Euteleostomi ANCESTRAL SPECIES 347 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT01070000257310 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 Sarcopterygii ANCESTRAL SPECIES 298 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00940000165977 ENSGT01070000257310 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 Tetrapoda ANCESTRAL SPECIES 82 ENSGT00510000047471 ENSGT00940000156831 ENSGT00940000161226 ENSGT00940000158514 ENSGT00940000161467 ENSGT00940000155974 ENSGT00940000153253.b.a ENSGT00940000153594.d ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00940000165977 ENSGT01070000257310 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT00940000155882.a.a ENSGT01030000235453 ENSGT01090000260061.c.a.c.a Amniota ANCESTRAL SPECIES 18 ENSGT00940000161467 ENSGT00940000155974 ENSGT00940000153253.b.a ENSGT00940000153594.d ENSGT01100000263482.A.b ##37 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.a ##20 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT00900000142991 ENSGT00940000155882.a.a Mammalia ANCESTRAL SPECIES 37 ENSGT01100000263482.C.c.b.b #37 ENSGT01100000263482.B #30 ENSGT01100000263482.D #29 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT00900000142991 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a Theria ANCESTRAL SPECIES 25 ENSGT00940000154991.a.b ENSGT01100000263482.A.a.a ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b ENSGT00550000074863 ENSGT00390000010789 Eutheria ANCESTRAL SPECIES 4 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 Boreoeutheria DUPLICATION Boreoeutheria ANCESTRAL SPECIES 4 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Euarchontoglires ANCESTRAL SPECIES 4 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Euarchontoglires_A ANCESTRAL SPECIES 4 ENSGT01100000263482.A.a.a.c.a ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 Glires ANCESTRAL SPECIES 3 ENSGT01100000263482.A.a.a.c.a ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.a.b #37 Rodentia ANCESTRAL SPECIES 4 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.a.b #37 Rodentia_A ANCESTRAL SPECIES 3 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00940000165476 ENSGT00960000187851 ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b ENSGT00550000074863 Sciuridae ANCESTRAL SPECIES 4 ENSGT01100000263482.A.a.a.c.a ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 Marmotini ANCESTRAL SPECIES 8 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00390000010003.ab #36 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00520000060616 Alpin marmot MODERN SPECIES 42 ENSMMMG00000018715 #18 SLFN13 (ENSMMMG00000018719) #19 SLFN14 (ENSMMMG00000018767) #20 PEX12 (ENSMMMG00000018771) #21 AP2B1 (ENSMMMG00000018789) #22 RASL10B (ENSMMMG00000018941) #23 ENSMMMG00000018962 #24 C17orf50 (ENSMMMG00000018963) #25 MMP28 (ENSMMMG00000018988) #26 TAF15 (ENSMMMG00000019003) #27 HEATR9 (ENSMMMG00000019012) #28 ENSMMMG00000019031 #29 CCL16 (ENSMMMG00000019034) #30 CCL14 (ENSMMMG00000019039) #31 ENSMMMG00000019047 #32 ENSMMMG00000019053 #33 ENSMMMG00000019056 #34 ENSMMMG00000019060 #35 ENSMMMG00000019088 #36 ENSMMMG00000019090 #37 Marmotini_b ANCESTRAL SPECIES 5 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00390000010003.ab #36 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00520000060616 Arctic ground squirrel MODERN SPECIES 742 PEX12 (ENSUPAG00010017569) #21 AP2B1 (ENSUPAG00010017425) #22 RASL10B (ENSUPAG00010017401) #23 ENSUPAG00010017391 ENSUPAG00010017381 #24 C17orf50 (ENSUPAG00010017373) #25 MMP28 (ENSUPAG00010017333) #26 TAF15 (ENSUPAG00010017298) #27 HEATR9 (ENSUPAG00010017281) #28 ENSUPAG00010017272 #29 CCL16 (ENSUPAG00010017264) #30 CCL14 (ENSUPAG00010017262) #31 ENSUPAG00010017258 #32 ENSUPAG00010017252 ##37 ENSUPAG00010017172 #37 ENSUPAG00010017167 #36 ENSUPAG00010017158 Squirrel MODERN SPECIES 90 PEX12 (ENSSTOG00000025573) #21 AP2B1 (ENSSTOG00000002031) #22 RASL10B (ENSSTOG00000021097) #23 ENSSTOG00000032802 #24 C17orf50 (ENSSTOG00000029437) #25 MMP28 (ENSSTOG00000020743) #26 TAF15 (ENSSTOG00000002081) #27 HEATR9 (ENSSTOG00000028751) #28 ENSSTOG00000015833 #29 CCL14 (ENSSTOG00000033490) #31 ENSSTOG00000034887 #32 ENSSTOG00000027899 #37 ENSSTOG00000031610 #36 ENSSTOG00000027458 #37 ENSSTOG00000013313 ##37 ENSSTOG00000032858 HEATR6 (ENSSTOG00000026901) Eurasian red squirrel MODERN SPECIES 12 CCT6B (ENSSVLG00005012972) ZNF830 (ENSSVLG00005012926) LIG3 (ENSSVLG00005012872) RFFL (ENSSVLG00005012713) RAD51D (ENSSVLG00005012550) FNDC8 (ENSSVLG00005012462) NLE1 (ENSSVLG00005012107) UNC45B (ENSSVLG00005011413) ENSSVLG00005011336 ##20 ENSSVLG00005011301 ENSSVLG00005011281 ##20 ENSSVLG00005011264 ##20 SLFN13 (ENSSVLG00005011190) #19 SLFN14 (ENSSVLG00005011129) #20 PEX12 (ENSSVLG00005011091) #21 AP2B1 (ENSSVLG00005010470) #22 RASL10B (ENSSVLG00005010407) #23 GAS2L2 (ENSSVLG00005010308) C17orf50 (ENSSVLG00005010248) #25 MMP28 (ENSSVLG00005010157) #26 TAF15 (ENSSVLG00005010110) #27 HEATR9 (ENSSVLG00005009904) #28 ENSSVLG00005009862 #29 CCL16 (ENSSVLG00005009830) #30 CCL14 (ENSSVLG00005009782) #31 ENSSVLG00005009747 #32 ENSSVLG00005009720 ENSSVLG00005009611 #37 ENSSVLG00005009573 #37 ENSSVLG00005009477 ##37 ENSSVLG00005009438 Hystricomorpha ANCESTRAL SPECIES 3 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.b ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000166945 Hystricomorpha_a ANCESTRAL SPECIES ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.b ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000166945 ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Guinea pig DUPLICATION Guinea pig MODERN SPECIES 32 ENSCPOG00000013468 ##37 CCL7 (ENSCPOG00000013035) ##37 CCL11 (ENSCPOG00000032138) ##37 ENSCPOG00000033402 ##37 TMEM132E (ENSCPOG00000001908) CCT6B (ENSCPOG00000002794) ZNF830 (ENSCPOG00000031218) LIG3 (ENSCPOG00000013032) RFFL (ENSCPOG00000022966) RAD51D (ENSCPOG00000025259) FNDC8 (ENSCPOG00000020325) NLE1 (ENSCPOG00000013116) UNC45B (ENSCPOG00000013117) SLFN5 (ENSCPOG00000011027) ##20 PEX12 (ENSCPOG00000039161) #21 ENSCPOG00000010238 #22 RASL10B (ENSCPOG00000031497) #23 ENSCPOG00000036328 #24 C17orf50 (ENSCPOG00000019600) #25 MMP28 (ENSCPOG00000031764) #26 ENSCPOG00000040326 #27 HEATR9 (ENSCPOG00000010117) #28 ENSCPOG00000008852 #29 CCL14 (ENSCPOG00000035450) #31 ENSCPOG00000039417 #32 ENSCPOG00000026400 #37 ENSCPOG00000037138 ##37 ENSCPOG00000033663 ##37 ENSCPOG00000032867 ##37 ENSCPOG00000035230 ENSCPOG00000036860 Guinea pig MODERN SPECIES 163 FAM169A (ENSCPOG00000025740) NSA2 (ENSCPOG00000030702) GFM2 (ENSCPOG00000006332) HEXB (ENSCPOG00000006324) ENSCPOG00000023166 #22 ENC1 (ENSCPOG00000004353) ARHGEF28 (ENSCPOG00000006680) UTP15 (ENSCPOG00000006669) ANKRA2 (ENSCPOG00000006571) ENSCPOG00000012832 ENSCPOG00000035195 TMEM174 (ENSCPOG00000002881) TMEM171 (ENSCPOG00000019983) FCHO2 (ENSCPOG00000005442) TNPO1 (ENSCPOG00000003540) ENSCPOG00000020216 Hystricomorpha_b ANCESTRAL SPECIES ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT01100000264661 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.b ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000166945 ENSGT00520000060616 ENSGT00390000016675 Long-tailed chinchilla MODERN SPECIES 188 ENSCLAG00000005107 ##37 ENSCLAG00000006411 TMEM132E (ENSCLAG00000006946) CCT6B (ENSCLAG00000014724) ZNF830 (ENSCLAG00000017672) LIG3 (ENSCLAG00000009138) RFFL (ENSCLAG00000010681) RAD51D (ENSCLAG00000004975) FNDC8 (ENSCLAG00000006982) NLE1 (ENSCLAG00000008143) UNC45B (ENSCLAG00000013212) ENSCLAG00000008166 #19 ENSCLAG00000017329 #18 SLFN14 (ENSCLAG00000004969) #20 PEX12 (ENSCLAG00000006085) #21 AP2B1 (ENSCLAG00000009660) #22 RASL10B (ENSCLAG00000016447) #23 GAS2L2 (ENSCLAG00000010014) C17orf50 (ENSCLAG00000011018) #25 MMP28 (ENSCLAG00000012449) #26 TAF15 (ENSCLAG00000008940) #27 HEATR9 (ENSCLAG00000010061) #28 ENSCLAG00000015541 #29 ENSCLAG00000014715 ENSCLAG00000007121 #32 ENSCLAG00000007367 ##37 Degu MODERN SPECIES 205 ENSODEG00000013102 SLFN14 (ENSODEG00000012242) #20 ENSODEG00000013257 AP2B1 (ENSODEG00000013913) #22 RASL10B (ENSODEG00000012407) #23 ENSODEG00000012204 #24 C17orf50 (ENSODEG00000012668) #25 MMP28 (ENSODEG00000016303) #26 ENSODEG00000012915 #27 HEATR9 (ENSODEG00000012621) #28 ENSODEG00000012792 #29 ENSODEG00000013298 ENSODEG00000013395 ##37 ENSODEG00000013198 ##37 ENSODEG00000013480 ##37 ENSODEG00000013109 HEATR6 (ENSODEG00000013428) HNF1B (ENSODEG00000012709) ENSODEG00000012382 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 12 ASIC2 (ENSHGLG00000000958) CCL2 (ENSHGLG00000034308) ##37 CCL11 (ENSHGLG00000001015) ##37 ENSHGLG00000001025 ##37 ENSHGLG00000042122 Lig3 (ENSHGLG00000001349) ENSHGLG00000001734 RAD51D (ENSHGLG00000001857) FNDC8 (ENSHGLG00000001963) NLE1 (ENSHGLG00000002006) UNC45B (ENSHGLG00000002117) ENSHGLG00000039133 SLFN14 (ENSHGLG00000002313) #20 ENSHGLG00000019904 PEX12 (ENSHGLG00000044826) #21 AP2B1 (ENSHGLG00000002411) #22 RASL10B (ENSHGLG00000038176) #23 ENSHGLG00000005151 #24 ENSHGLG00000036876 #25 ENSHGLG00000040978 #26 ENSHGLG00000005292 #27 ENSHGLG00000005395 #29 ENSHGLG00000047538 #30 ENSHGLG00000036900 #31 ENSHGLG00000050713 #32 CCL15 (ENSHGLG00000006092) #32 ENSHGLG00000006414 ##37 ENSHGLG00000036724 #37 ENSHGLG00000007508 OMG (ENSHGLG00000038199) EVI2B (ENSHGLG00000043351) Naked mole-rat female MODERN SPECIES 25 ENSHGLG00000033530 ENSHGLG00000002303 ENSHGLG00000002529 SMIM18 (ENSHGLG00000002636) ENSHGLG00000039655 ENSHGLG00000039496 GSR (ENSHGLG00000008420) ENSHGLG00000050810 ENSHGLG00000047725 UBXN8 (ENSHGLG00000037756) PPP2CB (ENSHGLG00000004398) TEX15 (ENSHGLG00000040015) ENSHGLG00000046666 PURG (ENSHGLG00000003706) WRN (ENSHGLG00000003638) ENSHGLG00000003390 #22 NRG1 (ENSHGLG00000004920) FUT10 (ENSHGLG00000003149) ENSHGLG00000004478 MAK16 (ENSHGLG00000002981) TTI2 (ENSHGLG00000002506) RNF122 (ENSHGLG00000035559) DUSP26 (ENSHGLG00000012175) ENSHGLG00000036058 UNC5D (ENSHGLG00000009719) ENSHGLG00000037018 KCNU1 (ENSHGLG00000015824) ENSHGLG00000007555 ZNF703 (ENSHGLG00000010999) ERLIN2 (ENSHGLG00000035041) PROSC (ENSHGLG00000041569) Rodentia_B ANCESTRAL SPECIES 1 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Myomorpha ANCESTRAL SPECIES ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Muroidea ANCESTRAL SPECIES ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Muroidea_A ANCESTRAL SPECIES 1 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Cricetidae ANCESTRAL SPECIES ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.e ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Cricetidae_B ANCESTRAL SPECIES ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.e ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Northern American deer mouse MODERN SPECIES 21 Tmem132e (ENSPEMG00000016046) Cct6b (ENSPEMG00000022000) Zfp830 (ENSPEMG00000024107) Lig3 (ENSPEMG00000021826) Rffl (ENSPEMG00000023690) Rad51d (ENSPEMG00000022893) Fndc8 (ENSPEMG00000012327) Nle1 (ENSPEMG00000023993) Unc45b (ENSPEMG00000008983) Slfn5 (ENSPEMG00000021448) ##20 Slfn9 (ENSPEMG00000010005) #19 ENSPEMG00000024894 ENSPEMG00000010010 Slfn14 (ENSPEMG00000012902) #20 Pex12 (ENSPEMG00000030925) #21 Ap2b1 (ENSPEMG00000018294) #22 Rasl10b (ENSPEMG00000027697) #23 Gas2l2 (ENSPEMG00000018233) 1700020L24Rik (ENSPEMG00000013417) #25 Mmp28 (ENSPEMG00000019080) #26 Taf15 (ENSPEMG00000018715) #27 Heatr9 (ENSPEMG00000009167) #28 Ccl5 (ENSPEMG00000008561) #29 Ccl9 (ENSPEMG00000028232) #32 Ccl6 (ENSPEMG00000008169) #32 Ccl3 (ENSPEMG00000028000) #37 ENSPEMG00000030825 ##37 ENSPEMG00000026681 ENSPEMG00000027305 ##37 ENSPEMG00000025016 ##37 ENSPEMG00000028019 ##37 Prairie vole MODERN SPECIES 15 Tmem132e (ENSMOCG00000017883) Cct6b (ENSMOCG00000015382) Zfp830 (ENSMOCG00000002661) Lig3 (ENSMOCG00000013887) Rffl (ENSMOCG00000005235) Rad51d (ENSMOCG00000019246) Fndc8 (ENSMOCG00000016181) Nle1 (ENSMOCG00000005383) Unc45b (ENSMOCG00000016526) Slfn5 (ENSMOCG00000010517) ##20 ENSMOCG00000018543 #19 Slfn2 (ENSMOCG00000021779) #18 Slfn1 (ENSMOCG00000005408) #18 Slfn14 (ENSMOCG00000008378) #20 Pex12 (ENSMOCG00000016233) #21 Ap2b1 (ENSMOCG00000014475) #22 Rasl10b (ENSMOCG00000001964) #23 Gas2l2 (ENSMOCG00000005581) 1700020L24Rik (ENSMOCG00000019897) #25 Mmp28 (ENSMOCG00000018460) #26 Taf15 (ENSMOCG00000015121) #27 Heatr9 (ENSMOCG00000009616) #28 Ccl5 (ENSMOCG00000020386) #29 ENSMOCG00000002418 ENSMOCG00000012772 ENSMOCG00000013583 #37 Ccl4 (ENSMOCG00000012149) ##37 ENSMOCG00000013687 ENSMOCG00000016372 Wfdc21 (ENSMOCG00000019007) Heatr6 (ENSMOCG00000015431) Cricetinae ANCESTRAL SPECIES ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00940000165476.d ENSGT00940000165476.c ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.e ENSGT00530000064879.f ENSGT00520000060616 Golden Hamster MODERN SPECIES 684 ENSMAUG00000013646 ##37 Tmem132e (ENSMAUG00000016009) Cct6b (ENSMAUG00000001673) Zfp830 (ENSMAUG00000012194) Lig3 (ENSMAUG00000020082) Rffl (ENSMAUG00000003967) Rad51d (ENSMAUG00000009497) Fndc8 (ENSMAUG00000016080) Nle1 (ENSMAUG00000016623) Unc45b (ENSMAUG00000011322) ENSMAUG00000009126 ##20 Slfn9 (ENSMAUG00000013430) #19 Slfn1 (ENSMAUG00000003013) #18 Slfn14 (ENSMAUG00000020439) #20 Pex12 (ENSMAUG00000004768) #21 Ap2b1 (ENSMAUG00000021295) #22 Rasl10b (ENSMAUG00000011536) #23 Gas2l2 (ENSMAUG00000001264) ENSMAUG00000018386 #27 Heatr9 (ENSMAUG00000019408) #28 Ccl5 (ENSMAUG00000000781) #29 ENSMAUG00000021412 ENSMAUG00000015635 Ccl3 (ENSMAUG00000021167) #37 Ccl4 (ENSMAUG00000020742) ##37 ENSMAUG00000009975 Wfdc21 (ENSMAUG00000018673) Heatr6 (ENSMAUG00000009627) Hnf1b (ENSMAUG00000009573) ENSMAUG00000007943 Ddx52 (ENSMAUG00000021084) Chinese hamster chok1gshd MODERN SPECIES 33 Cct6b (ENSCGRG00001020850) Zfp830 (ENSCGRG00001003631) Lig3 (ENSCGRG00001004370) Rffl (ENSCGRG00001019316) Rad51d (ENSCGRG00001012167) Fndc8 (ENSCGRG00001013060) Nle1 (ENSCGRG00001009877) Unc45b (ENSCGRG00001022400) Slfn5 (ENSCGRG00001016905) ##20 Slfn9 (ENSCGRG00001021962) #19 Slfn2 (ENSCGRG00001022663) #18 Slfn1 (ENSCGRG00001009249) #18 ENSCGRG00001019431 #18 Slfn14 (ENSCGRG00001017464) #20 Pex12 (ENSCGRG00001019900) #21 Ap2b1 (ENSCGRG00001020053) #22 Rasl10b (ENSCGRG00001010269) #23 Gas2l2 (ENSCGRG00001022937) 1700020L24Rik (ENSCGRG00001006404) #25 Mmp28 (ENSCGRG00001013370) #26 Taf15 (ENSCGRG00001012011) #27 Heatr9 (ENSCGRG00001019308) #28 Ccl5 (ENSCGRG00001017129) #29 ENSCGRG00001017750 Ccl6 (ENSCGRG00001008290) #32 Ccl3 (ENSCGRG00001019421) #37 Ccl4 (ENSCGRG00001020791) ##37 ENSCGRG00001018407 ENSCGRG00001019205 Wfdc21 (ENSCGRG00001020449) Heatr6 (ENSCGRG00001000753) Murinae ANCESTRAL SPECIES 6 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.g ENSGT00530000064879.h ENSGT00520000060616 ENSGT00390000016675 Mus ANCESTRAL SPECIES 2 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.g ENSGT00530000064879.h ENSGT00520000060616 ENSGT00390000016675 Mus_A ANCESTRAL SPECIES 2 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b.a #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.g.c ENSGT00530000064879.h ENSGT00520000060616 ENSGT00390000016675 Mus_B ANCESTRAL SPECIES 2 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b.b #18 ENSGT00410000025651.A.b.a.a.b.e.b.a #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.g.c ENSGT00530000064879.h ENSGT00520000060616 ENSGT00390000016675 Mouse MODERN SPECIES 2 Lig3 (ENSMUSG00000020697) Rffl (ENSMUSG00000020696) Rad51d (ENSMUSG00000018841) Fndc8 (ENSMUSG00000018844) Nle1 (ENSMUSG00000020692) Unc45b (ENSMUSG00000018845) Slfn5 (ENSMUSG00000054404) ##20 Slfn9 (ENSMUSG00000069793) #19 Slfn8 (ENSMUSG00000035208) #19 Slfn2 (ENSMUSG00000072620) #18 Slfn1 (ENSMUSG00000078763) #18 Slfn4 (ENSMUSG00000000204) #18 Slfn3 (ENSMUSG00000018986) #18 Slfn14 (ENSMUSG00000082101) #20 Pex12 (ENSMUSG00000018733) #21 Ap2b1 (ENSMUSG00000035152) #22 Rasl10b (ENSMUSG00000020684) #23 Gas2l2 (ENSMUSG00000020686) 1700020L24Rik (ENSMUSG00000035085) #25 Mmp28 (ENSMUSG00000020682) #26 Taf15 (ENSMUSG00000020680) #27 Heatr9 (ENSMUSG00000018925) #28 Ccl5 (ENSMUSG00000035042) #29 Ccl9 (ENSMUSG00000019122) #32 Ccl6 (ENSMUSG00000018927) #32 Ccl3 (ENSMUSG00000000982) #37 Ccl4 (ENSMUSG00000018930) ##37 Wfdc17 (ENSMUSG00000069792) Wfdc18 (ENSMUSG00000000983) Wfdc21 (ENSMUSG00000051748) Heatr6 (ENSMUSG00000000976) Mus_C ANCESTRAL SPECIES 3 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.e.a #18 ENSGT00410000025651.A.b.a.a.b.f #18 ENSGT00410000025651.A.b.a.a.b.e.b.a #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.m #32 ENSGT01100000263482.C.c.b.a.b.a.n #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.g.c ENSGT00530000064879.h ENSGT00520000060616 ENSGT00390000016675 Steppe mouse MODERN SPECIES 3305 ENSMSIG00000012844 #18 Slfn14 (ENSMSIG00000012821) #20 Pex12 (ENSMSIG00000012790) #21 Ap2b1 (ENSMSIG00000012708) #22 Rasl10b (ENSMSIG00000012687) #23 Gas2l2 (ENSMSIG00000012668) 1700020L24Rik (ENSMSIG00000012643) #25 Mmp28 (ENSMSIG00000012526) #26 Taf15 (ENSMSIG00000012461) #27 Heatr9 (ENSMSIG00000012418) #28 Ccl5 (ENSMSIG00000012408) #29 Ccl9 (ENSMSIG00000012396) #32 Ccl6 (ENSMSIG00000012387) #32 Ccl3 (ENSMSIG00000012367) #37 Ccl4 (ENSMSIG00000012352) ##37 ENSMSIG00000012344 ENSMSIG00000012332 ENSMSIG00000012323 Wfdc17 (ENSMSIG00000012316) spretus MODERN SPECIES 2 Lig3 (MGP_SPRETEiJ_G0017700) Rffl (MGP_SPRETEiJ_G0017701) Rad51d (MGP_SPRETEiJ_G0017702) Fndc8 (MGP_SPRETEiJ_G0017703) Nle1 (MGP_SPRETEiJ_G0017704) Unc45b (MGP_SPRETEiJ_G0017705) Slfn5 (MGP_SPRETEiJ_G0017706) ##20 MGP_SPRETEiJ_G0017707 #19 MGP_SPRETEiJ_G0017708 #19 Slfn2 (MGP_SPRETEiJ_G0017709) #18 Slfn1 (MGP_SPRETEiJ_G0017710) #18 MGP_SPRETEiJ_G0017711 #18 MGP_SPRETEiJ_G0017712 #18 Slfn14 (MGP_SPRETEiJ_G0017713) #20 Pex12 (MGP_SPRETEiJ_G0017714) #21 Ap2b1 (MGP_SPRETEiJ_G0017715) #22 Rasl10b (MGP_SPRETEiJ_G0017716) #23 Gas2l2 (MGP_SPRETEiJ_G0017717) 1700020L24Rik (MGP_SPRETEiJ_G0017718) #25 Mmp28 (MGP_SPRETEiJ_G0017719) #26 Taf15 (MGP_SPRETEiJ_G0017720) #27 Heatr9 (MGP_SPRETEiJ_G0017721) #28 Ccl5 (MGP_SPRETEiJ_G0017722) #29 Ccl9 (MGP_SPRETEiJ_G0017723) #32 Ccl6 (MGP_SPRETEiJ_G0017724) #32 MGP_SPRETEiJ_G0017725 Ccl3 (MGP_SPRETEiJ_G0017726) #37 Ccl4 (MGP_SPRETEiJ_G0017727) ##37 Wfdc17 (MGP_SPRETEiJ_G0017728) Wfdc18 (MGP_SPRETEiJ_G0017729) Wfdc21 (MGP_SPRETEiJ_G0017730) Ryukyu mouse MODERN SPECIES 2 Lig3 (MGP_CAROLIEiJ_G0016856) Rffl (MGP_CAROLIEiJ_G0016857) Rad51d (MGP_CAROLIEiJ_G0016858) Fndc8 (MGP_CAROLIEiJ_G0016859) Nle1 (MGP_CAROLIEiJ_G0016860) Unc45b (MGP_CAROLIEiJ_G0016861) MGP_CAROLIEiJ_G0016862 ##20 MGP_CAROLIEiJ_G0016863 #19 MGP_CAROLIEiJ_G0016864 #19 Slfn2 (MGP_CAROLIEiJ_G0016865) #18 Slfn1 (MGP_CAROLIEiJ_G0016866) #18 MGP_CAROLIEiJ_G0016867 #18 MGP_CAROLIEiJ_G0016868 #18 Slfn14 (MGP_CAROLIEiJ_G0016869) #20 Pex12 (MGP_CAROLIEiJ_G0016870) #21 Ap2b1 (MGP_CAROLIEiJ_G0016871) #22 Rasl10b (MGP_CAROLIEiJ_G0016872) #23 Gas2l2 (MGP_CAROLIEiJ_G0016873) 1700020L24Rik (MGP_CAROLIEiJ_G0016874) #25 Mmp28 (MGP_CAROLIEiJ_G0016875) #26 Taf15 (MGP_CAROLIEiJ_G0016876) #27 Heatr9 (MGP_CAROLIEiJ_G0016877) #28 Ccl5 (MGP_CAROLIEiJ_G0016878) #29 Ccl9 (MGP_CAROLIEiJ_G0016879) #32 Ccl6 (MGP_CAROLIEiJ_G0016880) #32 Ccl3 (MGP_CAROLIEiJ_G0016881) #37 Ccl4 (MGP_CAROLIEiJ_G0016882) ##37 Wfdc17 (MGP_CAROLIEiJ_G0016883) Wfdc18 (MGP_CAROLIEiJ_G0016884) Wfdc21 (MGP_CAROLIEiJ_G0016885) Heatr6 (MGP_CAROLIEiJ_G0016886) Shrew mouse MODERN SPECIES 5 MGP_PahariEiJ_G0017987 ##37 MGP_PahariEiJ_G0017988 ##37 Ccl1 (MGP_PahariEiJ_G0017989) Tmem132e (MGP_PahariEiJ_G0017990) Cct6b (MGP_PahariEiJ_G0017991) Zfp830 (MGP_PahariEiJ_G0017992) Lig3 (MGP_PahariEiJ_G0017993) Rffl (MGP_PahariEiJ_G0017994) Rad51d (MGP_PahariEiJ_G0017995) Fndc8 (MGP_PahariEiJ_G0017996) Nle1 (MGP_PahariEiJ_G0017997) Unc45b (MGP_PahariEiJ_G0017998) Slfn5 (MGP_PahariEiJ_G0017999) ##20 Slfn14 (MGP_PahariEiJ_G0018000) #20 Pex12 (MGP_PahariEiJ_G0018001) #21 Ap2b1 (MGP_PahariEiJ_G0018002) #22 Rasl10b (MGP_PahariEiJ_G0018003) #23 Gas2l2 (MGP_PahariEiJ_G0018004) 1700020L24Rik (MGP_PahariEiJ_G0018005) #25 Mmp28 (MGP_PahariEiJ_G0018006) #26 Taf15 (MGP_PahariEiJ_G0018007) #27 Heatr9 (MGP_PahariEiJ_G0018008) #28 Ccl5 (MGP_PahariEiJ_G0018009) #29 Ccl9 (MGP_PahariEiJ_G0018010) #32 Ccl6 (MGP_PahariEiJ_G0018011) #32 Ccl3 (MGP_PahariEiJ_G0018012) #37 Ccl4 (MGP_PahariEiJ_G0018013) ##37 Wfdc21 (MGP_PahariEiJ_G0018015) Heatr6 (MGP_PahariEiJ_G0018016) Hnf1b (MGP_PahariEiJ_G0018017) Ddx52 (MGP_PahariEiJ_G0018018) Rat DUPLICATION Rat DUPLICATION Rat MODERN SPECIES 8 ENSRNOG00000065594 Nrsn1 (ENSRNOG00000017444) Dcdc2 (ENSRNOG00000017511) Mrs2 (ENSRNOG00000017545) Gpld1 (ENSRNOG00000017702) Aldh5a1 (ENSRNOG00000023538) RGD1307443 (ENSRNOG00000018141) Rpl37-ps1 (ENSRNOG00000063362) Tdp2 (ENSRNOG00000018246) Acot13 (ENSRNOG00000018415) C17h6orf62-ps1 (ENSRNOG00000018456) Gmnn (ENSRNOG00000018782) Armh2 (ENSRNOG00000064812) Ripor2 (ENSRNOG00000018804) Cmahp (ENSRNOG00000003094) ENSRNOG00000067245 #22 ENSRNOG00000064118 #22 Carmil1 (ENSRNOG00000016576) Scgn (ENSRNOG00000016628) H2ac1 (ENSRNOG00000065352) H2bc1 (ENSRNOG00000069905) Slc17a4 (ENSRNOG00000022505) AABR07027750.1 (ENSRNOG00000042692) Slc17a3 (ENSRNOG00000032745) Slc17a2 (ENSRNOG00000017180) H1f1 (ENSRNOG00000017175) Hist1h3b (ENSRNOG00000068614) Hist1h4m (ENSRNOG00000065263) LOC102549173 (ENSRNOG00000066835) H3c13 (ENSRNOG00000065054) Hist1h2af (ENSRNOG00000022146) Rat MODERN SPECIES 8 Nrsn1 (ENSRNOG00000017444) Dcdc2 (ENSRNOG00000017511) Mrs2 (ENSRNOG00000017545) Gpld1 (ENSRNOG00000017702) Aldh5a1 (ENSRNOG00000023538) RGD1307443 (ENSRNOG00000018141) Rpl37-ps1 (ENSRNOG00000063362) Tdp2 (ENSRNOG00000018246) Acot13 (ENSRNOG00000018415) C17h6orf62-ps1 (ENSRNOG00000018456) Gmnn (ENSRNOG00000018782) Armh2 (ENSRNOG00000064812) Ripor2 (ENSRNOG00000018804) Cmahp (ENSRNOG00000003094) ENSRNOG00000067245 #22 ENSRNOG00000064118 #22 Carmil1 (ENSRNOG00000016576) Scgn (ENSRNOG00000016628) H2ac1 (ENSRNOG00000065352) H2bc1 (ENSRNOG00000069905) Slc17a4 (ENSRNOG00000022505) AABR07027750.1 (ENSRNOG00000042692) Slc17a3 (ENSRNOG00000032745) Slc17a2 (ENSRNOG00000017180) H1f1 (ENSRNOG00000017175) Hist1h3b (ENSRNOG00000068614) Hist1h4m (ENSRNOG00000065263) LOC102549173 (ENSRNOG00000066835) H3c13 (ENSRNOG00000065054) Hist1h2af (ENSRNOG00000022146) H1f2 (ENSRNOG00000067441) Rat DUPLICATION Rat MODERN SPECIES 1 Unc45b (ENSRNOG00000009466) ENSRNOG00000062443 Slfn5 (ENSRNOG00000021719) ##20 Slfn13 (ENSRNOG00000021412) #19 ENSRNOG00000063847 LOC108352183 (ENSRNOG00000037114) Slfn2 (ENSRNOG00000037113) #18 Slfn1 (ENSRNOG00000048053) #18 Slfn4 (ENSRNOG00000057092) Slfn4 (ENSRNOG00000063541) #18 LOC688925 (ENSRNOG00000032135) AC118772.2 (ENSRNOG00000021357) #18 ENSRNOG00000062983 #18 AC118772.1 (ENSRNOG00000009709) #20 Pex12 (ENSRNOG00000009718) #21 Ap2b1 (ENSRNOG00000061543) #22 Rasl10b (ENSRNOG00000010302) #23 Gas2l2 (ENSRNOG00000047546) LOC689039 (ENSRNOG00000049757) #25 Mmp28 (ENSRNOG00000047940) #26 Taf15 (ENSRNOG00000058393) #27 Heatr9 (ENSRNOG00000037100) #28 Ccl5 (ENSRNOG00000010906) Ccl9 (ENSRNOG00000028548) #32 Ccl6 (ENSRNOG00000030021) Ccl3 (ENSRNOG00000011205) #37 Ccl4 (ENSRNOG00000011406) ##37 ENSRNOG00000070672 LOC103695128 (ENSRNOG00000051084) LOC100909660 (ENSRNOG00000066869) ENSRNOG00000066744 Rat MODERN SPECIES ENSRNOG00000066169 ENSRNOG00000068667 Zfp273l-ps1 (ENSRNOG00000046353) LOC102551340 (ENSRNOG00000047145) Spry3-ps1 (ENSRNOG00000064505) Zfp748 (ENSRNOG00000069921) LOC102549842 (ENSRNOG00000049259) LOC102547287 (ENSRNOG00000016462) RGD1566325 (ENSRNOG00000017963) ENSRNOG00000068953 Zfp455l1 (ENSRNOG00000042308) Mtrr (ENSRNOG00000017826) Fastkd3 (ENSRNOG00000027422) Cfap90 (ENSRNOG00000047406) Adcy2 (ENSRNOG00000032150) Ap2b1-ps1 (ENSRNOG00000017678) #22 Tent4a (ENSRNOG00000017613) Srd5a1 (ENSRNOG00000017601) Nsun2 (ENSRNOG00000017254) Ube2ql1 (ENSRNOG00000034075) Med10 (ENSRNOG00000017150) Dlat-ps1 (ENSRNOG00000017095) Ice1 (ENSRNOG00000023053) Adamts16 (ENSRNOG00000016812) Irx1 (ENSRNOG00000033609) Irx2 (ENSRNOG00000012742) Irx4 (ENSRNOG00000012720) Ndufs6l1 (ENSRNOG00000062531) Mrpl36 (ENSRNOG00000023407) Lpcat1 (ENSRNOG00000017930) Slc6a3 (ENSRNOG00000017302) Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1422 Tmem132e (ENSNGAG00000014402) ENSNGAG00000017447 Cct6b (ENSNGAG00000011636) Zfp830 (ENSNGAG00000014849) Lig3 (ENSNGAG00000019767) Rffl (ENSNGAG00000017708) Rad51d (ENSNGAG00000008118) Fndc8 (ENSNGAG00000019921) Nle1 (ENSNGAG00000012348) Unc45b (ENSNGAG00000000238) Slfn5 (ENSNGAG00000014194) ##20 ENSNGAG00000020404 #19 Slfn14 (ENSNGAG00000011735) #20 ENSNGAG00000016398 ENSNGAG00000013242 ENSNGAG00000009444 #22 Rasl10b (ENSNGAG00000002106) #23 ENSNGAG00000019453 #24 1700020L24Rik (ENSNGAG00000019913) #25 Mmp28 (ENSNGAG00000014473) #26 ENSNGAG00000015117 Taf15 (ENSNGAG00000017633) #27 Heatr9 (ENSNGAG00000011711) #28 Ccl5 (ENSNGAG00000003622) #29 ENSNGAG00000006220 Ccl3 (ENSNGAG00000003991) #37 Ccl4 (ENSNGAG00000003228) ##37 ENSNGAG00000017535 Wfdc21 (ENSNGAG00000012983) Heatr6 (ENSNGAG00000016534) Hnf1b (ENSNGAG00000017601) Upper Galilee mountains blind mole rat MODERN SPECIES 1303 Rhou (ENSNGAG00000010199) ENSNGAG00000013788 Rab4a (ENSNGAG00000020318) Ccsap (ENSNGAG00000020516) Acta1 (ENSNGAG00000008844) Nup133 (ENSNGAG00000011857) ENSNGAG00000016124 #22 Abcb10 (ENSNGAG00000005450) Taf5l (ENSNGAG00000013058) Urb2 (ENSNGAG00000016524) ENSNGAG00000000097 Galnt2 (ENSNGAG00000017214) Pgbd5 (ENSNGAG00000016041) ENSNGAG00000013046 Agt (ENSNGAG00000014491) Capn9 (ENSNGAG00000017031) 2310022B05Rik (ENSNGAG00000012261) Ttc13 (ENSNGAG00000013995) Arv1 (ENSNGAG00000007653) Fam89a (ENSNGAG00000015567) Trim67 (ENSNGAG00000000094) 2810004N23Rik (ENSNGAG00000001222) Lesser Egyptian jerboa MODERN SPECIES 112 Tmem132e (ENSJJAG00000018290) Cct6b (ENSJJAG00000014826) Zfp830 (ENSJJAG00000010210) Lig3 (ENSJJAG00000003848) Rffl (ENSJJAG00000020929) Rad51d (ENSJJAG00000014931) Fndc8 (ENSJJAG00000018336) Nle1 (ENSJJAG00000008356) Unc45b (ENSJJAG00000018066) ENSJJAG00000016743 ENSJJAG00000020087 #19 ENSJJAG00000024250 #18 ENSJJAG00000018288 Slfn14 (ENSJJAG00000016028) #20 ENSJJAG00000008010 Ap2b1 (ENSJJAG00000023688) #22 Rasl10b (ENSJJAG00000011469) #23 ENSJJAG00000020015 #24 1700020L24Rik (ENSJJAG00000011369) #25 Mmp28 (ENSJJAG00000009319) #26 Taf15 (ENSJJAG00000010606) #27 Heatr9 (ENSJJAG00000012557) #28 Ccl5 (ENSJJAG00000024069) #29 Ccl3 (ENSJJAG00000022032) #37 Ccl4 (ENSJJAG00000011404) ##37 ENSJJAG00000023138 Wfdc21 (ENSJJAG00000014661) Heatr6 (ENSJJAG00000012154) Hnf1b (ENSJJAG00000011207) Ddx52 (ENSJJAG00000021877) Synrg (ENSJJAG00000021827) Kangaroo rat MODERN SPECIES 338 Cct6b (ENSDORG00000001249) Lig3 (ENSDORG00000013422) Rffl (ENSDORG00000013424) Rad51d (ENSDORG00000024542) Fndc8 (ENSDORG00000000843) Nle1 (ENSDORG00000000845) Unc45b (ENSDORG00000000847) ENSDORG00000023333 #19 Pex12 (ENSDORG00000026935) #21 Ap2b1 (ENSDORG00000003803) #22 Rasl10b (ENSDORG00000003805) #23 ENSDORG00000026155 #24 1700020L24Rik (ENSDORG00000003808) #25 Mmp28 (ENSDORG00000003809) #26 Taf15 (ENSDORG00000014619) #27 ENSDORG00000003141 #28 Ccl5 (ENSDORG00000007688) #29 Ccl4 (ENSDORG00000026295) ##37 Wfdc21 (ENSDORG00000024216) Heatr6 (ENSDORG00000011214) Hnf1b (ENSDORG00000009669) Ddx52 (ENSDORG00000004276) Synrg (ENSDORG00000004275) Dusp14 (ENSDORG00000025341) Tada2a (ENSDORG00000009547) Lagomorpha ANCESTRAL SPECIES ENSGT01100000263482.A.a.a.c.a ##37 ENSGT01100000263482.F ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476.b ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT00940000165089 ENSGT00520000060616 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Rabbit MODERN SPECIES 10 ENSOCUG00000030195 ENSOCUG00000013412 ##37 ENSOCUG00000013416 TMEM132E (ENSOCUG00000012159) CCT6B (ENSOCUG00000012343) ZNF830 (ENSOCUG00000012351) LIG3 (ENSOCUG00000006305) RFFL (ENSOCUG00000006315) ENSOCUG00000014300 FNDC8 (ENSOCUG00000014306) NLE1 (ENSOCUG00000014310) UNC45B (ENSOCUG00000026443) SLFN13 (ENSOCUG00000003504) #19 SLFN14 (ENSOCUG00000006884) #20 PEX12 (ENSOCUG00000004058) #21 AP2B1 (ENSOCUG00000004060) #22 RASL10B (ENSOCUG00000004080) #23 GAS2L2 (ENSOCUG00000004081) C17orf50 (ENSOCUG00000004084) #25 MMP28 (ENSOCUG00000004089) #26 TAF15 (ENSOCUG00000002838) #27 HEATR9 (ENSOCUG00000002842) #28 ENSOCUG00000002848 #29 CCL14 (ENSOCUG00000002849) #31 ENSOCUG00000000686 ENSOCUG00000000771 #37 ENSOCUG00000026206 ENSOCUG00000036945 HEATR6 (ENSOCUG00000003690) HNF1B (ENSOCUG00000003682) DDX52 (ENSOCUG00000014532) Pika MODERN SPECIES 3093 ENSOPRG00000011707 LIG3 (ENSOPRG00000011746) RFFL (ENSOPRG00000011769) RAD51D (ENSOPRG00000011777) FNDC8 (ENSOPRG00000011794) NLE1 (ENSOPRG00000011799) UNC45B (ENSOPRG00000011826) ENSOPRG00000011856 #19 PEX12 (ENSOPRG00000011876) #21 AP2B1 (ENSOPRG00000011887) #22 RASL10B (ENSOPRG00000011920) #23 ENSOPRG00000011930 #24 C17orf50 (ENSOPRG00000011951) #25 MMP28 (ENSOPRG00000011967) #26 HEATR9 (ENSOPRG00000011985) #28 ENSOPRG00000012010 #29 ENSOPRG00000012019 #30 CCL14 (ENSOPRG00000018376) #31 ENSOPRG00000012033 ENSOPRG00000012047 ENSOPRG00000012051 Tree shrew MODERN SPECIES 2667 AP2B1 (ENSTBEG00000005943) #22 ENSTBEG00000007338 #23 GAS2L2 (ENSTBEG00000007765) C17orf50 (ENSTBEG00000008260) #25 MMP28 (ENSTBEG00000008806) #26 TAF15 (ENSTBEG00000009064) #27 ENSTBEG00000001717 #28 ENSTBEG00000002353 #29 ENSTBEG00000002787 #32 Primates ANCESTRAL SPECIES 3 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000166945 Haplorrhini ANCESTRAL SPECIES 6 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00520000060616 ENSGT00390000016675 Simiiformes ANCESTRAL SPECIES 7 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a #37 Catarrhini DUPLICATION Catarrhini ANCESTRAL SPECIES 8 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a.b #37 Hominoidea ANCESTRAL SPECIES 27 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a.a.a #37 Hominidae ANCESTRAL SPECIES 20 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00390000006867.e.a ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a.a.a #37 Homo/Pan/Gorilla group ANCESTRAL SPECIES 1 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00940000155067.a.b ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00390000006867.e.a ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209.c #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a.a.a #37 Homo/Pan group ANCESTRAL SPECIES 2 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00940000155067.a.b ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00390000006867.e.a ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209.c #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a.a.a #37 Pan ANCESTRAL SPECIES 3 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00940000155067.a.b ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00390000010391.w.b ENSGT00390000006867.e.a ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00940000153342.b.x ENSGT00410000025651.A.b.b #20 ENSGT00390000016209.c #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a.a.a #37 Chimpanzee MODERN SPECIES 8 UNC45B (ENSPTRG00000009013) ENSPTRG00000047307 SLFN5 (ENSPTRG00000009016) ##20 SLFN11 (ENSPTRG00000009017) #19 ENSPTRG00000047496 ENSPTRG00000047996 SLFN12 (ENSPTRG00000009018) #18 SLFN13 (ENSPTRG00000042109) #19 ENSPTRG00000044720 ENSPTRG00000052504 ENSPTRG00000048253 SLFN12L (ENSPTRG00000030902) #18 SLFN14 (ENSPTRG00000039969) #20 PEX12 (ENSPTRG00000009020) #21 ENSPTRG00000052160 AP2B1 (ENSPTRG00000009021) #22 RASL10B (ENSPTRG00000009022) #23 GAS2L2 (ENSPTRG00000009023) C17H17orf50 (ENSPTRG00000009024) #25 MMP28 (ENSPTRG00000009025) #26 TAF15 (ENSPTRG00000009026) #27 HEATR9 (ENSPTRG00000009028) #28 CCL5 (ENSPTRG00000046869) #29 RDM1 (ENSPTRG00000009031) LYZL6 (ENSPTRG00000009032) CCL16 (ENSPTRG00000009033) #30 CCL14 (ENSPTRG00000033677) #31 CCL15 (ENSPTRG00000009034) #32 CCL23 (ENSPTRG00000009036) #32 CCL18 (ENSPTRG00000009037) #37 CCL3 (ENSPTRG00000009039) #37 Bonobo MODERN SPECIES 8 UNC45B (ENSPPAG00000030112) ENSPPAG00000025361 SLFN5 (ENSPPAG00000037908) ##20 SLFN11 (ENSPPAG00000039146) #19 ENSPPAG00000038962 ENSPPAG00000024460 SLFN12 (ENSPPAG00000008992) #18 SLFN13 (ENSPPAG00000039054) #19 ENSPPAG00000038367 SLFN12L (ENSPPAG00000026392) #18 ENSPPAG00000035752 ENSPPAG00000028828 SLFN14 (ENSPPAG00000043166) #20 PEX12 (ENSPPAG00000036383) #21 ENSPPAG00000029903 AP2B1 (ENSPPAG00000031208) #22 ENSPPAG00000040461 RASL10B (ENSPPAG00000028215) #23 GAS2L2 (ENSPPAG00000038597) C17orf50 (ENSPPAG00000033236) #25 MMP28 (ENSPPAG00000029288) #26 ENSPPAG00000043510 #27 HEATR9 (ENSPPAG00000031757) #28 ENSPPAG00000043880 #29 RDM1 (ENSPPAG00000029969) LYZL6 (ENSPPAG00000032212) CCL16 (ENSPPAG00000035490) #30 CCL14 (ENSPPAG00000033863) #31 CCL15 (ENSPPAG00000034926) #32 CCL23 (ENSPPAG00000032672) #32 CCL18 (ENSPPAG00000038398) #37 Human MODERN SPECIES 8 LIG3 (ENSG00000005156) RFFL (ENSG00000092871) ENSG00000267618 RAD51D (ENSG00000185379) FNDC8 (ENSG00000073598) NLE1 (ENSG00000073536) UNC45B (ENSG00000141161) SLC35G3 (ENSG00000164729) SLFN5 (ENSG00000166750) ##20 SLFN11 (ENSG00000172716) #19 SLFN12 (ENSG00000172123) #18 SLFN13 (ENSG00000154760) #19 SLFN12L (ENSG00000205045) #18 SLFN14 (ENSG00000236320) #20 PEX12 (ENSG00000108733) #21 AP2B1 (ENSG00000006125) #22 RASL10B (ENSG00000270885) #23 GAS2L2 (ENSG00000270765) MMP28 (ENSG00000271447) #26 C17orf50 (ENSG00000270806) #25 TAF15 (ENSG00000270647) #27 HEATR9 (ENSG00000270379) #28 CCL5 (ENSG00000271503) RDM1 (ENSG00000278023) LYZL6 (ENSG00000275722) CCL16 (ENSG00000275152) #30 CCL14 (ENSG00000276409) #31 CCL15 (ENSG00000275718) #32 CCL23 (ENSG00000274736) #32 CCL18 (ENSG00000275385) #37 CCL3 (ENSG00000277632) #37 Gorilla MODERN SPECIES 18 UNC45B (ENSGGOG00000010763) ENSGGOG00000040207 ENSGGOG00000009494 SLFN5 (ENSGGOG00000011259) ##20 SLFN11 (ENSGGOG00000034948) #19 ENSGGOG00000041052 ENSGGOG00000038915 SLFN12 (ENSGGOG00000001620) #18 SLFN13 (ENSGGOG00000014291) #19 ENSGGOG00000042321 ENSGGOG00000041375 SLFN12L (ENSGGOG00000002881) #18 ENSGGOG00000027717 #20 ENSGGOG00000026951 #20 PEX12 (ENSGGOG00000003330) #21 AP2B1 (ENSGGOG00000015593) #22 RASL10B (ENSGGOG00000015607) #23 GAS2L2 (ENSGGOG00000015608) C17orf50 (ENSGGOG00000015614) #25 MMP28 (ENSGGOG00000015617) #26 TAF15 (ENSGGOG00000005693) #27 HEATR9 (ENSGGOG00000007596) #28 ENSGGOG00000007604 RDM1 (ENSGGOG00000010584) LYZL6 (ENSGGOG00000010460) CCL16 (ENSGGOG00000038395) #30 CCL14 (ENSGGOG00000002497) #31 CCL15 (ENSGGOG00000002498) #32 CCL23 (ENSGGOG00000003575) #32 CCL18 (ENSGGOG00000011865) #37 CCL3 (ENSGGOG00000026449) #37 Orangutan MODERN SPECIES 8 LIG3 (ENSPPYG00000008176) RFFL (ENSPPYG00000008177) RAD51D (ENSPPYG00000008178) FNDC8 (ENSPPYG00000008179) NLE1 (ENSPPYG00000008180) UNC45B (ENSPPYG00000008181) SLFN5 (ENSPPYG00000008182) ##20 SLFN11 (ENSPPYG00000038116) #19 ENSPPYG00000039214 SLFN12 (ENSPPYG00000008184) #18 SLFN13 (ENSPPYG00000029995) #19 SLFN12L (ENSPPYG00000008186) #18 SLFN14 (ENSPPYG00000035943) #20 ENSPPYG00000030213 PEX12 (ENSPPYG00000008187) #21 AP2B1 (ENSPPYG00000008188) #22 RASL10B (ENSPPYG00000037237) #23 GAS2L2 (ENSPPYG00000008191) ENSPPYG00000008192 #25 MMP28 (ENSPPYG00000008193) #26 TAF15 (ENSPPYG00000008194) #27 HEATR9 (ENSPPYG00000008195) #28 ENSPPYG00000031268 #29 RDM1 (ENSPPYG00000008198) LYZL6 (ENSPPYG00000008199) CCL16 (ENSPPYG00000008200) #30 ENSPPYG00000040512 #31 CCL15 (ENSPPYG00000041781) #32 CCL23 (ENSPPYG00000008202) #32 CCL18 (ENSPPYG00000008203) #37 CCL3 (ENSPPYG00000038679) #37 Gibbon DUPLICATION Gibbon MODERN SPECIES 111 SLFN5 (ENSNLEG00000013893) ##20 SLFN11 (ENSNLEG00000013909) #19 SLFN13 (ENSNLEG00000032280) #19 SLFN14 (ENSNLEG00000013925) #20 PEX12 (ENSNLEG00000013933) #21 ENSNLEG00000013939 #22 C17orf50 (ENSNLEG00000014035) #25 MMP28 (ENSNLEG00000014038) #26 TAF15 (ENSNLEG00000014063) #27 HEATR9 (ENSNLEG00000014122) #28 ENSNLEG00000014169 #29 RDM1 (ENSNLEG00000014173) LYZL6 (ENSNLEG00000014207) ENSNLEG00000014211 #30 ENSNLEG00000014214 #31 CCL15 (ENSNLEG00000014223) #32 CCL23 (ENSNLEG00000014228) #32 CCL18 (ENSNLEG00000014237) #37 ENSNLEG00000035999 #37 ENSNLEG00000014239 #37 ENSNLEG00000014251 ##37 Gibbon MODERN SPECIES 24 ADGRL3 (ENSNLEG00000008957) ENSNLEG00000033354 TECRL (ENSNLEG00000008982) ENSNLEG00000030813 EPHA5 (ENSNLEG00000008987) CENPC (ENSNLEG00000009058) STAP1 (ENSNLEG00000009082) UBA6 (ENSNLEG00000009086) GNRHR (ENSNLEG00000009158) TMPRSS11D (ENSNLEG00000009163) TMPRSS11A (ENSNLEG00000009182) TMPRSS11F (ENSNLEG00000009193) YTHDC1 (ENSNLEG00000009202) TMPRSS11E (ENSNLEG00000009223) UGT2B15 (ENSNLEG00000009240) ENSNLEG00000009256 #22 LRP8 (ENSNLEG00000017986) MAGOH (ENSNLEG00000017987) CZIB (ENSNLEG00000017988) ENSNLEG00000028350 CPT2 (ENSNLEG00000017989) SLC1A7 (ENSNLEG00000017990) PODN (ENSNLEG00000017991) SCP2 (ENSNLEG00000017992) ECHDC2 (ENSNLEG00000036128) ENSNLEG00000033930 ZYG11B (ENSNLEG00000017994) COA7 (ENSNLEG00000036297) SHISAL2A (ENSNLEG00000017996) GPX7 (ENSNLEG00000017997) ENSNLEG00000035494 Cercopithecidae ANCESTRAL SPECIES 6 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01050000245362 #34 Cercopithecinae ANCESTRAL SPECIES 4 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT01100000263482.C.c.b.b.a.b.a.a.d #37 Cercopithecinae_a ANCESTRAL SPECIES 4 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458.b ENSGT00390000006458.a.a ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00940000153342.b.x ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00390000010799.u.b.a.a.b.p.b ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 Cercopithecinae_b ANCESTRAL SPECIES 33 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458.b ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a.cb #19 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a.bb.b #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00940000153342.b.x ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00390000010799.u.b.a.a.b.p.b ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 Cercopithecinae_d ANCESTRAL SPECIES 98 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458.b ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a.bb.b #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00940000153342.b.x ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00390000010799.u.b.a.a.b.p.b ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 Sooty mangabey MODERN SPECIES 145 LIG3 (ENSCATG00000044619) RFFL (ENSCATG00000037355) RAD51D (ENSCATG00000034042) ENSCATG00000031430 ENSCATG00000034997 NLE1 (ENSCATG00000038372) UNC45B (ENSCATG00000038004) SLFN5 (ENSCATG00000042531) ##20 SLFN12 (ENSCATG00000037618) #18 SLFN13 (ENSCATG00000013030) #19 ENSCATG00000002686 SLFN12L (ENSCATG00000041013) #18 SLFN14 (ENSCATG00000021975) #20 PEX12 (ENSCATG00000040975) #21 ENSCATG00000044039 AP2B1 (ENSCATG00000031381) #22 RASL10B (ENSCATG00000037782) #23 GAS2L2 (ENSCATG00000032299) C17orf50 (ENSCATG00000039669) #25 MMP28 (ENSCATG00000045014) #26 TAF15 (ENSCATG00000044848) #27 HEATR9 (ENSCATG00000037222) #28 ENSCATG00000042685 #29 RDM1 (ENSCATG00000044451) LYZL6 (ENSCATG00000043618) CCL16 (ENSCATG00000014237) #30 CCL14 (ENSCATG00000032451) #31 CCL15 (ENSCATG00000029737) #32 CCL23 (ENSCATG00000040222) #32 CCL18 (ENSCATG00000031865) #37 CCL3L3 (ENSCATG00000026347) #37 Drill MODERN SPECIES 1298 SLFN12 (ENSMLEG00000031521) #18 ENSMLEG00000040760 #19 ENSMLEG00000034690 SLFN12L (ENSMLEG00000025692) #18 SLFN14 (ENSMLEG00000028994) #20 PEX12 (ENSMLEG00000028726) #21 ENSMLEG00000043929 AP2B1 (ENSMLEG00000042195) #22 RASL10B (ENSMLEG00000039957) #23 GAS2L2 (ENSMLEG00000028993) MMP28 (ENSMLEG00000035285) #26 TAF15 (ENSMLEG00000028534) #27 HEATR9 (ENSMLEG00000034282) #28 ENSMLEG00000033238 #29 RDM1 (ENSMLEG00000041158) LYZL6 (ENSMLEG00000034002) CCL16 (ENSMLEG00000036599) #30 CCL14 (ENSMLEG00000027250) #31 CCL15 (ENSMLEG00000029997) #32 CCL23 (ENSMLEG00000036290) #32 CCL18 (ENSMLEG00000036282) #37 ENSMLEG00000043882 #37 ENSMLEG00000033437 Olive baboon MODERN SPECIES 8 ZNF830 (ENSPANG00000023017) LIG3 (ENSPANG00000022999) RFFL (ENSPANG00000023003) RAD51D (ENSPANG00000022997) FNDC8 (ENSPANG00000022990) NLE1 (ENSPANG00000022991) UNC45B (ENSPANG00000022993) SLFN5 (ENSPANG00000022994) ##20 SLFN11 (ENSPANG00000022995) #19 SLFN12 (ENSPANG00000022996) #18 SLFN13 (ENSPANG00000048259) #19 SLFN12L (ENSPANG00000030174) #18 ENSPANG00000032536 SLFN14 (ENSPANG00000022979) #20 PEX12 (ENSPANG00000022980) #21 AP2B1 (ENSPANG00000022982) #22 RASL10B (ENSPANG00000046564) #23 GAS2L2 (ENSPANG00000022978) C17orf50 (ENSPANG00000022929) #25 MMP28 (ENSPANG00000022977) #26 TAF15 (ENSPANG00000022930) #27 HEATR9 (ENSPANG00000022932) #28 ENSPANG00000030339 #29 RDM1 (ENSPANG00000022933) LYZL6 (ENSPANG00000022934) CCL16 (ENSPANG00000022935) #30 CCL14 (ENSPANG00000022936) #31 CCL15 (ENSPANG00000022937) #32 ENSPANG00000022938 CCL18 (ENSPANG00000041083) #37 HEATR6 (ENSPANG00000009798) Macaca ANCESTRAL SPECIES 4 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458.a.a ENSGT00390000006458.a.b ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00940000153342.b.x ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00390000010799.u.b.a.a.b.p.b ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT01100000263482.C.c.b.a.b.a.h #32 ENSGT01100000263482.C.c.b.b.a.b.b #37 Macaca_a ANCESTRAL SPECIES 4 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00390000006458.a.b ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.a.a.b.a.a.b.b.b.a.b.a.a.a.b ENSGT00410000025651.A.b.b #20 ENSGT00940000163244.d.b.b.b.a.a ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.b.a.b.a ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a.g #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.b.a.b.b #37 Crab-eating macaque MODERN SPECIES 7 ZNF830 (ENSMFAG00000025776) LIG3 (ENSMFAG00000036202) ENSMFAG00000036080 FNDC8 (ENSMFAG00000000308) NLE1 (ENSMFAG00000037776) UNC45B (ENSMFAG00000036065) SLFN5 (ENSMFAG00000034231) ##20 SLFN13 (ENSMFAG00000000114) #19 SLFN12 (ENSMFAG00000001223) #18 SLFN12L (ENSMFAG00000050765) #18 ENSMFAG00000064945 ENSMFAG00000059172 SLFN14 (ENSMFAG00000037905) #20 ENSMFAG00000059317 PEX12 (ENSMFAG00000039486) #21 AP2B1 (ENSMFAG00000032866) #22 RASL10B (ENSMFAG00000059499) #23 GAS2L2 (ENSMFAG00000046155) C17orf50 (ENSMFAG00000055962) #25 MMP28 (ENSMFAG00000003523) #26 TAF15 (ENSMFAG00000041941) #27 HEATR9 (ENSMFAG00000001762) #28 ENSMFAG00000031627 #29 RDM1 (ENSMFAG00000032968) ENSMFAG00000054146 LYZL6 (ENSMFAG00000044524) CCL16 (ENSMFAG00000002269) #30 CCL14 (ENSMFAG00000000804) #31 CCL15 (ENSMFAG00000033315) #32 ENSMFAG00000003696 CCL18 (ENSMFAG00000036319) #37 Rhesus MODERN SPECIES 7 ZNF830 (ENSMMUG00000006402) LIG3 (ENSMMUG00000004794) RFFL (ENSMMUG00000000750) FNDC8 (ENSMMUG00000000744) NLE1 (ENSMMUG00000000751) UNC45B (ENSMMUG00000005170) SLFN5 (ENSMMUG00000010082) ##20 SLFN13 (ENSMMUG00000037555) #19 SLFN12 (ENSMMUG00000005550) #18 SLFN12L (ENSMMUG00000060439) #18 ENSMMUG00000055108 ENSMMUG00000062650 SLFN14 (ENSMMUG00000048316) #20 ENSMMUG00000031736 PEX12 (ENSMMUG00000006047) #21 AP2B1 (ENSMMUG00000006048) #22 RASL10B (ENSMMUG00000013143) #23 GAS2L2 (ENSMMUG00000013142) C16H17orf50 (ENSMMUG00000022228) #25 MMP28 (ENSMMUG00000022229) #26 TAF15 (ENSMMUG00000047780) #27 HEATR9 (ENSMMUG00000022233) #28 CCL5 (ENSMMUG00000054796) #29 RDM1 (ENSMMUG00000006847) ENSMMUG00000054146 LYZL6 (ENSMMUG00000006850) CCL16 (ENSMMUG00000045883) #30 CCL14 (ENSMMUG00000002466) #31 CCL15 (ENSMMUG00000039864) #32 CCL23 (ENSMMUG00000002467) CCL18 (ENSMMUG00000047114) #37 Pig-tailed macaque MODERN SPECIES 116 LIG3 (ENSMNEG00000039607) RFFL (ENSMNEG00000031746) RAD51D (ENSMNEG00000028511) FNDC8 (ENSMNEG00000041134) NLE1 (ENSMNEG00000032551) UNC45B (ENSMNEG00000036484) SLFN5 (ENSMNEG00000032653) ##20 SLFN12 (ENSMNEG00000044024) #18 SLFN13 (ENSMNEG00000033683) #19 ENSMNEG00000029409 ENSMNEG00000045423 SLFN12L (ENSMNEG00000040209) #18 SLFN14 (ENSMNEG00000007518) #20 PEX12 (ENSMNEG00000034562) #21 ENSMNEG00000029590 AP2B1 (ENSMNEG00000042752) #22 RASL10B (ENSMNEG00000039335) #23 GAS2L2 (ENSMNEG00000039828) C17orf50 (ENSMNEG00000036265) #25 MMP28 (ENSMNEG00000035643) #26 TAF15 (ENSMNEG00000044227) #27 HEATR9 (ENSMNEG00000029332) #28 ENSMNEG00000034547 #29 RDM1 (ENSMNEG00000039977) LYZL6 (ENSMNEG00000036987) CCL16 (ENSMNEG00000033984) #30 CCL14 (ENSMNEG00000045147) #31 CCL15 (ENSMNEG00000043539) #32 CCL23 (ENSMNEG00000034456) #32 CCL18 (ENSMNEG00000030173) #37 ENSMNEG00000034156 #37 Vervet Monkey MODERN SPECIES 7 CCT6B (ENSCSAG00000006334) ZNF830 (ENSCSAG00000000556) LIG3 (ENSCSAG00000006328) RFFL (ENSCSAG00000006321) RAD51D (ENSCSAG00000006316) FNDC8 (ENSCSAG00000006312) NLE1 (ENSCSAG00000006308) UNC45B (ENSCSAG00000006303) SLFN5 (ENSCSAG00000006300) ##20 SLFN11 (ENSCSAG00000006296) #19 SLFN12 (ENSCSAG00000006292) #18 SLFN13 (ENSCSAG00000006288) #19 SLFN12L (ENSCSAG00000006280) #18 SLFN14 (ENSCSAG00000006274) #20 PEX12 (ENSCSAG00000006267) #21 AP2B1 (ENSCSAG00000006260) #22 RASL10B (ENSCSAG00000006252) #23 GAS2L2 (ENSCSAG00000006249) C17orf50 (ENSCSAG00000006245) #25 MMP28 (ENSCSAG00000006243) #26 TAF15 (ENSCSAG00000006241) #27 HEATR9 (ENSCSAG00000006228) #28 ENSCSAG00000006213 #29 RDM1 (ENSCSAG00000006209) LYZL6 (ENSCSAG00000006206) CCL16 (ENSCSAG00000006203) #30 CCL14 (ENSCSAG00000006201) #31 CCL15 (ENSCSAG00000006198) #32 CCL18 (ENSCSAG00000006194) #37 ENSCSAG00000006191 ##37 ENSCSAG00000006185 Rhinopithecus ANCESTRAL SPECIES 320 ENSGT00410000025651.A.b.a.a.b.c #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00390000010391.w.b ENSGT00410000025651.A.b.a.a.b.d #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.a #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00940000168309 ENSGT00390000018397 ENSGT00940000161690 Black snub-nosed monkey MODERN SPECIES 1029 SLFN11 (ENSRBIG00000034584) #19 ENSRBIG00000017577 ENSRBIG00000024045 SLFN12 (ENSRBIG00000031538) #18 SLFN13 (ENSRBIG00000043402) #19 SLFN12L (ENSRBIG00000038479) #18 SLFN14 (ENSRBIG00000029031) #20 PEX12 (ENSRBIG00000013732) #21 AP2B1 (ENSRBIG00000031992) #22 RASL10B (ENSRBIG00000038353) #23 GAS2L2 (ENSRBIG00000026402) C17orf50 (ENSRBIG00000043080) #25 MMP28 (ENSRBIG00000042961) #26 TAF15 (ENSRBIG00000043192) #27 HEATR9 (ENSRBIG00000034249) #28 ENSRBIG00000039186 #29 ENSRBIG00000033529 RDM1 (ENSRBIG00000030000) LYZL6 (ENSRBIG00000029037) Golden snub-nosed monkey MODERN SPECIES 2519 ENSRROG00000020738 SLFN12 (ENSRROG00000018265) #18 SLFN13 (ENSRROG00000018236) #19 ENSRROG00000043072 ENSRROG00000001089 SLFN12L (ENSRROG00000039374) #18 ENSRROG00000045772 SLFN14 (ENSRROG00000042714) #20 PEX12 (ENSRROG00000040662) #21 AP2B1 (ENSRROG00000030200) #22 RASL10B (ENSRROG00000030917) #23 GAS2L2 (ENSRROG00000031550) C17orf50 (ENSRROG00000027811) #25 MMP28 (ENSRROG00000029324) #26 TAF15 (ENSRROG00000029426) #27 HEATR9 (ENSRROG00000010829) #28 ENSRROG00000029256 RDM1 (ENSRROG00000035242) LYZL6 (ENSRROG00000037519) Catarrhini ANCESTRAL SPECIES ENSGT00940000155206.d.b #22 Hominoidea ANCESTRAL SPECIES 164 ENSGT00940000155206.d.b #22 ENSGT00940000153309.c.b.a.a Hominidae ANCESTRAL SPECIES 163 ENSGT00940000155206.d.b #22 ENSGT00940000153309.c.b.a.a Homo/Pan/Gorilla group ANCESTRAL SPECIES 57 ENSGT00940000155206.d.b #22 ENSGT00940000153889.e.a.a ENSGT00950000182869.e.a.b.sb.b.a.a.b.b ENSGT00940000158335.d Homo/Pan group ANCESTRAL SPECIES 76 ENSGT00940000155206.d.b #22 ENSGT00940000153889.e.a.a ENSGT00950000182869.e.a.b.sb.b.a.a.b.b Pan ANCESTRAL SPECIES 6 ENSGT00390000003231.a.f.b ENSGT00390000018706.m.b.b.l.b ENSGT00950000183123.h.b ENSGT00940000161632.c ENSGT00940000158987 ENSGT00940000159060 ENSGT00940000159149 ENSGT00940000159092 ENSGT00480000042679.a ENSGT00940000159162 ENSGT00940000153239.B.i.a.b ENSGT00940000157822 ENSGT00940000163054 ENSGT00730000111097.e ENSGT00940000162927 ENSGT00940000155206.d.b #22 ENSGT00940000153889.e.a.a ENSGT00950000182869.e.a.b.sb.b.a.a.b.b ENSGT00940000158335.c ENSGT00940000162668 ENSGT00940000154977.l.b.b ENSGT00940000165485 ENSGT00390000003732 ENSGT00950000183119.a.e.a.d.a.a ENSGT00940000159818 ENSGT00390000001134.b ENSGT00940000154911.v ENSGT00950000182994.A.n.a ENSGT00390000000141 ENSGT00940000159611 ENSGT00950000183121.b.b.b.a Chimpanzee DUPLICATION Chimpanzee MODERN SPECIES 972 ENSPTRG00000050488 ENSPTRG00000052173 NOX1 (ENSPTRG00000048908) CSTF2 (ENSPTRG00000022090) SYTL4 (ENSPTRG00000022089) SRPX2 (ENSPTRG00000022088) TSPAN6 (ENSPTRG00000022087) TNMD (ENSPTRG00000022086) PCDH19 (ENSPTRG00000022085) ENSPTRG00000043192 DIAPH2 (ENSPTRG00000022082) ENSPTRG00000048048 ENSPTRG00000033789 FAM133A (ENSPTRG00000044529) NAP1L3 (ENSPTRG00000022080) ENSPTRG00000043794 #22 ENSPTRG00000043870 ENSPTRG00000022079 PABPC5 (ENSPTRG00000022078) ENSPTRG00000045302 ENSPTRG00000044589 CPXCR1 (ENSPTRG00000022076) ENSPTRG00000049218 KLHL4 (ENSPTRG00000022075) DACH2 (ENSPTRG00000022073) ENSPTRG00000052049 CHM (ENSPTRG00000022071) POF1B (ENSPTRG00000022070) ZNF711 (ENSPTRG00000022069) ENSPTRG00000022068 ENSPTRG00000043670 Chimpanzee MODERN SPECIES 843 ENSPTRG00000047694 #22 ENSPTRG00000047333 ENSPTRG00000051629 Bonobo MODERN SPECIES 369 XKRX (ENSPPAG00000030677) ENSPPAG00000031058 ENSPPAG00000027791 NOX1 (ENSPPAG00000021977) CSTF2 (ENSPPAG00000031804) SYTL4 (ENSPPAG00000026955) SRPX2 (ENSPPAG00000039226) TSPAN6 (ENSPPAG00000038316) TNMD (ENSPPAG00000035804) PCDH19 (ENSPPAG00000039228) ENSPPAG00000034644 DIAPH2 (ENSPPAG00000040909) ENSPPAG00000038822 FAM133A (ENSPPAG00000017635) NAP1L3 (ENSPPAG00000019923) ENSPPAG00000007354 #22 ENSPPAG00000003031 ENSPPAG00000040878 ENSPPAG00000030962 ENSPPAG00000043443 PABPC5 (ENSPPAG00000007378) ENSPPAG00000041507 ENSPPAG00000038346 CPXCR1 (ENSPPAG00000016441) ENSPPAG00000026574 KLHL4 (ENSPPAG00000043431) ENSPPAG00000036042 ENSPPAG00000024013 CHM (ENSPPAG00000034301) ENSPPAG00000028498 POF1B (ENSPPAG00000033485) Gorilla MODERN SPECIES 523 ENSGGOG00000027879 NOX1 (ENSGGOG00000006886) CSTF2 (ENSGGOG00000022267) SYTL4 (ENSGGOG00000001159) SRPX2 (ENSGGOG00000010009) TSPAN6 (ENSGGOG00000010003) TNMD (ENSGGOG00000017007) PCDH19 (ENSGGOG00000001810) ENSGGOG00000027167 ENSGGOG00000038151 DIAPH2 (ENSGGOG00000002859) ENSGGOG00000038270 FAM133A (ENSGGOG00000043974) NAP1L3 (ENSGGOG00000016989) ENSGGOG00000025902 ENSGGOG00000039790 #22 ENSGGOG00000025897 ENSGGOG00000042618 ENSGGOG00000008584 PABPC5 (ENSGGOG00000007622) ENSGGOG00000037634 ENSGGOG00000036979 CPXCR1 (ENSGGOG00000026865) RPSA (ENSGGOG00000036643) KLHL4 (ENSGGOG00000002307) DACH2 (ENSGGOG00000007231) ENSGGOG00000040803 CHM (ENSGGOG00000022912) POF1B (ENSGGOG00000016908) ZNF711 (ENSGGOG00000006110) SATL1 (ENSGGOG00000016333) Gibbon MODERN SPECIES 449 ENSNLEG00000034385 NOX1 (ENSNLEG00000007516) CSTF2 (ENSNLEG00000007510) SYTL4 (ENSNLEG00000007507) SRPX2 (ENSNLEG00000007506) TSPAN6 (ENSNLEG00000007505) TNMD (ENSNLEG00000007504) PCDH19 (ENSNLEG00000007503) ENSNLEG00000013567 ENSNLEG00000030185 DIAPH2 (ENSNLEG00000000884) ENSNLEG00000019052 FAM133A (ENSNLEG00000019038) NAP1L3 (ENSNLEG00000000881) ENSNLEG00000034978 ENSNLEG00000029399 #22 ENSNLEG00000029321 PABPC5 (ENSNLEG00000035086) ENSNLEG00000036286 ENSNLEG00000035924 ENSNLEG00000027997 CPXCR1 (ENSNLEG00000002894) KLHL4 (ENSNLEG00000002824) ENSNLEG00000002822 DACH2 (ENSNLEG00000002793) ENSNLEG00000027890 CHM (ENSNLEG00000002762) ENSNLEG00000032608 POF1B (ENSNLEG00000002694) ZNF711 (ENSNLEG00000002656) APOOL (ENSNLEG00000002634) Platyrrhini DUPLICATION Platyrrhini ANCESTRAL SPECIES ENSGT00940000155206.d.c #22 Cebidae ANCESTRAL SPECIES ENSGT00940000155206.d.c #22 Cebidae_a ANCESTRAL SPECIES ENSGT00940000155206.d.c #22 Bolivian squirrel monkey MODERN SPECIES 74 SLFN5 (ENSSBOG00000021890) ##20 SLFN11 (ENSSBOG00000023846) #19 SLFN14 (ENSSBOG00000027643) #20 PEX12 (ENSSBOG00000032853) #21 AP2B1 (ENSSBOG00000034151) #22 ENSSBOG00000021189 RASL10B (ENSSBOG00000027306) #23 GAS2L2 (ENSSBOG00000033199) MMP28 (ENSSBOG00000023020) #26 ENSSBOG00000032185 #27 HEATR9 (ENSSBOG00000030182) #28 ENSSBOG00000033218 #29 RDM1 (ENSSBOG00000028130) LYZL6 (ENSSBOG00000029469) CCL16 (ENSSBOG00000025408) #30 CCL14 (ENSSBOG00000034435) #31 ENSSBOG00000023945 ENSSBOG00000023104 ENSSBOG00000033067 ENSSBOG00000008746 Capuchin MODERN SPECIES 305 ENSCCAG00000023038 #22 ENSCCAG00000022234 ENSCCAG00000029629 CPXCR1 (ENSCCAG00000027844) Mas night monkey MODERN SPECIES 1179 ENSANAG00000037710 FAM133A (ENSANAG00000019379) NAP1L3 (ENSANAG00000029163) ENSANAG00000031749 ENSANAG00000023977 ENSANAG00000031272 PABPC5 (ENSANAG00000005063) ENSANAG00000013923 ENSANAG00000031195 ENSANAG00000022190 ENSANAG00000032607 #22 ENSANAG00000026733 ENSANAG00000031886 ENSANAG00000021711 CPXCR1 (ENSANAG00000025456) ENSANAG00000021853 KLHL4 (ENSANAG00000028429) ENSANAG00000029697 CHM (ENSANAG00000025422) POF1B (ENSANAG00000027640) ZNF711 (ENSANAG00000027967) Platyrrhini ANCESTRAL SPECIES 1 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165089 ENSGT01100000263482.C.c.b.b.a.b.a #37 ENSGT01100000263482.C.c.b.b.a.b.b #37 Cebidae ANCESTRAL SPECIES 10 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165089 ENSGT01100000263482.C.c.b.b.a.b.a #37 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT00520000060616 Cebidae_a ANCESTRAL SPECIES 1 ENSGT01060000248892 ENSGT01100000263482.F ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018397 ENSGT00940000161690 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165089 ENSGT01100000263482.C.c.b.b.a.b.a #37 ENSGT01100000263482.C.c.b.b.a.b.b #37 ENSGT00390000016675 Capuchin DUPLICATION Capuchin MODERN SPECIES 85 ENSCCAG00000006712 ENSCCAG00000027028 TMEM132E (ENSCCAG00000032199) ENSCCAG00000025546 CCT6B (ENSCCAG00000033971) LIG3 (ENSCCAG00000004189) RFFL (ENSCCAG00000015388) RAD51D (ENSCCAG00000022233) FNDC8 (ENSCCAG00000021053) NLE1 (ENSCCAG00000030907) UNC45B (ENSCCAG00000020566) SLFN5 (ENSCCAG00000033924) ##20 SLFN11 (ENSCCAG00000013862) #19 SLFN14 (ENSCCAG00000024954) #20 PEX12 (ENSCCAG00000022946) #21 AP2B1 (ENSCCAG00000035115) #22 RASL10B (ENSCCAG00000029475) #23 GAS2L2 (ENSCCAG00000025203) C17orf50 (ENSCCAG00000024927) #25 MMP28 (ENSCCAG00000027683) #26 TAF15 (ENSCCAG00000036025) #27 HEATR9 (ENSCCAG00000033181) #28 ENSCCAG00000034447 #29 RDM1 (ENSCCAG00000035763) ENSCCAG00000036951 ENSCCAG00000030889 Capuchin MODERN SPECIES 5 MBOAT4 (ENSCCAG00000037994) LEPROTL1 (ENSCCAG00000033916) SARAF (ENSCCAG00000027268) DUSP4 (ENSCCAG00000036753) TNKS (ENSCCAG00000020538) PPP1R3B (ENSCCAG00000001875) ERI1 (ENSCCAG00000032048) MFHAS1 (ENSCCAG00000024993) ENSCCAG00000032742 PRAG1 (ENSCCAG00000025342) LONRF1 (ENSCCAG00000019553) TRMT9B (ENSCCAG00000032783) DLC1 (ENSCCAG00000008032) ENSCCAG00000022045 ENSCCAG00000033627 ENSCCAG00000028915 #22 SGCZ (ENSCCAG00000027911) TUSC3 (ENSCCAG00000021149) Marmoset MODERN SPECIES 15 ENSCJAG00000003480 ANK2 (ENSCJAG00000003564) ENSCJAG00000083059 ENSCJAG00000081336 LARP7 (ENSCJAG00000003711) ENSCJAG00000072826 ZGRF1 (ENSCJAG00000003724) ENSCJAG00000073748 NEUROG2 (ENSCJAG00000003772) ENSCJAG00000056186 ALPK1 (ENSCJAG00000003780) ENSCJAG00000042606 TIFA (ENSCJAG00000038735) AP1AR (ENSCJAG00000043368) ENSCJAG00000083097 ENSCJAG00000077926 #22 ENSCJAG00000083735 ENSCJAG00000003822 ENSCJAG00000060028 PITX2 (ENSCJAG00000003830) ENPEP (ENSCJAG00000003856) ENSCJAG00000074022 ENSCJAG00000071394 ELOVL6 (ENSCJAG00000038180) ENSCJAG00000063162 ENSCJAG00000078793 EGF (ENSCJAG00000003982) LRIT3 (ENSCJAG00000004015) RRH (ENSCJAG00000004028) GAR1 (ENSCJAG00000082261) CFI (ENSCJAG00000004249) Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 1054 ENSANAG00000038143 SPRY1 (ENSANAG00000019703) SPATA5 (ENSANAG00000024588) NUDT6 (ENSANAG00000014690) FGF2 (ENSANAG00000037733) IL21 (ENSANAG00000033883) IL2 (ENSANAG00000026729) ENSANAG00000034045 BLTP1 (ENSANAG00000034336) TRPC3 (ENSANAG00000032754) BBS7 (ENSANAG00000037930) ENSANAG00000029372 EXOSC9 (ENSANAG00000024817) ENSANAG00000027799 ANXA5 (ENSANAG00000019060) ENSANAG00000037751 #22 QRFPR (ENSANAG00000036183) TNIP3 (ENSANAG00000021165) NDNF (ENSANAG00000021660) PRDM5 (ENSANAG00000027411) MAD2L1 (ENSANAG00000022503) PDE5A (ENSANAG00000036136) ENSANAG00000036422 ENSANAG00000003057 C4orf3 (ENSANAG00000034334) USP53 (ENSANAG00000037495) MYOZ2 (ENSANAG00000035756) SYNPO2 (ENSANAG00000022499) SEC24D (ENSANAG00000028409) METTL14 (ENSANAG00000024273) PRSS12 (ENSANAG00000024981) Mas night monkey MODERN SPECIES 805 LIG3 (ENSANAG00000027289) RFFL (ENSANAG00000024559) RAD51D (ENSANAG00000026327) FNDC8 (ENSANAG00000038020) NLE1 (ENSANAG00000029916) UNC45B (ENSANAG00000029104) ENSANAG00000018728 ENSANAG00000020029 ENSANAG00000019510 SLFN5 (ENSANAG00000020516) ##20 SLFN11 (ENSANAG00000018777) #19 ENSANAG00000038116 SLFN14 (ENSANAG00000038117) #20 PEX12 (ENSANAG00000007379) #21 ENSANAG00000019452 #22 RASL10B (ENSANAG00000022158) #23 GAS2L2 (ENSANAG00000029020) C17orf50 (ENSANAG00000033358) #25 MMP28 (ENSANAG00000037562) #26 TAF15 (ENSANAG00000020904) #27 HEATR9 (ENSANAG00000034198) #28 ENSANAG00000038037 #29 RDM1 (ENSANAG00000032752) LYZL6 (ENSANAG00000034516) CCL16 (ENSANAG00000024769) #30 CCL14 (ENSANAG00000034460) #31 ENSANAG00000038290 #32 CCL4L2 (ENSANAG00000032119) ##37 ENSANAG00000020518 #37 ENSANAG00000036612 #37 Tarsier MODERN SPECIES 7253 RAD51D (ENSTSYG00000002439) FNDC8 (ENSTSYG00000033775) NLE1 (ENSTSYG00000005707) UNC45B (ENSTSYG00000005718) ENSTSYG00000012984 ENSTSYG00000012957 ##20 ENSTSYG00000027201 SLFN13 (ENSTSYG00000035997) #19 ENSTSYG00000032197 #18 SLFN14 (ENSTSYG00000026907) #20 PEX12 (ENSTSYG00000013016) #21 AP2B1 (ENSTSYG00000013030) #22 RASL10B (ENSTSYG00000026278) #23 ENSTSYG00000036881 #24 ANXA9 (ENSTSYG00000012630) Strepsirrhini ANCESTRAL SPECIES 4 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000166945 Lemuriformes ANCESTRAL SPECIES 2 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000166945 Lemuriformes_a ANCESTRAL SPECIES ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000018505.b.j ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Coquerels sifaka DUPLICATION Coquerels sifaka MODERN SPECIES 319 ENSPCOG00000024010 RASA1 (ENSPCOG00000002214) TMEM161B (ENSPCOG00000014869) ENSPCOG00000019704 MEF2C (ENSPCOG00000015854) CETN3 (ENSPCOG00000008573) MBLAC2 (ENSPCOG00000024583) ENSPCOG00000023427 LYSMD3 (ENSPCOG00000009535) ENSPCOG00000016607 ENSPCOG00000026419 ARRDC3 (ENSPCOG00000017963) ENSPCOG00000019606 #22 ENSPCOG00000028394 NR2F1 (ENSPCOG00000017525) FAM172A (ENSPCOG00000024072) KIAA0825 (ENSPCOG00000021681) SLF1 (ENSPCOG00000019438) MCTP1 (ENSPCOG00000027694) SKIC3 (ENSPCOG00000018234) ARSK (ENSPCOG00000017803) SPATA9 (ENSPCOG00000018648) RHOBTB3 (ENSPCOG00000014621) GLRX (ENSPCOG00000019782) Coquerels sifaka MODERN SPECIES 414 CCT6B (ENSPCOG00000022222) LIG3 (ENSPCOG00000025771) RFFL (ENSPCOG00000014273) RAD51D (ENSPCOG00000019951) FNDC8 (ENSPCOG00000025950) NLE1 (ENSPCOG00000016524) UNC45B (ENSPCOG00000026606) SLFN5 (ENSPCOG00000000263) ##20 SLFN13 (ENSPCOG00000015060) #19 SLFN14 (ENSPCOG00000019040) #20 PEX12 (ENSPCOG00000018773) #21 ENSPCOG00000021710 #22 RASL10B (ENSPCOG00000010262) #23 GAS2L2 (ENSPCOG00000008823) ENSPCOG00000017213 MMP28 (ENSPCOG00000021300) #26 TAF15 (ENSPCOG00000007032) #27 HEATR9 (ENSPCOG00000020659) #28 ENSPCOG00000009360 #29 ENSPCOG00000012531 CCL16 (ENSPCOG00000015310) #30 CCL14 (ENSPCOG00000000123) #31 ENSPCOG00000018507 #32 ENSPCOG00000017450 ##37 ENSPCOG00000026656 ##37 HEATR6 (ENSPCOG00000007339) HNF1B (ENSPCOG00000023250) Greater bamboo lemur MODERN SPECIES 167 ENSPSMG00000017180 CCT6B (ENSPSMG00000017271) ZNF830 (ENSPSMG00000017386) LIG3 (ENSPSMG00000017498) RFFL (ENSPSMG00000017643) RAD51D (ENSPSMG00000017716) FNDC8 (ENSPSMG00000017734) NLE1 (ENSPSMG00000017794) UNC45B (ENSPSMG00000017855) ENSPSMG00000017874 ##20 ENSPSMG00000017877 ##20 SLFN13 (ENSPSMG00000017890) #19 ENSPSMG00000017899 SLFN14 (ENSPSMG00000017906) #20 PEX12 (ENSPSMG00000017923) #21 AP2B1 (ENSPSMG00000018648) #22 RASL10B (ENSPSMG00000019772) #23 GAS2L2 (ENSPSMG00000019805) C17orf50 (ENSPSMG00000019813) #25 MMP28 (ENSPSMG00000019848) #26 TAF15 (ENSPSMG00000019965) #27 HEATR9 (ENSPSMG00000019980) #28 ENSPSMG00000019990 #29 ENSPSMG00000020004 CCL16 (ENSPSMG00000020013) #30 CCL14 (ENSPSMG00000020021) #31 ENSPSMG00000020027 #32 ENSPSMG00000020033 #32 ENSPSMG00000020039 ##37 ENSPSMG00000020065 #37 ENSPSMG00000020079 ##37 Mouse lemur MODERN SPECIES 7 CCL8 (ENSMICG00000037888) ##37 CCL13 (ENSMICG00000036035) ##37 CCL1 (ENSMICG00000042374) ##37 TMEM132E (ENSMICG00000003085) CCT6B (ENSMICG00000035976) LIG3 (ENSMICG00000006814) RFFL (ENSMICG00000006829) RAD51D (ENSMICG00000043657) FNDC8 (ENSMICG00000044023) NLE1 (ENSMICG00000001256) UNC45B (ENSMICG00000001264) SLFN5 (ENSMICG00000033107) ##20 SLFN13 (ENSMICG00000047620) #19 SLFN14 (ENSMICG00000017034) #20 PEX12 (ENSMICG00000045292) #21 AP2B1 (ENSMICG00000017045) #22 RASL10B (ENSMICG00000034231) #23 ENSMICG00000030480 #24 C17orf50 (ENSMICG00000017049) #25 MMP28 (ENSMICG00000017052) #26 TAF15 (ENSMICG00000017057) #27 HEATR9 (ENSMICG00000001796) #28 ENSMICG00000042451 #29 CCL16 (ENSMICG00000029697) #30 CCL14 (ENSMICG00000027552) #31 ENSMICG00000029419 #32 ENSMICG00000042571 #32 ENSMICG00000038715 ##37 ENSMICG00000008737 ##37 ENSMICG00000041554 ##37 HEATR6 (ENSMICG00000008703) Bushbaby MODERN SPECIES 209 SLFN14 (ENSOGAG00000006765) #20 PEX12 (ENSOGAG00000004009) #21 AP2B1 (ENSOGAG00000005826) #22 RASL10B (ENSOGAG00000005829) #23 GAS2L2 (ENSOGAG00000031874) MMP28 (ENSOGAG00000011716) #26 TAF15 (ENSOGAG00000011719) #27 HEATR9 (ENSOGAG00000011724) #28 ENSOGAG00000011726 #29 CCL16 (ENSOGAG00000033836) #30 CCL14 (ENSOGAG00000027314) #31 ENSOGAG00000001316 #32 ENSOGAG00000012746 ##37 ENSOGAG00000028390 ##37 HEATR6 (ENSOGAG00000008153) HNF1B (ENSOGAG00000000869) DDX52 (ENSOGAG00000000868) SYNRG (ENSOGAG00000000867) Laurasiatheria ANCESTRAL SPECIES 4 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 Eulipotyphla ANCESTRAL SPECIES 114 ENSGT00410000025651.A.b.b #20 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 Hedgehog MODERN SPECIES 6778 AP2B1 (ENSEEUG00000008571) #22 RASL10B (ENSEEUG00000008876) #23 GAS2L2 (ENSEEUG00000008890) ENSEEUG00000009107 #25 MMP28 (ENSEEUG00000009150) #26 Common shrew MODERN SPECIES 6415 ENSSARG00000011880 #20 AP2B1 (ENSSARG00000011885) #22 Laurasiatheria_a ANCESTRAL SPECIES 4 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Laurasiatheria_b ANCESTRAL SPECIES 4 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Laurasiatheria_c ANCESTRAL SPECIES 3 ENSGT00940000154991.b ENSGT00390000003008 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01050000245362 #34 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 Chiroptera ANCESTRAL SPECIES 2 ENSGT00940000154991.b ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 Microchiroptera ANCESTRAL SPECIES ENSGT00940000154991.b ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 Microbat DUPLICATION Microbat MODERN SPECIES 1324 CCT6B (ENSMLUG00000012459) ZNF830 (ENSMLUG00000012466) LIG3 (ENSMLUG00000012470) RFFL (ENSMLUG00000012490) RAD51D (ENSMLUG00000012495) FNDC8 (ENSMLUG00000012504) NLE1 (ENSMLUG00000012506) UNC45B (ENSMLUG00000012519) ENSMLUG00000029329 ##20 ENSMLUG00000017543 #19 SLFN14 (ENSMLUG00000002831) #20 PEX12 (ENSMLUG00000002834) #21 ENSMLUG00000002837 #22 RASL10B (ENSMLUG00000002848) #23 GAS2L2 (ENSMLUG00000015013) C17orf50 (ENSMLUG00000002867) #25 MMP28 (ENSMLUG00000002856) #26 TAF15 (ENSMLUG00000002870) #27 HEATR9 (ENSMLUG00000002879) #28 ENSMLUG00000002891 #29 CCL16 (ENSMLUG00000004832) #30 ENSMLUG00000028764 ##37 ENSMLUG00000002895 #37 ENSMLUG00000002898 ##37 ENSMLUG00000025038 ENSMLUG00000025164 ENSMLUG00000025097 ENSMLUG00000027241 Microbat MODERN SPECIES 715 ENSMLUG00000028723 #22 Greater horseshoe bat MODERN SPECIES 13 ENSRFEG00010019773 CCL2 (ENSRFEG00010019809) ##37 CCL8 (ENSRFEG00010019872) ##37 TMEM132E (ENSRFEG00010019902) CCT6B (ENSRFEG00010020082) ZNF830 (ENSRFEG00010020329) LIG3 (ENSRFEG00010020352) RFFL (ENSRFEG00010020407) RAD51D (ENSRFEG00010020450) FNDC8 (ENSRFEG00010020501) NLE1 (ENSRFEG00010020540) UNC45B (ENSRFEG00010020648) ENSRFEG00010020802 #19 SLFN14 (ENSRFEG00010020815) #20 PEX12 (ENSRFEG00010020841) #21 AP2B1 (ENSRFEG00010020872) #22 RASL10B (ENSRFEG00010020930) #23 GAS2L2 (ENSRFEG00010020946) C17orf50 (ENSRFEG00010020982) #25 MMP28 (ENSRFEG00010021011) #26 TAF15 (ENSRFEG00010021040) #27 HEATR9 (ENSRFEG00010021087) #28 ENSRFEG00010021148 #29 CCL16 (ENSRFEG00010021167) #30 CCL14 (ENSRFEG00010021174) #31 ENSRFEG00010021181 #32 ENSRFEG00010005380 ENSRFEG00010005430 ##37 ENSRFEG00010005457 ENSRFEG00010005494 ##37 ENSRFEG00010005514 ##37 Megabat MODERN SPECIES 2816 RAD51D (ENSPVAG00000003905) ENSPVAG00000003917 NLE1 (ENSPVAG00000003920) UNC45B (ENSPVAG00000003925) ENSPVAG00000003934 #19 PEX12 (ENSPVAG00000003936) #21 AP2B1 (ENSPVAG00000003940) #22 RASL10B (ENSPVAG00000003944) #23 GAS2L2 (ENSPVAG00000003947) C17orf50 (ENSPVAG00000003950) #25 MMP28 (ENSPVAG00000003951) #26 TAF15 (ENSPVAG00000003952) #27 Equus ANCESTRAL SPECIES ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a.b #19 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01050000245362 #34 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000166945.d Donkey MODERN SPECIES 4 TMEM132E (ENSEASG00005010955) CCT6B (ENSEASG00005010982) ZNF830 (ENSEASG00005011187) LIG3 (ENSEASG00005011191) RFFL (ENSEASG00005011194) RAD51D (ENSEASG00005011196) FNDC8 (ENSEASG00005011197) NLE1 (ENSEASG00005011199) UNC45B (ENSEASG00005011201) SLFN5 (ENSEASG00005011202) ##20 ENSEASG00005036238 #19 ENSEASG00005011206 #18 ENSEASG00005011205 #19 SLFN14 (ENSEASG00005011210) #20 PEX12 (ENSEASG00005035401) #21 AP2B1 (ENSEASG00005011219) #22 RASL10B (ENSEASG00005011223) #23 GAS2L2 (ENSEASG00005011225) C17orf50 (ENSEASG00005028802) #25 MMP28 (ENSEASG00005011229) #26 TAF15 (ENSEASG00005011235) #27 HEATR9 (ENSEASG00005011246) #28 ENSEASG00005031059 #29 ENSEASG00005025972 #30 ENSEASG00005031361 #31 ENSEASG00005011251 ENSEASG00005011253 ##37 ENSEASG00005011254 #34 ENSEASG00005035439 ##37 ENSEASG00005011256 ENSEASG00005011258 Horse MODERN SPECIES 2 TMEM132E (ENSECAG00000023816) ZNF830 (ENSECAG00000003872) CCT6B (ENSECAG00000021342) LIG3 (ENSECAG00000016416) RFFL (ENSECAG00000015502) RAD51D (ENSECAG00000014139) FNDC8 (ENSECAG00000014023) NLE1 (ENSECAG00000011072) UNC45B (ENSECAG00000001034) SLFN5 (ENSECAG00000017186) ##20 ENSECAG00000047377 #19 ENSECAG00000060188 ENSECAG00000017158 #18 ENSECAG00000039393 #19 PEX12 (ENSECAG00000015368) #21 AP2B1 (ENSECAG00000009033) #22 RASL10B (ENSECAG00000008089) #23 GAS2L2 (ENSECAG00000007690) C11H17orf50 (ENSECAG00000007503) #25 MMP28 (ENSECAG00000004234) #26 TAF15 (ENSECAG00000000718) #27 HEATR9 (ENSECAG00000024894) #28 ENSECAG00000030869 #30 ENSECAG00000024882 ENSECAG00000024886 #31 ENSECAG00000024790 ##37 ENSECAG00000024640 ##37 ENSECAG00000022992 ##37 ENSECAG00000037915 ENSECAG00000056927 ENSECAG00000029928 Carnivora ANCESTRAL SPECIES 9 ENSGT01100000263482.F ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Caniformia ANCESTRAL SPECIES 6 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Caniformia_b ANCESTRAL SPECIES 21 ENSGT01030000234760 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 Ursidae ANCESTRAL SPECIES 18 ENSGT01030000234760 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000165089 Ursus ANCESTRAL SPECIES 8 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000161793.y.b ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 Polar bear MODERN SPECIES 192 CCL13 (ENSUMAG00000015615) ##37 ENSUMAG00000015623 CCT6B (ENSUMAG00000015641) ZNF830 (ENSUMAG00000015731) LIG3 (ENSUMAG00000015895) RFFL (ENSUMAG00000016713) RAD51D (ENSUMAG00000016723) FNDC8 (ENSUMAG00000016726) NLE1 (ENSUMAG00000016727) UNC45B (ENSUMAG00000016733) ENSUMAG00000016792 ##20 ENSUMAG00000016794 ##20 ENSUMAG00000016797 #18 SLFN14 (ENSUMAG00000016804) #20 PEX12 (ENSUMAG00000016839) #21 AP2B1 (ENSUMAG00000016846) #22 GAS2L2 (ENSUMAG00000016854) TAF15 (ENSUMAG00000016876) #27 HEATR9 (ENSUMAG00000016881) #28 ENSUMAG00000016895 #29 ENSUMAG00000016900 #31 ENSUMAG00000016907 ##37 ENSUMAG00000016911 ENSUMAG00000016915 ENSUMAG00000016920 #32 ENSUMAG00000016926 ##37 ENSUMAG00000016930 #37 ENSUMAG00000016931 ##37 ENSUMAG00000016935 ENSUMAG00000016939 ENSUMAG00000016943 American black bear MODERN SPECIES 3296 SLFN14 (ENSUAMG00000008919) #20 PEX12 (ENSUAMG00000008910) #21 ENSUAMG00000008903 #22 Giant Panda MODERN SPECIES 4 CCL13 (ENSAMEG00000023685) ##37 CCL1 (ENSAMEG00000005795) ##37 TMEM132E (ENSAMEG00000014409) CCT6B (ENSAMEG00000014473) ZNF830 (ENSAMEG00000019495) LIG3 (ENSAMEG00000014509) RFFL (ENSAMEG00000014564) RAD51D (ENSAMEG00000014577) FNDC8 (ENSAMEG00000014606) NLE1 (ENSAMEG00000014614) UNC45B (ENSAMEG00000014637) SLFN5 (ENSAMEG00000014706) ##20 ENSAMEG00000014720 #18 SLFN14 (ENSAMEG00000014725) #20 PEX12 (ENSAMEG00000014739) #21 AP2B1 (ENSAMEG00000014745) #22 GAS2L2 (ENSAMEG00000014830) RASL10B (ENSAMEG00000014822) #23 C17orf50 (ENSAMEG00000027935) #25 MMP28 (ENSAMEG00000014834) #26 ENSAMEG00000014860 #27 ENSAMEG00000014896 #28 CCL5 (ENSAMEG00000029436) #29 ENSAMEG00000014904 #30 ENSAMEG00000027516 #31 ENSAMEG00000029251 #32 ENSAMEG00000030600 ##37 ENSAMEG00000011334 #37 ENSAMEG00000023646 ##37 ENSAMEG00000011328 ENSAMEG00000028046 Mustelinae ANCESTRAL SPECIES 2 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01100000263482.F ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492.c ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 American mink MODERN SPECIES 37 ENSNVIG00000019653 CCL8 (ENSNVIG00000019665) ##37 CCL13 (ENSNVIG00000019676) ##37 CCL1 (ENSNVIG00000019684) ##37 TMEM132E (ENSNVIG00000019694) CCT6B (ENSNVIG00000019712) ZNF830 (ENSNVIG00000019817) LIG3 (ENSNVIG00000019831) RFFL (ENSNVIG00000019960) RAD51D (ENSNVIG00000020004) FNDC8 (ENSNVIG00000020043) NLE1 (ENSNVIG00000020060) UNC45B (ENSNVIG00000020104) SLFN14 (ENSNVIG00000020175) #20 PEX12 (ENSNVIG00000020190) #21 ENSNVIG00000020204 #22 RSLAB (ENSNVIG00000020253) #23 GAS2L2 (ENSNVIG00000020273) C17orf50 (ENSNVIG00000020299) #25 MMP28 (ENSNVIG00000020319) #26 TAF15 (ENSNVIG00000020344) #27 HEATR9 (ENSNVIG00000020408) #28 CCL5 (ENSNVIG00000020449) #29 CCL16 (ENSNVIG00000020466) #30 CCL14 (ENSNVIG00000020482) #31 ENSNVIG00000020490 ##37 ENSNVIG00000020505 #37 CL3L1 (ENSNVIG00000020511) ##37 CCL4 (ENSNVIG00000020522) ##37 ENSNVIG00000020540 ENSNVIG00000020548 Ferret MODERN SPECIES 181 ENSMPUG00000014849 TMEM132E (ENSMPUG00000014852) ENSMPUG00000014853 CCT6B (ENSMPUG00000014856) ZNF830 (ENSMPUG00000019518) ENSMPUG00000019522 ENSMPUG00000014859 RFFL (ENSMPUG00000014861) ENSMPUG00000014877 RAD51D (ENSMPUG00000014878) FNDC8 (ENSMPUG00000014880) NLE1 (ENSMPUG00000014893) UNC45B (ENSMPUG00000014896) SLFN14 (ENSMPUG00000014899) #20 PEX12 (ENSMPUG00000014908) #21 AP2B1 (ENSMPUG00000014910) #22 RASL10B (ENSMPUG00000014916) #23 GAS2L2 (ENSMPUG00000014920) MMP28 (ENSMPUG00000014927) #26 TAF15 (ENSMPUG00000014948) #27 HEATR9 (ENSMPUG00000014952) #28 ENSMPUG00000014962 #29 ENSMPUG00000014978 #31 ENSMPUG00000014967 #37 ENSMPUG00000014979 #32 ENSMPUG00000014983 ##37 ENSMPUG00000014985 ##37 ENSMPUG00000014994 ##37 ENSMPUG00000014996 ENSMPUG00000014998 HEATR6 (ENSMPUG00000015001) Canidae ANCESTRAL SPECIES 2 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Canis_lupus ANCESTRAL SPECIES 3 ENSGT01100000263482.F ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00980000203160 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Dog MODERN SPECIES 37 TMEM132E (ENSCAFG00845011068) ENSCAFG00845011012 CCT6B (ENSCAFG00845010909) ZNF830 (ENSCAFG00845010855) LIG3 (ENSCAFG00845010737) RFFL (ENSCAFG00845010579) FNDC8 (ENSCAFG00845010495) RFFL (ENSCAFG00845010302) UNC45B (ENSCAFG00845010061) ENSCAFG00845010008 ##20 ENSCAFG00845009985 ENSCAFG00845009945 SLFN14 (ENSCAFG00845009886) #20 ENSCAFG00845009840 PEX12 (ENSCAFG00845009799) #21 AP2B1 (ENSCAFG00845009662) #22 RASL10B (ENSCAFG00845009585) #23 GAS2L2 (ENSCAFG00845009497) C17orf50 (ENSCAFG00845009445) #25 MMP28 (ENSCAFG00845009411) #26 TAF15 (ENSCAFG00845009243) #27 HEATR9 (ENSCAFG00845009131) #28 CCL5 (ENSCAFG00845009083) #29 ENSCAFG00845009059 #30 ENSCAFG00845009033 #31 CCL23 (ENSCAFG00845009019) #32 ENSCAFG00845008998 ##37 CCL3 (ENSCAFG00845008966) ##37 CCL4 (ENSCAFG00845008857) ENSCAFG00845008789 ENSCAFG00845008744 Dingo MODERN SPECIES 150 ENSCAFG00020014164 ENSCAFG00020014162 CCT6B (ENSCAFG00020014065) ZNF830 (ENSCAFG00020014057) LIG3 (ENSCAFG00020014031) RFFL (ENSCAFG00020014028) ENSCAFG00020014019 FNDC8 (ENSCAFG00020014010) NLE1 (ENSCAFG00020014001) UNC45B (ENSCAFG00020013977) ENSCAFG00020013972 ##20 ENSCAFG00020013969 ENSCAFG00020013962 SLFN14 (ENSCAFG00020013927) #20 PEX12 (ENSCAFG00020013920) #21 AP2B1 (ENSCAFG00020004407) #22 RASL10B (ENSCAFG00020004082) #23 ENSCAFG00020004079 ENSCAFG00020004077 #24 C17orf50 (ENSCAFG00020004064) #25 MMP28 (ENSCAFG00020004053) #26 TAF15 (ENSCAFG00020004027) #27 HEATR9 (ENSCAFG00020003982) #28 ENSCAFG00020003980 #29 ENSCAFG00020003978 ##37 ENSCAFG00020003957 #37 ENSCAFG00020003951 ##37 ENSCAFG00020003948 ##37 ENSCAFG00020003943 ENSCAFG00020003940 ENSCAFG00020003906 Red fox MODERN SPECIES 20 CCL2 (ENSVVUG00000020543) ##37 CCL8 (ENSVVUG00000020542) ##37 ENSVVUG00000020541 ##37 CCL1 (ENSVVUG00000020540) ##37 TMEM132E (ENSVVUG00000020524) CCT6B (ENSVVUG00000020499) ZNF830 (ENSVVUG00000020495) LIG3 (ENSVVUG00000020483) RFFL (ENSVVUG00000020476) RAD51D (ENSVVUG00000020463) FNDC8 (ENSVVUG00000020460) NLE1 (ENSVVUG00000020437) UNC45B (ENSVVUG00000020428) SLFN14 (ENSVVUG00000020422) #20 PEX12 (ENSVVUG00000020416) #21 AP2B1 (ENSVVUG00000020403) #22 RASL10B (ENSVVUG00000020398) #23 GAS2L2 (ENSVVUG00000020397) ENSVVUG00000020395 #24 C17orf50 (ENSVVUG00000020393) #25 MMP28 (ENSVVUG00000020380) #26 TAF15 (ENSVVUG00000020375) #27 HEATR9 (ENSVVUG00000020369) #28 CCL5 (ENSVVUG00000020367) #29 ENSVVUG00000020365 #30 CCL14 (ENSVVUG00000020364) #31 ENSVVUG00000020363 #32 ENSVVUG00000020362 ##37 ENSVVUG00000020361 #37 ENSVVUG00000020359 ##37 ENSVVUG00000020356 Felidae ANCESTRAL SPECIES 8 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479.i ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 Panthera ANCESTRAL SPECIES 14 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479.i ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 Panthera_a ANCESTRAL SPECIES 13 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479.i ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879 ENSGT00520000060616 lion MODERN SPECIES 85 SLFN5 (ENSPLOG00000021889) ##20 ENSPLOG00000021864 #20 PEX12 (ENSPLOG00000021845) #21 AP2B1 (ENSPLOG00000021780) #22 RASL10B (ENSPLOG00000021750) #23 GAS2L2 (ENSPLOG00000021698) C17orf50 (ENSPLOG00000021666) #25 MMP28 (ENSPLOG00000021621) #26 TAF15 (ENSPLOG00000021569) #27 HEATR9 (ENSPLOG00000021497) #28 ENSPLOG00000021473 #29 CCL16 (ENSPLOG00000021453) #30 CCL14 (ENSPLOG00000021383) #31 ENSPLOG00000021366 ENSPLOG00000021352 #32 ENSPLOG00000021342 #37 ENSPLOG00000021333 ##37 ENSPLOG00000021237 ##37 ENSPLOG00000021222 leopard MODERN SPECIES 96 ENSPPRG00000009828 CCL8 (ENSPPRG00000009741) ##37 CCL13 (ENSPPRG00000009433) ##37 ENSPPRG00000008979 TMEM132E (ENSPPRG00000008656) CCT6B (ENSPPRG00000007926) ZNF830 (ENSPPRG00000017044) LIG3 (ENSPPRG00000005157) RFFL (ENSPPRG00000003045) RAD51D (ENSPPRG00000001417) FNDC8 (ENSPPRG00000000094) NLE1 (ENSPPRG00000022096) UNC45B (ENSPPRG00000014849) SLFN5 (ENSPPRG00000010973) ##20 PEX12 (ENSPPRG00000008251) #21 AP2B1 (ENSPPRG00000007979) #22 RASL10B (ENSPPRG00000006126) #23 ENSPPRG00000005858 #24 C17orf50 (ENSPPRG00000005525) #25 MMP28 (ENSPPRG00000004296) #26 TAF15 (ENSPPRG00000003286) #27 HEATR9 (ENSPPRG00000001679) #28 ENSPPRG00000022842 #29 CCL16 (ENSPPRG00000023127) #30 CCL14 (ENSPPRG00000023216) #31 ENSPPRG00000022503 #37 ENSPPRG00000020856 ##37 ENSPPRG00000019368 ##37 ENSPPRG00000017586 HEATR6 (ENSPPRG00000016046) HNF1B (ENSPPRG00000012674) Tiger MODERN SPECIES 518 ENSPTIG00000019894 CCL8 (ENSPTIG00000019874) ##37 CCL13 (ENSPTIG00000019853) ##37 ENSPTIG00000019795 TMEM132E (ENSPTIG00000019584) CCT6B (ENSPTIG00000019230) ZNF830 (ENSPTIG00000009775) LIG3 (ENSPTIG00000019055) RFFL (ENSPTIG00000018905) RAD51D (ENSPTIG00000018745) FNDC8 (ENSPTIG00000018278) NLE1 (ENSPTIG00000018083) UNC45B (ENSPTIG00000017835) SLFN5 (ENSPTIG00000017726) ##20 PEX12 (ENSPTIG00000017661) #21 AP2B1 (ENSPTIG00000017111) #22 RASL10B (ENSPTIG00000016870) #23 GAS2L2 (ENSPTIG00000016863) ENSPTIG00000016834 #24 MMP28 (ENSPTIG00000016715) #26 TAF15 (ENSPTIG00000016445) #27 HEATR9 (ENSPTIG00000016190) #28 ENSPTIG00000015882 #29 CCL16 (ENSPTIG00000015804) #30 CCL14 (ENSPTIG00000015670) #31 ENSPTIG00000015585 #37 ENSPTIG00000015557 ##37 ENSPTIG00000015300 ##37 ENSPTIG00000015144 HEATR6 (ENSPTIG00000014733) HNF1B (ENSPTIG00000014140) Cat MODERN SPECIES 245 CCL2 (ENSFCAG00000038488) ##37 CCL7 (ENSFCAG00000045217) ##37 CCL8 (ENSFCAG00000013594) ##37 CCL13 (ENSFCAG00000026454) ##37 ENSFCAG00000032743 TMEM132E (ENSFCAG00000022991) CCT6B (ENSFCAG00000022789) LIG3 (ENSFCAG00000000249) RFFL (ENSFCAG00000000250) RAD51D (ENSFCAG00000027426) FNDC8 (ENSFCAG00000000252) NLE1 (ENSFCAG00000000253) UNC45B (ENSFCAG00000000254) SLFN5 (ENSFCAG00000000255) ##20 PEX12 (ENSFCAG00000010389) #21 AP2B1 (ENSFCAG00000010390) #22 RASL10B (ENSFCAG00000032700) #23 GAS2L2 (ENSFCAG00000033656) CE1H17orf50 (ENSFCAG00000033141) #25 MMP28 (ENSFCAG00000010393) #26 TAF15 (ENSFCAG00000018167) #27 HEATR9 (ENSFCAG00000002003) #28 CCL5 (ENSFCAG00000001259) #29 CCL16 (ENSFCAG00000010005) #30 CCL14 (ENSFCAG00000018482) #31 ENSFCAG00000025629 ENSFCAG00000047484 ##37 ENSFCAG00000032130 #37 ENSFCAG00000033951 ##37 ENSFCAG00000039402 ##37 ENSFCAG00000053621 Artiodactyla ANCESTRAL SPECIES 4 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Artiodactyla_a ANCESTRAL SPECIES 3 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b ##22 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000155206.d #22 Cetacea ANCESTRAL SPECIES 5 ENSGT01030000234760 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01050000245362 #34 ENSGT00990000211580 Odontoceti ANCESTRAL SPECIES 17 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00990000211580 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 Odontoceti_a ANCESTRAL SPECIES 31 ENSGT01050000244976.b.b.b.a.a.a.a.b ENSGT00510000049558 ENSGT00940000160598.r ENSGT00390000016209.e #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000165089 Dolphin MODERN SPECIES 3362 ENSTTRG00000015663 ENSTTRG00000015665 #21 AP2B1 (ENSTTRG00000015666) #22 Odontoceti_b ANCESTRAL SPECIES 24 ENSGT00390000016209.e #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000165089 Vaquita MODERN SPECIES 12 NME1 (ENSPSNG00000021355) ENSPSNG00000021325 MBTD1 (ENSPSNG00000021287) UTP18 (ENSPSNG00000021239) ENSPSNG00000021217 ENSPSNG00000021206 ENSPSNG00000020878 ENSPSNG00000020758 ENSPSNG00000020693 ##37 ENSPSNG00000020657 ##37 ENSPSNG00000020639 ENSPSNG00000020619 ENSPSNG00000020551 ENSPSNG00000020497 ENSPSNG00000020484 #21 ENSPSNG00000020434 #22 RASL10B (ENSPSNG00000020374) #23 GAS2L2 (ENSPSNG00000020294) C17orf50 (ENSPSNG00000020251) #25 MMP28 (ENSPSNG00000020218) #26 TAF15 (ENSPSNG00000020196) #27 HEATR9 (ENSPSNG00000019966) #28 ENSPSNG00000019862 #29 ENSPSNG00000019836 CCL14 (ENSPSNG00000019802) #31 ENSPSNG00000019744 ##37 ENSPSNG00000019708 ##37 ENSPSNG00000019631 ENSPSNG00000019594 ENSPSNG00000019574 HEATR6 (ENSPSNG00000019450) Monodontidae ANCESTRAL SPECIES 29 ENSGT00390000003855.b.d ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT00940000165089 ENSGT01100000266523 Narwhal MODERN SPECIES 316 ANKRD40 (ENSMMNG00015020484) LUC7L3 (ENSMMNG00015020441) ENSMMNG00015020406 WFIKKN2 (ENSMMNG00015020389) TOB1 (ENSMMNG00015020379) SPAG9 (ENSMMNG00015020158) ENSMMNG00015020040 ENSMMNG00015020026 NME1 (ENSMMNG00015019993) MBTD1 (ENSMMNG00015019943) UTP18 (ENSMMNG00015019839) ENSMMNG00015019539 ENSMMNG00015019311 ##37 ENSMMNG00015019174 ENSMMNG00015019123 AP2B1 (ENSMMNG00015018876) #22 RASL10B (ENSMMNG00015018782) #23 GAS2L2 (ENSMMNG00015018720) C17orf50 (ENSMMNG00015018683) #25 MMP28 (ENSMMNG00015018658) #26 TAF15 (ENSMMNG00015018630) #27 HEATR9 (ENSMMNG00015018520) #28 ENSMMNG00015018499 #29 CCL16 (ENSMMNG00015018475) #30 CCL14 (ENSMMNG00015018458) #31 ENSMMNG00015018444 ##37 ENSMMNG00015018427 HEATR6 (ENSMMNG00015018324) HNF1B (ENSMMNG00015018254) ENSMMNG00015018218 DDX52 (ENSMMNG00015018180) Sperm whale MODERN SPECIES 5 CCL1 (ENSPCTG00005012728) TMEM132E (ENSPCTG00005012754) ENSPCTG00005012970 ENSPCTG00005013032 ENSPCTG00005013042 LIG3 (ENSPCTG00005013330) RFFL (ENSPCTG00005013449) ENSPCTG00005013530 ENSPCTG00005013587 ENSPCTG00005013754 SLFN12 (ENSPCTG00005013784) #18 SLFN11 (ENSPCTG00005013804) #19 SLFN14 (ENSPCTG00005013867) #20 ENSPCTG00005013925 PEX12 (ENSPCTG00005013981) #21 AP2B1 (ENSPCTG00005014049) #22 RASL10B (ENSPCTG00005014172) #23 GAS2L2 (ENSPCTG00005014226) ENSPCTG00005014431 #24 C17orf50 (ENSPCTG00005014470) #25 MMP28 (ENSPCTG00005014601) #26 TAF15 (ENSPCTG00005014729) #27 HEATR9 (ENSPCTG00005014946) #28 CCL5 (ENSPCTG00005015361) #29 CCL16 (ENSPCTG00005015413) #30 CCL14 (ENSPCTG00005015445) #31 ENSPCTG00005015545 ENSPCTG00005015628 #37 ENSPCTG00005015800 ##37 ENSPCTG00005015862 ENSPCTG00005016070 Blue whale MODERN SPECIES 12 CCL1 (ENSBMSG00010015132) ##37 TMEM132E (ENSBMSG00010015019) ENSBMSG00010014985 ZNF830 (ENSBMSG00010014976) LIG3 (ENSBMSG00010014942) RFFL (ENSBMSG00010014852) RAD51D (ENSBMSG00010014782) FNDC8 (ENSBMSG00010014750) NLE1 (ENSBMSG00010014584) UNC45B (ENSBMSG00010014269) ENSBMSG00010014205 #18 ENSBMSG00010014181 #19 SLFN14 (ENSBMSG00010014153) #20 PEX12 (ENSBMSG00010014124) #21 ENSBMSG00010014086 AP2B1 (ENSBMSG00010014021) #22 RASL10B (ENSBMSG00010013977) #23 GAS2L2 (ENSBMSG00010013934) C17orf50 (ENSBMSG00010013900) #25 MMP28 (ENSBMSG00010013863) #26 TAF15 (ENSBMSG00010013832) #27 HEATR9 (ENSBMSG00010013798) #28 ENSBMSG00010021647 #29 ENSBMSG00010021643 CCL16 (ENSBMSG00010021638) #30 CCL14 (ENSBMSG00010021633) #31 ENSBMSG00010021627 ENSBMSG00010021624 ##37 ENSBMSG00010021620 #34 ENSBMSG00010021619 ##37 ENSBMSG00010021612 Camelidae ANCESTRAL SPECIES 66 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01050000245362 #34 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a ##37 ENSGT00940000165089 ENSGT00530000064879.a.b ENSGT00940000168945 Arabian camel MODERN SPECIES 7 CTNS (ENSCDRG00005014378) SHPK (ENSCDRG00005014332) TRPV1 (ENSCDRG00005013770) TRPV3 (ENSCDRG00005013190) ENSCDRG00005013140 ENSCDRG00005013098 OR1P1 (ENSCDRG00005013048) ENSCDRG00005013036 ENSCDRG00005013012 ENSCDRG00005012958 SPATA22 (ENSCDRG00005012628) ENSCDRG00005012592 ENSCDRG00005012545 #19 SLFN14 (ENSCDRG00005012497) #20 PEX12 (ENSCDRG00005012460) #21 AP2B1 (ENSCDRG00005012171) #22 RASL10B (ENSCDRG00005012132) #23 GAS2L2 (ENSCDRG00005012002) MMP28 (ENSCDRG00005011722) #26 TAF15 (ENSCDRG00005011616) #27 HEATR9 (ENSCDRG00005011390) #28 ENSCDRG00005011357 #29 CCL16 (ENSCDRG00005011301) #30 CCL14 (ENSCDRG00005011268) #31 ENSCDRG00005011237 ##37 ENSCDRG00005011190 #34 ENSCDRG00005011149 #37 ENSCDRG00005011025 ENSCDRG00005010997 ENSCDRG00005010366 ENSCDRG00005010283 Alpaca MODERN SPECIES 1445 AP2B1 (ENSVPAG00000005106) #22 Suina ANCESTRAL SPECIES ENSGT01100000263482.A.a.a.d.a.a.b ##37 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00990000211580 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT00940000165089 ENSGT00940000166945 Chacoan peccary MODERN SPECIES 144 CCL11 (ENSCWAG00000015240) ##37 CCL8 (ENSCWAG00000015268) ##37 ENSCWAG00000015299 TMEM132E (ENSCWAG00000015350) CCT6B (ENSCWAG00000015565) ZNF830 (ENSCWAG00000015919) LIG3 (ENSCWAG00000015948) RFFL (ENSCWAG00000016017) RAD51D (ENSCWAG00000016105) FNDC8 (ENSCWAG00000016272) NLE1 (ENSCWAG00000006273) UNC45B (ENSCWAG00000006444) ENSCWAG00000006739 #19 SLFN14 (ENSCWAG00000006953) #20 PEX12 (ENSCWAG00000007111) #21 AP2B1 (ENSCWAG00000007160) #22 RASL10B (ENSCWAG00000007260) #23 GAS2L2 (ENSCWAG00000007285) C17orf50 (ENSCWAG00000007362) #25 MMP28 (ENSCWAG00000007423) #26 TAF15 (ENSCWAG00000007501) #27 HEATR9 (ENSCWAG00000007560) #28 ENSCWAG00000007687 #29 ENSCWAG00000007710 #31 ENSCWAG00000007741 ENSCWAG00000007820 #37 ENSCWAG00000007883 ##37 ENSCWAG00000007931 ENSCWAG00000008047 ENSCWAG00000008066 HEATR6 (ENSCWAG00000008120) Pig MODERN SPECIES 3 CCL11 (ENSSSCG00000044762) ##37 CCL8 (ENSSSCG00000040648) ##37 CCL1 (ENSSSCG00000017720) TMEM132E (ENSSSCG00000022987) CCT6B (ENSSSCG00000022196) ZNF830 (ENSSSCG00000056119) LIG3 (ENSSSCG00000024770) RFFL (ENSSSCG00000032552) RAD51D (ENSSSCG00000061966) FNDC8 (ENSSSCG00000021617) NLE1 (ENSSSCG00000025796) UNC45B (ENSSSCG00000017717) ENSSSCG00000032652 #19 SLFN14 (ENSSSCG00000031114) #20 PEX12 (ENSSSCG00000017713) #21 AP2B1 (ENSSSCG00000017712) #22 RASL10B (ENSSSCG00000036746) #23 GAS2L2 (ENSSSCG00000039395) MMP28 (ENSSSCG00000034440) #26 TAF15 (ENSSSCG00000017707) #27 HEATR9 (ENSSSCG00000017706) #28 CCL5 (ENSSSCG00000017705) #29 CCL16 (ENSSSCG00000040940) #30 CCL14 (ENSSSCG00000034722) #31 ENSSSCG00000033457 #32 ENSSSCG00000041204 ENSSSCG00000047189 #37 CCL3L1 (ENSSSCG00000017700) ##37 CCL4 (ENSSSCG00000032343) ENSSSCG00000039685 ENSSSCG00000031292 Boreoeutheria DUPLICATION Boreoeutheria ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Euarchontoglires ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Glires ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Rodentia ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Rodentia_A ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Hystricomorpha ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Naked mole-rat female MODERN SPECIES 22 ACVR1C (ENSHGLG00000007777) CYTIP (ENSHGLG00000049755) ERMN (ENSHGLG00000044020) GALNT5 (ENSHGLG00000040944) ENSHGLG00000025302 ENSHGLG00000035939 ENSHGLG00000004553 ENSHGLG00000004699 ENSHGLG00000005496 ENSHGLG00000032785 ENSHGLG00000043622 ENSHGLG00000048169 ENSHGLG00000041709 GALNT13 (ENSHGLG00000008663) RPRM (ENSHGLG00000020667) ENSHGLG00000034456 ##22 ENSHGLG00000041977 ENSHGLG00000041758 ARL6IP6 (ENSHGLG00000047268) ENSHGLG00000036357 ENSHGLG00000047580 ENSHGLG00000037717 ENSHGLG00000049887 ENSHGLG00000005180 ENSHGLG00000014840 ENSHGLG00000015684 FAM168B (ENSHGLG00000049252) ENSHGLG00000032060 ENSHGLG00000012881 AMER3 (ENSHGLG00000034065) ENSHGLG00000046018 Sciuridae ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Eurasian red squirrel MODERN SPECIES 13 RFXAP (ENSSVLG00005009115) ENSSVLG00005009129 SERTM1 (ENSSVLG00005009166) CCNA1 (ENSSVLG00005009186) SPART (ENSSVLG00005009224) CCDC169 (ENSSVLG00005009253) SOHLH2 (ENSSVLG00005009335) DCLK1 (ENSSVLG00005009476) NBEA (ENSSVLG00005010027) MAB21L1 (ENSSVLG00005012010) ENSSVLG00005012035 ENSSVLG00005012094 STARD13 (ENSSVLG00005012412) KL (ENSSVLG00005012761) ENSSVLG00005012836 ENSSVLG00005012874 ##22 PDS5B (ENSSVLG00005012920) ENSSVLG00005013108 N4BP2L1 (ENSSVLG00005013256) BRCA2 (ENSSVLG00005015076) ZAR1L (ENSSVLG00005019599) FRY (ENSSVLG00005019945) ENSSVLG00005020793 RXFP2 (ENSSVLG00005020815) B3GLCT (ENSSVLG00005021156) HSPH1 (ENSSVLG00005021367) ENSSVLG00005021904 TEX26 (ENSSVLG00005022083) MEDAG (ENSSVLG00005022152) ALOX5AP (ENSSVLG00005022177) USPL1 (ENSSVLG00005022232) Laurasiatheria ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Chiroptera ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Microchiroptera ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Microbat MODERN SPECIES 1004 ENSMLUG00000028467 ENSMLUG00000029987 