)	LOC102549842 (ENSRNOG00000049259)	LOC102547287 (ENSRNOG00000016462)	RGD1566325 (ENSRNOG00000017963)	ENSRNOG00000068953	Zfp455l1 (ENSRNOG00000042308)	Mtrr (ENSRNOG00000017826)	Fastkd3 (ENSRNOG00000027422)	Cfap90 (ENSRNOG00000047406)	Adcy2 (ENSRNOG00000032150)	Ap2b1-ps1 (ENSRNOG00000017678) #22	Tent4a (ENSRNOG00000017613)	Srd5a1 (ENSRNOG00000017601)	Nsun2 (ENSRNOG00000017254)	Ube2ql1 (ENSRNOG00000034075)	Med10 (ENSRNOG00000017150)	Dlat-ps1 (ENSRNOG00000017095)	Ice1 (ENSRNOG00000023053)	Adamts16 (ENSRNOG00000016812)	Irx1 (ENSRNOG00000033609)	Irx2 (ENSRNOG00000012742)	Irx4 (ENSRNOG00000012720)	Ndufs6l1 (ENSRNOG00000062531)	Mrpl36 (ENSRNOG00000023407)	Lpcat1 (ENSRNOG00000017930)	Slc6a3 (ENSRNOG00000017302)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1422	Tmem132e (ENSNGAG00000014402)	ENSNGAG00000017447	Cct6b (ENSNGAG00000011636) #7	Zfp830 (ENSNGAG00000014849) #8	Lig3 (ENSNGAG00000019767) #9	Rffl (ENSNGAG00000017708) #10	Rad51d (ENSNGAG00000008118) #11	Fndc8 (ENSNGAG00000019921) #12	Nle1 (ENSNGAG00000012348) #13	Unc45b (ENSNGAG00000000238) #14	Slfn5 (ENSNGAG00000014194) #15	ENSNGAG00000020404 #16	Slfn14 (ENSNGAG00000011735) #20	ENSNGAG00000016398	ENSNGAG00000013242	ENSNGAG00000009444 #22	Rasl10b (ENSNGAG00000002106) #23	ENSNGAG00000019453	1700020L24Rik (ENSNGAG00000019913) #25	Mmp28 (ENSNGAG00000014473) #26	ENSNGAG00000015117	Taf15 (ENSNGAG00000017633) #27	Heatr9 (ENSNGAG00000011711) #28	Ccl5 (ENSNGAG00000003622) #29	ENSNGAG00000006220 #30	Ccl3 (ENSNGAG00000003991) #32	Ccl4 (ENSNGAG00000003228) #33	ENSNGAG00000017535	Wfdc21 (ENSNGAG00000012983) #36	Heatr6 (ENSNGAG00000016534) #37	Hnf1b (ENSNGAG00000017601)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1303										Rhou (ENSNGAG00000010199)	ENSNGAG00000013788	Rab4a (ENSNGAG00000020318)	Ccsap (ENSNGAG00000020516)	Acta1 (ENSNGAG00000008844)	Nup133 (ENSNGAG00000011857)	ENSNGAG00000016124 #22	Abcb10 (ENSNGAG00000005450)	Taf5l (ENSNGAG00000013058)	Urb2 (ENSNGAG00000016524)	ENSNGAG00000000097	Galnt2 (ENSNGAG00000017214)	Pgbd5 (ENSNGAG00000016041)	ENSNGAG00000013046	Agt (ENSNGAG00000014491)	Capn9 (ENSNGAG00000017031)	2310022B05Rik (ENSNGAG00000012261)	Ttc13 (ENSNGAG00000013995)	Arv1 (ENSNGAG00000007653)	Fam89a (ENSNGAG00000015567)	Trim67 (ENSNGAG00000000094)	2810004N23Rik (ENSNGAG00000001222)
Lesser Egyptian jerboa	MODERN SPECIES	112	Tmem132e (ENSJJAG00000018290)	Cct6b (ENSJJAG00000014826) #7	Zfp830 (ENSJJAG00000010210) #8	Lig3 (ENSJJAG00000003848) #9	Rffl (ENSJJAG00000020929) #10	Rad51d (ENSJJAG00000014931) #11	Fndc8 (ENSJJAG00000018336) #12	Nle1 (ENSJJAG00000008356) #13	Unc45b (ENSJJAG00000018066) #14	ENSJJAG00000016743	ENSJJAG00000020087 #16	ENSJJAG00000024250 #19	ENSJJAG00000018288	Slfn14 (ENSJJAG00000016028) #20	ENSJJAG00000008010	Ap2b1 (ENSJJAG00000023688) #22	Rasl10b (ENSJJAG00000011469) #23	ENSJJAG00000020015	1700020L24Rik (ENSJJAG00000011369) #25	Mmp28 (ENSJJAG00000009319) #26	Taf15 (ENSJJAG00000010606) #27	Heatr9 (ENSJJAG00000012557) #28	Ccl5 (ENSJJAG00000024069) #29	Ccl3 (ENSJJAG00000022032) #32	Ccl4 (ENSJJAG00000011404) #33	ENSJJAG00000023138	Wfdc21 (ENSJJAG00000014661) #36	Heatr6 (ENSJJAG00000012154) #37	Hnf1b (ENSJJAG00000011207)	Ddx52 (ENSJJAG00000021877)	Synrg (ENSJJAG00000021827)
Kangaroo rat	MODERN SPECIES	338							Cct6b (ENSDORG00000001249) #7	Lig3 (ENSDORG00000013422) #9	Rffl (ENSDORG00000013424) #10	Rad51d (ENSDORG00000024542) #11	Fndc8 (ENSDORG00000000843) #12	Nle1 (ENSDORG00000000845) #13	Unc45b (ENSDORG00000000847) #14	ENSDORG00000023333 #16	Pex12 (ENSDORG00000026935) #21	Ap2b1 (ENSDORG00000003803) #22	Rasl10b (ENSDORG00000003805) #23	ENSDORG00000026155	1700020L24Rik (ENSDORG00000003808) #25	Mmp28 (ENSDORG00000003809) #26	Taf15 (ENSDORG00000014619) #27	ENSDORG00000003141 #28	Ccl5 (ENSDORG00000007688) #29	Ccl4 (ENSDORG00000026295) #33	Wfdc21 (ENSDORG00000024216) #36	Heatr6 (ENSDORG00000011214) #37	Hnf1b (ENSDORG00000009669)	Ddx52 (ENSDORG00000004276)	Synrg (ENSDORG00000004275)	Dusp14 (ENSDORG00000025341)	Tada2a (ENSDORG00000009547)