ENSMLUG00000022381 ENSMLUG00000029258 ENSMLUG00000024617 ALCAM (ENSMLUG00000007645) CBLB (ENSMLUG00000002004) ENSMLUG00000025183 ENSMLUG00000027517 CCDC54 (ENSMLUG00000028896) ENSMLUG00000025105 ##22 BBX (ENSMLUG00000007351) ENSMLUG00000026897 ENSMLUG00000022406 CD47 (ENSMLUG00000010929) IFT57 (ENSMLUG00000010962) MYH15 (ENSMLUG00000004102) CIP2A (ENSMLUG00000003352) DZIP3 (ENSMLUG00000003356) RETNLB (ENSMLUG00000001459) ENSMLUG00000001461 ENSMLUG00000026283 GUCA1C (ENSMLUG00000009043) MORC1 (ENSMLUG00000009058) Carnivora ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Caniformia ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Caniformia_b ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Mustelinae ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 American mink MODERN SPECIES 289 RAPGEF2 (ENSNVIG00000011224) C4orf45 (ENSNVIG00000011329) FNIP2 (ENSNVIG00000011354) ENSNVIG00000011431 ETFDH (ENSNVIG00000011451) C4orf46 (ENSNVIG00000011495) RXFP1 (ENSNVIG00000011519) ENSNVIG00000011688 ##22 TM144 (ENSNVIG00000011698) ENSNVIG00000011732 GASK1B (ENSNVIG00000011753) Ursidae ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Ursus ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 American black bear MODERN SPECIES 7089 ENSUAMG00000024164 ##22 EBNA1BP2 (ENSUAMG00000024165) Artiodactyla ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Artiodactyla_a ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Artiodactyla_b ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Cetacea ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Odontoceti ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Odontoceti_a ANCESTRAL SPECIES 18 ENSGT01030000234760 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209.f #21 ENSGT00940000155206.c.a ##22 Odontoceti_b ANCESTRAL SPECIES 20 ENSGT01030000234760 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT01010000228931 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209.f #21 ENSGT00940000155206.c.a ##22 Vaquita MODERN SPECIES 12 ZNF830 (ENSPSNG00000011195) LIG3 (ENSPSNG00000011102) RFFL (ENSPSNG00000010922) RAD51D (ENSPSNG00000010752) FNDC8 (ENSPSNG00000010677) NLE1 (ENSPSNG00000010570) UNC45B (ENSPSNG00000010204) ENSPSNG00000010100 #18 ENSPSNG00000010053 #18 SLFN14 (ENSPSNG00000009991) #20 ENSPSNG00000009938 #21 ENSPSNG00000009891 ENSPSNG00000009744 ENSPSNG00000009692 ENSPSNG00000009606 #21 ENSPSNG00000009585 ##22 ENSPSNG00000022370 ENSPSNG00000022368 ##37 ENSPSNG00000022365 ##37 ENSPSNG00000022355 CCL2 (ENSPSNG00000022350) ##37 ASIC2 (ENSPSNG00000022343) SPACA3 (ENSPSNG00000022329) TMEM98 (ENSPSNG00000022321) MYO1D (ENSPSNG00000022301) PSMD11 (ENSPSNG00000022276) ZNF207 (ENSPSNG00000022235) C17orf75 (ENSPSNG00000022179) RHBDL3 (ENSPSNG00000022156) RHOT1 (ENSPSNG00000022092) ADAP2 (ENSPSNG00000022035) Pecora ANCESTRAL SPECIES ENSGT00940000155206.c.a ##22 Percora_a ANCESTRAL SPECIES 21 ENSGT00880000138028.b.b ENSGT00940000155695 ENSGT00900000143654 ENSGT00390000004766 ENSGT00940000154798.a.d.a ENSGT00530000063426.b.b ENSGT00390000002563.b.a.a ENSGT00390000002563.a ENSGT01010000228077 ENSGT00940000153295.b ENSGT00940000155839 ENSGT01030000236423 ENSGT00940000155610 ENSGT00940000155377 ENSGT00940000156143 ENSGT00940000155206.c.a ##22 ENSGT00940000154272.A ENSGT00940000160200 ENSGT00940000154550.a.e.b.b ENSGT00940000155625 ENSGT00940000164601 ENSGT00940000157719 ENSGT00730000111138 ENSGT00390000007284 ENSGT00950000182919.A ENSGT00940000155184 ENSGT00940000162208 ENSGT00390000011769 ENSGT00940000157179 ENSGT00390000001627.a ENSGT00950000183001.a.b.a Siberian musk deer MODERN SPECIES 57 RTN4IP1 (ENSMMSG00000009752) CRYBG1 (ENSMMSG00000009812) ATG5 (ENSMMSG00000009989) PRDM1 (ENSMMSG00000010156) PREP (ENSMMSG00000010324) POPDC3 (ENSMMSG00000010364) BVES (ENSMMSG00000010405) ENSMMSG00000010511 LIN28B (ENSMMSG00000010589) HACE1 (ENSMMSG00000010633) ENSMMSG00000010683 ENSMMSG00000010701 GRIK2 (ENSMMSG00000010751) ASCC3 (ENSMMSG00000011234) SIM1 (ENSMMSG00000011342) ENSMMSG00000011367 ##22 MCHR2 (ENSMMSG00000011392) PRDM13 (ENSMMSG00000011437) ENSMMSG00000011452 ENSMMSG00000011528 ENSMMSG00000012283 ENSMMSG00000012312 PNISR (ENSMMSG00000012362) COQ3 (ENSMMSG00000012403) FAXC (ENSMMSG00000012455) FBXL4 (ENSMMSG00000012478) POU3F2 (ENSMMSG00000012495) ENSMMSG00000012510 MMS22L (ENSMMSG00000012530) KLHL32 (ENSMMSG00000012591) ENSMMSG00000013052 Bovidae ANCESTRAL SPECIES 21 ENSGT00880000138028.b.b ENSGT00940000155695 ENSGT00900000143654 ENSGT00390000004766 ENSGT00940000154798.a.d.a ENSGT00530000063426.b.b ENSGT00390000002563.b.a.a ENSGT00390000002563.a ENSGT01010000228077 ENSGT00940000153295.b ENSGT00940000155839 ENSGT01030000236423 ENSGT00940000155610 ENSGT00940000155377 ENSGT00940000156143 ENSGT00940000155206.c.a ##22 ENSGT00940000154272.A ENSGT00940000160200 ENSGT00940000154550.a.e.b.b ENSGT00940000155625 ENSGT00940000164932 ENSGT00940000164601 ENSGT00940000157719 ENSGT00730000111138 ENSGT00390000007284 ENSGT00950000182919.A ENSGT00940000155184 ENSGT00940000162208 ENSGT00390000011769 ENSGT00940000157179 ENSGT00390000001627.a Caprinae ANCESTRAL SPECIES 33 ENSGT00550000074866.c ENSGT00880000138028.b.b ENSGT00940000155695 ENSGT00900000143654 ENSGT00390000004766 ENSGT00940000154798.a.d.a ENSGT00530000063426.b.b ENSGT00390000002563.b.a.a ENSGT00390000002563.a ENSGT01010000228077 ENSGT00940000153295.b ENSGT00940000155839 ENSGT00940000155610 ENSGT00940000155377 ENSGT00940000156143 ENSGT00940000155206.c.a ##22 ENSGT00940000154272.A ENSGT00940000160200 ENSGT00940000154550.a.e.b.b ENSGT00940000155625.c ENSGT00940000164932 ENSGT00940000164601 ENSGT00940000157719 ENSGT00730000111138 ENSGT00390000007284 ENSGT00950000182919.A ENSGT00940000155184 ENSGT00940000162208 ENSGT00390000011769 ENSGT00940000157179 ENSGT00390000001627.a Goat MODERN SPECIES 28 ATG5 (ENSCHIG00000019684) PRDM1 (ENSCHIG00000023368) PREP (ENSCHIG00000019257) POPDC3 (ENSCHIG00000016800) BVES (ENSCHIG00000008491) LIN28B (ENSCHIG00000011133) ENSCHIG00000015439 HACE1 (ENSCHIG00000025754) ENSCHIG00000025858 ENSCHIG00000009503 ENSCHIG00000018302 ENSCHIG00000015656 GRIK2 (ENSCHIG00000021980) ASCC3 (ENSCHIG00000023605) SIM1 (ENSCHIG00000010900) ENSCHIG00000009763 ##22 MCHR2 (ENSCHIG00000014417) PRDM13 (ENSCHIG00000006628) ENSCHIG00000020922 ENSCHIG00000016858 ENSCHIG00000013830 USP45 (ENSCHIG00000013909) PNISR (ENSCHIG00000017747) COQ3 (ENSCHIG00000011202) ENSCHIG00000010184 FBXL4 (ENSCHIG00000016349) POU3F2 (ENSCHIG00000008214) MMS22L (ENSCHIG00000019370) KLHL32 (ENSCHIG00000011484) ENSCHIG00000019756 GPR63 (ENSCHIG00000007995) Rambouillet Sheep MODERN SPECIES 24 POPDC3 (ENSOARG00020014545) BVES (ENSOARG00020014598) ENSOARG00020014675 LIN28B (ENSOARG00020003103) HACE1 (ENSOARG00020003313) ENSOARG00020004367 ENSOARG00020004377 ENSOARG00020004386 ENSOARG00020004427 ENSOARG00020004455 ENSOARG00020004479 ENSOARG00020004536 GRIK2 (ENSOARG00020004644) ASCC3 (ENSOARG00020006093) SIM1 (ENSOARG00020006280) ENSOARG00020006360 ##22 MCHR2 (ENSOARG00020006398) PRDM13 (ENSOARG00020006456) ENSOARG00020006550 CCNC (ENSOARG00020006653) TSTD3 (ENSOARG00020006801) USP45 (ENSOARG00020006844) PNISR (ENSOARG00020007109) COQ3 (ENSOARG00020007243) FAXC (ENSOARG00020007328) FBXL4 (ENSOARG00020007441) POU3F2 (ENSOARG00020007533) MMS22L (ENSOARG00020007563) KLHL32 (ENSOARG00020007827) ENSOARG00020008188 GPR63 (ENSOARG00020008232) Bovinae ANCESTRAL SPECIES 31 ENSGT00950000186448 ENSGT00960000190646 ENSGT00390000004766 ENSGT00940000154798.a.d.a ENSGT00390000004856.w.a.a.b.b.a.b.a ENSGT00530000063426.b.b ENSGT00390000002563.b.a.a ENSGT00390000002563.a ENSGT00940000153295.b ENSGT00940000155839 ENSGT01030000236423 ENSGT00940000155610 ENSGT00940000155377 ENSGT00940000156143 ENSGT00510000046985.h.b.a.a.b ENSGT00940000155206.c.a ##22 ENSGT00940000154272.A ENSGT00940000160200 ENSGT00940000154550.a.e.b.b ENSGT00940000155625 ENSGT00940000164932 ENSGT00940000157719 ENSGT00730000111138 ENSGT00390000007284 ENSGT00950000182919.A ENSGT00940000155184 ENSGT00940000162208 ENSGT00390000011769 ENSGT00940000157179 ENSGT00390000001627.a ENSGT00950000183001.a.b.a American bison MODERN SPECIES 2973 ASCC3 (ENSBBBG00000019537) SIM1 (ENSBBBG00000019562) ENSBBBG00000005306 ENSBBBG00000005309 ##22 MCHR2 (ENSBBBG00000005313) ENSBBBG00000019599 PRDM13 (ENSBBBG00000019612) ENSBBBG00000007045 ENSBBBG00000019737 TSTD3 (ENSBBBG00000008950) USP45 (ENSBBBG00000007013) PNISR (ENSBBBG00000019913) COQ3 (ENSBBBG00000005393) FAXC (ENSBBBG00000019944) FBXL4 (ENSBBBG00000019956) ENSBBBG00000005119 ENSBBBG00000019962 MMS22L (ENSBBBG00000020025) KLHL32 (ENSBBBG00000005436) Boreoeutheria ANCESTRAL SPECIES ENSGT00940000155206.c.b ##22 Laurasiatheria ANCESTRAL SPECIES ENSGT00940000155206.c.b ##22 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00940000155206.c.b ##22 Artiodactyla ANCESTRAL SPECIES ENSGT00940000155206.c.b ##22 Artiodactyla_a ANCESTRAL SPECIES 3 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b ##22 ENSGT00940000155206.d #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.b.a.b #37 Artiodactyla_b ANCESTRAL SPECIES 3 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 Pecora DUPLICATION Pecora ANCESTRAL SPECIES 1 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Yarkand deer MODERN SPECIES 28 CCL2 (ENSCHYG00000004987) ##37 CCL11 (ENSCHYG00000004959) ##37 ENSCHYG00000004663 ##37 ENSCHYG00000004652 TMEM132E (ENSCHYG00000004615) CCT6B (ENSCHYG00000004528) ZNF830 (ENSCHYG00000004488) LIG3 (ENSCHYG00000004420) ENSCHYG00000004295 FNDC8 (ENSCHYG00000004217) NLE1 (ENSCHYG00000004131) UNC45B (ENSCHYG00000004023) ENSCHYG00000003986 #18 SLFN14 (ENSCHYG00000003977) #20 PEX12 (ENSCHYG00000003961) #21 ENSCHYG00000003898 ##22 RASL10B (ENSCHYG00000003865) #23 GAS2L2 (ENSCHYG00000003847) C17orf50 (ENSCHYG00000003832) #25 MMP28 (ENSCHYG00000003809) #26 TAF15 (ENSCHYG00000003703) #27 HEATR9 (ENSCHYG00000003637) #28 ENSCHYG00000003613 #29 CCL16 (ENSCHYG00000003598) #30 CCL14 (ENSCHYG00000003585) #31 ENSCHYG00000003559 ENSCHYG00000003542 ##37 ENSCHYG00000003533 #37 ENSCHYG00000003522 ##37 ENSCHYG00000003511 ##37 ENSCHYG00000003496 Percora_a ANCESTRAL SPECIES 2 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095.c.a ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Bovidae ANCESTRAL SPECIES 2 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095.c.a ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Bovinae ANCESTRAL SPECIES ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095.c.a ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Bos ANCESTRAL SPECIES 1 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095.c.a ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b.n #37 ENSGT00990000211580 Bos_a ANCESTRAL SPECIES ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095.c.a ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT00390000004871.a ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b.m.a #37 Wild yak MODERN SPECIES 1117 ENSBMUG00000013512 ##37 CCL1 (ENSBMUG00000013488) ##37 TMEM132E (ENSBMUG00000013479) CCT6B (ENSBMUG00000013437) ZNF830 (ENSBMUG00000013328) LIG3 (ENSBMUG00000013309) RFFL (ENSBMUG00000013239) RAD51D (ENSBMUG00000013181) FNDC8 (ENSBMUG00000013103) NLE1 (ENSBMUG00000013085) UNC45B (ENSBMUG00000013040) ENSBMUG00000012916 #18 ENSBMUG00000012900 #19 SLFN14 (ENSBMUG00000012865) #20 PEX12 (ENSBMUG00000012839) #21 ENSBMUG00000012814 ##22 RASL10B (ENSBMUG00000012740) #23 ENSBMUG00000012734 ENSBMUG00000012720 #24 C17orf50 (ENSBMUG00000012713) #25 ENSBMUG00000012696 MMP28 (ENSBMUG00000012687) #26 TAF15 (ENSBMUG00000012646) #27 HEATR9 (ENSBMUG00000012616) #28 ENSBMUG00000012590 #29 ENSBMUG00000012580 CCL16 (ENSBMUG00000012569) #30 CCL14 (ENSBMUG00000012564) #31 ENSBMUG00000012558 ENSBMUG00000012547 ##37 ENSBMUG00000012533 ##37 Domestic yak MODERN SPECIES 10 ENSBGRG00000020373 ##37 ENSBGRG00000020420 TMEM132E (ENSBGRG00000020451) CCT6B (ENSBGRG00000020692) ZNF830 (ENSBGRG00000021136) LIG3 (ENSBGRG00000021180) RFFL (ENSBGRG00000021399) ENSBGRG00000021490 FNDC8 (ENSBGRG00000021652) NLE1 (ENSBGRG00000021708) UNC45B (ENSBGRG00000022051) ENSBGRG00000022720 #18 ENSBGRG00000022760 #19 SLFN14 (ENSBGRG00000022772) #20 PEX12 (ENSBGRG00000022808) #21 ENSBGRG00000022860 ##22 RASL10B (ENSBGRG00000023043) #23 GAS2L2 (ENSBGRG00000023089) C17orf50 (ENSBGRG00000023233) #25 MMP28 (ENSBGRG00000023311) #26 ENSBGRG00000023398 HEATR9 (ENSBGRG00000023535) #28 ENSBGRG00000023713 #29 ENSBGRG00000023731 CCL16 (ENSBGRG00000023749) #30 CCL14 (ENSBGRG00000023792) #31 ENSBGRG00000023865 ##37 ENSBGRG00000023893 ENSBGRG00000024021 #37 ENSBGRG00000010840 ##37 ENSBGRG00000010946 ##37 Bos_b ANCESTRAL SPECIES 38 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095.c.a ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.b #18 ENSGT01100000263480.a.b.a.b.b.b.b.a.a ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT00940000165476 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.b.a.b.m.b #37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b.n #37 ENSGT01100000263482.C.c.b.b.a.a ##37 Cow MODERN SPECIES 10 CCL1 (ENSBTAG00000008832) TMEM132E (ENSBTAG00000002680) CCT6B (ENSBTAG00000020338) ZNF830 (ENSBTAG00000020340) LIG3 (ENSBTAG00000018689) RFFL (ENSBTAG00000013645) RAD51D (ENSBTAG00000019082) FNDC8 (ENSBTAG00000019092) NLE1 (ENSBTAG00000019094) UNC45B (ENSBTAG00000002898) ENSBTAG00000025219 #18 ENSBTAG00000051396 ENSBTAG00000019437 #19 SLFN14 (ENSBTAG00000039206) #20 PEX12 (ENSBTAG00000019723) #21 AP2B1 (ENSBTAG00000020316) ##22 RASL10B (ENSBTAG00000018518) #23 GAS2L2 (ENSBTAG00000018519) C19H17orf50 (ENSBTAG00000045621) #25 MMP28 (ENSBTAG00000006086) #26 TAF15 (ENSBTAG00000006916) HEATR9 (ENSBTAG00000002850) #28 CCL5 (ENSBTAG00000053649) #29 CCL16 (ENSBTAG00000053578) #30 CCL14 (ENSBTAG00000010738) #31 ENSBTAG00000048980 ENSBTAG00000010155 ##37 ENSBTAG00000048626 ##37 ENSBTAG00000003289 #37 ENSBTAG00000051377 CCL4 (ENSBTAG00000025257) ##37 Hybrid Bos Indicus MODERN SPECIES 10 ENSBIXG00005003275 TMEM132E (ENSBIXG00005003295) CCT6B (ENSBIXG00005020356) ZNF830 (ENSBIXG00005000019) LIG3 (ENSBIXG00005020425) RFFL (ENSBIXG00005020511) RAD51D (ENSBIXG00005007727) FNDC8 (ENSBIXG00005020624) NLE1 (ENSBIXG00005020696) UNC45B (ENSBIXG00005020949) ENSBIXG00005003547 #18 ENSBIXG00005021013 ENSBIXG00005021034 #19 SLFN14 (ENSBIXG00005021050) #20 PEX12 (ENSBIXG00005021083) #21 ENSBIXG00005021182 ##22 RASL10B (ENSBIXG00005021225) #23 GAS2L2 (ENSBIXG00005021333) C17orf50 (ENSBIXG00005007305) #25 MMP28 (ENSBIXG00005021408) #26 TAF15 (ENSBIXG00005021454) #27 HEATR9 (ENSBIXG00005007371) #28 ENSBIXG00005021593 #29 CCL16 (ENSBIXG00005021613) #30 ENSBIXG00005021642 #31 ENSBIXG00005003651 ENSBIXG00005021684 ##37 ENSBIXG00005021705 #37 ENSBIXG00005021738 ##37 ENSBIXG00005021752 ENSBIXG00005021800 ##37 American bison MODERN SPECIES 3331 CCL11 (ENSBBBG00000015529) ##37 ENSBBBG00000015515 ##37 TMEM132E (ENSBBBG00000003856) CCT6B (ENSBBBG00000015432) ZNF830 (ENSBBBG00000003814) LIG3 (ENSBBBG00000003485) RFFL (ENSBBBG00000001330) RAD51D (ENSBBBG00000015308) FNDC8 (ENSBBBG00000015233) NLE1 (ENSBBBG00000003521) UNC45B (ENSBBBG00000003753) ENSBBBG00000000800 #18 ENSBBBG00000015007 #19 SLFN14 (ENSBBBG00000003718) #20 PEX12 (ENSBBBG00000014984) #21 ENSBBBG00000014960 ##22 RASL10B (ENSBBBG00000000919) #23 GAS2L2 (ENSBBBG00000000929) MMP28 (ENSBBBG00000000966) #26 TAF15 (ENSBBBG00000000998) #27 HEATR9 (ENSBBBG00000001077) #28 ENSBBBG00000001120 #29 CCL16 (ENSBBBG00000001142) #30 CCL14 (ENSBBBG00000001153) #31 ENSBBBG00000001168 ENSBBBG00000001180 ##37 ENSBBBG00000001231 ##37 ENSBBBG00000003679 ##37 ENSBBBG00000014876 ENSBBBG00000014865 ENSBBBG00000003664 Caprinae ANCESTRAL SPECIES 1 ENSGT01100000263482.A.a.a.d.a.a.b ##37 ENSGT01100000263482.A.a.a.d.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095.c.a ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206.c.b.a ##22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.B #30 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.a.b ##37 ENSGT01100000263482.C.c.b.a.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b.k #37 ENSGT01100000263482.C.c.b.b.a.a ##37 ENSGT01100000263482.C.c.a ##37 ENSGT00530000064879.a.a.a Goat MODERN SPECIES 10 CCL11 (ENSCHIG00000012968) ##37 CCL8 (ENSCHIG00000020074) ##37 ENSCHIG00000002408 TMEM132E (ENSCHIG00000015468) CCT6B (ENSCHIG00000023739) ZNF830 (ENSCHIG00000012740) LIG3 (ENSCHIG00000023884) RFFL (ENSCHIG00000012667) ENSCHIG00000019605 FNDC8 (ENSCHIG00000027164) NLE1 (ENSCHIG00000012536) UNC45B (ENSCHIG00000018294) ENSCHIG00000026701 #19 SLFN14 (ENSCHIG00000026874) #20 PEX12 (ENSCHIG00000025650) #21 ENSCHIG00000019283 ##22 RASL10B (ENSCHIG00000018183) #23 GAS2L2 (ENSCHIG00000026688) C17orf50 (ENSCHIG00000018412) #25 MMP28 (ENSCHIG00000027070) #26 ENSCHIG00000027235 #27 HEATR9 (ENSCHIG00000021394) #28 ENSCHIG00000016688 #29 ENSCHIG00000004359 CCL14 (ENSCHIG00000015200) #31 ENSCHIG00000021417 ##37 ENSCHIG00000003747 #37 ENSCHIG00000017081 ##37 ENSCHIG00000026450 ##37 ENSCHIG00000014748 #37 ENSCHIG00000017931 Rambouillet Sheep MODERN SPECIES 2 CCL1 (ENSOARG00020017691) ##37 TMEM132E (ENSOARG00020017730) CCT6B (ENSOARG00020018028) ZNF830 (ENSOARG00020018540) LIG3 (ENSOARG00020018561) RFFL (ENSOARG00020018710) ENSOARG00020018814 FNDC8 (ENSOARG00020018903) ENSOARG00020018949 ENSOARG00020018986 UNC45B (ENSOARG00020019061) ENSOARG00020019677 ENSOARG00020019723 #18 SLFN14 (ENSOARG00020019977) #20 PEX12 (ENSOARG00020020025) #21 AP2B1 (ENSOARG00020020066) ##22 ENSOARG00020020386 RASL10B (ENSOARG00020020400) #23 C17orf50 (ENSOARG00020020706) #25 MMP28 (ENSOARG00020020795) #26 TAF15 (ENSOARG00020020914) #27 HEATR9 (ENSOARG00020021381) #28 ENSOARG00020021566 #29 CCL16 (ENSOARG00020021594) #30 CCL14 (ENSOARG00020021620) #31 ENSOARG00020021658 ##37 ENSOARG00020021698 ##37 ENSOARG00020021729 #37 ENSOARG00020021765 ##37 ENSOARG00020021814 ##37 ENSOARG00020021888 Siberian musk deer MODERN SPECIES 1135 CCL1 (ENSMMSG00000013764) ##37 ENSMMSG00000013748 TMEM132E (ENSMMSG00000013674) CCT6B (ENSMMSG00000013474) ZNF830 (ENSMMSG00000013439) LIG3 (ENSMMSG00000013344) RFFL (ENSMMSG00000013303) ENSMMSG00000013244 FNDC8 (ENSMMSG00000013206) NLE1 (ENSMMSG00000013105) UNC45B (ENSMMSG00000012816) ENSMMSG00000012754 #18 ENSMMSG00000012719 #19 SLFN14 (ENSMMSG00000012689) #20 PEX12 (ENSMMSG00000012661) #21 ENSMMSG00000012554 ##22 RASL10B (ENSMMSG00000012523) #23 GAS2L2 (ENSMMSG00000012477) C17orf50 (ENSMMSG00000012439) #25 MMP28 (ENSMMSG00000012400) #26 TAF15 (ENSMMSG00000012333) #27 HEATR9 (ENSMMSG00000012236) #28 ENSMMSG00000012217 #29 ENSMMSG00000012206 #30 ENSMMSG00000012185 #31 ENSMMSG00000012172 ENSMMSG00000012162 ##37 ENSMMSG00000012140 ENSMMSG00000012133 ##37 ENSMMSG00000012107 ##37 ENSMMSG00000012084 Pecora ANCESTRAL SPECIES ENSGT00940000155206.c.b.b ##22 Percora_a ANCESTRAL SPECIES ENSGT00940000155206.c.b.b ##22 Bovidae ANCESTRAL SPECIES ENSGT00940000155206.c.b.b ##22 Bovinae ANCESTRAL SPECIES ENSGT00940000155206.c.b.b ##22 Bos ANCESTRAL SPECIES 19 ENSGT00940000155695 ENSGT00950000186448 ENSGT00960000190646 ENSGT00390000004766 ENSGT00940000154798.a.d.a ENSGT00390000004856.w.a.a.b.b.a.b.a ENSGT00530000063426.b.b ENSGT00390000002563.b.a.a ENSGT00390000002563.a ENSGT00940000153295.b ENSGT00940000155839 ENSGT00940000155610 ENSGT00940000155377 ENSGT00940000156143 ENSGT00510000046985.h.b.a.a.b ENSGT00940000155206.c.b.b ##22 ENSGT00940000154272.A ENSGT00940000160200 ENSGT00940000154550.a.e.b.b ENSGT00940000155625 ENSGT00940000164601.e ENSGT00940000157719 ENSGT00730000111138 ENSGT00390000007284 ENSGT00950000182919.A ENSGT00940000155184 ENSGT00940000162208 ENSGT00390000011769 ENSGT00940000157179 ENSGT00390000001627.a ENSGT00950000183001.a.b.a Bos_a ANCESTRAL SPECIES 18 ENSGT00880000138028.b.b ENSGT00940000155695 ENSGT00390000004766 ENSGT00940000154798.a.d.a ENSGT00390000004856.w.a.a.b.b.a.b.a ENSGT00530000063426.b.b ENSGT00390000002563.b.a.a ENSGT00390000002563.a ENSGT00940000153295.b ENSGT00940000155839 ENSGT00940000155610 ENSGT00950000183010.a.b.a.a.a.a.a.b.b.i.b ENSGT00940000155377 ENSGT00940000156143 ENSGT00510000046985.h.b.a.a.b ENSGT00940000155206.c.b.b ##22 ENSGT00940000154272.A ENSGT00940000160200 ENSGT00940000154550.a.e.b.b ENSGT00940000155625 ENSGT00940000164932 ENSGT00940000157719 ENSGT00730000111138 ENSGT00390000007284 ENSGT00950000182919.A ENSGT00940000155184 ENSGT00940000162208 ENSGT00390000011769 ENSGT00940000157179 ENSGT00390000001627.a ENSGT00950000183001.a.b.a Domestic yak MODERN SPECIES 1 ENSBGRG00000005152 ENSBGRG00000005146 ENSBGRG00000005140 PREP (ENSBGRG00000005031) POPDC3 (ENSBGRG00000005006) BVES (ENSBGRG00000004850) LIN28B (ENSBGRG00000004803) ENSBGRG00000004777 HACE1 (ENSBGRG00000004127) ENSBGRG00000004076 ENSBGRG00000004053 GRIK2 (ENSBGRG00000003805) ASCC3 (ENSBGRG00000003723) SIM1 (ENSBGRG00000003658) ENSBGRG00000003627 ENSBGRG00000003604 ##22 ENSBGRG00000003594 ENSBGRG00000003580 PRDM13 (ENSBGRG00000026581) ENSBGRG00000026578 ENSBGRG00000026554 TSTD3 (ENSBGRG00000026535) USP45 (ENSBGRG00000026528) PNISR (ENSBGRG00000026524) COQ3 (ENSBGRG00000026518) FAXC (ENSBGRG00000026514) FBXL4 (ENSBGRG00000026508) POU3F2 (ENSBGRG00000026502) ENSBGRG00000026495 MMS22L (ENSBGRG00000026462) KLHL32 (ENSBGRG00000026432) Wild yak MODERN SPECIES 1440 ASCC3 (ENSBMUG00000025567) SIM1 (ENSBMUG00000025561) ENSBMUG00000025556 ENSBMUG00000025553 ##22 MCHR2 (ENSBMUG00000025547) PRDM13 (ENSBMUG00000025544) ENSBMUG00000025541 ENSBMUG00000025528 TSTD3 (ENSBMUG00000025494) USP45 (ENSBMUG00000025490) PNISR (ENSBMUG00000025486) COQ3 (ENSBMUG00000025485) FAXC (ENSBMUG00000025484) FBXL4 (ENSBMUG00000025478) ENSBMUG00000025474 Bos_b ANCESTRAL SPECIES 24 ENSGT00880000138028.b.b ENSGT00940000155695 ENSGT00390000004766 ENSGT00940000154798.a.d.a ENSGT00530000063426.b.b ENSGT00390000002563.b.a.a ENSGT00390000002563.a ENSGT00940000153295.b ENSGT00940000155839 ENSGT01100000263481.n.a.a.a.a.a.b.b.b ENSGT01030000236423 ENSGT00940000155610 ENSGT00940000155377 ENSGT00940000156143 ENSGT00510000046985.h.b.a.a.b ENSGT00940000155206.c.b.b ##22 ENSGT00940000154272.A ENSGT00940000160200 ENSGT00940000154550.a.e.b.b ENSGT00940000155625 ENSGT00940000164601.e ENSGT00940000157719 ENSGT00730000111138 ENSGT00390000007284 ENSGT00950000182919.A ENSGT00940000155184 ENSGT00940000162208 ENSGT00390000011769 ENSGT00940000157179 ENSGT00390000001627.a ENSGT00950000183001.a.b.a Cow MODERN SPECIES 28 CRYBG1 (ENSBTAG00000017527) ENSBTAG00000052057 ATG5 (ENSBTAG00000005400) PRDM1 (ENSBTAG00000000816) PREP (ENSBTAG00000016281) POPDC3 (ENSBTAG00000046017) BVES (ENSBTAG00000018790) LIN28B (ENSBTAG00000043973) HACE1 (ENSBTAG00000001533) ENSBTAG00000051738 ENSBTAG00000053858 GRIK2 (ENSBTAG00000033153) ASCC3 (ENSBTAG00000020482) SIM1 (ENSBTAG00000002294) ENSBTAG00000014104 ENSBTAG00000052778 ##22 MCHR2 (ENSBTAG00000005449) PRDM13 (ENSBTAG00000006095) ENSBTAG00000054078 CCNC (ENSBTAG00000015744) USP45 (ENSBTAG00000018528) TSTD3 (ENSBTAG00000038931) PNISR (ENSBTAG00000019730) COQ3 (ENSBTAG00000019729) FAXC (ENSBTAG00000044061) FBXL4 (ENSBTAG00000005729) POU3F2 (ENSBTAG00000024773) MMS22L (ENSBTAG00000000629) KLHL32 (ENSBTAG00000005301) NDUFAF4 (ENSBTAG00000003174) GPR63 (ENSBTAG00000002915) Hybrid Bos Indicus MODERN SPECIES 28 ENSBIXG00005029830 ENSBIXG00005029840 PREP (ENSBIXG00005029865) POPDC3 (ENSBIXG00005029917) BVES (ENSBIXG00005029927) ENSBIXG00005029941 LIN28B (ENSBIXG00005029958) HACE1 (ENSBIXG00005030042) ENSBIXG00005030149 ENSBIXG00005030156 ENSBIXG00005030182 GRIK2 (ENSBIXG00005030262) ASCC3 (ENSBIXG00005030349) SIM1 (ENSBIXG00005030367) ENSBIXG00005030383 ENSBIXG00005030391 ##22 MCHR2 (ENSBIXG00005030398) PRDM13 (ENSBIXG00005030415) ENSBIXG00005030422 ENSBIXG00005030448 ENSBIXG00005030467 USP45 (ENSBIXG00005030475) PNISR (ENSBIXG00005030498) COQ3 (ENSBIXG00005030514) FAXC (ENSBIXG00005030527) FBXL4 (ENSBIXG00005030544) POU3F2 (ENSBIXG00005030555) MMS22L (ENSBIXG00005030633) KLHL32 (ENSBIXG00005030681) NDUFAF4 (ENSBIXG00005030722) GPR63 (ENSBIXG00005030728) Yarkand deer MODERN SPECIES 20 CRYBG1 (ENSCHYG00000022057) ATG5 (ENSCHYG00000022719) PRDM1 (ENSCHYG00000022882) PREP (ENSCHYG00000023040) ENSCHYG00000023289 POPDC3 (ENSCHYG00000023314) BVES (ENSCHYG00000023334) LIN28B (ENSCHYG00000023383) HACE1 (ENSCHYG00000023545) ENSCHYG00000024260 ENSCHYG00000024278 ENSCHYG00000024291 GRIK2 (ENSCHYG00000024358) ASCC3 (ENSCHYG00000024791) SIM1 (ENSCHYG00000024834) ENSCHYG00000024861 ##22 PRDM13 (ENSCHYG00000024927) ENSCHYG00000024960 CCNC (ENSCHYG00000025007) TSTD3 (ENSCHYG00000025097) USP45 (ENSCHYG00000025122) PNISR (ENSCHYG00000025150) COQ3 (ENSCHYG00000025175) FAXC (ENSCHYG00000025221) FBXL4 (ENSCHYG00000025242) POU3F2 (ENSCHYG00000025261) MMS22L (ENSCHYG00000025279) KLHL32 (ENSCHYG00000025369) NDUFAF4 (ENSCHYG00000025688) FHL5 (ENSCHYG00000025707) UFL1 (ENSCHYG00000025727) Atlantogenata ANCESTRAL SPECIES 1 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a.c ##37 ENSGT01100000263482.C.c.b.b.b ##37 ENSGT01100000263482.C.c.a.d ##37 Xenarthra ANCESTRAL SPECIES 52 ENSGT01100000263482.A.a.a.d.a.a.b ##37 ENSGT01100000263482.A.a.a.d.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.b ##20 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.b.a.b #37 ENSGT01100000263482.C.c.a.d ##37 ENSGT00520000060616 Sloth MODERN SPECIES 5998 AP2B1 (ENSCHOG00000010864) #22 RASL10B (ENSCHOG00000010880) #23 ENSCHOG00000010885 Armadillo MODERN SPECIES 596 CCL11 (ENSDNOG00000045103) ##37 CCL13 (ENSDNOG00000047977) ##37 ENSDNOG00000042008 TMEM132E (ENSDNOG00000049593) CCT6B (ENSDNOG00000019733) ZNF830 (ENSDNOG00000019735) LIG3 (ENSDNOG00000007045) RFFL (ENSDNOG00000007069) RAD51D (ENSDNOG00000036437) FNDC8 (ENSDNOG00000005076) NLE1 (ENSDNOG00000032603) UNC45B (ENSDNOG00000005083) SLFN5 (ENSDNOG00000033270) ##20 SLFN14 (ENSDNOG00000044386) #20 PEX12 (ENSDNOG00000039512) #21 AP2B1 (ENSDNOG00000005114) #22 RASL10B (ENSDNOG00000035899) #23 GAS2L2 (ENSDNOG00000005139) MMP28 (ENSDNOG00000038104) #26 C17orf50 (ENSDNOG00000043929) #25 TAF15 (ENSDNOG00000006956) #27 HEATR9 (ENSDNOG00000017262) #28 ENSDNOG00000006974 #29 ENSDNOG00000049803 #31 ENSDNOG00000046700 #32 ENSDNOG00000033984 ##37 ENSDNOG00000032465 #37 ENSDNOG00000043185 #37 ENSDNOG00000033530 ##37 ENSDNOG00000046185 ENSDNOG00000035136 Afrotheria ANCESTRAL SPECIES 2 ENSGT00940000154991.b ENSGT01100000263482.A.a.a.d.a.a.a.a ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT00940000168309 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.a.c ##37 ENSGT01100000263482.C.c.b.b.b ##37 ENSGT01100000263482.C.c.a.d ##37 ENSGT00530000064879 ENSGT00520000060616 Afrotheria_a ANCESTRAL SPECIES 2 ENSGT00940000154991.b ENSGT01100000263482.A.a.a.d.a.a.a.a ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339 ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT00940000168309 ENSGT01100000263482.C.c.b.a.b.b #31 ENSGT01100000263482.C.c.b.a.b.a #32 ENSGT01100000263482.C.c.a.c ##37 ENSGT01100000263482.C.c.b.b.b ##37 ENSGT00530000064879 ENSGT01100000263482.C.c.a.d ##37 ENSGT00520000060616 ENSGT00390000016675 Elephant MODERN SPECIES 310 ENSLAFG00000004719 ##37 CCL8 (ENSLAFG00000013122) ##37 ENSLAFG00000002372 TMEM132E (ENSLAFG00000006799) CCT6B (ENSLAFG00000018317) ZNF830 (ENSLAFG00000030751) LIG3 (ENSLAFG00000001574) RFFL (ENSLAFG00000018323) RAD51D (ENSLAFG00000018328) FNDC8 (ENSLAFG00000018333) NLE1 (ENSLAFG00000018338) UNC45B (ENSLAFG00000018342) ENSLAFG00000016240 #19 SLFN14 (ENSLAFG00000027215) #20 PEX12 (ENSLAFG00000011836) #21 AP2B1 (ENSLAFG00000015777) #22 RASL10B (ENSLAFG00000021899) #23 GAS2L2 (ENSLAFG00000022800) ENSLAFG00000023016 #18 C17orf50 (ENSLAFG00000025653) #25 MMP28 (ENSLAFG00000018326) #26 TAF15 (ENSLAFG00000018332) #27 HEATR9 (ENSLAFG00000025920) #28 ENSLAFG00000011380 ##37 CCL14 (ENSLAFG00000020887) #31 ENSLAFG00000008591 #32 ENSLAFG00000011865 ##37 ENSLAFG00000014470 ##37 ENSLAFG00000030741 ENSLAFG00000026952 ENSLAFG00000026430 Hyrax MODERN SPECIES 4887 AP2B1 (ENSPCAG00000006461) #22 GAS2L2 (ENSPCAG00000006543) Tenrec MODERN SPECIES 8070 SLFN14 (ENSETEG00000005220) #20 AP2B1 (ENSETEG00000005222) #22 RASL10B (ENSETEG00000005229) #23 ENSETEG00000005230 #24 ENSETEG00000005235 #26 Marsupialia ANCESTRAL SPECIES 2 ENSGT01100000263482.A.a.a.a.a ##37 ENSGT01100000263482.A.a.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339.l ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.b #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.a.b.a.a #32 ENSGT01100000263482.C.c.a.b ##37 ENSGT01100000263482.C.c.a.a ##37 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Marsupialia_b ANCESTRAL SPECIES 1 ENSGT01100000263482.A.a.a.a.b.a ##37 ENSGT01100000263482.A.a.a.b ##37 ENSGT01030000234760 ENSGT00940000158479 ENSGT00940000156339.l ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000162866 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.b #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.a.b.a.a #32 ENSGT01100000263482.C.c.a.b ##37 ENSGT01100000263482.C.c.a.a ##37 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b Diprotodontia ANCESTRAL SPECIES 5 ENSGT01100000263482.A.a.a.a.b.b ##37 ENSGT01100000263482.A.a.a.a.b.a ##37 ENSGT01100000263482.A.a.a.b ##37 ENSGT00940000158479 ENSGT00940000156339.l ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.b #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.a.b.a.a #32 ENSGT01100000263482.C.c.a.b ##37 ENSGT01100000263482.C.c.a.a ##37 ENSGT00390000016675 ENSGT00940000153818.a.b.a.b ENSGT00940000162465 Diprotodontia_a ANCESTRAL SPECIES 6 ENSGT01100000263482.A.a.a.a.b.b ##37 ENSGT01100000263482.A.a.a.a.b.a ##37 ENSGT01100000263482.A.a.a.b ##37 ENSGT00940000158479 ENSGT00940000156339.l ENSGT00390000012151 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00390000006458 ENSGT00940000157881 ENSGT00940000157654 ENSGT00410000025651.A.b.a.a.a.a #19 ENSGT00410000025651.A.b.b #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000162866 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000007247 #28 ENSGT01100000263482.D #29 ENSGT01100000263482.C.c.b.a.b.a.b #32 ENSGT01100000263482.C.c.b.a.a ##37 ENSGT01100000263482.C.c.b.a.b.a.a #32 ENSGT01100000263482.C.c.a.b ##37 ENSGT01100000263482.C.c.a.a ##37 ENSGT00970000198103 ENSGT00390000016675 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1007 TMEM98 (ENSVURG00010011902) ASIC2 (ENSVURG00010011918) ENSVURG00010011934 ENSVURG00010011947 ##37 ENSVURG00010011968 ENSVURG00010012137 ENSVURG00010012324 ENSVURG00010012330 ENSVURG00010012349 ENSVURG00010012360 ENSVURG00010012368 ENSVURG00010012378 ENSVURG00010012399 #19 ENSVURG00010012414 #20 ENSVURG00010012437 #21 ENSVURG00010012444 #22 ENSVURG00010012483 #23 ENSVURG00010012517 #24 ENSVURG00010012622 #25 ENSVURG00010012627 #26 ENSVURG00010012645 #27 ENSVURG00010012661 #29 ENSVURG00010012668 #32 ENSVURG00010012682 ##37 ENSVURG00010012701 ##37 ENSVURG00010012706 ##37 ENSVURG00010012788 ENSVURG00010013938 ENSVURG00010013966 ENSVURG00010013974 ENSVURG00010013981 Common wonbat MODERN SPECIES 1007 ENSVURG00010015097 ENSVURG00010015121 ##37 ENSVURG00010015173 ENSVURG00010015376 ENSVURG00010015482 ENSVURG00010015491 ENSVURG00010015527 ENSVURG00010015558 ENSVURG00010015596 ENSVURG00010015626 ENSVURG00010015693 #19 ENSVURG00010015701 #20 ENSVURG00010015711 #21 ENSVURG00010015727 #22 ENSVURG00010015773 #23 ENSVURG00010015798 #24 ENSVURG00010015909 #25 ENSVURG00010015920 #26 ENSVURG00010015930 #27 ENSVURG00010015947 #29 ENSVURG00010015955 #32 ENSVURG00010015981 ##37 ENSVURG00010015996 ##37 ENSVURG00010016004 ##37 ENSVURG00010016008 ENSVURG00010016074 ENSVURG00010017226 ENSVURG00010017283 ENSVURG00010017302 koala MODERN SPECIES 4 CCT6B (ENSPCIG00000003668) ZNF830 (ENSPCIG00000003674) LIG3 (ENSPCIG00000003680) RFFL (ENSPCIG00000003696) RAD51D (ENSPCIG00000014413) ENSPCIG00000031157 NLE1 (ENSPCIG00000007697) UNC45B (ENSPCIG00000005742) ENSPCIG00000003699 #19 SLFN14 (ENSPCIG00000003715) #20 PEX12 (ENSPCIG00000003725) #21 AP2B1 (ENSPCIG00000003733) #22 RASL10B (ENSPCIG00000003771) #23 ENSPCIG00000032524 #24 ENSPCIG00000003773 ENSPCIG00000003779 #25 MMP28 (ENSPCIG00000003781) #26 TAF15 (ENSPCIG00000003783) #27 ENSPCIG00000003789 #28 ENSPCIG00000003792 #29 ENSPCIG00000003794 #32 ENSPCIG00000036427 ##37 ENSPCIG00000003798 #32 ENSPCIG00000003810 ##37 ENSPCIG00000026474 ##37 ENSPCIG00000026475 ##37 ENSPCIG00000026476 Wallaby MODERN SPECIES 9923 AP2B1 (ENSMEUG00000015813) #22 RASL10B (ENSMEUG00000015827) #23 ENSMEUG00000015835 #24 ENSMEUG00000015861 #25 MMP28 (ENSMEUG00000015871) #26 Tasmanian devil MODERN SPECIES 3 ENSSHAG00000013914 ##37 ENSSHAG00000013669 ##37 ENSSHAG00000013613 TMEM132E (ENSSHAG00000011259) ZNF830 (ENSSHAG00000030733) CCT6B (ENSSHAG00000022288) LIG3 (ENSSHAG00000006134) RFFL (ENSSHAG00000005858) RAD51D (ENSSHAG00000004510) ENSSHAG00000004314 NLE1 (ENSSHAG00000004045) UNC45B (ENSSHAG00000003067) ENSSHAG00000002296 #19 SLFN14 (ENSSHAG00000000713) #20 PEX12 (ENSSHAG00000006809) #21 AP2B1 (ENSSHAG00000005269) #22 RASL10B (ENSSHAG00000024132) #23 ENSSHAG00000030243 ENSSHAG00000000447 #24 ENSSHAG00000023276 #25 MMP28 (ENSSHAG00000026854) #26 TAF15 (ENSSHAG00000003105) #27 ENSSHAG00000001914 #28 ENSSHAG00000023386 #32 ENSSHAG00000020752 ##37 ENSSHAG00000000454 #32 ENSSHAG00000030788 ##37 ENSSHAG00000020853 ##37 ENSSHAG00000001832 ##37 ENSSHAG00000022730 ##37 ENSSHAG00000026107 #31 Opossum MODERN SPECIES 1 ENSMODG00000019157 ##37 ENSMODG00000019155 ZNF830 (ENSMODG00000019150) CCT6B (ENSMODG00000019152) LIG3 (ENSMODG00000019147) RFFL (ENSMODG00000019143) RAD51D (ENSMODG00000019141) ENSMODG00000028821 NLE1 (ENSMODG00000019137) UNC45B (ENSMODG00000019133) ENSMODG00000039989 ENSMODG00000039391 #19 SLFN14 (ENSMODG00000019130) #20 ENSMODG00000027779 PEX12 (ENSMODG00000019129) #21 AP2B1 (ENSMODG00000019128) #22 RASL10B (ENSMODG00000019126) #23 ENSMODG00000019125 #24 ENSMODG00000046981 #25 MMP28 (ENSMODG00000019124) #26 TAF15 (ENSMODG00000019123) #27 ENSMODG00000019121 #29 ENSMODG00000028688 #32 ENSMODG00000028122 ##37 ENSMODG00000019120 #32 ENSMODG00000019114 ##37 ENSMODG00000025694 ##37 ENSMODG00000019113 ##37 HEATR6 (ENSMODG00000019111) HNF1B (ENSMODG00000019108) ENSMODG00000047438 Platypus MODERN SPECIES 8 ENSOANG00000050426 ENSOANG00000048769 ENSOANG00000002929 ##37 ENSOANG00000047804 ENSOANG00000044227 ENSOANG00000021072 ##37 ENSOANG00000050489 TMEM132E (ENSOANG00000043508) LIG3 (ENSOANG00000050784) RFFL (ENSOANG00000049711) ENSOANG00000046664 NLE1 (ENSOANG00000036408) ENSOANG00000044566 UNC45B (ENSOANG00000044231) PEX12 (ENSOANG00000042515) #21 AP2B1 (ENSOANG00000050274) #22 RASL10B (ENSOANG00000038310) #23 ENSOANG00000040830 #24 ENSOANG00000045644 #25 MMP28 (ENSOANG00000014274) #26 TAF15 (ENSOANG00000014273) #27 ENSOANG00000036567 POR (ENSOANG00000043253) ENSOANG00000042315 STYXL1 (ENSOANG00000040559) MDH2 (ENSOANG00000001378) ENSOANG00000049511 ENSOANG00000041397 ENSOANG00000045340 HSPB1 (ENSOANG00000043454) YWHAG (ENSOANG00000044061) Sauria ANCESTRAL SPECIES 18 ENSGT00940000158514 ENSGT00940000161467 ENSGT00940000155974 ENSGT00940000153253.b.a ENSGT00940000153594.d ENSGT01100000263482.A.b ##37 ENSGT01100000263482.F ##37 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00940000165977 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT00900000142991 Archelosauria ANCESTRAL SPECIES 18 ENSGT00960000188078 ENSGT00940000154126.h.b.a.b ENSGT01100000263482.C.b.a.a #37 ENSGT01100000263482.B.b #30 ENSGT01100000263482.D #29 ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00940000165977 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT00900000142991 Archosauria ANCESTRAL SPECIES 18 ENSGT01100000263482.B.a #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 Aves ANCESTRAL SPECIES 18 ENSGT00390000008983.b ENSGT00940000156339 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 African ostrich MODERN SPECIES 1007 LIG3 (ENSSCUG00000013712) RFFL (ENSSCUG00000013718) RAD51D (ENSSCUG00000013719) UNC45B (ENSSCUG00000013721) ENSSCUG00000013725 ##20 PEX12 (ENSSCUG00000013729) #21 AP2B1 (ENSSCUG00000013799) #22 RASL10B (ENSSCUG00000013917) #23 MMP28 (ENSSCUG00000013920) #26 TAF15 (ENSSCUG00000013929) #27 RHBDD2 (ENSSCUG00000013940) POR (ENSSCUG00000013947) TMEM120A (ENSSCUG00000013956) ENSSCUG00000013958 MDH2 (ENSSCUG00000013964) Neognathae ANCESTRAL SPECIES 18 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00950000185966 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Neognathae_b ANCESTRAL SPECIES 20 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00950000185966 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Passeriformes ANCESTRAL SPECIES 18 ENSGT00940000156339 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Passeriformes_d ANCESTRAL SPECIES 18 ENSGT00940000156339 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00940000165977 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 Passeriformes_g ANCESTRAL SPECIES 18 ENSGT00940000156339 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Medium ground finch MODERN SPECIES 90 ENSGFOG00000003371 CCT6B (ENSGFOG00000002959) PSPH (ENSGFOG00000002913) NIPSNAP2 (ENSGFOG00000002871) MRPS17 (ENSGFOG00000002862) ENSGFOG00000002814 ENSGFOG00000002803 #30 ENSGFOG00000002785 ENSGFOG00000002768 TMEM132E (ENSGFOG00000002732) LIG3 (ENSGFOG00000002126) RFFL (ENSGFOG00000002052) RAD51D (ENSGFOG00000002037) UNC45B (ENSGFOG00000001128) PEX12 (ENSGFOG00000000983) #21 AP2B1 (ENSGFOG00000000948) #22 RASL10B (ENSGFOG00000000933) #23 ENSGFOG00000000917 #24 MMP28 (ENSGFOG00000000904) #26 ENSGFOG00000000894 TAF15 (ENSGFOG00000000872) #27 ENSGFOG00000000852 POR (ENSGFOG00000000818) TMEM120A (ENSGFOG00000000663) ENSGFOG00000000640 MDH2 (ENSGFOG00000000621) SRRM3 (ENSGFOG00000000606) ENSGFOG00000000595 HSPB1 (ENSGFOG00000000587) YWHAG (ENSGFOG00000000583) ENSGFOG00000000570 Passeroidea ANCESTRAL SPECIES 20 ENSGT00940000156339 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT00940000155882.a.a ENSGT01030000235453 ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Zebra finch MODERN SPECIES 10 ENSTGUG00000005131 CCT6B (ENSTGUG00000005105) PSPH (ENSTGUG00000021934) NIPSNAP2 (ENSTGUG00000005056) MRPS17 (ENSTGUG00000026540) ENSTGUG00000005025 ENSTGUG00000005024 #30 ENSTGUG00000024039 TMEM132E (ENSTGUG00000005003) LIG3 (ENSTGUG00000004932) RFFL (ENSTGUG00000004921) RAD51D (ENSTGUG00000004887) UNC45B (ENSTGUG00000004851) ENSTGUG00000026935 PEX12 (ENSTGUG00000004847) #21 AP2B1 (ENSTGUG00000004771) #22 RASL10B (ENSTGUG00000023856) #23 ENSTGUG00000004758 #24 MMP28 (ENSTGUG00000004745) #26 TAF15 (ENSTGUG00000004702) #27 ENSTGUG00000004693 POR (ENSTGUG00000004657) TMEM120A (ENSTGUG00000004630) ENSTGUG00000004616 MDH2 (ENSTGUG00000004571) SRRM3 (ENSTGUG00000027467) HSPB1 (ENSTGUG00000004559) ENSTGUG00000021133 YWHAG (ENSTGUG00000004553) SSC4D (ENSTGUG00000004547) DTX2 (ENSTGUG00000004526) Common canary MODERN SPECIES 28 CCT6B (ENSSCAG00000006650) PSPH (ENSSCAG00000006646) NIPSNAP2 (ENSSCAG00000006643) MRPS17 (ENSSCAG00000006640) ENSSCAG00000006625 ENSSCAG00000006618 #30 ENSSCAG00000006617 ENSSCAG00000006614 TMEM132E (ENSSCAG00000006611) LIG3 (ENSSCAG00000006598) RFFL (ENSSCAG00000006590) RAD51D (ENSSCAG00000006580) UNC45B (ENSSCAG00000006357) ENSSCAG00000006312 PEX12 (ENSSCAG00000006302) #21 AP2B1 (ENSSCAG00000006287) #22 RASL10B (ENSSCAG00000006283) #23 ENSSCAG00000006274 #24 MMP28 (ENSSCAG00000006269) #26 TAF15 (ENSSCAG00000006263) #27 RHBDD2 (ENSSCAG00000006252) POR (ENSSCAG00000006242) TMEM120A (ENSSCAG00000006149) ENSSCAG00000006123 MDH2 (ENSSCAG00000006093) HSPB1 (ENSSCAG00000006083) YWHAG (ENSSCAG00000006079) ENSSCAG00000006074 ENSSCAG00000006072 DTX2 (ENSSCAG00000006060) ENSSCAG00000006046 Flycatcher MODERN SPECIES 9 ENSFALG00000006781 CHCHD2 (ENSFALG00000006769) ENSFALG00000006782 PSPH (ENSFALG00000006784) NIPSNAP2 (ENSFALG00000006790) MRPS17 (ENSFALG00000026220) ENSFALG00000006800 ENSFALG00000028260 #30 ENSFALG00000023753 ENSFALG00000006806 LIG3 (ENSFALG00000009743) RFFL (ENSFALG00000009730) RAD51D (ENSFALG00000009726) UNC45B (ENSFALG00000009721) PEX12 (ENSFALG00000009719) #21 AP2B1 (ENSFALG00000009715) #22 RASL10B (ENSFALG00000027159) #23 ENSFALG00000027238 #24 MMP28 (ENSFALG00000009701) #26 ENSFALG00000009696 #27 ENSFALG00000009693 POR (ENSFALG00000009688) TMEM120A (ENSFALG00000009669) MDH2 (ENSFALG00000009620) SRRM3 (ENSFALG00000009603) ENSFALG00000026877 HSPB1 (ENSFALG00000009587) YWHAG (ENSFALG00000026928) ENSFALG00000028705 ENSFALG00000009575 DTX2 (ENSFALG00000009561) Great tit MODERN SPECIES 9 PHKG1 (ENSPMJG00000019011) SUMF2 (ENSPMJG00000019010) CCT6B (ENSPMJG00000019007) PSPH (ENSPMJG00000019006) NIPSNAP2 (ENSPMJG00000019005) MRPS17 (ENSPMJG00000019004) ENSPMJG00000019003 ENSPMJG00000019002 ENSPMJG00000019001 TMEM132E (ENSPMJG00000019000) LIG3 (ENSPMJG00000018995) RFFL (ENSPMJG00000018994) RAD51D (ENSPMJG00000018993) UNC45B (ENSPMJG00000018992) PEX12 (ENSPMJG00000018990) #21 AP2B1 (ENSPMJG00000018989) #22 RASL10B (ENSPMJG00000018988) #23 ENSPMJG00000018987 #24 MMP28 (ENSPMJG00000018986) #26 TAF15 (ENSPMJG00000018985) #27 RHBDD2 (ENSPMJG00000018984) POR (ENSPMJG00000018982) TMEM120A (ENSPMJG00000018981) ENSPMJG00000018980 MDH2 (ENSPMJG00000018979) SRRM3 (ENSPMJG00000018978) HSPB1 (ENSPMJG00000018977) YWHAG (ENSPMJG00000018976) SSC4D (ENSPMJG00000018975) DTX2 (ENSPMJG00000018974) UPK3B (ENSPMJG00000018973) Neognathae_c ANCESTRAL SPECIES 22 ENSGT00390000003115 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00950000185966 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00950000183145.D ENSGT00940000157641 Golden eagle MODERN SPECIES 1 NIPSNAP2 (ENSACCG00020004694) MRPS17 (ENSACCG00020004684) ENSACCG00020004671 ENSACCG00020004655 #30 ENSACCG00020004647 ENSACCG00020004634 #30 ENSACCG00020004625 ENSACCG00020004618 TMEM132E (ENSACCG00020004605) LIG3 (ENSACCG00020004580) RFFL (ENSACCG00020004557) RAD51D (ENSACCG00020004546) ENSACCG00020004538 UNC45B (ENSACCG00020004519) PEX12 (ENSACCG00020004505) #21 AP2B1 (ENSACCG00020004479) #22 RASL10B (ENSACCG00020004455) #23 ENSACCG00020004447 #24 MMP28 (ENSACCG00020004423) #26 TAF15 (ENSACCG00020004390) #27 RHBDD2 (ENSACCG00020004381) ENSACCG00020004375 POR (ENSACCG00020004354) TMEM120A (ENSACCG00020004328) ENSACCG00020004308 MDH2 (ENSACCG00020004291) ENSACCG00020004279 ENSACCG00020004262 HSPB1 (ENSACCG00020004255) ENSACCG00020004250 YWHAG (ENSACCG00020004244) Kakapo MODERN SPECIES 58 CCT6B (ENSSHBG00005006893) PSPH (ENSSHBG00005006877) NIPSNAP2 (ENSSHBG00005006860) ENSSHBG00005006847 ENSSHBG00005006541 ENSSHBG00005006507 #30 ENSSHBG00005006454 ENSSHBG00005006430 TMEM132E (ENSSHBG00005006409) LIG3 (ENSSHBG00005006388) RFFL (ENSSHBG00005006362) RAD51D (ENSSHBG00005006327) ENSSHBG00005006311 UNC45B (ENSSHBG00005006213) PEX12 (ENSSHBG00005006156) #21 AP2B1 (ENSSHBG00005006021) #22 RASL10B (ENSSHBG00005006000) #23 ENSSHBG00005005958 #24 MMP28 (ENSSHBG00005005940) #26 TAF15 (ENSSHBG00005005797) #27 RHBDD2 (ENSSHBG00005005771) POR (ENSSHBG00005005716) TMEM120A (ENSSHBG00005000765) ENSSHBG00005000755 MDH2 (ENSSHBG00005000746) SRRM3 (ENSSHBG00005013038) ENSSHBG00005013030 HSPB1 (ENSSHBG00005013023) YWHAG (ENSSHBG00005013017) ENSSHBG00005012997 ENSSHBG00005012984 Galloanserae ANCESTRAL SPECIES 17 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00950000185966 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Phasianidae ANCESTRAL SPECIES 17 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00950000185966 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT01070000257310 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 Japanese quail MODERN SPECIES 10 MRPS17 (ENSCJPG00005010031) ENSCJPG00005010024 ENSCJPG00005010023 #30 ENSCJPG00005010021 #30 ENSCJPG00005010019 ENSCJPG00005010017 #30 ENSCJPG00005010016 ENSCJPG00005010014 TMEM132E (ENSCJPG00005009953) LIG3 (ENSCJPG00005009942) RFFL (ENSCJPG00005009925) RAD51D (ENSCJPG00005009921) ENSCJPG00005009920 UNC45B (ENSCJPG00005009918) PEX12 (ENSCJPG00005009914) #21 AP2B1 (ENSCJPG00005009912) #22 RASL10B (ENSCJPG00005009905) #23 ENSCJPG00005009902 #24 MMP28 (ENSCJPG00005009900) #26 TAF15 (ENSCJPG00005009893) #27 ENSCJPG00005009827 POR (ENSCJPG00005009821) TMEM120A (ENSCJPG00005009816) ENSCJPG00005009815 MDH2 (ENSCJPG00005009814) SRRM3 (ENSCJPG00005009813) HSPB1 (ENSCJPG00005009812) YWHAG (ENSCJPG00005009811) SSC4D (ENSCJPG00005009805) ENSCJPG00005009804 DTX2 (ENSCJPG00005009802) Phasianidae_b ANCESTRAL SPECIES 17 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT01100000263482.B.a.c #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00950000185966 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT01070000257310 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 Chicken MODERN SPECIES 10 ENSGALG00010029641 #30 ENSGALG00010029643 ENSGALG00010029962 #30 ENSGALG00010029640 ENSGALG00010029639 #30 ENSGALG00010029637 CCL26 (ENSGALG00010029635) CCLI5 (ENSGALG00010029956) TMEM132E (ENSGALG00010029632) LIG3 (ENSGALG00010029631) RFFL (ENSGALG00010029950) RAD51D (ENSGALG00010029630) ENSGALG00010029786 UNC45B (ENSGALG00010029628) PEX12 (ENSGALG00010029627) #21 AP2B1 (ENSGALG00010029626) #22 RASL10B (ENSGALG00010029624) #23 ENSGALG00010029623 #24 MMP28 (ENSGALG00010029622) #26 TAF15 (ENSGALG00010029621) #27 ENSGALG00010029620 ENSGALG00010029619 POR (ENSGALG00010029617) TMEM120A (ENSGALG00010029616) ENSGALG00010029615 MDH2 (ENSGALG00010029614) SRRM3 (ENSGALG00010029613) ENSGALG00010029785 HSPB1 (ENSGALG00010029612) YWHAG (ENSGALG00010029611) SSC4D (ENSGALG00010029159) Turkey MODERN SPECIES 13 ENSMGAG00000003662 ENSMGAG00000003677 ENSMGAG00000022940 ENSMGAG00000003680 ENSMGAG00000003690 ENSMGAG00000003753 MDH2 (ENSMGAG00000003716) ENSMGAG00000003805 ENSMGAG00000003770 ENSMGAG00000003839 ENSMGAG00000021885 #27 ENSMGAG00000003842 #27 ENSMGAG00000004013 #23 ENSMGAG00000004003 #24 ENSMGAG00000003978 #26 ENSMGAG00000004018 #22 ENSMGAG00000004214 ENSMGAG00000019489 UNC45B (ENSMGAG00000004173) ENSMGAG00000004153 ##20 ENSMGAG00000004125 #21 ENSMGAG00000004064 ENSMGAG00000004256 ENSMGAG00000017271 ENSMGAG00000001791 ENSMGAG00000019463 #30 ENSMGAG00000017879 ENSMGAG00000019065 ENSMGAG00000004283 ENSMGAG00000021214 #30 ENSMGAG00000004292 Anatidae ANCESTRAL SPECIES 27 ENSGT00950000183018.a.d ENSGT00530000064130 ENSGT01020000230354.B.b.a.a ENSGT00950000182865.b.b.a ENSGT01100000263482.B.a.c #30 ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00950000185966 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000162625 ENSGT00940000155882.a.a ENSGT01030000235453 ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Pink-footed goose MODERN SPECIES 38 MRPS17 (ENSABRG00000007069) ENSABRG00000007059 ENSABRG00000007050 #30 ENSABRG00000007039 ENSABRG00000007029 #30 ENSABRG00000007024 ENSABRG00000007021 TMEM132E (ENSABRG00000007017) LIG3 (ENSABRG00000004295) RFFL (ENSABRG00000004062) RAD51D (ENSABRG00000003937) ENSABRG00000003886 UNC45B (ENSABRG00000002564) ENSABRG00000002424 ##20 PEX12 (ENSABRG00000002398) #21 AP2B1 (ENSABRG00000002319) #22 RASL10B (ENSABRG00000002299) #23 ENSABRG00000002276 #24 MMP28 (ENSABRG00000002268) #26 TAF15 (ENSABRG00000002253) #27 RHBDD2 (ENSABRG00000002103) POR (ENSABRG00000002005) TMEM120A (ENSABRG00000001955) ENSABRG00000001887 MDH2 (ENSABRG00000001842) SRRM3 (ENSABRG00000001730) HSPB1 (ENSABRG00000001700) ENSABRG00000001693 YWHAG (ENSABRG00000001641) SSC4D (ENSABRG00000001586) DTX2 (ENSABRG00000001492) Duck MODERN SPECIES 11 SUMF2 (ENSAPLG00000011312) CCT6B (ENSAPLG00000010870) PSPH (ENSAPLG00000010694) NIPSNAP2 (ENSAPLG00000010581) MRPS17 (ENSAPLG00000010523) ENSAPLG00000009847 ENSAPLG00000027650 #30 ENSAPLG00000031023 ENSAPLG00000026938 ENSAPLG00000009358 ENSAPLG00000021360 TMEM132E (ENSAPLG00000009524) LIG3 (ENSAPLG00000008964) RFFL (ENSAPLG00000008748) RAD51D (ENSAPLG00000008196) AP2B1 (ENSAPLG00000006779) #22 ENSAPLG00000030046 #23 ENSAPLG00000023918 #24 MMP28 (ENSAPLG00000006470) #26 RHBDD2 (ENSAPLG00000025011) TAF15 (ENSAPLG00000006217) #27 POR (ENSAPLG00000005585) TMEM120A (ENSAPLG00000005153) MDH2 (ENSAPLG00000004591) SRRM3 (ENSAPLG00000004545) YWHAG (ENSAPLG00000004442) ENSAPLG00000003804 ALKBH4 (ENSAPLG00000003499) ORAI2 (ENSAPLG00000003488) PRKRIP1 (ENSAPLG00000026029) SH2B2 (ENSAPLG00000028018) Australian saltwater crocodile MODERN SPECIES 50 LIG3 (ENSCPRG00005005479) RFFL (ENSCPRG00005005502) RAD51D (ENSCPRG00005005512) UNC45B (ENSCPRG00005005522) ENSCPRG00005005532 ENSCPRG00005005537 ##20 ENSCPRG00005005541 PEX12 (ENSCPRG00005005543) #21 AP2B1 (ENSCPRG00005005555) #22 RASL10B (ENSCPRG00005005573) #23 ENSCPRG00005005576 #24 ENSCPRG00005005590 MMP28 (ENSCPRG00005005593) #26 TAF15 (ENSCPRG00005005599) #27 RHBDD2 (ENSCPRG00005005613) POR (ENSCPRG00005005620) TMEM120A (ENSCPRG00005005658) ENSCPRG00005005857 MDH2 (ENSCPRG00005005862) ENSCPRG00005005867 HSPB1 (ENSCPRG00005005874) YWHAG (ENSCPRG00005005881) SSC4D (ENSCPRG00005005887) DTX2 (ENSCPRG00005005904) Cryptodira ANCESTRAL SPECIES 18 ENSGT01100000263482.C.b.b.b #37 ENSGT01100000263482.C.b.b.a #37 ENSGT01100000263482.D #29 ENSGT01100000263482.C.b.a.b #37 ENSGT01100000263482.B.a #30 ENSGT00950000182865.b.b.a ENSGT00940000170193 ENSGT01030000235390 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT00900000142991 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a Testudinoidea ANCESTRAL SPECIES 15 ENSGT01100000263482.C.b.a.a #37 ENSGT01100000263482.C.b.b.b #37 ENSGT01100000263482.C.b.b.a #37 ENSGT01100000263482.D #29 ENSGT01100000263482.C.b.a.b #37 ENSGT01100000263482.B.a #30 ENSGT00950000182865.b.b.a ENSGT01030000235390.b ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT00900000142991 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a Emydidae ANCESTRAL SPECIES 16 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00410000025651.A.a.c ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT00900000142991 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a Three-toed box turtle MODERN SPECIES 106 ENSTMTG00000020580 TMEM132E (ENSTMTG00000020593) LIG3 (ENSTMTG00000020663) RFFL (ENSTMTG00000020681) RAD51D (ENSTMTG00000020691) UNC45B (ENSTMTG00000020729) ENSTMTG00000021058 ##20 ENSTMTG00000021076 #18 PEX12 (ENSTMTG00000021086) #21 AP2B1 (ENSTMTG00000021100) #22 RASL10B (ENSTMTG00000021120) #23 ENSTMTG00000021131 C17orf50 (ENSTMTG00000021173) #25 MMP28 (ENSTMTG00000021182) #26 TAF15 (ENSTMTG00000021209) #27 ENSTMTG00000021228 RHBDD2 (ENSTMTG00000021234) POR (ENSTMTG00000021239) TMEM120A (ENSTMTG00000021257) STYXL1 (ENSTMTG00000021281) MDH2 (ENSTMTG00000021330) HSPB1 (ENSTMTG00000021338) YWHAG (ENSTMTG00000021346) SSC4D (ENSTMTG00000003093) DTX2 (ENSTMTG00000003130) painted turtle MODERN SPECIES 15 KCNIP4 (ENSCPBG00000027922) PACRGL (ENSCPBG00000027917) SLIT2 (ENSCPBG00000027876) CORIN (ENSCPBG00000027875) ATP10D (ENSCPBG00000027872) COMMD8 (ENSCPBG00000027871) ENSCPBG00000027869 GABRA4 (ENSCPBG00000027868) GABRA2 (ENSCPBG00000027867) GABRG1 (ENSCPBG00000027866) ENSCPBG00000027865 ENSCPBG00000027863 UNC45B (ENSCPBG00000027851) ENSCPBG00000027830 ##20 PEX12 (ENSCPBG00000027827) #21 AP2B1 (ENSCPBG00000027826) #22 RASL10B (ENSCPBG00000027825) #23 ENSCPBG00000027824 #24 C17orf50 (ENSCPBG00000027822) #25 MMP28 (ENSCPBG00000027821) #26 TAF15 (ENSCPBG00000027820) #27 ENSCPBG00000027818 RHBDD2 (ENSCPBG00000027817) POR (ENSCPBG00000027812) TMEM120A (ENSCPBG00000027800) STYXL1 (ENSCPBG00000027788) MDH2 (ENSCPBG00000027786) SRRM3 (ENSCPBG00000027784) ENSCPBG00000027783 HSPB1 (ENSCPBG00000027782) YWHAG (ENSCPBG00000027781) Testudinidae ANCESTRAL SPECIES 19 ENSGT01100000263482.C.b.b.a #37 ENSGT01100000263482.D #29 ENSGT01100000263482.C.b.a.b #37 ENSGT01100000263482.B.a #30 ENSGT00950000182865.b.b.a ENSGT00960000192959 ENSGT00940000162512 ENSGT01030000235390.b ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00410000025651.A.a ##20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000007830 #25 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00390000010113 ENSGT00390000016686 ENSGT00900000142991 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Abingdon island giant tortoise MODERN SPECIES 1418 ENSCABG00000004436 #29 ENSCABG00000004432 #37 CCL16 (ENSCABG00000004421) #30 ENSCABG00000004416 ENSCABG00000004415 ENSCABG00000004413 ENSCABG00000004412 ##37 ENSCABG00000004411 TMEM132E (ENSCABG00000004406) LIG3 (ENSCABG00000002691) RFFL (ENSCABG00000002669) RAD51D (ENSCABG00000002447) UNC45B (ENSCABG00000002434) ENSCABG00000002431 ##20 PEX12 (ENSCABG00000002427) #21 AP2B1 (ENSCABG00000002423) #22 RASL10B (ENSCABG00000002413) #23 ENSCABG00000002410 #24 ENSCABG00000002408 #25 MMP28 (ENSCABG00000002406) #26 TAF15 (ENSCABG00000002398) #27 ENSCABG00000002394 RHBDD2 (ENSCABG00000002383) POR (ENSCABG00000002381) TMEM120A (ENSCABG00000002380) ENSCABG00000002378 MDH2 (ENSCABG00000002129) AZIN2 (ENSCABG00000002110) NDUFS5 (ENSCABG00000002109) ENSCABG00000002106 ENSCABG00000002104 Goode s thornscrub tortoise MODERN SPECIES 8 ENSGEVG00005015461 #37 ENSGEVG00005015446 #29 ENSGEVG00005015377 #37 ENSGEVG00005015278 ENSGEVG00005015199 FAM170B (ENSGEVG00005015147) ENSGEVG00005015109 ENSGEVG00005014987 #37 TMEM132E (ENSGEVG00005014760) LIG3 (ENSGEVG00005014673) RFFL (ENSGEVG00005014634) RAD51D (ENSGEVG00005014593) UNC45B (ENSGEVG00005014156) ENSGEVG00005014013 ##20 PEX12 (ENSGEVG00005013971) #21 AP2B1 (ENSGEVG00005013893) #22 RASL10B (ENSGEVG00005013836) #23 ENSGEVG00005013773 #24 C17orf50 (ENSGEVG00005013730) #25 MMP28 (ENSGEVG00005013548) #26 TAF15 (ENSGEVG00005013474) #27 RHBDD2 (ENSGEVG00005013445) POR (ENSGEVG00005013399) TMEM120A (ENSGEVG00005013274) STYXL1 (ENSGEVG00005013243) MDH2 (ENSGEVG00005013216) HSPB1 (ENSGEVG00005013174) YWHAG (ENSGEVG00005013157) ENSGEVG00005013061 DTX2 (ENSGEVG00005012918) UPK3B (ENSGEVG00005012890) Chinese turtle MODERN SPECIES 786 LIG3 (ENSPSIG00000014160) RFFL (ENSPSIG00000014088) RAD51D (ENSPSIG00000013822) UNC45B (ENSPSIG00000013775) ENSPSIG00000013351 ##20 ENSPSIG00000012539 ##20 PEX12 (ENSPSIG00000012532) #21 AP2B1 (ENSPSIG00000007490) #22 RASL10B (ENSPSIG00000007466) #23 CWF19L1 (ENSPSIG00000006990) FZD9 (ENSPSIG00000001750) BAZ1B (ENSPSIG00000006503) ENSPSIG00000006444 MLXIPL (ENSPSIG00000015212) TBL2 (ENSPSIG00000014890) BCL7B (ENSPSIG00000014453) MKS1 (ENSPSIG00000014096) Lepidosauria ANCESTRAL SPECIES 103 ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000010113 ENSGT00390000016686 ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a tuatara MODERN SPECIES 1203 UNC45B (ENSSPUG00000005839) ENSSPUG00000005879 PEX12 (ENSSPUG00000005914) #21 AP2B1 (ENSSPUG00000005938) #22 ENSSPUG00000005963 RASL10B (ENSSPUG00000005974) #23 MMP28 (ENSSPUG00000006018) #26 TAF15 (ENSSPUG00000006042) #27 RHBDD2 (ENSSPUG00000006085) POR (ENSSPUG00000006093) TMEM120A (ENSSPUG00000006102) STYXL1 (ENSSPUG00000006150) MDH2 (ENSSPUG00000006263) SRRM3 (ENSSPUG00000006285) HSPB1 (ENSSPUG00000006322) YWHAG (ENSSPUG00000006341) SSC4D (ENSSPUG00000006350) DTX2 (ENSSPUG00000006368) UPK3B (ENSSPUG00000006384) Episquamata ANCESTRAL SPECIES 13 ENSGT00440000038159 ENSGT00960000192991 ENSGT00940000157044 ENSGT00390000001752 ENSGT00950000183122.B ENSGT00390000014189 ENSGT00390000006030.d.a.b ENSGT00940000161327 ENSGT00940000154540.a ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000156265.x.b.a.a.a.b ENSGT00940000162625 ENSGT01030000235453 ENSGT00940000155882.a.a Laterata ANCESTRAL SPECIES 41 ENSGT00940000158139 ENSGT00440000038159 ENSGT00940000157044 ENSGT00390000001752 ENSGT00950000183122.B ENSGT00390000014189 ENSGT00390000006030.d.a.b ENSGT00940000161327 ENSGT00940000154540.a ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 Common wall lizard MODERN SPECIES 6 DTX2 (ENSPMRG00000017658) ENSPMRG00000017665 ENSPMRG00000017670 YWHAG (ENSPMRG00000017676) ENSPMRG00000017686 HSPB1 (ENSPMRG00000017688) ENSPMRG00000017723 ENSPMRG00000017732 ENSPMRG00000017737 MDH2 (ENSPMRG00000017750) STYXL1 (ENSPMRG00000017774) TMEM120A (ENSPMRG00000017797) POR (ENSPMRG00000017929) RHBDD2 (ENSPMRG00000018356) PEX12 (ENSPMRG00000018371) #21 AP2B1 (ENSPMRG00000018527) #22 RASL10B (ENSPMRG00000018960) #23 ENSPMRG00000018970 #24 MMP28 (ENSPMRG00000018993) #26 ENSPMRG00000019029 UNC45B (ENSPMRG00000019047) ENSPMRG00000019089 RAD51D (ENSPMRG00000019093) RFFL (ENSPMRG00000019104) LIG3 (ENSPMRG00000019161) TMEM132E (ENSPMRG00000019578) RABGEF1 (ENSPMRG00000019642) KCTD7 (ENSPMRG00000019747) TPST1 (ENSPMRG00000019762) CRCP (ENSPMRG00000019769) ASL (ENSPMRG00000019854) Argentine black and white tegu MODERN SPECIES 163 TMEM132E (ENSSMRG00000003737) LIG3 (ENSSMRG00000003745) RFFL (ENSSMRG00000003748) RAD51D (ENSSMRG00000003754) UNC45B (ENSSMRG00000003760) PEX12 (ENSSMRG00000003769) #21 AP2B1 (ENSSMRG00000003773) #22 RASL10B (ENSSMRG00000003821) #23 ENSSMRG00000003825 #24 ENSSMRG00000003830 MMP28 (ENSSMRG00000003832) #26 Toxicofera ANCESTRAL SPECIES 23 ENSGT00440000038159 ENSGT00960000192991 ENSGT00940000157044 ENSGT00390000001752 ENSGT00950000183122.B ENSGT00390000014189 ENSGT00390000006030.d.a.b ENSGT00940000161327 ENSGT00940000154540.a ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521.l ENSGT00940000157641 Elapidae ANCESTRAL SPECIES 20 ENSGT00440000038159 ENSGT00960000192991 ENSGT00940000157044 ENSGT00390000001752 ENSGT00950000183122.B ENSGT00390000014189 ENSGT00390000006030.d.a.b ENSGT00940000161327 ENSGT00940000154540.a ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521.l ENSGT00940000157641 Elapidae_a ANCESTRAL SPECIES 20 ENSGT00440000038159 ENSGT00960000192991 ENSGT00940000157044 ENSGT00390000001752 ENSGT00950000183122.B ENSGT00390000014189 ENSGT00390000006030.d.a.b ENSGT00940000161327 ENSGT00940000154540.a ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521.l ENSGT00940000157641 Acanthophiinae ANCESTRAL SPECIES 11 ENSGT00440000038159 ENSGT00960000192991 ENSGT00940000157044 ENSGT00390000001752 ENSGT00950000183122.B ENSGT00390000014189 ENSGT00390000006030.d.a.b ENSGT00940000161327 ENSGT00940000154540.a ENSGT00940000158479 ENSGT00940000156492 ENSGT00390000012719.a ENSGT00940000159095 ENSGT00940000157654 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00960000189835 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00960000191068 ENSGT00390000000699 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521.l ENSGT00940000157641 Eastern brown snake MODERN SPECIES 40 CHCHD2 (ENSPTXG00000004782) ENSPTXG00000004781 VKORC1L1 (ENSPTXG00000004780) GUSB (ENSPTXG00000004779) ASL (ENSPTXG00000004777) CRCP (ENSPTXG00000004776) TPST1 (ENSPTXG00000004774) KCTD7 (ENSPTXG00000004773) RABGEF1 (ENSPTXG00000004771) TMEM132E (ENSPTXG00000004750) LIG3 (ENSPTXG00000004746) RFFL (ENSPTXG00000004744) RAD51D (ENSPTXG00000004743) UNC45B (ENSPTXG00000003841) PEX12 (ENSPTXG00000003827) #21 AP2B1 (ENSPTXG00000003826) #22 RASL10B (ENSPTXG00000003825) #23 ENSPTXG00000003824 #24 MMP28 (ENSPTXG00000003814) #26 TAF15 (ENSPTXG00000003811) #27 ENSPTXG00000003809 RHBDD2 (ENSPTXG00000003806) POR (ENSPTXG00000003804) TMEM120A (ENSPTXG00000003800) ENSPTXG00000003794 MDH2 (ENSPTXG00000003791) HSPB1 (ENSPTXG00000003790) YWHAG (ENSPTXG00000003789) ENSPTXG00000003788 DTX2 (ENSPTXG00000003786) UPK3B (ENSPTXG00000003784) Mainland tiger snake MODERN SPECIES 44 LIG3 (ENSNSUG00000009329) RFFL (ENSNSUG00000009328) ENSNSUG00000009327 UNC45B (ENSNSUG00000009326) PEX12 (ENSNSUG00000009324) #21 AP2B1 (ENSNSUG00000009247) #22 RASL10B (ENSNSUG00000009246) #23 ENSNSUG00000009245 #24 ENSNSUG00000009244 MMP28 (ENSNSUG00000009243) #26 TAF15 (ENSNSUG00000009242) #27 ENSNSUG00000009241 RHBDD2 (ENSNSUG00000009240) POR (ENSNSUG00000009239) TMEM120A (ENSNSUG00000009238) ENSNSUG00000009228 MDH2 (ENSNSUG00000009227) HSPB1 (ENSNSUG00000009226) YWHAG (ENSNSUG00000009225) ENSNSUG00000009224 DTX2 (ENSNSUG00000009223) Indian cobra DUPLICATION Indian cobra MODERN SPECIES ENSNNAG00000014661 VKORC1L1 (ENSNNAG00000014647) GUSB (ENSNNAG00000014591) ASL (ENSNNAG00000014561) CRCP (ENSNNAG00000014523) ENSNNAG00000014509 TPST1 (ENSNNAG00000014478) KCTD7 (ENSNNAG00000014462) RABGEF1 (ENSNNAG00000014443) TMEM132E (ENSNNAG00000014391) RFFL (ENSNNAG00000014281) LIG3 (ENSNNAG00000014171) RAD51D (ENSNNAG00000014103) UNC45B (ENSNNAG00000014048) PEX12 (ENSNNAG00000014026) #21 AP2B1 (ENSNNAG00000013966) #22 RASL10B (ENSNNAG00000013950) #23 ENSNNAG00000013864 #24 ENSNNAG00000013856 #26 TAF15 (ENSNNAG00000013821) #27 ENSNNAG00000013812 ENSNNAG00000013799 POR (ENSNNAG00000013759) TMEM120A (ENSNNAG00000013725) ENSNNAG00000013666 MDH2 (ENSNNAG00000013654) HSPB1 (ENSNNAG00000013601) YWHAG (ENSNNAG00000013591) ENSNNAG00000013575 ENSNNAG00000013557 ENSNNAG00000013536 Indian cobra MODERN SPECIES 16 ENSNNAG00000008669 #22 ISG15 (ENSNNAG00000008685) P2RX2 (ENSNNAG00000008696) ENSNNAG00000008710 ENSNNAG00000008722 THOC5 (ENSNNAG00000008771) ENSNNAG00000009109 ENSNNAG00000009186 ENSNNAG00000009203 ENSNNAG00000009216 ENSNNAG00000009231 ENSNNAG00000009249 ENSNNAG00000009258 ENSNNAG00000009272 ENSNNAG00000009286 ENSNNAG00000009303 Anura ANCESTRAL SPECIES 78 ENSGT00940000159095 ENSGT00940000157654 ENSGT00950000185966 ENSGT00410000025651.A #20 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000156438 #27 ENSGT00940000165977 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00390000001189.b ENSGT00940000162625 ENSGT00940000155882.a.a ENSGT01090000260061.c.a.c.a ENSGT00940000160521 ENSGT00940000157641 Leishan spiny toad MODERN SPECIES 5 ENSLLEG00000012681 ENSLLEG00000012744 ENSLLEG00000012761 ENSLLEG00000012780 NLE1 (ENSLLEG00000012835) ULK2 (ENSLLEG00000012994) ALDH3A2 (ENSLLEG00000013573) ENSLLEG00000014121 ENSLLEG00000014135 RAD51D (ENSLLEG00000014152) ENSLLEG00000014238 UNC45B (ENSLLEG00000014260) ENSLLEG00000014519 ENSLLEG00000013946 #20 PEX12 (ENSLLEG00000014055) #21 AP2B1 (ENSLLEG00000014223) #22 RASL10B (ENSLLEG00000017561) #23 ENSLLEG00000017614 #24 MMP28 (ENSLLEG00000017649) #26 ENSLLEG00000017731 #27 ENSLLEG00000017939 ENSLLEG00000018044 POR (ENSLLEG00000018178) TMEM120A (ENSLLEG00000018475) ENSLLEG00000018599 MDH2 (ENSLLEG00000018761) ENSLLEG00000019151 ENSLLEG00000019299 ENSLLEG00000019381 ENSLLEG00000019433 SRRM3 (ENSLLEG00000019981) Frog MODERN SPECIES 2 tbx4 (ENSXETG00000010718) tbx2 (ENSXETG00000020557) bcas3 (ENSXETG00000020553) ppm1d (ENSXETG00000039122) appbp2 (ENSXETG00000013509) usp32 (ENSXETG00000013503) ca4.2 (ENSXETG00000034545) ca4.2 (ENSXETG00000013489) nle1 (ENSXETG00000013488) ulk2 (ENSXETG00000032595) aldh3a2 (ENSXETG00000013484) ENSXETG00000042714 ENSXETG00000039254 unc45b (ENSXETG00000013482) pex12 (ENSXETG00000013481) #21 ap2b1 (ENSXETG00000013480) #22 rasl10b (ENSXETG00000040968) #23 gas2l2 (ENSXETG00000037269) #24 mmp28 (ENSXETG00000013462) #26 taf15 (ENSXETG00000013477) #27 rhbdd2 (ENSXETG00000003427) por (ENSXETG00000008983) tmem120a (ENSXETG00000008980) styxl1 (ENSXETG00000008978) mdh2 (ENSXETG00000008976) acy3 (ENSXETG00000008975) srrm3 (ENSXETG00000031838) ENSXETG00000037033 hspb1 (ENSXETG00000008972) ywhag (ENSXETG00000008971) ssc4d (ENSXETG00000031843) Coelacanth MODERN SPECIES 342 ENSLACG00000012004 ENSLACG00000012251 ENSLACG00000012518 ABHD11 (ENSLACG00000013733) ENSLACG00000013897 ENSLACG00000014293 MTMR4 (ENSLACG00000014570) hpda (ENSLACG00000015263) HSF5 (ENSLACG00000015426) RNF43 (ENSLACG00000016277) SUPT4H1 (ENSLACG00000016364) ENSLACG00000016630 mpx (ENSLACG00000017046) ENSLACG00000017237 PEX12 (ENSLACG00000017305) #21 AP2B1 (ENSLACG00000017323) #22 RASL10B (ENSLACG00000017541) #23 ENSLACG00000017602 #24 ENSLACG00000017670 Actinopterygii ANCESTRAL SPECIES 158 ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00940000159596 #26 ENSGT00940000166275 ENSGT01070000257310 ENSGT00940000156847 ENSGT00390000007848.a ENSGT00940000164883 ENSGT00390000016686 ENSGT00940000154540.a ENSGT00940000161327 ENSGT00940000153594.d ENSGT00940000153253.b.a ENSGT00940000155974 Reedfish DUPLICATION Reedfish MODERN SPECIES 16 dhrs13a.2 (ENSECRG00000006310) ENSECRG00000006301 lhx1a (ENSECRG00000006292) aatf (ENSECRG00000006282) acaca (ENSECRG00000006072) brip1 (ENSECRG00000005923) tbx4 (ENSECRG00000005900) tbx2b (ENSECRG00000005886) bcas3 (ENSECRG00000005865) ppm1db (ENSECRG00000005851) appbp2 (ENSECRG00000005834) ENSECRG00000005814 USP6 (ENSECRG00000005775) ENSECRG00000005339 pex12 (ENSECRG00000005271) #21 ap2b1 (ENSECRG00000004865) #22 RASL10B (ENSECRG00000004757) #23 ENSECRG00000004746 #24 MMP28 (ENSECRG00000004734) #26 taf15 (ENSECRG00000004716) ENSECRG00000004702 ENSECRG00000004694 ENSECRG00000004683 porb (ENSECRG00000004667) tmem120ab (ENSECRG00000004643) ENSECRG00000004634 cyb5d2 (ENSECRG00000020888) ENSECRG00000020872 ENSECRG00000020861 ZZEF1 (ENSECRG00000020773) ATP2A3 (ENSECRG00000018836) Reedfish MODERN SPECIES 457 ENSECRG00000015938 #22 mif (ENSECRG00000015916) Neopterygii ANCESTRAL SPECIES 64 ENSGT00940000158605 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000173997 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00950000184414 ENSGT01100000264661 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000250264 ENSGT00940000154849.a #24 ENSGT00390000016686 ENSGT00940000164883 ENSGT00390000007848.a ENSGT00940000156847 ENSGT01070000257310 ENSGT00940000166275 ENSGT00940000159596 #26 ENSGT00940000161716 ENSGT00940000161811 ENSGT00940000163742 ENSGT00940000159751 ENSGT00950000183191.a.b Spotted gar MODERN SPECIES 661 rad51d (ENSLOCG00000002045) tmem248 (ENSLOCG00000002034) ENSLOCG00000002023 DOC2B (ENSLOCG00000002007) ENSLOCG00000001991 ENSLOCG00000001977 castor2 (ENSLOCG00000001947) rcc1l (ENSLOCG00000001933) ncf1 (ENSLOCG00000001899) polr2j (ENSLOCG00000001885) alkbh4 (ENSLOCG00000001872) lrwd1 (ENSLOCG00000001842) bckdk (ENSLOCG00000001821) orai2 (ENSLOCG00000001815) pex12 (ENSLOCG00000001797) #21 ap2b1 (ENSLOCG00000001756) #22 RASL10B (ENSLOCG00000001742) #23 ENSLOCG00000001720 #24 mdh2 (ENSLOCG00000001699) styxl1 (ENSLOCG00000001692) tmem120ab (ENSLOCG00000001667) porb (ENSLOCG00000001640) ENSLOCG00000001631 taf15 (ENSLOCG00000001615) MMP28 (ENSLOCG00000001596) #26 ENSLOCG00000001578 ENSLOCG00000001569 ENSLOCG00000001531 SH2B2 (ENSLOCG00000001510) bud23 (ENSLOCG00000001485) ENSLOCG00000001466 Osteoglossocephalai ANCESTRAL SPECIES 7 ENSGT00940000157641 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686 ENSGT00390000009588 ENSGT00390000015123 ENSGT00940000156805 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000154540.a ENSGT00940000161327 ENSGT00990000205101 ENSGT00940000162428 ENSGT01030000234627.a.a.c Osteoglossiformes ANCESTRAL SPECIES 27 ENSGT00940000157641 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00940000164393 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686 ENSGT00390000009588 ENSGT01030000235478 ENSGT00940000156805 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000154540.a.jb ENSGT00940000161327.a ENSGT00990000205101 ENSGT01030000234627.a.a.c ENSGT00390000014737 ENSGT00510000048685.g.b P. kingsleyae MODERN SPECIES 172 DOC2B (ENSPKIG00000012781) ENSPKIG00000012848 castor2 (ENSPKIG00000012878) rcc1l (ENSPKIG00000012917) ENSPKIG00000012950 ncf1 (ENSPKIG00000012970) ENSPKIG00000013014 alkbh4 (ENSPKIG00000013042) lrwd1 (ENSPKIG00000013065) bckdk (ENSPKIG00000013099) orai2 (ENSPKIG00000013121) pex12 (ENSPKIG00000013143) #21 ap2b1 (ENSPKIG00000013230) #22 RASL10B (ENSPKIG00000013373) #23 ENSPKIG00000013395 ENSPKIG00000013410 ENSPKIG00000013428 #24 mdh2 (ENSPKIG00000013451) ska2 (ENSPKIG00000013504) ENSPKIG00000013541 rad51c (ENSPKIG00000013565) ppm1e (ENSPKIG00000013604) TRIM37 (ENSPKIG00000013661) rabgef1 (ENSPKIG00000013738) kctd7 (ENSPKIG00000013797) ENSPKIG00000013828 STX1A (ENSPKIG00000013866) bud23 (ENSPKIG00000013949) Asian bonytongue MODERN SPECIES 17 dtx2 (ENSSFOG00015025780) tmem132e (ENSSFOG00015003128) lig3 (ENSSFOG00015003139) rad51d (ENSSFOG00015003182) tmem248 (ENSSFOG00015029199) DOC2B (ENSSFOG00015003225) castor2 (ENSSFOG00015003277) rcc1l (ENSSFOG00015003321) ncf1 (ENSSFOG00015003339) ENSSFOG00015027446 alkbh4 (ENSSFOG00015003376) lrwd1 (ENSSFOG00015003398) bckdk (ENSSFOG00015003411) orai2 (ENSSFOG00015028747) pex12 (ENSSFOG00015003439) #21 ap2b1 (ENSSFOG00015003461) #22 RASL10B (ENSSFOG00015003561) #23 ENSSFOG00015032719 ENSSFOG00015003592 #24 mdh2 (ENSSFOG00015003601) ska2 (ENSSFOG00015003616) rad51c (ENSSFOG00015031176) ppm1e (ENSSFOG00015003642) TRIM37 (ENSSFOG00015003665) rabgef1 (ENSSFOG00015003691) kctd7 (ENSSFOG00015026792) ENSSFOG00015003741 STX1A (ENSSFOG00015003754) bud23 (ENSSFOG00015003794) ENSSFOG00015024465 SH2B2 (ENSSFOG00015027937) Clupeocephala ANCESTRAL SPECIES 10 ENSGT00940000160149 ENSGT00940000153392.b.b ENSGT00390000005003 ENSGT00950000183012.B.a ENSGT00390000015063 ENSGT00530000063743.b ENSGT00530000063156.a.a.a ENSGT00390000018665 ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686 ENSGT00390000009588 ENSGT00390000015123 ENSGT00940000156805 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000154540.a ENSGT00940000161327 ENSGT00990000205101 ENSGT00980000200350 ENSGT00940000155435.A.a Euteleosteomorpha ANCESTRAL SPECIES 66 ENSGT00390000016584.c ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686 ENSGT00390000009588 ENSGT00390000015123 ENSGT00940000156805 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000154540.a ENSGT00940000161327 ENSGT00990000205101 ENSGT01030000234627.a.a.c ENSGT00390000014737 Acanthomorphata ANCESTRAL SPECIES ENSGT00940000155206 #22 Cod MODERN SPECIES 20 aldocb (ENSGMOG00000014744) ENSGMOG00000009355 ENSGMOG00000009374 ENSGMOG00000036487 ENSGMOG00000009385 ENSGMOG00000031701 ENSGMOG00000013521 ENSGMOG00000028176 ENSGMOG00000013572 POU4F3 (ENSGMOG00000013602) RBM27 (ENSGMOG00000013610) LARS1 (ENSGMOG00000013645) PLAC8L1 (ENSGMOG00000030987) ENSGMOG00000033965 kctd16b (ENSGMOG00000010480) ENSGMOG00000005184 #22 ENSGMOG00000005232 ENSGMOG00000000899 ENSGMOG00000000916 ENSGMOG00000029164 ENSGMOG00000030400 dpysl3 (ENSGMOG00000016771) ENSGMOG00000009543 stk10 (ENSGMOG00000002371) ENSGMOG00000016443 ENSGMOG00000028694 GABRB2 (ENSGMOG00000016364) GABRA6 (ENSGMOG00000000079) gabra1 (ENSGMOG00000035169) GABRG2 (ENSGMOG00000019333) ENSGMOG00000032819 Euacanthomorphacea ANCESTRAL SPECIES 19 ENSGT00940000154616.a.a ENSGT00940000157705 ENSGT00940000158478 ENSGT00940000175256 ENSGT00940000157670 ENSGT00390000015354.c.b.b ENSGT01030000234646.A ENSGT00940000154248.b ENSGT00390000006344 ENSGT00940000155772.a.b ENSGT00940000155838.f ENSGT00390000007848.a.d ENSGT00940000164883 ENSGT01060000252265 ENSGT00510000047471 ENSGT00940000155206 #22 Pinecone sodierfish MODERN SPECIES 5 ENSMMDG00005014638 zgc:152891 (ENSMMDG00005014647) ccdc90b (ENSMMDG00005014649) pcf11 (ENSMMDG00005014653) ncbp3 (ENSMMDG00005014655) ENSMMDG00005003643 ENSMMDG00005003711 alg8 (ENSMMDG00005003754) guca1d (ENSMMDG00005003951) stim1b (ENSMMDG00005003963) ENSMMDG00005004655 ENSMMDG00005004688 ENSMMDG00005004970 tmem120aa (ENSMMDG00005004972) mks1 (ENSMMDG00005005004) ap2b1 (ENSMMDG00005005847) #22 CUX1 (ENSMMDG00005006241) ENSMMDG00005006244 myl10 (ENSMMDG00005006248) zgc:171740 (ENSMMDG00005006254) Percomorphaceae ANCESTRAL SPECIES 40 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Tiger tail seahorse MODERN SPECIES 214 c2cd2l (ENSHCOG00000002152) h2ax (ENSHCOG00000002170) hspb9l (ENSHCOG00000002178) fam53c (ENSHCOG00000002185) slbp2 (ENSHCOG00000002192) zmat2 (ENSHCOG00000002199) lcp2a (ENSHCOG00000002220) ENSHCOG00000002240 ENSHCOG00000002248 mybbp1a (ENSHCOG00000002264) tbl2 (ENSHCOG00000002274) ENSHCOG00000002292 ENSHCOG00000002304 zw10 (ENSHCOG00000002315) mks1 (ENSHCOG00000002331) ap2b1 (ENSHCOG00000000069) #22 HEPACAM (ENSHCOG00000002403) tmem120aa (ENSHCOG00000002417) ENSHCOG00000002428 CBL (ENSHCOG00000002435) alkbh4 (ENSHCOG00000002438) lrwd1 (ENSHCOG00000002455) bckdk (ENSHCOG00000002480) Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a Percomorphaceae_C ANCESTRAL SPECIES 10 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a Percomorphaceae_D ANCESTRAL SPECIES 16 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00450000040326 ENSGT00940000155956.d ENSGT00950000183182.b ENSGT00940000154335.a ENSGT00940000164070.b ENSGT00390000013335 ENSGT00390000017209 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b.b ENSGT01100000263624 ENSGT00950000183026.B.c.b ENSGT00940000178002 ENSGT00940000155349.d ENSGT00390000000455.a Carangaria ANCESTRAL SPECIES 16 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00450000040326 ENSGT00940000155956.d ENSGT00950000183182.b ENSGT00940000154335.a ENSGT00940000164070.b ENSGT00390000013335 ENSGT00390000017209 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b.b ENSGT01100000263624 ENSGT00950000183026.B.c.b ENSGT00940000178002 ENSGT00940000155349.d ENSGT00390000000455.a Pleuronectoidei ANCESTRAL SPECIES 23 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00450000040326 ENSGT00940000155956.d ENSGT00950000183182.b ENSGT00940000154335.a ENSGT00940000164070.b ENSGT00390000013335 ENSGT00390000017209 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b.b ENSGT01100000263624 ENSGT00950000183026.B.c.b ENSGT00940000178002 ENSGT00940000155349.d ENSGT00390000000455.a Turbot MODERN SPECIES 16 ENSSMAG00000007811 ENSSMAG00000007876 ENSSMAG00000007915 ENSSMAG00000007928 ENSSMAG00000007938 ENSSMAG00000007982 ENSSMAG00000008010 ENSSMAG00000008162 ENSSMAG00000008168 ENSSMAG00000008179 ENSSMAG00000008223 ENSSMAG00000008234 ENSSMAG00000008260 ENSSMAG00000008269 ENSSMAG00000008286 ENSSMAG00000008453 #22 ENSSMAG00000008619 timm10b (ENSSMAG00000008679) ENSSMAG00000008684 smpd1 (ENSSMAG00000008712) tpte (ENSSMAG00000008728) fgl1b (ENSSMAG00000008785) ENSSMAG00000008805 vps36 (ENSSMAG00000008854) ENSSMAG00000008897 stoml3b (ENSSMAG00000008927) ENSSMAG00000008935 ENSSMAG00000008950 ENSSMAG00000008959 paxbp1 (ENSSMAG00000008983) ENSSMAG00000009001 Tongue sole MODERN SPECIES 10 KCNJ15 (ENSCSEG00000019759) SMG8 (ENSCSEG00000019761) ppm1e (ENSCSEG00000019766) TRIM37 (ENSCSEG00000019771) pou2f3 (ENSCSEG00000019794) slc37a2 (ENSCSEG00000019804) ENSCSEG00000019824 psmg1 (ENSCSEG00000019830) ENSCSEG00000019837 mybbp1a (ENSCSEG00000019839) tbl2 (ENSCSEG00000019845) ENSCSEG00000008809 ENSCSEG00000008822 zw10 (ENSCSEG00000008835) mks1 (ENSCSEG00000008865) ap2b1 (ENSCSEG00000008961) #22 HEPACAM (ENSCSEG00000009041) timm10b (ENSCSEG00000009076) ILK (ENSCSEG00000009080) smpd1 (ENSCSEG00000009104) tpte (ENSCSEG00000009147) fgl1b (ENSCSEG00000009160) ENSCSEG00000009174 vps36 (ENSCSEG00000009186) ENSCSEG00000009226 stoml3b (ENSCSEG00000009281) ENSCSEG00000009285 ENSCSEG00000009294 ENSCSEG00000009302 ENSCSEG00000009320 paxbp1 (ENSCSEG00000009346) Carangaria_A ANCESTRAL SPECIES 8 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00450000040326 ENSGT00940000155956.d ENSGT00950000183182.b ENSGT00940000154335.a ENSGT00940000164070.b ENSGT00390000013335 ENSGT00390000017209 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b.b ENSGT01100000263624 ENSGT00950000183026.B.c.b ENSGT00940000178002 ENSGT00940000155349.d ENSGT00390000000455.a Seriola ANCESTRAL SPECIES 2 ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT01080000257338.A.a.b ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00450000040326 ENSGT00940000155956.d ENSGT00950000183182.b ENSGT00940000154335.a ENSGT00940000164070.b ENSGT00390000013335 ENSGT00390000017209 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b.b ENSGT01100000263624 ENSGT00950000183026.B.c.b ENSGT00940000178002 ENSGT00940000155349.d ENSGT00390000000455.a Greater amberjack MODERN SPECIES 139 SMG8 (ENSSDUG00000001902) ppm1e (ENSSDUG00000001923) TRIM37 (ENSSDUG00000001973) pou2f3 (ENSSDUG00000002026) slc37a2 (ENSSDUG00000002097) ENSSDUG00000002141 psmg1 (ENSSDUG00000002153) ENSSDUG00000002165 ENSSDUG00000002170 mybbp1a (ENSSDUG00000002189) tbl2 (ENSSDUG00000002217) ENSSDUG00000002228 ENSSDUG00000002251 zw10 (ENSSDUG00000002280) mks1 (ENSSDUG00000002303) ap2b1 (ENSSDUG00000002587) #22 HEPACAM (ENSSDUG00000002732) timm10b (ENSSDUG00000002738) ILK (ENSSDUG00000002745) smpd1 (ENSSDUG00000002781) tpte (ENSSDUG00000002792) fgl1b (ENSSDUG00000002826) ENSSDUG00000002854 vps36 (ENSSDUG00000002865) ENSSDUG00000002916 stoml3b (ENSSDUG00000002948) ENSSDUG00000002982 ENSSDUG00000002992 SLC7A1 (ENSSDUG00000003020) paxbp1 (ENSSDUG00000003069) cadm2a (ENSSDUG00000003153) Yellowtail amberjack MODERN SPECIES 3035 ENSSLDG00000015023 pou2f3 (ENSSLDG00000015035) slc37a2 (ENSSLDG00000015065) ENSSLDG00000015128 psmg1 (ENSSLDG00000015144) ENSSLDG00000015166 ENSSLDG00000015171 mybbp1a (ENSSLDG00000015185) tbl2 (ENSSLDG00000015212) ENSSLDG00000015235 ENSSLDG00000015255 ENSSLDG00000015267 mks1 (ENSSLDG00000015282) ap2b1 (ENSSLDG00000015342) #22 HEPACAM (ENSSLDG00000015470) timm10b (ENSSLDG00000015490) ILK (ENSSLDG00000015508) smpd1 (ENSSLDG00000015532) tpte (ENSSLDG00000015552) fgl1b (ENSSLDG00000015620) ENSSLDG00000015603 vps36 (ENSSLDG00000015644) ENSSLDG00000015692 stoml3b (ENSSLDG00000015730) ENSSLDG00000015749 ENSSLDG00000015788 ENSSLDG00000015874 SLC7A1 (ENSSLDG00000015906) paxbp1 (ENSSLDG00000015952) Barramundi perch MODERN SPECIES 94 SMG8 (ENSLCAG00010011765) ppm1e (ENSLCAG00010011761) TRIM37 (ENSLCAG00010011559) pou2f3 (ENSLCAG00010011509) slc37a2 (ENSLCAG00010011229) ENSLCAG00010011166 psmg1 (ENSLCAG00010011164) ENSLCAG00010011161 mybbp1a (ENSLCAG00010011152) tbl2 (ENSLCAG00010011146) ENSLCAG00010011144 ENSLCAG00010011139 ENSLCAG00010011134 zw10 (ENSLCAG00010010794) mks1 (ENSLCAG00010010727) ap2b1 (ENSLCAG00010010708) #22 HEPACAM (ENSLCAG00010010686) timm10b (ENSLCAG00010010685) ILK (ENSLCAG00010010677) smpd1 (ENSLCAG00010010675) tpte (ENSLCAG00010010652) fgl1b (ENSLCAG00010010638) ENSLCAG00010010630 vps36 (ENSLCAG00010010616) ENSLCAG00010010604 stoml3b (ENSLCAG00010010601) ENSLCAG00010010598 ENSLCAG00010010596 SLC7A1 (ENSLCAG00010010592) paxbp1 (ENSLCAG00010010578) cadm2a (ENSLCAG00010010560) Anabantaria ANCESTRAL SPECIES 13 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00450000040326 ENSGT00940000155956.d ENSGT00950000183182.b ENSGT00940000154335.a ENSGT00940000164070.b ENSGT00390000013335 ENSGT00390000017209 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b.b ENSGT00950000183026.B.c.b ENSGT00940000178002 ENSGT00940000155349.d ENSGT00390000000455.a ENSGT00940000155947.b Anabantoidei ANCESTRAL SPECIES 12 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00450000040326 ENSGT00940000155956.d ENSGT00950000183182.b ENSGT00940000154335.a ENSGT00940000164070.b ENSGT00390000013335 ENSGT00390000017209 ENSGT00730000111188 ENSGT01030000234614.B.a.a.b.b ENSGT00950000183026.B.c.b ENSGT00940000178002 ENSGT00940000155349.d ENSGT00390000000455.a ENSGT00940000155947.b Climbing perch MODERN SPECIES 5 ENSATEG00000022532 ENSATEG00000022527 ENSATEG00000022511 ENSATEG00000022492 ENSATEG00000022470 ENSATEG00000022457 ENSATEG00000022424 ENSATEG00000022407 ENSATEG00000022391 ENSATEG00000022387 ENSATEG00000022367 ENSATEG00000022360 ENSATEG00000022350 ENSATEG00000022336 ENSATEG00000022323 ENSATEG00000022259 #22 ENSATEG00000022238 ENSATEG00000022223 ENSATEG00000022189 smpd1 (ENSATEG00000025614) tpte (ENSATEG00000022146) fgl1b (ENSATEG00000022162) ENSATEG00000022112 vps36 (ENSATEG00000022082) ENSATEG00000022061 stoml3b (ENSATEG00000022055) ENSATEG00000022018 ENSATEG00000021981 ENSATEG00000021957 ENSATEG00000021925 ENSATEG00000021902 Siamese fighting fish MODERN SPECIES 5 vps26c (ENSBSLG00000017850) ENSBSLG00000017838 SMG8 (ENSBSLG00000017828) ppm1e (ENSBSLG00000017810) TRIM37 (ENSBSLG00000017571) pou2f3 (ENSBSLG00000017521) slc37a2 (ENSBSLG00000016816) ENSBSLG00000016645 psmg1 (ENSBSLG00000016609) ENSBSLG00000015822 mybbp1a (ENSBSLG00000015640) tbl2 (ENSBSLG00000015601) ENSBSLG00000015589 zw10 (ENSBSLG00000014993) mks1 (ENSBSLG00000013914) ap2b1 (ENSBSLG00000013356) #22 ENSBSLG00000012670 ENSBSLG00000012669 ENSBSLG00000012666 ENSBSLG00000012663 ENSBSLG00000012658 HEPACAM (ENSBSLG00000012643) timm10b (ENSBSLG00000012642) ILK (ENSBSLG00000012632) smpd1 (ENSBSLG00000012623) tpte (ENSBSLG00000012498) fgl1b (ENSBSLG00000012484) ENSBSLG00000012477 vps36 (ENSBSLG00000012414) ENSBSLG00000012215 stoml3b (ENSBSLG00000011945) Zig-zag eel MODERN SPECIES 5 ENSMAMG00000019970 ENSMAMG00000019964 ENSMAMG00000019948 ENSMAMG00000019940 ENSMAMG00000019933 ENSMAMG00000019924 ENSMAMG00000019901 ENSMAMG00000019885 ENSMAMG00000019866 ENSMAMG00000019861 ENSMAMG00000019847 ENSMAMG00000019842 ENSMAMG00000019832 ENSMAMG00000019827 ENSMAMG00000019819 ENSMAMG00000019786 #22 ENSMAMG00000019785 ENSMAMG00000019778 ENSMAMG00000019739 ENSMAMG00000025567 ENSMAMG00000019719 ENSMAMG00000019713 ENSMAMG00000019696 dynll2b (ENSMAMG00000026482) srsf1b (ENSMAMG00000019691) pigs (ENSMAMG00000019682) aldocb (ENSMAMG00000019678) ENSMAMG00000019644 ENSMAMG00000019625 tmigd1 (ENSMAMG00000019618) slc47a1 (ENSMAMG00000019591) Eupercaria ANCESTRAL SPECIES 26 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a Tetraodontidae ANCESTRAL SPECIES 6 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00940000169096 ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00950000183064.b ENSGT00940000154465.C ENSGT01080000257365.b.a.b.a.a ENSGT00940000161327 ENSGT00390000008820.f ENSGT00390000012178 ENSGT00940000160619 ENSGT00910000144316 ENSGT00940000155027.c.b ENSGT00940000165564 ENSGT00940000163701.b.a.b.b.a ENSGT00940000161111 ENSGT00390000006633.a ENSGT00940000156690.e.a.b ENSGT00940000156690.e.a.a Tetraodon MODERN SPECIES 22 ENSTNIG00000007659 slc23a1 (ENSTNIG00000007658) mat2b (ENSTNIG00000007657) KCNJ15 (ENSTNIG00000000371) SMG8 (ENSTNIG00000007656) ppm1e (ENSTNIG00000007655) TRIM37 (ENSTNIG00000007654) pou2f3 (ENSTNIG00000007653) ENSTNIG00000007652 ENSTNIG00000007651 mybbp1a (ENSTNIG00000007650) tbl2 (ENSTNIG00000007649) ENSTNIG00000007648 zw10 (ENSTNIG00000007647) mks1 (ENSTNIG00000007646) ap2b1 (ENSTNIG00000007645) #22 vps26c (ENSTNIG00000007644) ENSTNIG00000000185 ENSTNIG00000007643 KCNJ6 (ENSTNIG00000007642) kctd7 (ENSTNIG00000007641) ENSTNIG00000007640 pgk1 (ENSTNIG00000007639) ENSTNIG00000007638 pgrmc1 (ENSTNIG00000007637) rab24 (ENSTNIG00000007636) ENSTNIG00000007635 ENSTNIG00000007634 fgfr4 (ENSTNIG00000007633) ponzr2 (ENSTNIG00000007632) HAND1 (ENSTNIG00000007631) Fugu MODERN SPECIES 6 KCNJ15 (ENSTRUG00000009300) SMG8 (ENSTRUG00000009229) ppm1e (ENSTRUG00000029181) TRIM37 (ENSTRUG00000008970) pou2f3 (ENSTRUG00000008839) slc37a2 (ENSTRUG00000002787) ENSTRUG00000026313 ENSTRUG00000025505 psmg1 (ENSTRUG00000002277) ENSTRUG00000021589 mybbp1a (ENSTRUG00000008378) ENSTRUG00000020908 ENSTRUG00000028414 zw10 (ENSTRUG00000007890) mks1 (ENSTRUG00000007554) ap2b1 (ENSTRUG00000007072) #22 vps26c (ENSTRUG00000006863) ENSTRUG00000006492 KCNJ6 (ENSTRUG00000006227) kctd7 (ENSTRUG00000006164) pgk1 (ENSTRUG00000005659) ENSTRUG00000023386 pgrmc1 (ENSTRUG00000005553) rab24 (ENSTRUG00000005407) ENSTRUG00000024629 fgfr4 (ENSTRUG00000004233) znf346 (ENSTRUG00000004159) ponzr2 (ENSTRUG00000021924) HAND1 (ENSTRUG00000023064) sap30l (ENSTRUG00000032871) GALNT10 (ENSTRUG00000000238) Eupecaria_A ANCESTRAL SPECIES 25 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a Ballan wrasse MODERN SPECIES 148 SMG8 (ENSLBEG00000007673) ppm1e (ENSLBEG00000007717) ENSLBEG00000007757 ENSLBEG00000007787 pou2f3 (ENSLBEG00000007831) slc37a2 (ENSLBEG00000007869) ENSLBEG00000007932 psmg1 (ENSLBEG00000007954) ENSLBEG00000007983 mybbp1a (ENSLBEG00000008013) tbl2 (ENSLBEG00000008058) ENSLBEG00000008165 ENSLBEG00000008224 zw10 (ENSLBEG00000008247) mks1 (ENSLBEG00000008290) ap2b1 (ENSLBEG00000008393) #22 ENSLBEG00000008495 HEPACAM (ENSLBEG00000008523) ENSLBEG00000008554 styxl1 (ENSLBEG00000008634) tmem120aa (ENSLBEG00000008651) ENSLBEG00000008726 CBL (ENSLBEG00000008819) alkbh4 (ENSLBEG00000008855) lrwd1 (ENSLBEG00000008881) bckdk (ENSLBEG00000008981) orai2 (ENSLBEG00000009283) USP28 (ENSLBEG00000009329) ENSLBEG00000009440 HTR3A (ENSLBEG00000009489) zbtb16a (ENSLBEG00000009528) Eupecaria_B ANCESTRAL SPECIES 25 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a Eupecaria_C ANCESTRAL SPECIES 32 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b ENSGT00940000156093.e.a Eupercaria_incertae_sedis ANCESTRAL SPECIES 20 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b ENSGT00940000156093.e.a European seabass MODERN SPECIES 4 ENSDLAG00005014900 ENSDLAG00005014895 ENSDLAG00005014792 ENSDLAG00005014749 ENSDLAG00005012833 ENSDLAG00005012785 ENSDLAG00005029079 ENSDLAG00005028665 ENSDLAG00005026439 ENSDLAG00005012402 ENSDLAG00005012388 ENSDLAG00005012370 ENSDLAG00005012326 ENSDLAG00005012011 ENSDLAG00005011842 ENSDLAG00005011687 #22 ENSDLAG00005011617 ENSDLAG00005028799 ENSDLAG00005011479 ENSDLAG00005011444 ENSDLAG00005010994 ENSDLAG00005010976 ENSDLAG00005010912 ENSDLAG00005032202 ENSDLAG00005026494 USP28 (ENSDLAG00005009252) ENSDLAG00005009202 HTR3A (ENSDLAG00005009191) zbtb16a (ENSDLAG00005031923) ncam1a (ENSDLAG00005007552) cadm1a (ENSDLAG00005007417) Large yellow croaker MODERN SPECIES 493 KCNJ15 (ENSLCRG00005016316) SMG8 (ENSLCRG00005016315) ppm1e (ENSLCRG00005016314) TRIM37 (ENSLCRG00005016312) pou2f3 (ENSLCRG00005016304) slc37a2 (ENSLCRG00005016276) ENSLCRG00005016275 psmg1 (ENSLCRG00005016273) ENSLCRG00005016271 mybbp1a (ENSLCRG00005016266) tbl2 (ENSLCRG00005016265) ENSLCRG00005016263 ENSLCRG00005016261 zw10 (ENSLCRG00005016257) mks1 (ENSLCRG00005015722) ap2b1 (ENSLCRG00005015672) #22 plekhb1 (ENSLCRG00005015666) sc5d (ENSLCRG00005015665) ENSLCRG00005015664 cadm1a (ENSLCRG00005015639) ncam1a (ENSLCRG00005014298) zbtb16a (ENSLCRG00005014289) HTR3A (ENSLCRG00005014249) HTR3B (ENSLCRG00005014248) USP28 (ENSLCRG00005013073) orai2 (ENSLCRG00005013052) bckdk (ENSLCRG00005013039) lrwd1 (ENSLCRG00005013031) alkbh4 (ENSLCRG00005013029) CBL (ENSLCRG00005012940) ENSLCRG00005012919 Gilthead seabream MODERN SPECIES 4 PPP2CA (ENSSAUG00010022977) skp1 (ENSSAUG00010022975) tcf7 (ENSSAUG00010022625) vdac1 (ENSSAUG00010022598) C5orf15 (ENSSAUG00010022596) fstl4 (ENSSAUG00010022544) RAPGEF6 (ENSSAUG00010017207) ENSSAUG00010016233 IRF-1 (ENSSAUG00010016214) slc22a4 (ENSSAUG00010016187) ENSSAUG00010016182 ENSSAUG00010016179 slc22a21 (ENSSAUG00010016177) ENSSAUG00010015959 mks1 (ENSSAUG00010015714) ap2b1 (ENSSAUG00010015453) #22 styxl1 (ENSSAUG00010015442) tmem120aa (ENSSAUG00010014087) HEPACAM (ENSSAUG00010013974) ENSSAUG00010013964 CBL (ENSSAUG00010013946) alkbh4 (ENSSAUG00010013937) lrwd1 (ENSSAUG00010013930) ENSSAUG00010013922 ddx51 (ENSSAUG00010013909) bckdk (ENSSAUG00010013833) orai2 (ENSSAUG00010013825) USP28 (ENSSAUG00010013587) HTR3B (ENSSAUG00010013576) HTR3A (ENSSAUG00010013486) zbtb16a (ENSSAUG00010013480) Perciformes ANCESTRAL SPECIES 26 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a Cottioidei ANCESTRAL SPECIES 10 ENSGT00940000156818 ENSGT00940000158185 ENSGT01030000234527.A.a.b.b.a ENSGT00940000153713.B.d ENSGT00940000163827.a.a.a.b ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Stickleback MODERN SPECIES 7 SH3PXD2B (ENSGACG00000020744) stk10 (ENSGACG00000020745) STK32A (ENSGACG00000020746) dpysl3 (ENSGACG00000020747) JAKMIP2 (ENSGACG00000020748) ENSGACG00000020749 slc37a2 (ENSGACG00000020750) ENSGACG00000020751 psmg1 (ENSGACG00000020752) ENSGACG00000020753 mybbp1a (ENSGACG00000020754) tbl2 (ENSGACG00000020755) ENSGACG00000020756 zw10 (ENSGACG00000020757) mks1 (ENSGACG00000020758) ap2b1 (ENSGACG00000020759) #22 HEPACAM (ENSGACG00000020760) tmem120aa (ENSGACG00000020761) ENSGACG00000020762 CBL (ENSGACG00000020763) alkbh4 (ENSGACG00000020764) lrwd1 (ENSGACG00000020765) bckdk (ENSGACG00000020766) orai2 (ENSGACG00000020767) USP28 (ENSGACG00000020768) HTR3B (ENSGACG00000020769) HTR3A (ENSGACG00000020770) zbtb16a (ENSGACG00000020771) ENSGACG00000020772 ncam1a (ENSGACG00000020773) ENSGACG00000020774 Perciformes_a ANCESTRAL SPECIES 28 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Channel bull blenny MODERN SPECIES 5 ncam1a (ENSCGOG00000003766) zbtb16a (ENSCGOG00000003651) HTR3A (ENSCGOG00000003639) ENSCGOG00000003633 USP28 (ENSCGOG00000002448) orai2 (ENSCGOG00000002399) lrwd1 (ENSCGOG00000002242) alkbh4 (ENSCGOG00000002223) CBL (ENSCGOG00000002179) ENSCGOG00000002165 tmem120aa (ENSCGOG00000002067) styxl1 (ENSCGOG00000002059) ENSCGOG00000002056 HEPACAM (ENSCGOG00000002051) mks1 (ENSCGOG00000001664) ap2b1 (ENSCGOG00000020102) #22 zw10 (ENSCGOG00000019455) ENSCGOG00000019445 ENSCGOG00000019443 tbl2 (ENSCGOG00000019439) mybbp1a (ENSCGOG00000019416) ENSCGOG00000019412 slc37a2 (ENSCGOG00000019408) pou2f3 (ENSCGOG00000019405) ENSCGOG00000019404 psmg1 (ENSCGOG00000019396) ENSCGOG00000019389 slc37a2 (ENSCGOG00000018592) pou2f3 (ENSCGOG00000018587) TRIM37 (ENSCGOG00000018570) SMG8 (ENSCGOG00000018565) Pike perch MODERN SPECIES 22 KCNJ15 (ENSSLUG00000017864) SMG8 (ENSSLUG00000017861) ppm1e (ENSSLUG00000017858) TRIM37 (ENSSLUG00000017094) pou2f3 (ENSSLUG00000016985) slc37a2 (ENSSLUG00000015656) ENSSLUG00000015511 psmg1 (ENSSLUG00000015503) ENSSLUG00000015496 mybbp1a (ENSSLUG00000015365) tbl2 (ENSSLUG00000015309) ENSSLUG00000015293 ENSSLUG00000015284 zw10 (ENSSLUG00000015128) mks1 (ENSSLUG00000014530) ap2b1 (ENSSLUG00000014074) #22 HEPACAM (ENSSLUG00000013843) ENSSLUG00000013814 ENSSLUG00000013800 styxl1 (ENSSLUG00000013786) tmem120aa (ENSSLUG00000013649) ENSSLUG00000013617 CBL (ENSSLUG00000013607) alkbh4 (ENSSLUG00000013601) lrwd1 (ENSSLUG00000013581) bckdk (ENSSLUG00000013381) orai2 (ENSSLUG00000013354) USP28 (ENSSLUG00000012849) ENSSLUG00000012775 HTR3A (ENSSLUG00000012772) zbtb16a (ENSSLUG00000012764) Ovalentaria ANCESTRAL SPECIES 11 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a Ovalentaria_B ANCESTRAL SPECIES 16 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Cichlidae ANCESTRAL SPECIES 4 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Pseudocrenilabrinae ANCESTRAL SPECIES 14 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Pseudocrenilabrinae_A ANCESTRAL SPECIES 22 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Haplochromini ANCESTRAL SPECIES 8 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Burton s mouthbrooder MODERN SPECIES 323 KCNJ15 (ENSHBUG00000019662) SMG8 (ENSHBUG00000019651) ppm1e (ENSHBUG00000019641) TRIM37 (ENSHBUG00000019626) pou2f3 (ENSHBUG00000019553) slc37a2 (ENSHBUG00000019485) ENSHBUG00000019384 psmg1 (ENSHBUG00000019379) ENSHBUG00000019340 mybbp1a (ENSHBUG00000019328) tbl2 (ENSHBUG00000019311) ENSHBUG00000019299 ENSHBUG00000019293 zw10 (ENSHBUG00000019283) mks1 (ENSHBUG00000019267) ap2b1 (ENSHBUG00000019245) #22 Haplochromini_A ANCESTRAL SPECIES 6 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00950000182996.b.b.c.b.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b P. nyererei MODERN SPECIES 514 vps26c (ENSPNYG00000008637) KCNJ15 (ENSPNYG00000008663) SMG8 (ENSPNYG00000008677) ppm1e (ENSPNYG00000008696) TRIM37 (ENSPNYG00000008710) ENSPNYG00000008733 pou2f3 (ENSPNYG00000008767) slc37a2 (ENSPNYG00000008880) psmg1 (ENSPNYG00000008960) ENSPNYG00000008989 mybbp1a (ENSPNYG00000009002) tbl2 (ENSPNYG00000009058) ENSPNYG00000009077 zw10 (ENSPNYG00000009110) mks1 (ENSPNYG00000009138) ap2b1 (ENSPNYG00000009344) #22 Haplochromini_B ANCESTRAL SPECIES 16 ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT01080000257342.G.a.b.d.b.b.b.b.a ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT01080000257365.b.a.a.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b ENSGT01050000245001.a.a.a.a.a.a Zebra mbuna MODERN SPECIES 1092 SMG8 (ENSMZEG00005009830) ppm1e (ENSMZEG00005009842) TRIM37 (ENSMZEG00005009850) pou2f3 (ENSMZEG00005009866) slc37a2 (ENSMZEG00005009885) ENSMZEG00005009945 psmg1 (ENSMZEG00005009949) ENSMZEG00005009955 ENSMZEG00005009959 ENSMZEG00005009963 tbl2 (ENSMZEG00005009976) ENSMZEG00005009987 ENSMZEG00005010000 zw10 (ENSMZEG00005010010) mks1 (ENSMZEG00005010023) ap2b1 (ENSMZEG00005010053) #22 HEPACAM (ENSMZEG00005010176) styxl1 (ENSMZEG00005010185) tmem120aa (ENSMZEG00005010196) ENSMZEG00005010230 CBL (ENSMZEG00005010282) alkbh4 (ENSMZEG00005010298) lrwd1 (ENSMZEG00005010320) bckdk (ENSMZEG00005010369) orai2 (ENSMZEG00005010395) USP28 (ENSMZEG00005010418) HTR3B (ENSMZEG00005010442) HTR3A (ENSMZEG00005010453) zbtb16a (ENSMZEG00005010471) ncam1a (ENSMZEG00005010503) ENSMZEG00005010641 Eastern happy MODERN SPECIES 1 SMG8 (ENSACLG00000016396) ppm1e (ENSACLG00000016422) TRIM37 (ENSACLG00000016442) pou2f3 (ENSACLG00000016532) slc37a2 (ENSACLG00000016565) ENSACLG00000016682 ENSACLG00000016703 ENSACLG00000016739 mybbp1a (ENSACLG00000016878) ENSACLG00000021108 tbl2 (ENSACLG00000021118) ENSACLG00000021138 ENSACLG00000021177 zw10 (ENSACLG00000021186) mks1 (ENSACLG00000021218) ap2b1 (ENSACLG00000021278) #22 HEPACAM (ENSACLG00000021482) ENSACLG00000021504 styxl1 (ENSACLG00000021522) tmem120aa (ENSACLG00000021536) ENSACLG00000021585 CBL (ENSACLG00000021678) alkbh4 (ENSACLG00000021695) lrwd1 (ENSACLG00000021705) bckdk (ENSACLG00000021728) ENSACLG00000021776 orai2 (ENSACLG00000021781) USP28 (ENSACLG00000021806) HTR3B (ENSACLG00000021873) HTR3A (ENSACLG00000021894) zbtb16a (ENSACLG00000021957) Lyretail cichlid MODERN SPECIES 297 ENSNBRG00000009727 vps26c (ENSNBRG00000009784) KCNJ15 (ENSNBRG00000009808) SMG8 (ENSNBRG00000009823) ppm1e (ENSNBRG00000009839) ENSNBRG00000009879 pou2f3 (ENSNBRG00000009898) ENSNBRG00000009924 psmg1 (ENSNBRG00000009960) ENSNBRG00000009966 mybbp1a (ENSNBRG00000009979) tbl2 (ENSNBRG00000010024) ENSNBRG00000010034 zw10 (ENSNBRG00000010068) mks1 (ENSNBRG00000010253) ap2b1 (ENSNBRG00000010453) #22 HEPACAM (ENSNBRG00000010553) styxl1 (ENSNBRG00000010624) tmem120aa (ENSNBRG00000010647) ENSNBRG00000010694 CBL (ENSNBRG00000010817) alkbh4 (ENSNBRG00000010872) lrwd1 (ENSNBRG00000010906) bckdk (ENSNBRG00000011012) orai2 (ENSNBRG00000011047) USP28 (ENSNBRG00000011079) HTR3B (ENSNBRG00000011109) HTR3A (ENSNBRG00000011137) zbtb16a (ENSNBRG00000011170) ncam1a (ENSNBRG00000011478) cadm1a (ENSNBRG00000012694) Nile tilapia MODERN SPECIES 1 vps26c (ENSONIG00000017347) SMG8 (ENSONIG00000017351) ppm1e (ENSONIG00000017353) TRIM37 (ENSONIG00000017355) pou2f3 (ENSONIG00000017361) slc37a2 (ENSONIG00000017365) ENSONIG00000017368 psmg1 (ENSONIG00000017369) ENSONIG00000033202 mybbp1a (ENSONIG00000017370) tbl2 (ENSONIG00000017374) ENSONIG00000017376 ENSONIG00000017379 zw10 (ENSONIG00000017380) mks1 (ENSONIG00000017381) ap2b1 (ENSONIG00000017385) #22 HEPACAM (ENSONIG00000009447) styxl1 (ENSONIG00000009449) tmem120aa (ENSONIG00000009452) ENSONIG00000009457 CBL (ENSONIG00000009458) alkbh4 (ENSONIG00000041679) lrwd1 (ENSONIG00000009466) bckdk (ENSONIG00000009468) orai2 (ENSONIG00000009473) USP28 (ENSONIG00000009476) htr3b (ENSONIG00000009486) HTR3A (ENSONIG00000009491) zbtb16a (ENSONIG00000009495) ENSONIG00000032583 ncam1a (ENSONIG00000009496) Midas cichlid MODERN SPECIES 741 vps26c (ENSACIG00000016228) KCNJ15 (ENSACIG00000016214) SMG8 (ENSACIG00000016203) ppm1e (ENSACIG00000016155) ENSACIG00000016144 ENSACIG00000016135 pou2f3 (ENSACIG00000016115) ENSACIG00000016064 ENSACIG00000016042 psmg1 (ENSACIG00000015995) ENSACIG00000015984 ENSACIG00000015865 ENSACIG00000015698 zw10 (ENSACIG00000015626) mks1 (ENSACIG00000015391) ap2b1 (ENSACIG00000015329) #22 Pomacentridae ANCESTRAL SPECIES 57 ENSGT00940000158479 ENSGT00940000157641 ENSGT00940000159414 ENSGT00940000159426 ENSGT00940000160785 ENSGT00390000015354.c.b.b ENSGT01030000234646.A ENSGT00940000154248.b ENSGT00390000006344 ENSGT00940000155772.a.b ENSGT00940000155838.f ENSGT00390000007848.a.d ENSGT00940000164883 ENSGT01100000263551.a.a ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00390000016427 ENSGT00940000153253.b.a ENSGT00390000013836 ENSGT00390000017457 ENSGT00390000012905.d ENSGT00500000044950 ENSGT00500000044966 ENSGT00940000158657 ENSGT00940000157627 ENSGT00410000025800 ENSGT00940000157884 ENSGT00390000018533 ENSGT00990000203615.b.a.a.a.b ENSGT00950000183064.b ENSGT00940000154465.C Pomacentridae_A ANCESTRAL SPECIES 85 ENSGT01100000263551.a.a ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00390000016427 ENSGT01080000257365.b.a.a.a ENSGT00940000154616.b ENSGT00940000153253.b.a ENSGT00390000013836 ENSGT00390000017457 ENSGT00390000012905.d ENSGT00500000044950 ENSGT00500000044966 ENSGT00940000158657 ENSGT00940000157627 ENSGT00410000025800 ENSGT00940000157884 ENSGT00390000018533 ENSGT00990000203615.b.a.a.a.b Amphiprion ANCESTRAL SPECIES 172 ENSGT01100000263551.a.a ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00390000016427 ENSGT00940000153253.b.a ENSGT00390000013836 ENSGT00390000017457 ENSGT00390000012905.d ENSGT00500000044950 ENSGT00500000044966 ENSGT00940000158657 ENSGT00940000157627 ENSGT00410000025800 ENSGT00940000157884 ENSGT00390000018533 ENSGT00990000203615.b.a.a.a.b ENSGT00950000183064.b ENSGT00940000154465.C Orange clownfish MODERN SPECIES 6 TRAPPC14 (ENSAPEG00000020688) zgc:152891 (ENSAPEG00000020719) rap1gap2b (ENSAPEG00000020770) ncbp3 (ENSAPEG00000020857) pcf11 (ENSAPEG00000020937) ccdc90b (ENSAPEG00000020984) alg8 (ENSAPEG00000021005) guca1d (ENSAPEG00000021077) ENSAPEG00000021098 stim1b (ENSAPEG00000021109) rhogb (ENSAPEG00000021143) pgap2 (ENSAPEG00000021159) ENSAPEG00000021172 HEPACAM (ENSAPEG00000021184) mks1 (ENSAPEG00000021223) ap2b1 (ENSAPEG00000021276) #22 zw10 (ENSAPEG00000021393) ENSAPEG00000021438 ENSAPEG00000021447 tbl2 (ENSAPEG00000021459) mybbp1a (ENSAPEG00000021477) ENSAPEG00000021504 psmg1 (ENSAPEG00000021511) ENSAPEG00000021528 slc37a2 (ENSAPEG00000021560) pou2f3 (ENSAPEG00000021617) ENSAPEG00000021641 ppm1e (ENSAPEG00000021664) SMG8 (ENSAPEG00000021735) KCNJ15 (ENSAPEG00000021754) vps26c (ENSAPEG00000021759) Clown anemonefish MODERN SPECIES 2901 HEPACAM (ENSAOCG00000010987) mks1 (ENSAOCG00000002612) ap2b1 (ENSAOCG00000010931) #22 Spiny chromis MODERN SPECIES 190 ENSAPOG00000020469 macroh2a1 (ENSAPOG00000020542) faxdc2 (ENSAPOG00000020587) LARP1 (ENSAPOG00000020685) zgc:56585 (ENSAPOG00000020734) zgc:56585 (ENSAPOG00000020740) HEPACAM (ENSAPOG00000020750) mks1 (ENSAPOG00000020830) ap2b1 (ENSAPOG00000020940) #22 zw10 (ENSAPOG00000000775) ENSAPOG00000020968 tbl2 (ENSAPOG00000020975) mybbp1a (ENSAPOG00000000974) ENSAPOG00000021000 psmg1 (ENSAPOG00000021010) ENSAPOG00000021029 slc37a2 (ENSAPOG00000021123) pou2f3 (ENSAPOG00000021171) TRIM37 (ENSAPOG00000021402) ppm1e (ENSAPOG00000021455) Bicolor damselfish MODERN SPECIES 659 tmem120aa (ENSSPAG00000022561) styxl1 (ENSSPAG00000022557) ENSSPAG00000022535 HEPACAM (ENSSPAG00000022530) mks1 (ENSSPAG00000022521) ap2b1 (ENSSPAG00000022491) #22 zw10 (ENSSPAG00000022475) ENSSPAG00000022472 ENSSPAG00000022461 tbl2 (ENSSPAG00000022458) mybbp1a (ENSSPAG00000022453) ENSSPAG00000022449 psmg1 (ENSSPAG00000022441) ENSSPAG00000022431 slc37a2 (ENSSPAG00000022406) pou2f3 (ENSSPAG00000022386) TRIM37 (ENSSPAG00000022363) ppm1e (ENSSPAG00000022351) SMG8 (ENSSPAG00000022345) ENSSPAG00000022339 vps26c (ENSSPAG00000022322) Atherinomorphae ANCESTRAL SPECIES 14 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Oryzias ANCESTRAL SPECIES 14 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b ENSGT00940000156093.e.a ENSGT00550000075101.q Oryzias_b ANCESTRAL SPECIES 13 ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00950000185259 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b ENSGT00940000156093.e.a ENSGT00550000075101.q Indian medaka MODERN SPECIES 4 KCNJ15 (ENSOMEG00000002852) SMG8 (ENSOMEG00000002847) ppm1e (ENSOMEG00000002835) ENSOMEG00000002824 ENSOMEG00000002805 pou2f3 (ENSOMEG00000002799) slc37a2 (ENSOMEG00000002775) ENSOMEG00000000053 ENSOMEG00000002718 ENSOMEG00000000051 mybbp1a (ENSOMEG00000002701) tbl2 (ENSOMEG00000002689) ENSOMEG00000002678 zw10 (ENSOMEG00000002657) mks1 (ENSOMEG00000002644) ap2b1 (ENSOMEG00000002625) #22 HEPACAM (ENSOMEG00000002587) tmem120aa (ENSOMEG00000002571) ENSOMEG00000001041 lrwd1 (ENSOMEG00000002529) CBL (ENSOMEG00000002516) alkbh4 (ENSOMEG00000002505) bckdk (ENSOMEG00000002498) orai2 (ENSOMEG00000002487) USP28 (ENSOMEG00000002475) ENSOMEG00000000648 HTR3A (ENSOMEG00000002452) zbtb16a (ENSOMEG00000002434) ncam1a (ENSOMEG00000002424) ENSOMEG00000002402 ENSOMEG00000002397 Javanese ricefish MODERN SPECIES 5 vps26c (ENSOJAG00000008163) KCNJ15 (ENSOJAG00000008158) SMG8 (ENSOJAG00000008152) ENSOJAG00000008133 ppm1e (ENSOJAG00000008124) TRIM37 (ENSOJAG00000008065) pou2f3 (ENSOJAG00000008034) ENSOJAG00000005693 ENSOJAG00000005480 ENSOJAG00000005432 ENSOJAG00000005423 ENSOJAG00000005323 ENSOJAG00000005311 zw10 (ENSOJAG00000005116) mks1 (ENSOJAG00000005025) ap2b1 (ENSOJAG00000004766) #22 HEPACAM (ENSOJAG00000004591) tmem120aa (ENSOJAG00000004417) ENSOJAG00000004377 CBL (ENSOJAG00000004198) alkbh4 (ENSOJAG00000004153) lrwd1 (ENSOJAG00000004121) bckdk (ENSOJAG00000003839) orai2 (ENSOJAG00000003752) USP28 (ENSOJAG00000003216) HTR3B (ENSOJAG00000003096) HTR3A (ENSOJAG00000003089) zbtb16a (ENSOJAG00000003079) ncam1a (ENSOJAG00000002758) cadm1a (ENSOJAG00000002600) sc5d (ENSOJAG00000002565) Oryzias_a ANCESTRAL SPECIES 2 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00390000012905.d ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b ENSGT00940000156093.e.a ENSGT00550000075101.q Japanese Medaka HdrR MODERN SPECIES 5 vps26c (ENSORLG00000014211) KCNJ15 (ENSORLG00000014220) SMG8 (ENSORLG00000014233) ppm1e (ENSORLG00000014237) TRIM37 (ENSORLG00000025211) pou2f3 (ENSORLG00000014257) slc37a2 (ENSORLG00000014295) ENSORLG00000014302 psmg1 (ENSORLG00000014314) ENSORLG00000025339 mybbp1a (ENSORLG00000014339) tbl2 (ENSORLG00000014368) ENSORLG00000014376 zw10 (ENSORLG00000014405) mks1 (ENSORLG00000014432) ap2b1 (ENSORLG00000014475) #22 ENSORLG00000014485 tmem120aa (ENSORLG00000014498) ENSORLG00000014510 ENSORLG00000014525 alkbh4 (ENSORLG00000025649) lrwd1 (ENSORLG00000014559) bckdk (ENSORLG00000014575) orai2 (ENSORLG00000014583) ENSORLG00000025543 USP28 (ENSORLG00000014609) ENSORLG00000014619 HTR3A (ENSORLG00000014631) zbtb16a (ENSORLG00000014640) ncam1a (ENSORLG00000014681) ENSORLG00000025108 Chinese medaka MODERN SPECIES 1004 ENSOSIG00000022642 vps26c (ENSOSIG00000022639) KCNJ15 (ENSOSIG00000022633) SMG8 (ENSOSIG00000022631) ppm1e (ENSOSIG00000022620) TRIM37 (ENSOSIG00000022601) pou2f3 (ENSOSIG00000022576) slc37a2 (ENSOSIG00000021985) psmg1 (ENSOSIG00000021847) ENSOSIG00000021842 mybbp1a (ENSOSIG00000021837) tbl2 (ENSOSIG00000021829) ENSOSIG00000021824 zw10 (ENSOSIG00000021769) mks1 (ENSOSIG00000021690) ap2b1 (ENSOSIG00000021672) #22 HEPACAM (ENSOSIG00000021637) ENSOSIG00000021626 CBL (ENSOSIG00000021516) alkbh4 (ENSOSIG00000021509) bckdk (ENSOSIG00000021436) USP28 (ENSOSIG00000021087) ENSOSIG00000021056 HTR3A (ENSOSIG00000021015) zbtb16a (ENSOSIG00000021001) ncam1a (ENSOSIG00000017708) cadm1a (ENSOSIG00000017497) sc5d (ENSOSIG00000017492) plekhb1 (ENSOSIG00000017484) TBCEL (ENSOSIG00000017479) TECTA (ENSOSIG00000017435) Cyprinodontiformes ANCESTRAL SPECIES 11 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00940000169096 ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000175256 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b Aplocheiloidei ANCESTRAL SPECIES 59 ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT01100000263551.a.a ENSGT00940000164883 ENSGT00390000007848.a.d ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00940000157670 ENSGT00940000158478 ENSGT00940000157705 ENSGT00940000154616.a.a ENSGT00940000155743.b ENSGT00940000156093.e.a Mangrove rivulus MODERN SPECIES 50 rab24 (ENSKMAG00000018779) ENSKMAG00000018731 ENSKMAG00000018693 fgfr4 (ENSKMAG00000018622) znf346 (ENSKMAG00000018586) zgc:56585 (ENSKMAG00000018562) LARP1 (ENSKMAG00000018468) faxdc2 (ENSKMAG00000018433) macroh2a1 (ENSKMAG00000018406) pitx1 (ENSKMAG00000018375) ENSKMAG00000018318 txndc15 (ENSKMAG00000018287) ENSKMAG00000018266 zw10 (ENSKMAG00000018219) mks1 (ENSKMAG00000018151) ap2b1 (ENSKMAG00000017993) #22 HEPACAM (ENSKMAG00000017945) styxl1 (ENSKMAG00000017915) tmem120aa (ENSKMAG00000017865) ENSKMAG00000017837 ENSKMAG00000017788 CBL (ENSKMAG00000017742) alkbh4 (ENSKMAG00000017732) lrwd1 (ENSKMAG00000017709) bckdk (ENSKMAG00000017680) orai2 (ENSKMAG00000017667) USP28 (ENSKMAG00000017634) HTR3B (ENSKMAG00000017606) HTR3A (ENSKMAG00000017587) zbtb16a (ENSKMAG00000017553) ncam1a (ENSKMAG00000017383) Turquoise killifish MODERN SPECIES 1620 znhit3 (ENSNFUG00015014967) pigw (ENSNFUG00015015372) ggnbp2 (ENSNFUG00015015389) DHRS11A (ENSNFUG00015015459) ENSNFUG00015015489 FLOT2 (ENSNFUG00015015572) ERAL1 (ENSNFUG00015015746) fam222ba (ENSNFUG00015015803) trpv1 (ENSNFUG00015015868) SHPK (ENSNFUG00015016521) emc6 (ENSNFUG00015016527) p2rx5 (ENSNFUG00015016547) ENSNFUG00015016586 zw10 (ENSNFUG00015016602) MKS1 (ENSNFUG00015016919) AP2B1 (ENSNFUG00015017314) #22 HEPACAM (ENSNFUG00015017506) ENSNFUG00015017548 DBN1 (ENSNFUG00015017576) BX927237.2 (ENSNFUG00015017766) GRK6 (ENSNFUG00015017890) NOP16 (ENSNFUG00015020776) ENSNFUG00015020777 ENSNFUG00015020782 WWC1 (ENSNFUG00015020792) RARS (ENSNFUG00015020885) ENSNFUG00015021045 ENSNFUG00015021051 SGCD (ENSNFUG00015021053) MRPL22 (ENSNFUG00015021063) ENSNFUG00015021067 Cyprinodontoidei ANCESTRAL SPECIES 5 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00940000169096 ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00940000164327.a ENSGT00940000159087 ENSGT00940000157342.c.b ENSGT00940000160014 ENSGT00940000157053.u.a ENSGT00980000199126 ENSGT01030000234513.A.a.b ENSGT00390000007635 ENSGT00950000182787.E.d.e.a ENSGT00940000163584.b.a.a ENSGT00940000159431 ENSGT00940000167475 ENSGT00940000158544 ENSGT00390000003426 ENSGT00940000160017 NAME_4 ANCESTRAL SPECIES 12 ENSGT00950000183064.b ENSGT00990000203615.b.a.a.a.b ENSGT00390000018533 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00940000169096 ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00940000164327.a ENSGT00940000159087 ENSGT00940000157342.c.b ENSGT00940000160014 ENSGT00940000157053.u.a ENSGT00390000007635 ENSGT00950000182787.E.d.e.a Sheepshead minnow MODERN SPECIES 400 ENSCVAG00000015288 pou2f3 (ENSCVAG00000015280) slc37a2 (ENSCVAG00000015272) ENSCVAG00000015176 psmg1 (ENSCVAG00000015165) ENSCVAG00000015163 ENSCVAG00000015154 ENSCVAG00000015095 zw10 (ENSCVAG00000015079) mks1 (ENSCVAG00000015069) ap2b1 (ENSCVAG00000015058) #22 ENSCVAG00000015001 ins (ENSCVAG00000014989) nipal4 (ENSCVAG00000014984) GRIA1 (ENSCVAG00000014977) ncf1 (ENSCVAG00000014928) st6gal1 (ENSCVAG00000014878) ENSCVAG00000014864 zgc:77151 (ENSCVAG00000014840) Mummichog MODERN SPECIES 2468 KCNJ15 (ENSFHEG00000020723) SMG8 (ENSFHEG00000020755) ppm1e (ENSFHEG00000020757) TRIM37 (ENSFHEG00000020775) pou2f3 (ENSFHEG00000020809) slc37a2 (ENSFHEG00000020900) ENSFHEG00000020912 ENSFHEG00000020918 ENSFHEG00000020928 mybbp1a (ENSFHEG00000020943) tbl2 (ENSFHEG00000020963) ENSFHEG00000020973 zw10 (ENSFHEG00000020984) ENSFHEG00000021001 mks1 (ENSFHEG00000021260) ap2b1 (ENSFHEG00000021342) #22 Poeciliinae ANCESTRAL SPECIES 26 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044966 ENSGT00500000044950 ENSGT00940000169096 ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00940000164327.a ENSGT00940000159087 ENSGT00940000157342.c.b ENSGT00940000160014 ENSGT00940000157053.u.a ENSGT01030000234513.A.a.b ENSGT00390000007635 ENSGT00950000182787.E.d.e.a ENSGT00940000163584.b.a.a ENSGT00940000159431 ENSGT00940000167475 ENSGT00940000158544 ENSGT00390000003426 ENSGT00940000160017 ENSGT00410000025556.a.a.a.a Platyfish MODERN SPECIES 2 pafah1b1b (ENSXMAG00000011253) CLUH (ENSXMAG00000011248) TRIM37 (ENSXMAG00000027341) pou2f3 (ENSXMAG00000019380) slc37a2 (ENSXMAG00000009494) ENSXMAG00000020920 ENSXMAG00000029558 ENSXMAG00000027950 ENSXMAG00000019785 mybbp1a (ENSXMAG00000024131) tbl2 (ENSXMAG00000013450) ENSXMAG00000013447 zw10 (ENSXMAG00000013415) mks1 (ENSXMAG00000013400) ENSXMAG00000024370 ap2b1 (ENSXMAG00000013363) #22 ins (ENSXMAG00000029742) tiprl (ENSXMAG00000021507) AMOT (ENSXMAG00000011507) ZPLD1 (ENSXMAG00000011531) ENSXMAG00000025333 dlg2 (ENSXMAG00000009448) BBX (ENSXMAG00000009457) ENSXMAG00000028762 HLCS (ENSXMAG00000009467) smfn (ENSXMAG00000021125) ENSXMAG00000022769 ENSXMAG00000001656 ENSXMAG00000022405 vps11 (ENSXMAG00000017073) hyou1 (ENSXMAG00000001626) Poecilia ANCESTRAL SPECIES 83 ENSGT00940000155156.b ENSGT00940000156527.c ENSGT00940000159055 ENSGT00940000175043 ENSGT00390000006659 ENSGT00410000025800 ENSGT00940000157627 ENSGT00940000158657 ENSGT00500000044950 ENSGT00940000169096 ENSGT00390000017457 ENSGT00390000013836 ENSGT00940000153253.b.a ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00940000164327.a ENSGT00940000159087 ENSGT00940000157342.c.b ENSGT00940000160014 ENSGT00940000157053.u.a ENSGT01030000234513.A.a.b ENSGT00390000007635 Guppy MODERN SPECIES 444 ZPLD1 (ENSPREG00000016557) AMOT (ENSPREG00000016596) ENSPREG00000016620 tiprl (ENSPREG00000016635) TRIM37 (ENSPREG00000016673) ENSPREG00000016708 pou2f3 (ENSPREG00000016725) slc37a2 (ENSPREG00000016796) psmg1 (ENSPREG00000016871) ENSPREG00000016889 mybbp1a (ENSPREG00000016920) tbl2 (ENSPREG00000017036) ENSPREG00000017146 zw10 (ENSPREG00000017175) mks1 (ENSPREG00000017218) ap2b1 (ENSPREG00000017396) #22 ins (ENSPREG00000017482) nipal4 (ENSPREG00000017493) GRIA1 (ENSPREG00000017532) ncf1 (ENSPREG00000017613) st6gal1 (ENSPREG00000017647) gjb7 (ENSPREG00000017671) ENSPREG00000017704 NAME_6 ANCESTRAL SPECIES 488 ENSGT00390000016427 ENSGT00510000047471 ENSGT00940000155206 #22 ENSGT00940000164327.a ENSGT00940000159087 Sailfin molly MODERN SPECIES 2315 ap2b1 (ENSPLAG00000005136) #22 ENSPLAG00000005351 nipal4 (ENSPLAG00000005373) Amazon molly DUPLICATION Amazon molly MODERN SPECIES 924 vaspa (ENSPFOG00000024244) smfn (ENSPFOG00000017861) ENSPFOG00000023235 ap2b1 (ENSPFOG00000017819) #22 ins (ENSPFOG00000017815) nipal4 (ENSPFOG00000017802) Amazon molly MODERN SPECIES 919 tiprl (ENSPFOG00000001161) ENSPFOG00000023495 ENSPFOG00000023323 ENSPFOG00000024791 ENSPFOG00000001205 zw10 (ENSPFOG00000001223) ENSPFOG00000023561 mks1 (ENSPFOG00000001296) ENSPFOG00000001443 #22 Protacanthopterygii ANCESTRAL SPECIES 51 ENSGT00390000005003 ENSGT00950000183012.B.a.g ENSGT00390000015063 ENSGT00530000063743.b ENSGT00530000063156.a.a.a ENSGT00390000018665 ENSGT00390000016584.c ENSGT00940000155838.f ENSGT00940000155772.a.b ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686 ENSGT00390000009588 ENSGT00390000015123 ENSGT00940000156805 ENSGT00940000157884 ENSGT00410000025800 ENSGT00940000154540.a ENSGT00940000161327.e ENSGT00990000205101 ENSGT01030000234627.a.a.c ENSGT00390000014737 ENSGT00510000048685.g.a Northern pike MODERN SPECIES 6 ENSELUG00000013349 nup88 (ENSELUG00000013334) rabep1 (ENSELUG00000013265) derl2 (ENSELUG00000013097) mis12 (ENSELUG00000013031) RNF26 (ENSELUG00000013018) ENSELUG00000012996 CBL (ENSELUG00000012919) polr2j (ENSELUG00000012822) alkbh4 (ENSELUG00000012802) lrwd1 (ENSELUG00000012779) ENSELUG00000028263 bckdk (ENSELUG00000012750) orai2 (ENSELUG00000029718) pex12 (ENSELUG00000012691) #21 ap2b1 (ENSELUG00000012648) #22 RASL10B (ENSELUG00000012540) #23 ENSELUG00000012517 ENSELUG00000012478 #24 mdh2 (ENSELUG00000012495) ska2 (ENSELUG00000012470) ENSELUG00000012439 rad51c (ENSELUG00000012402) ppm1e (ENSELUG00000012356) rabgef1 (ENSELUG00000012331) kctd7 (ENSELUG00000012219) STX1A (ENSELUG00000012188) SH2B2 (ENSELUG00000012142) CUX1 (ENSELUG00000012042) ENSELUG00000025189 ENSELUG00000011772 Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 121 ENSGT00500000044950.e ENSGT00940000153392.b.b ENSGT00390000005003.b ENSGT00950000183012.B.a.g.b ENSGT00390000015063.b ENSGT00530000063743.b.h ENSGT00530000063156.a.a.a.e ENSGT00390000018665 ENSGT00390000016584.c ENSGT00940000155838.f.f ENSGT00940000155772.a.b.a ENSGT00550000074975.c ENSGT01030000234646.A.f ENSGT00390000015354.c.b.b.m ENSGT01100000264661 ENSGT00940000155206.k.a #22 ENSGT00940000160764.f #23 ENSGT00390000016686.h.b ENSGT00390000009588.sb ENSGT01030000235478 ENSGT00940000156805.v ENSGT00940000157884.c ENSGT00410000025800.d ENSGT00940000154540.a.fb ENSGT00940000161327.e ENSGT00990000205101.a ENSGT00510000048685.g.b ENSGT00950000183191.a.b.i.b ENSGT00940000159751.j.a.a ENSGT00940000161811.e.b ENSGT00940000161716.gc.b Salmoninae_a ANCESTRAL SPECIES 55 ENSGT00500000044950.e ENSGT00940000153392.b.b ENSGT00390000005003.b ENSGT00950000183012.B.a.g.b ENSGT00390000015063.b ENSGT00530000063743.b.h ENSGT00530000063156.a.a.a.e ENSGT00390000018665 ENSGT00390000016584.c ENSGT00940000155838.f.f ENSGT00940000155772.a.b.a ENSGT00550000074975.c ENSGT01030000234646.A.f ENSGT00390000015354.c.b.b.m ENSGT01100000264661 ENSGT00940000155206.k.a #22 ENSGT00940000160764.f #23 ENSGT00390000016686.h.b ENSGT00390000009588.sb ENSGT00940000156805.v ENSGT00940000157884.c ENSGT00410000025800.d ENSGT00940000154540.a.fb ENSGT00940000161327.e.b ENSGT00990000205101.a ENSGT01030000234627.a.a.c ENSGT00510000048685.g.b ENSGT00950000183191.a.b.i.b ENSGT00940000159751.j.a.a ENSGT00940000161811.e.b ENSGT00940000155578.f.a Salmo ANCESTRAL SPECIES 44 ENSGT00940000162556.E.b.a ENSGT00500000044950.e ENSGT00940000153392.b.b ENSGT00390000005003.b ENSGT00950000183012.B.a.g.b ENSGT00390000015063.b ENSGT00530000063743.b.h ENSGT00530000063156.a.a.a.e ENSGT00390000018665 ENSGT00390000016584.c ENSGT00940000155838.f.f ENSGT00940000155772.a.b.a ENSGT00550000074975.c ENSGT01030000234646.A.f ENSGT00390000015354.c.b.b.m ENSGT00940000155206.k.a #22 ENSGT00940000160764.f #23 ENSGT00390000016686.h.b ENSGT00390000009588.sb ENSGT00940000156805.v ENSGT00940000157884.c ENSGT00410000025800.d ENSGT00940000154540.a.fb ENSGT00940000161327.e.b River trout MODERN SPECIES 6 ENSSTUG00000029562 psmg1 (ENSSTUG00000029573) upk3b (ENSSTUG00000029589) prkrip1 (ENSSTUG00000029609) ENSSTUG00000029616 nup88 (ENSSTUG00000029633) rabep1 (ENSSTUG00000029838) derl2 (ENSSTUG00000031462) mis12 (ENSSTUG00000031493) ENSSTUG00000031511 ENSSTUG00000031526 CBL (ENSSTUG00000002617) polr2j (ENSSTUG00000002891) bckdk (ENSSTUG00000002913) orai2 (ENSSTUG00000003106) ap2b1 (ENSSTUG00000003143) #22 RASL10B (ENSSTUG00000003422) #23 mdh2 (ENSSTUG00000003457) ska2 (ENSSTUG00000003986) rad51c (ENSSTUG00000004060) ppm1e (ENSSTUG00000004091) TRIM37 (ENSSTUG00000004161) rabgef1 (ENSSTUG00000005263) kctd7 (ENSSTUG00000005290) ENSSTUG00000005299 STX1A (ENSSTUG00000005310) ENSSTUG00000005461 SH2B2 (ENSSTUG00000005484) CUX1 (ENSSTUG00000005523) ENSSTUG00000005709 COL26A1 (ENSSTUG00000005720) Atlantic salmon MODERN SPECIES 4 ENSSSAG00000006943 ENSSSAG00000118721 prkrip1 (ENSSSAG00000101653) ENSSSAG00000097025 nup88 (ENSSSAG00000006973) rabep1 (ENSSSAG00000007026) ENSSSAG00000101415 mis12 (ENSSSAG00000113565) RNF26 (ENSSSAG00000098393) ENSSSAG00000007911 CBL (ENSSSAG00000096673) RPB11 (ENSSSAG00000007950) bckdk (ENSSSAG00000007966) orai2 (ENSSSAG00000008033) ENSSSAG00000119725 ap2b1 (ENSSSAG00000008072) #22 ENSSSAG00000008131 #23 ENSSSAG00000008143 ska2 (ENSSSAG00000008209) ENSSSAG00000120305 ENSSSAG00000115752 ppm1e (ENSSSAG00000008234) ENSSSAG00000008294 rabgef1 (ENSSSAG00000009512) kctd7 (ENSSSAG00000009563) ENSSSAG00000062833 ENSSSAG00000010167 SH2B2 (ENSSSAG00000010181) ENSSSAG00000010243 ENSSSAG00000115717 ENSSSAG00000097226 Oncorhynchus ANCESTRAL SPECIES 21 ENSGT00940000160202.b ENSGT00940000162556.E.b.a ENSGT00390000005003.b ENSGT00950000183012.B.a.g.b ENSGT00390000015063.b ENSGT00530000063743.b.h ENSGT00530000063156.a.a.a.e ENSGT00390000018665 ENSGT00390000016584.c ENSGT00940000155838.f.f ENSGT00940000155772.a.b.a ENSGT00550000074975.c ENSGT01030000234646.A.f ENSGT00390000015354.c.b.b.m ENSGT01100000264661 ENSGT00940000155206.k.a #22 ENSGT00940000160764.f #23 ENSGT00390000016686.h.b ENSGT00390000009588.sb ENSGT00940000156805.v ENSGT00940000157884.c ENSGT00410000025800.d ENSGT00940000154540.a.fb ENSGT00940000161327.e.b ENSGT00990000205101.a ENSGT01030000234627.a.a.c ENSGT00510000048685.g.b ENSGT00950000183191.a.b.i.b ENSGT00940000159751.j.a.a ENSGT00940000161811.e.b ENSGT00940000165137 Oncorhynchus_a ANCESTRAL SPECIES 19 ENSGT00940000160202.b ENSGT00940000162556.E.b.a ENSGT00390000005003.b ENSGT00950000183012.B.a.g.b ENSGT00390000015063.b ENSGT00530000063743.b.h ENSGT00530000063156.a.a.a.e ENSGT00390000018665 ENSGT00390000016584.c ENSGT00940000155838.f.f ENSGT00940000155772.a.b.a ENSGT00550000074975.c ENSGT01030000234646.A.f ENSGT00390000015354.c.b.b.m ENSGT01100000264661 ENSGT00940000155206.k.a #22 ENSGT00940000160764.f #23 ENSGT00390000016686.h.b ENSGT00390000009588.sb ENSGT00940000156805.v ENSGT00940000157884.c ENSGT00410000025800.d ENSGT00940000154540.a.fb ENSGT00940000161327.e.b ENSGT00990000205101.a ENSGT01030000234627.a.a.c ENSGT00510000048685.g.b ENSGT00950000183191.a.b.i.b ENSGT00940000159751.j.a.a ENSGT00940000161811.e.b ENSGT00940000165137 Coho salmon MODERN SPECIES 26 ETS2 (ENSOKIG00005042612) ENSOKIG00005042596 prkrip1 (ENSOKIG00005042589) ENSOKIG00005042580 nup88 (ENSOKIG00005042485) rabep1 (ENSOKIG00005042024) derl2 (ENSOKIG00005041967) mis12 (ENSOKIG00005041960) RNF26 (ENSOKIG00005041950) ENSOKIG00005041822 CBL (ENSOKIG00005041759) polr2j (ENSOKIG00005041720) bckdk (ENSOKIG00005041203) orai2 (ENSOKIG00005041171) ENSOKIG00005041135 ap2b1 (ENSOKIG00005040923) #22 RASL10B (ENSOKIG00005040891) #23 MDH2 (ENSOKIG00005040246) ENSOKIG00005040152 rad51c (ENSOKIG00005040070) ppm1e (ENSOKIG00005040061) TRIM37 (ENSOKIG00005038177) rabgef1 (ENSOKIG00005037990) ENSOKIG00005037971 kctd7 (ENSOKIG00005037573) ENSOKIG00005037488 ENSOKIG00005037432 CUX1 (ENSOKIG00005037327) ENSOKIG00005037280 ENSOKIG00005037271 MMP28 (ENSOKIG00005037255) #26 Chinook salmon MODERN SPECIES 33 erg (ENSOTSG00005004219) ETS2 (ENSOTSG00005004214) ENSOTSG00005004211 prkrip1 (ENSOTSG00005004209) ENSOTSG00005004205 nup88 (ENSOTSG00005003673) rabep1 (ENSOTSG00005001604) derl2 (ENSOTSG00005001593) mis12 (ENSOTSG00005001592) RNF26 (ENSOTSG00005001591) ENSOTSG00005001589 CBL (ENSOTSG00005001585) polr2j (ENSOTSG00005001540) bckdk (ENSOTSG00005000935) orai2 (ENSOTSG00005000791) ap2b1 (ENSOTSG00005045142) #22 RASL10B (ENSOTSG00005045141) #23 mdh2 (ENSOTSG00005045079) ska2 (ENSOTSG00005045077) rad51c (ENSOTSG00005045076) ppm1e (ENSOTSG00005045075) TRIM37 (ENSOTSG00005044794) rabgef1 (ENSOTSG00005044782) ENSOTSG00005044780 kctd7 (ENSOTSG00005044779) STX1A (ENSOTSG00005044778) ENSOTSG00005044776 SH2B2 (ENSOTSG00005044775) CUX1 (ENSOTSG00005044729) myl10 (ENSOTSG00005044724) ENSOTSG00005044722 Rainbow trout MODERN SPECIES 3 prkrip1 (ENSOMYG00000043628) ENSOMYG00000068435 ENSOMYG00000057641 ENSOMYG00000071326 nup88 (ENSOMYG00000043591) rabep1 (ENSOMYG00000042021) derl2 (ENSOMYG00000041904) ENSOMYG00000072278 mis12 (ENSOMYG00000041903) RNF26 (ENSOMYG00000041897) ENSOMYG00000041892 CBL (ENSOMYG00000041886) polr2j (ENSOMYG00000041882) bckdk (ENSOMYG00000041822) orai2 (ENSOMYG00000063111) ap2b1 (ENSOMYG00000041483) #22 ENSOMYG00000017119 #23 ENSOMYG00000041264 ENSOMYG00000063753 ENSOMYG00000070979 ENSOMYG00000041223 ENSOMYG00000057085 rad51c (ENSOMYG00000041221) ppm1e (ENSOMYG00000041218) TRIM37 (ENSOMYG00000040534) rabgef1 (ENSOMYG00000040417) kctd7 (ENSOMYG00000055063) ENSOMYG00000040386 ENSOMYG00000077535 ENSOMYG00000069503 ENSOMYG00000040069 Huchen MODERN SPECIES 60 psmg1 (ENSHHUG00000031748) upk3b (ENSHHUG00000031761) prkrip1 (ENSHHUG00000031779) ENSHHUG00000031791 nup88 (ENSHHUG00000031800) rabep1 (ENSHHUG00000031884) derl2 (ENSHHUG00000031974) mis12 (ENSHHUG00000032155) RNF26 (ENSHHUG00000032157) ENSHHUG00000032162 CBL (ENSHHUG00000032213) polr2j (ENSHHUG00000032225) bckdk (ENSHHUG00000032236) orai2 (ENSHHUG00000032371) ENSHHUG00000032375 ap2b1 (ENSHHUG00000032391) #22 RASL10B (ENSHHUG00000032576) #23 mdh2 (ENSHHUG00000032587) ska2 (ENSHHUG00000032796) ENSHHUG00000032823 rad51c (ENSHHUG00000032826) ppm1e (ENSHHUG00000032829) TRIM37 (ENSHHUG00000032836) rabgef1 (ENSHHUG00000032873) kctd7 (ENSHHUG00000032882) ENSHHUG00000033116 DNAJC30 (ENSHHUG00000033117) SH2B2 (ENSHHUG00000033126) ENSHHUG00000033135 ENSHHUG00000033144 ENSHHUG00000033149 Salmoninae ANCESTRAL SPECIES 161 ENSGT00500000044950.f ENSGT00390000005003.a ENSGT00950000183012.B.a.g.a ENSGT00390000015063.a ENSGT00530000063743.b.g ENSGT00530000063156.a.a.a.f ENSGT00940000155838.f.e ENSGT00940000155772.a.b.b ENSGT00550000074975.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.e ENSGT00390000015354.c.b.b.n ENSGT00390000016209 #21 ENSGT00940000155206.l #22 ENSGT00940000155206.k.b #22 ENSGT00940000160764.e #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686.h.a ENSGT00390000009588.rb ENSGT00390000015123 ENSGT00940000156805.u ENSGT00940000157884.d ENSGT00410000025800.c ENSGT00940000154540.a.gb ENSGT00940000161327.f.a.a ENSGT00990000205101.b ENSGT00390000015205.b ENSGT00950000183191.a.b.i.a ENSGT00940000159751.j.a.b Salmoninae_a ANCESTRAL SPECIES 4 ENSGT00500000044950.f ENSGT00390000005003.a ENSGT00950000183012.B.a.g.a ENSGT00390000015063.a ENSGT00530000063743.b.g ENSGT00530000063156.a.a.a.f ENSGT00990000211464 ENSGT00940000155838.f.e ENSGT00940000155772.a.b.b ENSGT00550000074975.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.e ENSGT00390000015354.c.b.b.n ENSGT00390000016209 #21 ENSGT00940000155206.k.b #22 ENSGT00940000160764.e #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686.h.a ENSGT00390000009588.rb ENSGT00390000015123 ENSGT00940000156805.u ENSGT00940000157884.d ENSGT00410000025800.c ENSGT00940000154540.a.gb ENSGT00940000161327.e.a ENSGT00990000205101.b ENSGT00390000015205.b ENSGT00950000183191.a.b.i.a ENSGT00940000159751.j.a.b Salmo ANCESTRAL SPECIES 17 ENSGT00500000044950.f ENSGT00390000005003.a ENSGT00950000183012.B.a.g.a ENSGT00390000015063.a ENSGT00530000063743.b.g ENSGT00530000063156.a.a.a.f ENSGT00990000211464 ENSGT00940000155838.f.e ENSGT00940000155772.a.b.b ENSGT00550000074975.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.e ENSGT00390000015354.c.b.b.n ENSGT00390000016209 #21 ENSGT00940000155206.k.b #22 ENSGT00940000160764.e #23 ENSGT00940000154849.a #24 ENSGT00390000016686.h.a ENSGT00390000009588.rb ENSGT00390000015123 ENSGT00940000156805.u ENSGT00940000157884.d ENSGT00410000025800.c ENSGT00940000154540.a.gb ENSGT00940000161327.e.a ENSGT00990000205101.b ENSGT00390000015205.b ENSGT00950000183191.a.b.i.a ENSGT00940000159751.j.a.b ENSGT00940000161811.f Atlantic salmon MODERN SPECIES 23 psmg1 (ENSSSAG00000066079) ENSSSAG00000094599 vps37d (ENSSSAG00000066075) nup88 (ENSSSAG00000065275) rabep1 (ENSSSAG00000064694) derl2 (ENSSSAG00000007893) ENSSSAG00000009879 ENSSSAG00000064621 ENSSSAG00000007934 polr2j (ENSSSAG00000064585) alkbh4 (ENSSSAG00000064584) lrwd1 (ENSSSAG00000064546) orai2 (ENSSSAG00000064297) bckdk (ENSSSAG00000064311) pex12 (ENSSSAG00000064295) #21 ap2b1 (ENSSSAG00000063935) #22 RASL10B (ENSSSAG00000112383) #23 ENSSSAG00000063924 #24 ENSSSAG00000063839 ENSSSAG00000063821 tex14 (ENSSSAG00000063788) ppm1e (ENSSSAG00000063769) trim37 (ENSSSAG00000062994) rabgef1 (ENSSSAG00000118068) kctd7 (ENSSSAG00000082747) ENSSSAG00000087758 ENSSSAG00000110676 ENSSSAG00000083016 ENSSSAG00000105157 SH2B2 (ENSSSAG00000062804) ENSSSAG00000062628 River trout MODERN SPECIES 10 prkrip1 (ENSSTUG00000017664) ENSSTUG00000017674 nup88 (ENSSTUG00000017702) rabep1 (ENSSTUG00000018241) derl2 (ENSSTUG00000019576) ENSSTUG00000019603 ENSSTUG00000002545 CBL (ENSSTUG00000002677) ENSSTUG00000002719 polr2j (ENSSTUG00000002725) alkbh4 (ENSSTUG00000002733) lrwd1 (ENSSTUG00000002753) bckdk (ENSSTUG00000002883) orai2 (ENSSTUG00000003156) pex12 (ENSSTUG00000003181) #21 ap2b1 (ENSSTUG00000003206) #22 RASL10B (ENSSTUG00000003463) #23 mdh2 (ENSSTUG00000003477) ENSSTUG00000003624 #24 ska2 (ENSSTUG00000003634) ENSSTUG00000003685 rad51c (ENSSTUG00000003734) ENSSTUG00000003754 ppm1e (ENSSTUG00000003760) TRIM37 (ENSSTUG00000003855) rabgef1 (ENSSTUG00000005319) kctd7 (ENSSTUG00000005363) ENSSTUG00000005619 exo5 (ENSSTUG00000005626) CUX1 (ENSSTUG00000005655) myl10 (ENSSTUG00000005719) Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00500000044950.f ENSGT00390000005003.a ENSGT00950000183012.B.a.g.a ENSGT00390000015063.a ENSGT00530000063743.b.g ENSGT00530000063156.a.a.a.f ENSGT00990000211464 ENSGT00940000155838.f.e ENSGT00940000155772.a.b.b ENSGT00550000074975.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.e ENSGT00390000015354.c.b.b.n ENSGT00390000016209 #21 ENSGT00940000155206.k.b #22 ENSGT00940000160764.e #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686.h.a ENSGT00390000009588.rb ENSGT00390000015123 ENSGT00940000156805.u ENSGT00940000157884.d ENSGT00410000025800.c ENSGT00940000154540.a.gb ENSGT00940000161327.e.a ENSGT00990000205101.b ENSGT00390000015205.b ENSGT00950000183191.a.b.i.a ENSGT00940000159751.j.a.b Rainbow trout MODERN SPECIES 1 ETS2 (ENSOMYG00000014204) ENSOMYG00000048904 psmg1 (ENSOMYG00000014245) ENSOMYG00000014279 nup88 (ENSOMYG00000056910) rabep1 (ENSOMYG00000014394) derl2 (ENSOMYG00000016490) ENSOMYG00000016499 ENSOMYG00000016513 ENSOMYG00000016597 alkbh4 (ENSOMYG00000016622) lrwd1 (ENSOMYG00000016633) bckdk (ENSOMYG00000016689) orai2 (ENSOMYG00000016752) pex12 (ENSOMYG00000016809) #21 ap2b1 (ENSOMYG00000016846) #22 RASL10B (ENSOMYG00000049745) #23 ENSOMYG00000017129 ENSOMYG00000017157 ENSOMYG00000051062 ENSOMYG00000017390 ENSOMYG00000017406 ENSOMYG00000058001 ENSOMYG00000017440 rad51c (ENSOMYG00000017453) ppm1e (ENSOMYG00000017467) TRIM37 (ENSOMYG00000017573) rabgef1 (ENSOMYG00000017786) kctd7 (ENSOMYG00000018001) ENSOMYG00000018035 ENSOMYG00000018047 Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00940000160202.a ENSGT00500000044950.f ENSGT00390000005003.a ENSGT00950000183012.B.a.g.a ENSGT00390000015063.a ENSGT00530000063743.b.g ENSGT00530000063156.a.a.a.f ENSGT00940000155838.f.e ENSGT00940000155772.a.b.b ENSGT00550000074975.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.e ENSGT00390000015354.c.b.b.n ENSGT00390000016209 #21 ENSGT00940000155206.k.b #22 ENSGT00940000160764.e #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686.h.a ENSGT00390000009588.rb ENSGT00390000015123 ENSGT00940000156805.u ENSGT00940000157884.d ENSGT00410000025800.c ENSGT00940000154540.a.gb ENSGT00940000161327.e.a ENSGT00990000205101.b ENSGT00390000015205.b ENSGT00950000183191.a.b.i.a ENSGT00940000159751.j.a.b Coho salmon MODERN SPECIES 20 KCNJ15 (ENSOKIG00005047399) ETS2 (ENSOKIG00005047385) psmg1 (ENSOKIG00005047368) ENSOKIG00005047363 ENSOKIG00005047346 rabep1 (ENSOKIG00005046844) derl2 (ENSOKIG00005046807) mis12 (ENSOKIG00005046787) ENSOKIG00005046744 CBL (ENSOKIG00005046732) alkbh4 (ENSOKIG00005046728) lrwd1 (ENSOKIG00005046697) bckdk (ENSOKIG00005046583) orai2 (ENSOKIG00005046569) pex12 (ENSOKIG00005046564) #21 ap2b1 (ENSOKIG00005046506) #22 RASL10B (ENSOKIG00005046494) #23 ENSOKIG00005046491 #24 mdh2 (ENSOKIG00005046400) ska2 (ENSOKIG00005046376) rad51c (ENSOKIG00005046357) ppm1e (ENSOKIG00005046350) TRIM37 (ENSOKIG00005046044) rabgef1 (ENSOKIG00005045990) kctd7 (ENSOKIG00005045975) STX1A (ENSOKIG00005045940) exo5 (ENSOKIG00005045932) SH2B2 (ENSOKIG00005045917) CUX1 (ENSOKIG00005045892) ENSOKIG00005045881 COL26A1 (ENSOKIG00005045870) Chinook salmon MODERN SPECIES 23 ETS2 (ENSOTSG00005032991) psmg1 (ENSOTSG00005032994) prkrip1 (ENSOTSG00005032995) ENSOTSG00005032996 nup88 (ENSOTSG00005032997) rabep1 (ENSOTSG00005033007) derl2 (ENSOTSG00005037969) ENSOTSG00005037974 CBL (ENSOTSG00005037978) polr2j (ENSOTSG00005037980) alkbh4 (ENSOTSG00005037981) lrwd1 (ENSOTSG00005037985) bckdk (ENSOTSG00005038000) orai2 (ENSOTSG00005038015) pex12 (ENSOTSG00005038016) #21 ap2b1 (ENSOTSG00005038017) #22 RASL10B (ENSOTSG00005038467) #23 ENSOTSG00005038468 mdh2 (ENSOTSG00005038470) ENSOTSG00005038944 #24 ska2 (ENSOTSG00005038951) ENSOTSG00005038970 rad51c (ENSOTSG00005038977) ppm1e (ENSOTSG00005038988) TRIM37 (ENSOTSG00005039010) rabgef1 (ENSOTSG00005040748) kctd7 (ENSOTSG00005040766) ENSOTSG00005040767 exo5 (ENSOTSG00005040768) SH2B2 (ENSOTSG00005040769) CUX1 (ENSOTSG00005040771) Huchen MODERN SPECIES 5591 ap2b1 (ENSHHUG00000014168) #22 Salmoninae ANCESTRAL SPECIES 161 ENSGT00500000044950.f ENSGT00390000005003.a ENSGT00950000183012.B.a.g.a ENSGT00390000015063.a ENSGT00530000063743.b.g ENSGT00530000063156.a.a.a.f ENSGT00940000155838.f.e ENSGT00940000155772.a.b.b ENSGT00550000074975.d ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.e ENSGT00390000015354.c.b.b.n ENSGT00390000016209 #21 ENSGT00940000155206.l #22 ENSGT00940000155206.k.b #22 ENSGT00940000160764.e #23 ENSGT01060000249314 ENSGT00940000154849.a #24 ENSGT00390000016686.h.a ENSGT00390000009588.rb ENSGT00390000015123 ENSGT00940000156805.u ENSGT00940000157884.d ENSGT00410000025800.c ENSGT00940000154540.a.gb ENSGT00940000161327.f.a.a ENSGT00990000205101.b ENSGT00390000015205.b ENSGT00950000183191.a.b.i.a Huchen DUPLICATION Huchen MODERN SPECIES 710 ENSHHUG00000052236 ENSHHUG00000052237 #22 RASL10B (ENSHHUG00000052238) #23 ENSHHUG00000052239 ENSHHUG00000052242 #24 mdh2 (ENSHHUG00000052245) ska2 (ENSHHUG00000052283) ENSHHUG00000052288 ENSHHUG00000052302 ENSHHUG00000052305 ppm1e (ENSHHUG00000052306) TRIM37 (ENSHHUG00000052307) rabgef1 (ENSHHUG00000052309) kctd7 (ENSHHUG00000052310) ENSHHUG00000052311 exo5 (ENSHHUG00000052312) ENSHHUG00000052313 Huchen MODERN SPECIES 935 ENSHHUG00000002529 psmg1 (ENSHHUG00000002503) prkrip1 (ENSHHUG00000002492) ENSHHUG00000002484 nup88 (ENSHHUG00000002223) rabep1 (ENSHHUG00000001843) derl2 (ENSHHUG00000001790) ENSHHUG00000001635 CBL (ENSHHUG00000001618) polr2j (ENSHHUG00000001538) alkbh4 (ENSHHUG00000001523) lrwd1 (ENSHHUG00000001461) bckdk (ENSHHUG00000001393) orai2 (ENSHHUG00000001291) pex12 (ENSHHUG00000001273) #21 ENSHHUG00000001263 #22 Otomorpha ANCESTRAL SPECIES 245 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00940000173997 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00440000037341.b.b Otophysi ANCESTRAL SPECIES 27 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00940000173997 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00440000037341.b.b ENSGT00390000017045 ENSGT00500000044869.a.b ENSGT00940000158431.a.a.a.a.b.a.c.b ENSGT00940000160330 ENSGT00940000175063 ENSGT00390000015077 ENSGT00990000203589.a.a ENSGT00390000018151 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00990000205129 ENSGT00940000153491.b.b.a Characiphysae ANCESTRAL SPECIES 56 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00940000173997 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00440000037341.b.b ENSGT00390000017045 ENSGT00940000158431.a.a.a.a.b.a.c.b ENSGT00940000160330 ENSGT00940000175063 ENSGT00390000015077 ENSGT00990000203589.a.a ENSGT00390000018151 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00990000205129 ENSGT00940000153491.b.b.a ENSGT00950000183135.A.a Channel catfish MODERN SPECIES 20 si:dkey-111e8.4 (ENSIPUG00000023927) lig3 (ENSIPUG00000023929) rad51d (ENSIPUG00000023931) tmem248 (ENSIPUG00000023933) DOC2B (ENSIPUG00000023936) gatsl2 (ENSIPUG00000023947) Wbscr16 (ENSIPUG00000023952) ncf1 (ENSIPUG00000023954) polr2j (ENSIPUG00000023960) alkbh4 (ENSIPUG00000023965) lrwd1 (ENSIPUG00000023966) bckdk (ENSIPUG00000023968) ENSIPUG00000023979 orai2 (ENSIPUG00000023980) pex12 (ENSIPUG00000023986) #21 ap2b1 (ENSIPUG00000023990) #22 rasl10b (ENSIPUG00000023998) #23 gas2l2 (ENSIPUG00000024002) #24 im:7138535 (ENSIPUG00000024006) HNRNPUL1 (ENSIPUG00000024012) SYMPK (ENSIPUG00000024020) rsph6a (ENSIPUG00000024030) napaa (ENSIPUG00000024032) ENSIPUG00000024050 ENSIPUG00000024052 EHD2 (ENSIPUG00000024057) selenow1 (ENSIPUG00000024060) akap10 (ENSIPUG00000024062) tmem211 (ENSIPUG00000024071) spata22 (ENSIPUG00000024074) c28h11orf54 (ENSIPUG00000024077) Characiphysae_b ANCESTRAL SPECIES 56 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00940000173997 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00440000037341.b.b ENSGT00390000017045 ENSGT00500000044869.a.b ENSGT00940000158431.a.a.a.a.b.a.c.b ENSGT00940000160330 ENSGT00940000175063 ENSGT00390000015077 ENSGT00990000203589.a.a ENSGT00390000018151 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00990000205129 ENSGT00940000153491.b.b.a Electric eel MODERN SPECIES 76 lig3 (ENSEEEG00000004349) rad51d (ENSEEEG00000004450) tmem248 (ENSEEEG00000004451) ENSEEEG00000004452 DOC2B (ENSEEEG00000004454) ENSEEEG00000004457 castor2 (ENSEEEG00000004463) rcc1l (ENSEEEG00000004464) ncf1 (ENSEEEG00000004471) polr2j (ENSEEEG00000004474) alkbh4 (ENSEEEG00000004476) lrwd1 (ENSEEEG00000004478) bckdk (ENSEEEG00000004484) orai2 (ENSEEEG00000004524) pex12 (ENSEEEG00000004526) #21 ap2b1 (ENSEEEG00000004531) #22 RASL10B (ENSEEEG00000004544) #23 ENSEEEG00000004545 #24 im:7138535 (ENSEEEG00000004546) HNRNPUL1 (ENSEEEG00000004548) SYMPK (ENSEEEG00000004564) RSPH6A (ENSEEEG00000004754) napaa (ENSEEEG00000004774) ENSEEEG00000004886 ENSEEEG00000004887 EHD2 (ENSEEEG00000004888) ENSEEEG00000005021 AKAP10 (ENSEEEG00000005032) ENSEEEG00000005313 ENSEEEG00000005314 zgc:85789 (ENSEEEG00000005323) Characoidei ANCESTRAL SPECIES 39 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00440000037341.b.b ENSGT00390000017045 ENSGT00500000044869.a.b ENSGT00940000158431.a.a.a.a.b.a.c.b ENSGT00940000161069 ENSGT00390000015077 ENSGT00990000203589.a.a ENSGT00390000018151 ENSGT00390000017214 ENSGT00390000001189.a ENSGT00990000205129 ENSGT00940000153491.b.b.a ENSGT00950000183135.A.a Mexicana tetra MODERN SPECIES 18 dpf2 (ENSAMXG00000001974) cdc42ep2 (ENSAMXG00000001976) SPTBN2 (ENSAMXG00000001980) LTBP3 (ENSAMXG00000001998) DOC2B (ENSAMXG00000007495) ENSAMXG00000040724 castor2 (ENSAMXG00000007497) rcc1l (ENSAMXG00000007501) ncf1 (ENSAMXG00000007506) polr2j (ENSAMXG00000007517) alkbh4 (ENSAMXG00000038965) lrwd1 (ENSAMXG00000007532) bckdk (ENSAMXG00000032682) orai2 (ENSAMXG00000007568) pex12 (ENSAMXG00000043916) #21 ap2b1 (ENSAMXG00000013533) #22 RASL10B (ENSAMXG00000040751) #23 ENSAMXG00000041735 #24 ENSAMXG00000042764 #24 im:7138535 (ENSAMXG00000042035) HNRNPUL1 (ENSAMXG00000013644) SYMPK (ENSAMXG00000013677) RSPH6A (ENSAMXG00000013707) napaa (ENSAMXG00000042669) ENSAMXG00000013722 EHD2 (ENSAMXG00000013748) selenow1 (ENSAMXG00000042466) AKAP10 (ENSAMXG00000033348) ENSAMXG00000026322 ENSAMXG00000038823 zgc:85789 (ENSAMXG00000013791) Red-bellied piranha MODERN SPECIES 2 selenow1 (ENSPNAG00000016995) EHD2 (ENSPNAG00000016978) ENSPNAG00000016953 napaa (ENSPNAG00000016904) RSPH6A (ENSPNAG00000016832) castor2 (ENSPNAG00000016806) rcc1l (ENSPNAG00000005877) ENSPNAG00000016703 ncf1 (ENSPNAG00000016649) polr2j (ENSPNAG00000016595) alkbh4 (ENSPNAG00000005629) lrwd1 (ENSPNAG00000016556) bckdk (ENSPNAG00000016545) orai2 (ENSPNAG00000016537) pex12 (ENSPNAG00000016524) #21 ap2b1 (ENSPNAG00000016516) #22 SYMPK (ENSPNAG00000016505) DOC2B (ENSPNAG00000016487) tmem248 (ENSPNAG00000016443) rad51d (ENSPNAG00000016418) lig3 (ENSPNAG00000016405) tmem132e (ENSPNAG00000016294) ENSPNAG00000016282 dtx2 (ENSPNAG00000003410) GTF2IRD1 (ENSPNAG00000016193) CLIP2 (ENSPNAG00000016097) rasa4 (ENSPNAG00000016000) upk3b (ENSPNAG00000015903) prkrip1 (ENSPNAG00000015892) ENSPNAG00000015881 nup88 (ENSPNAG00000015864) Cyprinoidei ANCESTRAL SPECIES 37 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00940000173997.a ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00390000017045 ENSGT00500000044869.a.b ENSGT00940000158431.a.a.a.a.b.a.c.b ENSGT00940000160330 ENSGT00940000175063 ENSGT00390000015077 ENSGT00990000203589.a.a ENSGT00390000018151 ENSGT00390000017214 ENSGT00990000210050 ENSGT00390000001189.a ENSGT00940000153491.b.b.a ENSGT00950000183135.A.a Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 21 ENSGT00940000158479.d ENSGT00940000156492.i ENSGT00940000159095.i ENSGT00940000153883.b.g ENSGT00940000156758.`b.a.a.b ENSGT00940000173997.a ENSGT00940000156758.`b.a.b ENSGT00390000006208.a.g ENSGT00940000157317.p ENSGT00940000160014.b ENSGT00550000074975.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.c ENSGT00390000015354.c.b.b.t ENSGT00940000155206.m #22 ENSGT00940000160764.d #23 ENSGT00940000154849.a.f #24 ENSGT00440000037341.b.b.d ENSGT00940000157823.jb.a ENSGT00950000182946.lb.a.f ENSGT00390000017045.m ENSGT00500000044869.a.b.q ENSGT00390000005826.a.a.l.a ENSGT00940000158431.a.a.a.a.b.a.c.b.f ENSGT00940000160330.j ENSGT00940000159256.o.o.b ENSGT00940000161069.a.a ENSGT00390000015077.h ENSGT00990000203589.a.a.d ENSGT00390000018151.e Cyprininae_a ANCESTRAL SPECIES 75 ENSGT00940000156492.i ENSGT00940000159095.i.b ENSGT00940000153883.b.g ENSGT00940000156758.`b.a.a.b ENSGT00940000173997.a ENSGT00940000156758.`b.a.b ENSGT00390000006208.a.g ENSGT00940000157317.p ENSGT00940000160014.b ENSGT00550000074975.b ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A.c ENSGT00390000015354.c.b.b.t ENSGT00390000016209.i #21 ENSGT00940000155206.m #22 ENSGT00940000160764.d #23 ENSGT00940000154849.a.f #24 ENSGT00440000037341.b.b.d ENSGT00940000157823.jb.a ENSGT00950000182946.lb.a.f.a ENSGT00390000017045.m ENSGT00500000044869.a.b.q ENSGT00390000005826.a.a.l.a ENSGT00940000158431.a.a.a.a.b.a.c.b.f ENSGT00940000160330.j ENSGT00940000159256.o.o.b ENSGT00940000161069.a.a ENSGT00390000015077.h ENSGT00990000203589.a.a.d ENSGT00390000018151.e Golden-line barbel MODERN SPECIES 94 lig3 (ENSSGRG00000038039) rad51d (ENSSGRG00000037976) tmem248 (ENSSGRG00000037975) ENSSGRG00000037911 castor2 (ENSSGRG00000037898) rcc1l (ENSSGRG00000037893) polr2j (ENSSGRG00000037887) alkbh4 (ENSSGRG00000037884) lrwd1 (ENSSGRG00000037883) bckdk (ENSSGRG00000037882) orai2 (ENSSGRG00000037881) pex12 (ENSSGRG00000037879) #21 ENSSGRG00000037878 ap2b1 (ENSSGRG00000032854) #22 RASL10B (ENSSGRG00000032813) #23 ENSSGRG00000032812 #24 im:7138535 (ENSSGRG00000032811) ENSSGRG00000032809 SYMPK (ENSSGRG00000031746) ENSSGRG00000031739 napaa (ENSSGRG00000031417) ENSSGRG00000031412 EHD2 (ENSSGRG00000031275) selenow1 (ENSSGRG00000031271) AKAP10 (ENSSGRG00000031205) ENSSGRG00000031195 ENSSGRG00000031193 ENSSGRG00000031192 zgc:85789 (ENSSGRG00000031159) Common carp reference MODERN SPECIES 7 ENSCCRG00000074686 tmem132e (ENSCCRG00000046437) lig3 (ENSCCRG00000077154) rad51d (ENSCCRG00000070560) tmem248 (ENSCCRG00000028402) ENSCCRG00000058946 ENSCCRG00000025155 castor2 (ENSCCRG00000065176) rcc1l (ENSCCRG00000044998) ncf1 (ENSCCRG00000044938) polr2j (ENSCCRG00000044891) lrwd1 (ENSCCRG00000077882) bckdk (ENSCCRG00000067181) orai2 (ENSCCRG00000039011) pex12 (ENSCCRG00000044463) #21 ap2b1 (ENSCCRG00000042700) #22 RASL10B (ENSCCRG00000015525) #23 ENSCCRG00000015509 im:7138535 (ENSCCRG00000021102) ENSCCRG00000054409 ENSCCRG00000015495 ENSCCRG00000015311 napaa (ENSCCRG00000015245) ENSCCRG00000068304 ENSCCRG00000072568 selenow1 (ENSCCRG00000014951) ENSCCRG00000014943 ENSCCRG00000076793 ENSCCRG00000025384 zgc:85789 (ENSCCRG00000025392) aspa (ENSCCRG00000066540) Cyprininae ANCESTRAL SPECIES 162 ENSGT00940000157641.n ENSGT00940000158479.c ENSGT00940000156492.j ENSGT00940000159095.j ENSGT00940000153883.b.h ENSGT00940000156758.ab ENSGT00940000164249.b.a.b.a.a.k.b.a.b ENSGT00390000006208.a.h ENSGT00940000157317.o ENSGT00940000160014.a ENSGT00550000074975.a ENSGT01030000234646.A.d ENSGT00390000015354.c.b.b.s ENSGT00390000016209 #21 ENSGT00950000184414 ENSGT00940000155206.n #22 ENSGT00940000160764.c #23 ENSGT00940000154849.a.e #24 ENSGT00440000037341.b.b.c ENSGT00940000157823.jb.b ENSGT00390000017045.n ENSGT00500000044869.a.b.r ENSGT00390000005826.a.a.l.b ENSGT00940000158431.a.a.a.a.b.a.c.b.e ENSGT00940000160330.i ENSGT00940000159256.o.o.a ENSGT00940000175063 ENSGT00940000161069.a.b ENSGT00390000015077.g ENSGT00990000203589.a.a.c ENSGT00970000197451 Goldfish MODERN SPECIES 23 tmem248 (ENSCARG00000018347) ENSCARG00000018339 DOC2B (ENSCARG00000018302) ENSCARG00000018280 ENSCARG00000018267 castor2 (ENSCARG00000018235) rcc1l (ENSCARG00000018169) ncf1 (ENSCARG00000018119) alkbh4 (ENSCARG00000018109) ENSCARG00000018101 ENSCARG00000018095 bckdk (ENSCARG00000017894) orai2 (ENSCARG00000017831) pex12 (ENSCARG00000017825) #21 ENSCARG00000017823 ap2b1 (ENSCARG00000017782) #22 RASL10B (ENSCARG00000017758) #23 ENSCARG00000017753 #24 im:7138535 (ENSCARG00000017729) HNRNPUL1 (ENSCARG00000016799) napaa (ENSCARG00000016732) ENSCARG00000016727 ENSCARG00000016721 EHD2 (ENSCARG00000016717) selenow1 (ENSCARG00000016709) AKAP10 (ENSCARG00000016645) ENSCARG00000016632 ENSCARG00000016626 ENSCARG00000016614 ENSCARG00000016603 ENSCARG00000016597 Cyprininae_a ANCESTRAL SPECIES ENSGT00940000157641.n ENSGT00940000158479.c ENSGT00940000156492.j ENSGT00940000159095.j ENSGT00940000153883.b.h ENSGT00940000156758.ab ENSGT00940000164249.b.a.b.a.a.k.b.a.b ENSGT00390000006208.a.h ENSGT00940000157317.o ENSGT00940000160014.a ENSGT00550000074975.a ENSGT01030000234646.A.d ENSGT00390000015354.c.b.b.s ENSGT00390000016209.j #21 ENSGT00950000184414 ENSGT00940000155206.n #22 ENSGT00940000160764.c #23 ENSGT00940000154849.a.e #24 ENSGT00440000037341.b.b.c ENSGT00940000157823.jb.b ENSGT00390000017045.n ENSGT00500000044869.a.b.r ENSGT00390000005826.a.a.l.b ENSGT00940000158431.a.a.a.a.b.a.c.b.e ENSGT00940000160330.i ENSGT00940000159256.o.o.a ENSGT00940000175063 ENSGT00390000015077.g ENSGT00990000203589.a.a.c ENSGT00970000197451 ENSGT00990000210050 Common carp reference MODERN SPECIES 15 rad51d (ENSCCRG00000007852) tmem248 (ENSCCRG00000045259) ENSCCRG00000066524 ENSCCRG00000078764 ENSCCRG00000062611 ENSCCRG00000074614 ENSCCRG00000063378 castor2 (ENSCCRG00000061193) rcc1l (ENSCCRG00000025141) ncf1 (ENSCCRG00000024131) polr2j (ENSCCRG00000065810) alkbh4 (ENSCCRG00000024113) bckdk (ENSCCRG00000055540) orai2 (ENSCCRG00000071195) ENSCCRG00000071680 ap2b1 (ENSCCRG00000050537) #22 ENSCCRG00000050518 ENSCCRG00000082263 #23 ENSCCRG00000058460 ENSCCRG00000073075 #24 ENSCCRG00000015486 ENSCCRG00000014517 ENSCCRG00000075038 ENSCCRG00000071080 napaa (ENSCCRG00000014544) ENSCCRG00000075265 EHD2 (ENSCCRG00000014928) ENSCCRG00000007726 ENSCCRG00000062815 ENSCCRG00000082713 ENSCCRG00000060567 Golden-line barbel MODERN SPECIES 202 DOC2B (ENSSGRG00000050542) ENSSGRG00000050545 castor2 (ENSSGRG00000050551) rcc1l (ENSSGRG00000050626) ncf1 (ENSSGRG00000001171) polr2j (ENSSGRG00000001376) lrwd1 (ENSSGRG00000001451) bckdk (ENSSGRG00000001457) orai2 (ENSSGRG00000001461) pex12 (ENSSGRG00000001468) #21 ENSSGRG00000001477 ap2b1 (ENSSGRG00000001549) #22 RASL10B (ENSSGRG00000005030) #23 ENSSGRG00000005031 #24 im:7138535 (ENSSGRG00000005033) HNRNPUL1 (ENSSGRG00000005034) ENSSGRG00000005039 SYMPK (ENSSGRG00000005045) ENSSGRG00000005050 napaa (ENSSGRG00000005054) ENSSGRG00000005057 EHD2 (ENSSGRG00000005063) ENSSGRG00000005593 AKAP10 (ENSSGRG00000005599) ENSSGRG00000005733 ENSSGRG00000005735 ENSSGRG00000005739 Zebrafish MODERN SPECIES 20 ENSDARG00000044290 ENSDARG00000093734 castor2 (ENSDARG00000018985) rcc1l (ENSDARG00000059583) ncf1 (ENSDARG00000033735) polr2j (ENSDARG00000035146) alkbh4 (ENSDARG00000052247) lrwd1 (ENSDARG00000035147) bckdk (ENSDARG00000016904) orai2 (ENSDARG00000035148) pex12 (ENSDARG00000035149) #21 drll.3 (ENSDARG00000095635) drll.2 (ENSDARG00000035150) drll.1 (ENSDARG00000035151) drl (ENSDARG00000078004) ap2b1 (ENSDARG00000035152) #22 RASL10B (ENSDARG00000109436) #23 ENSDARG00000073860 #24 im:7138535 (ENSDARG00000057245) ENSDARG00000079780 ENSDARG00000088069 SYMPK (ENSDARG00000059553) RSPH6A (ENSDARG00000067606) napaa (ENSDARG00000067605) ENSDARG00000094214 ENSDARG00000052188 EHD2 (ENSDARG00000035137) selenow1 (ENSDARG00000035136) AKAP10 (ENSDARG00000059549) ENSDARG00000094587 ENSDARG00000098537 Clupeiformes ANCESTRAL SPECIES 134 ENSGT00940000158479 ENSGT00940000156492 ENSGT00940000159095 ENSGT00940000153883.b ENSGT00940000156758 ENSGT00940000173997 ENSGT00390000006208.a ENSGT00940000157317 ENSGT00940000160014 ENSGT00550000074975 ENSGT00390000006344 ENSGT00940000154248.b ENSGT01030000234646.A ENSGT00390000015354.c.b.b ENSGT00390000016209 #21 ENSGT00940000155206 #22 ENSGT00940000160764 #23 ENSGT00940000154849.a #24 ENSGT00440000037341.b.b ENSGT00390000008162.e ENSGT00940000157662.g.a ENSGT00390000007799 ENSGT00940000162993 ENSGT00940000178427 ENSGT00940000157627 ENSGT00390000012008.a ENSGT00940000155587.a.a.a ENSGT00940000158657 ENSGT00500000044966 ENSGT01100000263551.a.a ENSGT00950000182952.A.a Atlantic herring MODERN SPECIES 24 dtx2 (ENSCHAG00000012292) tmem132e (ENSCHAG00000012267) lig3 (ENSCHAG00000010657) rad51d (ENSCHAG00000010433) tmem248 (ENSCHAG00000010393) DOC2B (ENSCHAG00000010284) ENSCHAG00000010241 castor2 (ENSCHAG00000010205) rcc1l (ENSCHAG00000010179) ncf1 (ENSCHAG00000010068) alkbh4 (ENSCHAG00000010050) lrwd1 (ENSCHAG00000009895) bckdk (ENSCHAG00000009844) orai2 (ENSCHAG00000009764) pex12 (ENSCHAG00000009753) #21 ap2b1 (ENSCHAG00000009463) #22 RASL10B (ENSCHAG00000009444) #23 ENSCHAG00000009415 #24 im:7138535 (ENSCHAG00000009361) HNRNPUL1 (ENSCHAG00000008313) tlcd5b (ENSCHAG00000008287) ENSCHAG00000006046 cenatac (ENSCHAG00000005957) zgc:194948 (ENSCHAG00000005918) pou2f3 (ENSCHAG00000005880) OAF (ENSCHAG00000005861) ENSCHAG00000005526 slc37a2 (ENSCHAG00000003329) ENSCHAG00000003206 HEPACAM (ENSCHAG00000003179) nrgna (ENSCHAG00000003163) Denticle herring MODERN SPECIES 16 crcp (ENSDCDG00000005168) rad51d (ENSDCDG00000005166) tmem248 (ENSDCDG00000005164) DOC2B (ENSDCDG00000005127) castor2 (ENSDCDG00000005098) polr2j (ENSDCDG00000005033) alkbh4 (ENSDCDG00000005029) bckdk (ENSDCDG00000019089) btg4 (ENSDCDG00000019043) nrgna (ENSDCDG00000019034) HEPACAM (ENSDCDG00000019031) ENSDCDG00000019023 ENSDCDG00000019015 orai2 (ENSDCDG00000019012) pex12 (ENSDCDG00000019009) #21 ap2b1 (ENSDCDG00000015018) #22 tlcd5b (ENSDCDG00000014921) cenatac (ENSDCDG00000014585) foxr1 (ENSDCDG00000014581) slc37a2 (ENSDCDG00000014410) ENSDCDG00000014394 pou2f3 (ENSDCDG00000014377) ENSDCDG00000014369 alg9 (ENSDCDG00000014306) gig2p (ENSDCDG00000014280) ufc1 (ENSDCDG00000014274) TOMM40L (ENSDCDG00000014261) ENSDCDG00000014252 bicdl2 (ENSDCDG00000014238) mia (ENSDCDG00000014224) ENSDCDG00000014219